* commit 55984f5a1b3d2438cd8b9c4f5b1d070a9d974461
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Dec 12 01:01:59 2011 +0400
| 
|     Updated news
| 
| M	src/NEWS
|  
* commit 519e8415da7f6034c2e21af87a572335155f0e35
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 10 23:17:57 2011 +0100
| 
|     use <atlas/clapack.h> as the include path instead of requiring
|     /usr/include/atlas in includepath
| 
| M	src/configure
| M	src/shogun/classifier/svm/pr_loqo.cpp
| M	src/shogun/mathematics/lapack.h
|  
* commit dd5392763e81cdb6d238f90173f0d57d71af60a1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 10 22:42:36 2011 +0100
| 
|     add /usr/include/atlas to include paths
| 
| M	src/configure
|    
*   commit a9ed516b49f835b053bd92142e150bf58858ddea
|\  Merge: e283bf5 f5e0c43
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Dec 9 12:35:36 2011 -0800
| | 
| |     Merge pull request #331 from romovpa/master
| |     
| |     Configure fixed to build matlab_static on Darwin, x86_64
| |   
| * commit f5e0c43b665140872681ac7803c1dc9403d8cbd6
| | Author: Peter Romov <peter@romov.ru>
| | Date:   Fri Dec 9 15:54:48 2011 +0400
| | 
| |     fix configure for Darwin-x86_64, matlab_static
| | 
| | M	src/configure
| |   
* | commit e283bf5cb2a448641b9599197415ac45e8b027d8
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Fri Dec 9 21:16:25 2011 +0100
|   
|       fix compilation for lua modular on cygwin
|       
|       remove double '/' on make install; compile and install with
|       make install DESTDIR=
|       when you are on cygwin to fix issue with special //name/
|   
|   M	src/Makefile.template
|   M	src/configure
|  
* commit f77788a8f61b530085c1f63ef8b2c520d0a2fcd1
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Thu Dec 8 17:00:08 2011 +0400
| 
|     Updated words embedding application
| 
| M	applications/dimreduction/words_embedding.py
|  
* commit 52f7c5aacd57d7b56ac21af76275cf9c0d3ade2d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Thu Dec 8 16:42:47 2011 +0400
| 
|     Update data
| 
| M	data
|  
* commit 2c4ee342258a146822b2a19e33b137a210992310
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 7 19:56:26 2011 +0100
| 
|     fix other places to work with SGVector
| 
| M	src/shogun/classifier/mkl/MKL.cpp
| M	src/shogun/classifier/mkl/MKLMultiClass.cpp
| M	src/shogun/classifier/svm/SVMLight.cpp
| M	src/shogun/distributions/HMM.cpp
| M	src/shogun/kernel/CombinedKernel.cpp
| M	src/shogun/kernel/Kernel.cpp
| M	src/shogun/kernel/Kernel.h
| M	src/shogun/regression/svr/SVRLight.cpp
| M	src/shogun/ui/SGInterface.cpp
|  
* commit 1a2c5b0bcecbf5866673424bed5e0d3abfbaecca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 7 19:56:13 2011 +0100
| 
|     adjust example to SGVector style
| 
| M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
|  
* commit 2b03faf05931b4fdb31319ab6f7523f7109794e2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 7 17:40:31 2011 +0100
| 
|     disable hmm parallel learning/structures and thus parallel hmm
|     training/application at all.
|     
|     this is a temporary workaround to not see crashes and wrong results when
|     learning
| 
| M	src/configure
|  
* commit 50fb40544a7a6436dd99c832914b43fe5e570269
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 7 10:07:21 2011 +0100
| 
|     add get/set functions for combined kernel weights (forgotten sgvector transition)
| 
| M	src/shogun/kernel/CombinedKernel.cpp
| M	src/shogun/kernel/CombinedKernel.h
|  
* commit 8108a74d975fb414c49cc064ee2d881d949ad1a5
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Dec 6 01:41:02 2011 +0400
| 
|     Added testing info for MDS into python example
| 
| M	examples/undocumented/python_modular/converter_multidimensionalscaling_modular.py
|  
* commit 51970aa0e4e96847b3455be6b80528b0c6610217
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Dec 6 01:19:50 2011 +0400
| 
|     Changed tolerance to max
| 
| M	testsuite/python_modular/tester.py
|  
* commit 21324b9536cbd0f81909f4d820f6f6ea4d7d043d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Dec 6 01:12:52 2011 +0400
| 
|     Faces application to dimreduction, added word embedding example
| 
| A	applications/dimreduction/faces_embedding.py
| A	applications/dimreduction/words_embedding.py
| D	applications/faces/faces_embedding.py
|  
* commit 380f6e2c04e3f05fac6d50645e545704059f8a88
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Dec 6 01:05:58 2011 +0400
| 
|     Added tolerance option for tester
| 
| M	testsuite/python_modular/tester.py
|  
* commit 0a365228e17850e81a4b78ddba4da83ca3976021
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 5 20:28:17 2011 +0100
| 
|     require new data for regression tests
| 
| M	data
|  
* commit 77c55d7ca75d36c2e93daed647ba9b6f33e11f7b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 5 20:17:45 2011 +0100
| 
|     fix library and evaluation test
| 
| M	examples/undocumented/python_modular/evaluation_thresholds_modular.py
| M	examples/undocumented/python_modular/library_time.py
|  
* commit d320074a44e531c726fe20b090c8d8816f8852c0
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Dec 5 01:03:09 2011 +0400
| 
|     Added embed kernel for the kernel LLE
| 
| M	src/shogun/converter/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/converter/KernelLocallyLinearEmbedding.h
| M	src/shogun/converter/LocallyLinearEmbedding.cpp
| M	src/shogun/converter/LocallyLinearEmbedding.h
|  
* commit 071884488432135323bf1f6f43f02793afbcfde2
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Dec 4 02:28:21 2011 +0400
| 
|     Reconstruction error setting support for the KLLE
| 
| M	src/shogun/converter/KernelLocallyLinearEmbedding.cpp
|    
*   commit 32a69bd9c3331a03b2f45dd66500579b01a8e851
|\  Merge: 2fedc4d a0193ba
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Dec 4 02:27:36 2011 +0400
