#In the /usr/lib/qiime/shell directory are .zshrc and .bashrc files to set up the environment 
#needed for running Qiime.  There may be a less hacky way of doing this but it works for now.

# Qiime basic environment.  Note that sourcing this file multiple times is not idempotent 
# and should be avoided!
# This file needt to be readable by /bin/sh so no bash-isms allowed.

export PYTHONPATH=$PYTHONPATH/:/usr/share/pyshared/qiime:/usr/local/bioinf/denoiser/denoiser
export PATH=$PATH:/usr/lib/qiime/bin
export QIIME_CONFIG_FP=/etc/qiime/qiime_config
export BLASTMAT=/usr/share/ncbi/data
export QIIME_HELP_TEXT=/usr/lib/qiime/shell/qiime_help
