After checking out for the first time:

aclocal
autoconf
automake --add-missing

To check all of the dependencies, run

for i in *.F;   do make clean; echo "******"; echo "making $i"; echo "******"; make `basename $i .F`.o   || break; done
for i in *.C;   do make clean; echo "******"; echo "making $i"; echo "******"; make `basename $i .C`.o   || break; done
for i in *.F90; do make clean; echo "******"; echo "making $i"; echo "******"; make `basename $i .F90`.o || break; done

For gfortran, use:

./configure FC=/usr/local/gcc-4.2.1/bin/gfortran F77=/usr/local/gcc-4.2.1/bin/gfortran CC=/usr/local/gcc-4.2.1/bin/gcc CPPFLAGS="-DGFORTRAN -DPHIPAC"