| | 
| |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| |   
| * commit a0193ba68e1e2370101f42ecde9441694ac4c0da
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Dec 2 23:52:45 2011 +0100
| | 
| |     ignore further unuseable functions
| | 
| | M	src/interfaces/modular/modshogun_ignores.i
| |   
* | commit 2fedc4d805306343a4c6b8ac068d0923993af6f4
|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|   Date:   Sun Dec 4 02:27:04 2011 +0400
|   
|       Added sgmatrix constructor for the CustomDistance
|   
|   M	src/shogun/distance/CustomDistance.cpp
|   M	src/shogun/distance/CustomDistance.h
|  
* commit b2b1573ca9bce737c2d1aeb2c050d90eeed942c0
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Dec 3 00:01:06 2011 +0400
| 
|     Restored normalization at Difmaps
| 
| M	src/shogun/converter/DiffusionMaps.cpp
|  
* commit 825dc668e41399e1d98afccdbb5ea4d3be5744d9
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Dec 2 23:26:45 2011 +0400
| 
|     Added KLTSA swissroll example
| 
| A	examples/undocumented/python_modular/graphical/kltsa_swissroll.py
|  
* commit cf14be08371ae4cee6dd20654e6605cf8c133443
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 2 10:37:36 2011 +0100
| 
|     fix documenation path in README
| 
| M	README
|  
* commit c1ee76315427bb9ca8a6670aed8e91c6e6bb0860
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 2 08:34:24 2011 +0100
| 
|     add ignores for sparsefeatures
| 
| M	src/interfaces/modular/modshogun_ignores.i
|  
* commit b56cadaaea2189e682574a0a27edbc3efcd66cc6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 2 06:01:11 2011 +0100
| 
|     add ignores from simple features
| 
| M	src/interfaces/modular/modshogun_ignores.i
|  
* commit 5001443d6c32ecbb9243398438e3c3d21ca16cd7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 2 00:14:14 2011 +0100
| 
|     add a few ignores
| 
| M	src/interfaces/modular/modshogun_ignores.i
|  
* commit 7dedaea7497985ef2f33bbbc4e4079f156d28026
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 1 23:38:05 2011 +0100
| 
|     document undocumented function
| 
| M	src/shogun/kernel/MultitaskKernelNormalizer.h
|  
* commit a6835e352296fc68eeb4a42c4c662cdbe18b454b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 1 23:37:32 2011 +0100
| 
|     just call compute_rec1 in compute()
| 
| M	src/shogun/kernel/ANOVAKernel.cpp
|  
* commit 085aa8eb591a49c6e0bfc8803cab029d8f8ff3c0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 1 08:16:41 2011 +0100
| 
|     move private variables to the bottom of the .h file
| 
| M	src/shogun/lib/DynamicObjectArray.h
|  
* commit 873bb8ee9a5d8e1ad6324cf6de0c782cad153db3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 1 08:15:30 2011 +0100
| 
|     prefix ignores with shogun:: namespace where required
| 
| M	src/interfaces/modular/modshogun_ignores.i
|  
* commit 23d1853bbec42ba2c9ed4779f3c7eff76a3a7626
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 30 20:48:51 2011 +0100
| 
|     fix syntax error in ignores
| 
| M	src/interfaces/modular/modshogun_ignores.i
|  
* commit 44581da3e3f4c4c6d03e9ca60442ddf527e91e12
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 30 20:24:57 2011 +0100
| 
|     ignore a number of irrelevant functions
| 
| M	src/interfaces/modular/modshogun_ignores.i
|  
* commit d47946c6921e220ba8a13faabbbdf07706dc74cd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 30 20:24:36 2011 +0100
| 
|     define sparse feature vector template
| 
| M	src/interfaces/modular/Library.i
|  
* commit 053b23290acebac9efcefe7a2cd0d4871c013d7d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 30 20:24:02 2011 +0100
| 
|     add get_sparse_feature_vector support in python typemaps
| 
| M	src/interfaces/python_modular/swig_typemaps.i
|  
* commit 176009037331eb48349edcbec33ebb564662d7c3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 30 20:23:43 2011 +0100
| 
|     coding style fixes
| 
| M	src/shogun/kernel/MultitaskKernelTreeNormalizer.h
|  
* commit 646ff20e8064b6b4b03110e4edce4ff9d52fdb1e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 30 14:04:35 2011 +0100
| 
|     add example for thresholds
| 
| A	examples/undocumented/python_modular/evaluation_thresholds_modular.py
|  
* commit afa485244fc7a1026707c1853b04ea161a8d837c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 30 13:52:41 2011 +0100
| 
|     add option to get corresponding bias-thresholds together with PRC / ROC curve
| 
| M	src/shogun/evaluation/PRCEvaluation.cpp
| M	src/shogun/evaluation/PRCEvaluation.h
| M	src/shogun/evaluation/ROCEvaluation.cpp
| M	src/shogun/evaluation/ROCEvaluation.h
|  
* commit 4bce5acff40b9703b62a0b19d655f8ac4824fabe
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 29 23:14:40 2011 +0100
| 
|     Overhaul python typemaps
|     
|     - check that we don't have a list as input
|     - refactor code to call static functions to only have minimal
|     functionality inside the actuall typemap
|     - re-enable boolean type by default to fix crasher
| 
| M	src/configure
| M	src/interfaces/octave_modular/swig_typemaps.i
| M	src/interfaces/python_modular/swig_typemaps.i
|  
* commit 6aebf7d174926da52d35a541f7471dc98bfe90c7
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Nov 29 16:06:49 2011 +0400
| 
|     Warn that LTSA is slower than KLTSA with linear
| 
| M	src/shogun/converter/LocalTangentSpaceAlignment.h
|  
* commit a4085ce45ef1883df373693b7a2ffb4bed840c04
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Nov 27 02:07:02 2011 +0400
| 
|     Updated naming, fixed makefile
| 
| M	examples/undocumented/libshogun/Makefile
| D	examples/undocumented/libshogun/preproc_randomfouriergauss.cpp
| A	examples/undocumented/libshogun/preprocessor_randomfouriergauss.cpp
|  
* commit 769a0647d4a2dde9348a45d714b0a6be9fa60b0c
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Nov 27 01:56:02 2011 +0400
| 
|     Removed mkl memleak test that is hardly requiring GLPK
| 
| D	examples/undocumented/libshogun/mkl_memleak_test.cpp
|  
* commit 3d7aff8a47aeab9ec5b7e3cb93e58eb0554a1dac
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Nov 27 01:52:52 2011 +0400
| 
|     Fix descriptions naming for preprocessors moved to converters before
| 
| A	examples/descriptions/modular/converter_hessianlocallylinearembedding.txt
| A	examples/descriptions/modular/converter_isomap.txt
| A	examples/descriptions/modular/converter_kernellocallylinearembedding.txt
| A	examples/descriptions/modular/converter_laplacianeigenmaps.txt
| A	examples/descriptions/modular/converter_locallylinearembedding.txt
| A	examples/descriptions/modular/converter_localtangentspacealignment.txt
| A	examples/descriptions/modular/converter_multidimensionalscaling.txt
| D	examples/descriptions/modular/preprocessor_hessianlocallylinearembedding.txt
| D	examples/descriptions/modular/preprocessor_isomap.txt
| D	examples/descriptions/modular/preprocessor_kernellocallylinearembedding.txt
| D	examples/descriptions/modular/preprocessor_laplacianeigenmaps.txt
| D	examples/descriptions/modular/preprocessor_locallylinearembedding.txt
| D	examples/descriptions/modular/preprocessor_localtangentspacealignment.txt
| D	examples/descriptions/modular/preprocessor_multidimensionalscaling.txt
|  
* commit bd6dcdeb050a3b9452431df490bc7038079414ed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 23 20:05:46 2011 +0100
| 
|     get ruby back to work
|     
|     - add configure option --ruby to be able to specify the ruby version to be used
|     - use rb_cObject instead of ruby_class to fix undefined symbol error
|     - beautify example
| 
| M	examples/undocumented/ruby_modular/check.sh
| M	examples/undocumented/ruby_modular/classifier_custom_kernel_modular.rb
| M	src/Makefile.template
| M	src/configure
| M	src/interfaces/modular/SGBase.i
|  
* commit ecdb955c891e8869f2a77a4aea44c84dd6f034f5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 23 08:52:54 2011 +0100
| 
|     rb_require narray on modshogun module load
| 
| M	src/Makefile.template
| M	src/interfaces/modular/SGBase.i
| M	src/interfaces/ruby_modular/swig_typemaps.i
|  
* commit fd6b20d186cd3312265e242b7666f236c170b3c9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 22 22:45:04 2011 +0100
| 
|     don't link against narray.so but instead dlopen narray
| 
| M	src/Makefile.template
| M	src/configure
| M	src/interfaces/modular/SGBase.i
| M	src/interfaces/ruby_modular/swig_typemaps.i
|  
* commit 21f5ad2509b6d7f46b94b4696f5637749af908da
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 22 20:24:45 2011 +0100
| 
|     use glpk and 1 norm on this example
| 
| M	examples/undocumented/libshogun/mkl_memleak_test.cpp
|  
* commit 2d4c51cd4d9878a2a3926bea300d02f79c895f46
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 22 07:57:22 2011 +0100
| 
|     fix mkl example
| 
| M	examples/undocumented/libshogun/mkl_memleak_test.cpp
|  
* commit 1f4a30c99f66f7cc2f470442fc6ba4272add269f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 22 07:55:42 2011 +0100
| 
|     Detect gem installed narray upon configure
| 
| M	src/Makefile.template
| M	src/configure
|  
* commit 5e4eb1aff0731775deee712d4deef8fae5ad9101
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Nov 22 00:34:52 2011 +0400
| 
|     Removed kpca test from makefile
| 
| M	examples/undocumented/libshogun/Makefile
|  
* commit a41c477527675670c1d158b8eed6e6bce5f93ed1
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Nov 19 20:37:44 2011 +0400
| 
|     Added MKL memleak test
| 
| M	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/mkl_memleak_test.cpp
|  
* commit 616090cb1a850c8a8b8290aeac6f9ad092a08774
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 15 19:48:55 2011 +0100
| 
|     fix lib/versionstring.h creation on cygwin
| 
| M	src/Makefile.template
|  
* commit 8671be82fad2316fbae1bc4726669e2e63b7cb1e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 15 19:48:46 2011 +0100
| 
|     white space beautifications
| 
| M	src/configure
|  
* commit 56afbe6838285b366059cc6b0e3de9952bef5af3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 14 20:27:03 2011 +0100
| 
|     enable set_shifts in wds examples
| 
| M	examples/undocumented/java_modular/kernel_weighted_degree_position_string_modular.java
| M	examples/undocumented/python_modular/kernel_weighted_degree_position_string_modular.py
|  
* commit 6c757524bcd2171cb3457c42ceb468eefa6a99b3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 14 20:25:40 2011 +0100
| 
|     use strcmp for string comparison in ruby typemaps
| 
| M	src/interfaces/ruby_modular/swig_typemaps.i
|  
* commit 0ef36802332f701d82d3476868dc889917673935
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 14 09:01:30 2011 +0100
| 
|     use free_matrix instead of destroy_matrix and adjust swig in typemaps
| 
| M	src/interfaces/csharp_modular/swig_typemaps.i
| M	src/interfaces/java_modular/swig_typemaps.i
| M	src/interfaces/lua_modular/swig_typemaps.i
| M	src/interfaces/octave_modular/swig_typemaps.i
| M	src/interfaces/python_modular/swig_typemaps.i
| M	src/interfaces/ruby_modular/swig_typemaps.i
| M	src/shogun/kernel/CustomKernel.h
|  
* commit 54fc1333bb5b6598ab862a90837a9c95b58a36f9
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Nov 14 00:55:26 2011 +0400
| 
|     Update NEWS
| 
| M	src/NEWS
|  
* commit 4b4d8c57deffbf6b9683d39e7ffb0c8dc796ff53
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Nov 12 01:39:53 2011 +0400
| 
|     Fixes memory leak on custom kernel creation
| 
| M	src/shogun/kernel/CustomKernel.h
|  
* commit 2478ae7b8233cb4ef7c186260bd0f3c1fadffdcc
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Nov 12 00:53:40 2011 +0400
| 
|     Fixed kernel get kernel matrix routine
| 
| M	src/shogun/kernel/Kernel.h
|  
* commit 2f2a895715ec5b20079323f282d7730e011d5242
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 11 20:57:50 2011 +0100
| 
|     Fix compilation under cygwin and for octave 3.4.x
| 
| M	src/configure
| M	src/interfaces/octave_static/OctaveInterface.cpp
|  
* commit 64569cdd8e2e11fe4731c9ef09253205259dc6e9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 10 22:13:02 2011 +0100
| 
|     fix example failures under osx / vector lib detection
| 
| M	src/configure
|  
* commit 3a03eb03ee2b8e82ab773605cb1d40876d398bc9
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Nov 8 01:02:31 2011 +0400
| 
|     Fix kernel handling in kernel pca
| 
| M	src/shogun/preprocessor/KernelPCA.cpp
|  
* commit ac2ec88746afe12d5f5378409c707b478fd9750b
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Nov 8 00:27:44 2011 +0400
| 
|     Few doc warnings removed
| 
| M	src/shogun/kernel/CombinedKernel.h
| M	src/shogun/kernel/MultitaskKernelMaskNormalizer.h
| M	src/shogun/kernel/MultitaskKernelMaskPairNormalizer.h
| M	src/shogun/kernel/MultitaskKernelPlifNormalizer.h
| M	src/shogun/kernel/MultitaskKernelTreeNormalizer.h
|  
* commit 1c046cc3dd78999e7f6bccd611cb91da3914bbdf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 7 20:00:56 2011 +0100
| 
|     fix dotfeatures bug, intended check is 0<=num<=get_num_vectors()
| 
| M	src/shogun/features/DotFeatures.cpp
|  
* commit 8b95bcfec0018318f7415469942b8df3de23b91d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 7 14:52:38 2011 +0100
| 
|     include alphabet before features to fix swig errors
| 
| M	src/interfaces/modular/Features.i
|  
* commit a0de0d63e63ed0e909017b491a5c61dab9709394
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 7 14:38:43 2011 +0100
| 
|     no longer link examples with -lblas or the like
|     
|     Instead hide glpk / blas /lapack etc library calls in .cpp files (instead of having them
|     visible in the respective .h file)
| 
| M	examples/undocumented/libshogun/Makefile
| M	src/shogun/classifier/mkl/MKLMultiClassGLPK.cpp
| M	src/shogun/classifier/mkl/MKLMultiClassGLPK.h
|  
* commit ef9224f4bd9cb8168c5775e13a1671076cc468a1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 6 21:38:06 2011 +0100
| 
|     export only sg / shogun and fix r example
| 
| M	examples/undocumented/r_static/mkl_regression_3sine_waves.R
| M	src/.r-install.sh
|  
* commit 5d580e05e3e1f0595718f701c7aed626bd76d376
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Nov 7 00:29:06 2011 +0400
| 
|     Optimized LLEs using reformulation with alignment
| 
| M	src/shogun/converter/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/converter/KernelLocallyLinearEmbedding.h
| M	src/shogun/converter/LocallyLinearEmbedding.cpp
| M	src/shogun/converter/LocallyLinearEmbedding.h
|  
* commit a7bec529cfd4d794bdf6c4a48aedb0587f8e3914
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 6 21:25:03 2011 +0100
| 
|     add forgotten newline in r install
| 
| M	src/.r-install.sh
|  
* commit 9b3d028947bfaf13a723b9a0464b4ba8d01491f7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 6 21:05:36 2011 +0100
| 
|     add a NAMESPACE file for R
| 
| M	src/.r-install.sh
|  
* commit aaaaab276f35e733bc082a5b46f2657883e0d684
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 6 20:48:46 2011 +0100
| 
|     depend on R 2.10.0 in r installation - and don't use 2.10.0 but 2.10 in
|     Rdepends2 to hopefully fix an issue with R 2.14.0's library() function.
| 
| M	src/.r-install.sh
|  
* commit 7708783c0af980b237f9af832b2ae704c0fd93ed
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Nov 6 17:12:56 2011 +0400
| 
|     Added warning to not use parallel LTSA with old LAPACK
| 
| M	src/shogun/converter/KernelLocalTangentSpaceAlignment.h
| M	src/shogun/converter/LocalTangentSpaceAlignment.h
|  
* commit 54afa01d38d3f72adfe7e5faa59bee84fe5f0465
| Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| Date:   Sat Nov 5 22:01:38 2011 +0000
| 
|     temporary added include to compile again
|     (string include was recently removed out of Kernel.h)
| 
| M	src/shogun/kernel/MultitaskKernelMaskPairNormalizer.h
|  
* commit 857311c912456537894daed16c758556c699797c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 5 19:58:51 2011 +0100
| 
|     introduce MeanAbsoluteError
| 
| M	src/interfaces/modular/Evaluation.i
| M	src/interfaces/modular/Evaluation_includes.i
| A	src/shogun/evaluation/MeanAbsoluteError.cpp
| A	src/shogun/evaluation/MeanAbsoluteError.h
|  
* commit 59c976aaa35ebcbc7ea046cc040e10516e11c11a
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Nov 5 19:43:51 2011 +0400
| 
|     Added LPP python modular example
| 
| A	examples/undocumented/python_modular/converter_localitypreservingprojections_modular.py
|  
* commit 52802826574a1c445acdbd30b391ca999c8066ac
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Nov 5 19:42:15 2011 +0400
| 
|     Optimized KLTSA
| 
| M	src/shogun/converter/KernelLocalTangentSpaceAlignment.cpp
|  
* commit dafece048c28b8784988b3a475c084c733973760
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Nov 5 19:41:46 2011 +0400
| 
|     Optimized LTSA
| 
| M	src/shogun/converter/LocalTangentSpaceAlignment.cpp
|  
* commit 4b6f385d38b5746bdb003946f27f9473529483c0
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Nov 5 19:39:40 2011 +0400
| 
|     Removed float lapack wrappers
| 
| M	examples/undocumented/libshogun/mathematics_lapack.cpp
| M	src/shogun/mathematics/lapack.cpp
| M	src/shogun/mathematics/lapack.h
|  
* commit 38b34fd0858e51d05a1de25bea9254f8281c7b88
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Nov 4 23:06:56 2011 +0400
| 
|     fixed arpack libshogun test
| 
| M	examples/undocumented/libshogun/mathematics_arpack.cpp
|  
* commit 66fe740cd342b2d25a866799ef6de0fb79ac7e53
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 4 19:46:37 2011 +0100
| 
|     fix configure for octave
| 
| M	src/configure
|  
* commit 06d09de8dfebab945d6969f777bc06d23833b0c6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 2 20:52:13 2011 +0100
| 
|     beautify configure and hopefully fix a number of race conditions
| 
| M	src/configure
|  
* commit 20d50631af929406a2323bc4c7927ca4ff04f8db
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Nov 2 01:36:19 2011 +0400
| 
|     Introduced LPP (Locality Preserving Projections) converter
| 
| M	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/converter_localitypreservingprojections.cpp
| M	src/interfaces/modular/Converter.i
| M	src/interfaces/modular/Converter_includes.i
| M	src/shogun/converter/LaplacianEigenmaps.cpp
| M	src/shogun/converter/LaplacianEigenmaps.h
| A	src/shogun/converter/LocalityPreservingProjections.cpp
| A	src/shogun/converter/LocalityPreservingProjections.h
|  
* commit 456d8c8fef8dd304e6527a734a1fe4d00d9ef7a9
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Nov 2 00:07:20 2011 +0400
| 
|     Extracted embedding construction algorithms into subroutine
| 
| M	src/shogun/converter/LaplacianEigenmaps.cpp
| M	src/shogun/converter/LaplacianEigenmaps.h
|  
* commit 13b6c8d095aac08c881d46186b2ec0d2e85ab09b
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Nov 1 23:26:51 2011 +0400
| 
|     Updated NEWS
| 
| M	src/NEWS
|  
* commit 09429bf868419ea90a178c4f0770de9ecca3853c
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Nov 1 20:52:31 2011 +0400
| 
|     Mention disadvantage of auto k for locally linear embedding
| 
| M	src/shogun/converter/LocallyLinearEmbedding.h
|  
* commit 5ced67a815b79a88d9e5a096b482309377b6f4cf
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 30 00:52:46 2011 +0400
| 
|     Fixed spacings at SGObject
| 
| M	src/shogun/base/SGObject.cpp
| M	src/shogun/base/SGObject.h
|  
* commit e9c8ecd48b75581ca8648f38016ab82d3cff79a1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 29 00:30:16 2011 +0200
| 
|     fix an error in the lua typemaps (checking for the typecode without using strcmp)
| 
| M	src/interfaces/lua_modular/swig_typemaps.i
|  
* commit 082decd826617176ed4c7f15589976944ec2cb6f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 28 23:50:51 2011 +0200
| 
|     fix various compiler warnings and errors occurring with clang++
| 
| M	src/shogun/base/class_list.cpp.py
| M	src/shogun/base/class_list.cpp.templ
| M	src/shogun/classifier/mkl/MKL.cpp
| M	src/shogun/classifier/vw/VwRegressor.cpp
| M	src/shogun/classifier/vw/cache/VwNativeCacheReader.cpp
| M	src/shogun/distance/Distance.h
| M	src/shogun/features/Alphabet.cpp
| M	src/shogun/features/DotFeatures.cpp
| M	src/shogun/features/Features.h
| M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| M	src/shogun/features/SimpleFeatures.h
| M	src/shogun/features/StringFeatures.h
| M	src/shogun/io/File.h
| M	src/shogun/io/HDF5File.h
| M	src/shogun/io/MemoryMappedFile.h
| M	src/shogun/kernel/Kernel.h
| M	src/shogun/kernel/SpectrumRBFKernel.cpp
| M	src/shogun/lib/DataType.h
| M	src/shogun/lib/memory.cpp
| M	src/shogun/lib/memory.h
| M	src/shogun/preprocessor/DecompressString.h
| M	src/shogun/preprocessor/Preprocessor.h
|  
* commit f167cccd2141e240aaa0a3cbbf1a271427959b86
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 28 23:49:52 2011 +0200
| 
|     fix java modular typemap to not use  foo x[y] but foo* x= ...
| 
| M	src/interfaces/java_modular/swig_typemaps.i
|  
* commit b11825e3041208de9bb1b9011ffc9ee8bbbd2541
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 28 23:49:18 2011 +0200
| 
|     by convention name SimpleRealPreprocessor just RealPreprocessor etc
| 
| M	src/interfaces/modular/Preprocessor.i
|  
* commit c69feace127f5f74aca978fb87c4341eca6d1729
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 29 01:01:30 2011 +0400
| 
|     Matched KLLE and LLE neighborhood methods
| 
| M	src/shogun/converter/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/converter/KernelLocallyLinearEmbedding.h
|  
* commit 0d22945c226a23f51efb76cfbae423010002e855
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 29 00:47:35 2011 +0400
| 
|     Fixed wrong embed method of Laplacian Eigenmaps
| 
| M	src/shogun/converter/LaplacianEigenmaps.cpp
| M	src/shogun/converter/LaplacianEigenmaps.h
|  
* commit 0a18485a0315ada5d9f3369eb5d064cd159e7f50
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 29 00:38:08 2011 +0400
| 
|     Fixed multidimensional scaling apply method naming
| 
| M	src/shogun/converter/MultidimensionalScaling.cpp
| M	src/shogun/converter/MultidimensionalScaling.h
|  
* commit 2c3a9a33b3f38d54fd0907ecfbf4e0b2389a54fe
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 29 00:34:35 2011 +0400
| 
|     Improved java converter examples
| 
| M	examples/undocumented/java_modular/converter_isomap_modular.java
| M	examples/undocumented/java_modular/converter_locallylinearembedding_modular.py
| M	examples/undocumented/java_modular/converter_multidimensionalscaling_modular.java
|  
* commit 99adde9013a2b5fc12c9b181045220a23593c09a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 28 17:59:30 2011 +0200
| 
|     Improve configure
|     
|     - detect glpk, atlas on rpm based distributions in /usr/lib*/atlas
|     - print a warning when jblas is not found that examples won't work
| 
| M	src/configure
|  
* commit 890ea7901b49a5e21ee04568946665c5798ee9ae
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 27 20:38:00 2011 +0200
| 
|     move the %inline parts of the code doing dynamic casts back into the
|     respective classes
| 
| M	src/interfaces/modular/Kernel.i
| M	src/shogun/kernel/CombinedKernel.h
| M	src/shogun/kernel/MultitaskKernelMaskNormalizer.h
| M	src/shogun/kernel/MultitaskKernelMaskPairNormalizer.h
| M	src/shogun/kernel/MultitaskKernelNormalizer.h
| M	src/shogun/kernel/MultitaskKernelPlifNormalizer.h
| M	src/shogun/kernel/MultitaskKernelTreeNormalizer.h
|  
* commit 4e28d277ba4d9a31f421e4d31208c648905f017d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 26 22:10:55 2011 +0200
| 
|     use static functions for helpers
| 
| M	src/interfaces/python_modular/swig_typemaps.i
|  
* commit 7e2eef2fac2f4e6e96343bd603ff02f85801a788
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Oct 26 23:51:42 2011 +0400
| 
|     Added kernel constructor for KLTSA
| 
| M	src/shogun/converter/KernelLocalTangentSpaceAlignment.cpp
| M	src/shogun/converter/KernelLocalTangentSpaceAlignment.h
|  
* commit 28568767116be70d8249a231ea37783dd60bddb3
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Oct 24 02:26:18 2011 +0400
| 
|     Improved faces dimreduction application
| 
| M	applications/faces/faces_embedding.py
|  
* commit 4bd8b18a6d8fdf76d3c02e62e10a864fe2d4ab73
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Oct 24 02:03:55 2011 +0400
| 
|     Added embed kernel to DiffusionMaps
| 
| M	src/shogun/converter/DiffusionMaps.cpp
| M	src/shogun/converter/DiffusionMaps.h
|  
* commit ae5401a1f8c84d5f1e412ba41544a789aad64b1f
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Oct 24 02:03:31 2011 +0400
| 
|     Added embed to distance to LaplacianEigenmaps
| 
| M	src/shogun/converter/LaplacianEigenmaps.cpp
| M	src/shogun/converter/LaplacianEigenmaps.h
|  
* commit 4e3ea174bc20c73032d3b2c7d59a2303c805791c
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Oct 24 02:03:05 2011 +0400
| 
|     Changed apply to distance to embed to distance
| 
| M	src/shogun/converter/MultidimensionalScaling.cpp
| M	src/shogun/converter/MultidimensionalScaling.h
|  
* commit 678d405faa7168589deaa09f5645960031173152
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Oct 24 02:02:45 2011 +0400
| 
|     Made EmbeddingConverter embed method virtual
| 
| M	src/shogun/converter/EmbeddingConverter.h
|  
* commit 6eb1c3ae6ce26ed79f4f3ca3aaf69f7af2d5c60e
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Oct 24 02:02:23 2011 +0400
| 
|     Fixed arpack wrapper doc
| 
| M	src/shogun/mathematics/arpack.h
|  
* commit 89c91c4382165995da5d67b43921cebccbce3d87
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 23 01:48:42 2011 +0200
| 
|     fix compiler errors occurring with clang
| 
| M	src/shogun/io/InputParser.h
| M	src/shogun/io/SimpleFile.h
|  
* commit bf0bf4886d0bdab057d0f972f20f943025bae42c
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 23 21:35:45 2011 +0400
| 
|     Added warning of LLTSA and NPE are hardly applicable to very high-dimensional data
| 
| M	src/shogun/converter/LinearLocalTangentSpaceAlignment.h
| M	src/shogun/converter/NeighborhoodPreservingEmbedding.h
|  
* commit e7b34f1003c87dc04dc374082e54252e40fd9758
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 23 21:23:04 2011 +0400
| 
|     Removed normalization from DiffusionMaps
| 
| M	src/shogun/converter/DiffusionMaps.cpp
|  
* commit f236e25acd21da713fd110a3c18699566da7cc7b
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 23 21:20:07 2011 +0400
| 
|     Added faces dimreduction and clustering application
| 
| A	applications/faces/faces_embedding.py
|  
* commit 0358e2ed260c33da494a81dcba1a414c87fc96d9
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 23 19:56:05 2011 +0400
| 
|     Updated data
| 
| M	data
|  
* commit 1ca6b6016ffd9a59d76f94e65e9f0639dbf9a10b
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 23 19:27:54 2011 +0400
| 
|     Added references to LLTSA and NPE, updated NPE impl
| 
| M	src/shogun/converter/LinearLocalTangentSpaceAlignment.h
| M	src/shogun/converter/NeighborhoodPreservingEmbedding.cpp
| M	src/shogun/converter/NeighborhoodPreservingEmbedding.h
|  
* commit e74284b2fac23748850cbea6204f3ffd50832e59
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 23 18:59:56 2011 +0400
| 
|     Improved arpack wrapper, introduced LLTSA
| 
| M	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/converter_linearlocaltangentspacealignment.cpp
| A	examples/undocumented/python_modular/converter_linearlocaltangentspacealignment_modular.py
| M	src/interfaces/modular/Converter.i
| M	src/interfaces/modular/Converter_includes.i
| M	src/shogun/converter/LaplacianEigenmaps.cpp
| A	src/shogun/converter/LinearLocalTangentSpaceAlignment.cpp
| A	src/shogun/converter/LinearLocalTangentSpaceAlignment.h
| M	src/shogun/converter/LocallyLinearEmbedding.cpp
| M	src/shogun/converter/MultidimensionalScaling.cpp
| M	src/shogun/mathematics/arpack.cpp
| M	src/shogun/mathematics/arpack.h
| D	src/shogun/mathematics/arpack_d.cpp
| D	src/shogun/mathematics/arpack_d.h
| D	src/shogun/mathematics/arpack_s.cpp
| D	src/shogun/mathematics/arpack_s.h
|  
* commit 2b57730baac2f12076a987988b8c336c2c9b1ae9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 21 05:38:42 2011 +0200
| 
|     Fix various configure problems under macosx
| 
| M	src/configure
|  
* commit 1454167d62a90d7650c88b59f6fc1ec0204e70cf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 21 00:54:21 2011 +0200
| 
|     attempt to fix compile warnings under osx
| 
| M	src/shogun/classifier/svm/SVMLight.h
| M	src/shogun/lib/common.h
|  
* commit d4c45e838db4fe554f2c44f38b9da0c9aa52a6c9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 21 00:53:03 2011 +0200
| 
|     compile interfaces in parallel again
| 
| M	src/Makefile
|  
* commit 25eb1e762126c6b3982a3073bfc663fa0162e784
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 20 04:16:39 2011 +0200
| 
|     Add many more c# examples - thanks Daniel Korn for the port
| 
| A	examples/undocumented/csharp_modular/classifier_mpdsvm_modular.cs
| A	examples/undocumented/csharp_modular/classifier_perceptron_modular.cs
| A	examples/undocumented/csharp_modular/clustering_hierarchical_modular.cs
| A	examples/undocumented/csharp_modular/clustering_kmeans_modular.cs
| M	examples/undocumented/csharp_modular/distance_braycurtis_modular.cs
| A	examples/undocumented/csharp_modular/distance_hammingword_modular.cs
| A	examples/undocumented/csharp_modular/distribution_histogram_modular.cs
| A	examples/undocumented/csharp_modular/distribution_hmm_modular.cs
| M	examples/undocumented/csharp_modular/features_snp_modular.cs
| A	examples/undocumented/csharp_modular/features_string_sliding_window_modular.cs
| A	examples/undocumented/csharp_modular/kernel_auc_modular.cs
| A	examples/undocumented/csharp_modular/kernel_combined_modular.cs
| A	examples/undocumented/csharp_modular/kernel_comm_ulong_string_modular.cs
| A	examples/undocumented/csharp_modular/kernel_fixed_degree_string_modular.cs
| A	examples/undocumented/csharp_modular/kernel_local_alignment_string_modular.cs
| A	examples/undocumented/csharp_modular/kernel_locality_improved_string_modular.cs
| M	examples/undocumented/csharp_modular/kernel_log_modular.cs
| A	examples/undocumented/csharp_modular/kernel_match_word_string_modular.cs
| A	examples/undocumented/csharp_modular/kernel_multiquadric_modular.cs
| A	examples/undocumented/csharp_modular/kernel_oligo_string_modular.cs
| A	examples/undocumented/csharp_modular/kernel_poly_match_string_modular.cs
| A	examples/undocumented/csharp_modular/kernel_poly_match_word_string_modular.cs
| A	examples/undocumented/csharp_modular/kernel_power_modular.cs
| A	examples/undocumented/csharp_modular/kernel_weighted_comm_word_string_modular.cs
| A	examples/undocumented/csharp_modular/mkl_binclass_modular.cs
| A	examples/undocumented/csharp_modular/mkl_multiclass_modular.cs
| A	examples/undocumented/csharp_modular/preprocessor_kernelpca_modular.cs
| A	examples/undocumented/csharp_modular/preprocessor_logplusone_modular.cs
| A	examples/undocumented/csharp_modular/preprocessor_pca_modular.cs
| A	examples/undocumented/csharp_modular/preprocessor_sortulongstring_modular.cs
| A	examples/undocumented/csharp_modular/preprocessor_sortwordstring_modular.cs
| A	examples/undocumented/csharp_modular/regression_libsvr_modular.cs
| A	examples/undocumented/csharp_modular/regression_svrlight_modular.cs
|  
* commit 99027e8aa0c8ca1cafeaa74776936f2c14918e5f
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Oct 18 13:21:09 2011 +0400
| 
|     Introduced NeighborhoodPreservingEmbedding (NPE)
| 
| M	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/converter_neighborhoodpreservingembedding.cpp
| M	src/interfaces/modular/Converter.i
| M	src/interfaces/modular/Converter_includes.i
| A	src/shogun/converter/NeighborhoodPreservingEmbedding.cpp
| A	src/shogun/converter/NeighborhoodPreservingEmbedding.h
|  
* commit ea9ad9aa1ec80fc91760d4ae05ff36e620b1e807
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Oct 18 12:20:23 2011 +0400
| 
|     Added embed method to EmbeddingConverter, adapt structure
| 
| M	examples/undocumented/libshogun/converter_diffusionmaps.cpp
| M	examples/undocumented/libshogun/converter_hessianlocallylinearembedding.cpp
| M	examples/undocumented/libshogun/converter_isomap.cpp
| M	examples/undocumented/libshogun/converter_kernellocallylinearembedding.cpp
| M	examples/undocumented/libshogun/converter_kernellocaltangentspacealignment.cpp
| M	examples/undocumented/libshogun/converter_laplacianeigenmaps.cpp
| M	examples/undocumented/libshogun/converter_locallylinearembedding.cpp
| M	examples/undocumented/libshogun/converter_localtangentspacealignment.cpp
| M	examples/undocumented/libshogun/converter_multidimensionalscaling.cpp
| M	examples/undocumented/python_modular/graphical/lle_auto_k.py
| M	examples/undocumented/python_modular/graphical/swissroll.py
| M	src/shogun/converter/DiffusionMaps.cpp
| M	src/shogun/converter/DiffusionMaps.h
| M	src/shogun/converter/EmbeddingConverter.cpp
| M	src/shogun/converter/EmbeddingConverter.h
| M	src/shogun/converter/Isomap.cpp
| M	src/shogun/converter/Isomap.h
| M	src/shogun/converter/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/converter/KernelLocallyLinearEmbedding.h
| M	src/shogun/converter/LaplacianEigenmaps.cpp
| M	src/shogun/converter/LaplacianEigenmaps.h
| M	src/shogun/converter/LocallyLinearEmbedding.cpp
| M	src/shogun/converter/LocallyLinearEmbedding.h
| M	src/shogun/converter/MultidimensionalScaling.cpp
| M	src/shogun/converter/MultidimensionalScaling.h
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
|  
* commit 115a78d3cce0f224155a4f577a6d5a1b2dfbeff5
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Oct 18 12:18:42 2011 +0400
| 
|     Added checking for enabled types to preprocessor modular interfaces
| 
| M	src/interfaces/modular/Preprocessor.i
|  
* commit db8a1a4c21ba1af481f6d75d13acf393532a198f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 18 09:24:30 2011 +0200
| 
|     add int32_t and int64_t to default data types
| 
| M	src/configure
|  
* commit 58f986e2398960b7b7dce936185d465ca745b505
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 17 23:41:35 2011 +0200
| 
|     build shogun's interfaces by default only for a limited set of data types
|     
|     namely char,uint8_t,uint16_t,uint64_t,float32_t,float64_t
| 
| M	src/configure
| M	src/interfaces/modular/Distance.i
| M	src/interfaces/modular/Features.i
| M	src/interfaces/modular/IO.i
| M	src/interfaces/modular/Kernel.i
| M	src/interfaces/modular/Library.i
|  
* commit 06a4899b75c6efea7b9985abab9c58b340357796
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 17 23:40:40 2011 +0200
| 
|     fix typo : -> ;
| 
| M	examples/undocumented/octave_modular/classifier_svm_serialize_modular.m
|  
* commit d651da19c45911d93dacecdeed51c1ccc12f9000
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 17 22:21:50 2011 +0200
| 
|     add example for svm serialization and octave.
|     
|     thanks Michael Herrmann for the contribution
| 
| A	examples/undocumented/octave_modular/classifier_svm_serialize_modular.m
|  
* commit 6f2007f644b4d82a89a53526249ae477637d3f9b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 17 22:06:11 2011 +0200
| 
|     add a get_file_descriptor() function to File
| 
| M	src/shogun/io/File.h
|  
* commit cb90e0d14ac47197bf85f7db935054cdd4d5c99f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 17 19:02:42 2011 +0200
| 
|     uninline code in CrossValidation.h
| 
| M	src/shogun/evaluation/CrossValidation.cpp
| M	src/shogun/evaluation/CrossValidation.h
|  
* commit 002b7bb2f4629e2f6437dcbf66faf6cf39fda32e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 17 16:15:38 2011 +0200
| 
|     remove comments
| 
| M	src/.version.sh
|  
* commit 72d1bdeb46bf0c63c9d59c940930f2dba1bb6111
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 17 15:44:15 2011 +0200
| 
|     mention how to obtain data
| 
| M	src/README.data
|  
* commit b68cab2e594401392e169ffb31af138a1c693acc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 17 15:27:52 2011 +0200
| 
|     mention the most active GSoC authors in AUTHORS
| 
| M	src/AUTHORS
|  
* commit 42e3e94531fad4b3a48d1ab5be4afc6a78393ad5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 17 15:13:49 2011 +0200
| 
|     add comment on how to use swig's 2.0.4 native python interface
| 
| M	src/configure
|  
* commit 3656dd7c341eaa14f9f8839b11b9c5b3cb956105
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 17 13:34:08 2011 +0200
| 
|     add comment about newlines to coding conventions
| 
| M	src/README.developer
|  
* commit 00fd1c4ebd390fc10d9c7897e07337c6a177b884
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 17 12:29:47 2011 +0200
| 
|     fix svmlight based modular examples to use try/catch
| 
| M	examples/undocumented/octave_modular/classifier_svmlight_modular.m
| M	examples/undocumented/octave_modular/regression_svrlight_modular.m
|  
* commit db0d2a40ce4dd22144969640aeea4492907f9433
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 15 12:47:06 2011 +0400
| 
|     Fixed lle_auto_k python graphical example
| 
| M	examples/undocumented/python_modular/graphical/lle_auto_k.py
|  
* commit bcb796774d5b846a83a52a10ebdf33357d07304d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 14 13:21:04 2011 +0200
| 
|     update news
| 
| M	src/NEWS
|  
* commit 8097efee90686e71c90c885527ef84cd0c24280a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 14 09:53:04 2011 +0200
| 
|     fix octave examples
| 
| M	examples/undocumented/octave_modular/kernel_comm_word_string_modular.m
| M	examples/undocumented/octave_modular/kernel_matchwordstring_modular.m
|  
* commit 85b2e687b312ca5a0cbaf413ee2603055825a0f6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 14 09:39:16 2011 +0200
| 
|     fix documentation
| 
| M	src/shogun/converter/Converter.h
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
|  
* commit 87344b733a02c01cb00359a32e34796d29986ee6
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Oct 14 03:08:32 2011 +0400
| 
|     Fixed LLE doc
| 
| M	src/shogun/converter/LocallyLinearEmbedding.h
|  
* commit 5cec6855af1417a7ef4ddb414a429a7a36cf5e55
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Oct 14 02:57:09 2011 +0400
| 
|     Updated lua isomap example
| 
| A	examples/undocumented/lua_modular/converter_isomap_modular.lua
| D	examples/undocumented/lua_modular/preprocessor_isomap_modular.lua
|  
* commit 573e955f49d761a7338fbc4a3bbac617f8b1b307
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Oct 14 02:55:46 2011 +0400
| 
|     Removed Converter.i junk from python_modular
| 
| D	src/interfaces/python_modular/Converter.i
|  
* commit 6e41476c43f5391d0467e9c52a06c2c7f4e1adbe
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Oct 14 02:54:19 2011 +0400
| 
|     Improved converters doc
| 
| M	src/shogun/converter/Converter.h
| M	src/shogun/converter/EmbeddingConverter.cpp
| M	src/shogun/converter/EmbeddingConverter.h
|  
* commit 864758fcd30a2d730cb483dd25f2c6cab9b83d8e
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Oct 14 02:47:26 2011 +0400
| 
|     Removed junk from the last commit
| 
| D	examples/undocumented/python_modular/serialized_svm.bz2
| D	examples/undocumented/python_modular/vw_cache.dat.cache
|  
* commit 04b6de912a2a970e32276cb984b3e98bece8106d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Oct 14 02:30:32 2011 +0400
| 
|     Introduced converters module, moved DR preprocessors to it, fixed examples, updated other classes according to changes
| 
| A	examples/undocumented/csharp_modular/converter_isomap_modular.cs
| A	examples/undocumented/csharp_modular/converter_locallylinearembedding_modular.cs
| A	examples/undocumented/csharp_modular/converter_multidimensionalscaling_modular.cs
| D	examples/undocumented/csharp_modular/preprocessor_isomap_modular.cs
| D	examples/undocumented/csharp_modular/preprocessor_locallylinearembedding_modular.cs
| D	examples/undocumented/csharp_modular/preprocessor_multidimensionalscaling_modular.cs
| A	examples/undocumented/java_modular/converter_isomap_modular.java
| A	examples/undocumented/java_modular/converter_locallylinearembedding_modular.py
| A	examples/undocumented/java_modular/converter_multidimensionalscaling_modular.java
| D	examples/undocumented/java_modular/preprocessor_isomap_modular.java
| D	examples/undocumented/java_modular/preprocessor_locallylinearembedding_modular.java
| D	examples/undocumented/java_modular/preprocessor_multidimensionalscaling_modular.java
| M	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/converter_diffusionmaps.cpp
| A	examples/undocumented/libshogun/converter_hessianlocallylinearembedding.cpp
| A	examples/undocumented/libshogun/converter_isomap.cpp
| A	examples/undocumented/libshogun/converter_kernellocallylinearembedding.cpp
| A	examples/undocumented/libshogun/converter_kernellocaltangentspacealignment.cpp
| A	examples/undocumented/libshogun/converter_laplacianeigenmaps.cpp
| A	examples/undocumented/libshogun/converter_locallylinearembedding.cpp
| A	examples/undocumented/libshogun/converter_localtangentspacealignment.cpp
| A	examples/undocumented/libshogun/converter_multidimensionalscaling.cpp
| D	examples/undocumented/libshogun/preprocessor_diffusionmaps.cpp
| D	examples/undocumented/libshogun/preprocessor_hessianlocallylinearembedding.cpp
| D	examples/undocumented/libshogun/preprocessor_isomap.cpp
| D	examples/undocumented/libshogun/preprocessor_kernellocallylinearembedding.cpp
| D	examples/undocumented/libshogun/preprocessor_kernellocaltangentspacealignment.cpp
| D	examples/undocumented/libshogun/preprocessor_laplacianeigenmaps.cpp
| D	examples/undocumented/libshogun/preprocessor_locallylinearembedding.cpp
| D	examples/undocumented/libshogun/preprocessor_localtangentspacealignment.cpp
| D	examples/undocumented/libshogun/preprocessor_multidimensionalscaling.cpp
| A	examples/undocumented/python_modular/converter_diffusionmaps_modular.py
| A	examples/undocumented/python_modular/converter_hessianlocallylinearembedding_modular.py
| A	examples/undocumented/python_modular/converter_isomap_modular.py
| A	examples/undocumented/python_modular/converter_kernellocallylinearembedding_modular.py
| A	examples/undocumented/python_modular/converter_kernellocaltangentspacealignment_modular.py
| A	examples/undocumented/python_modular/converter_laplacianeigenmaps_modular.py
| A	examples/undocumented/python_modular/converter_locallylinearembedding_modular.py
| A	examples/undocumented/python_modular/converter_localtangentspacealignment_modular.py
| A	examples/undocumented/python_modular/converter_multidimensionalscaling_modular.py
| D	examples/undocumented/python_modular/graphical/hemisphere.py
| M	examples/undocumented/python_modular/graphical/swissroll.py
| D	examples/undocumented/python_modular/preprocessor_diffusionmaps_modular.py
| A	examples/undocumented/python_modular/preprocessor_dimensionreductionpreprocessor_modular.py
| D	examples/undocumented/python_modular/preprocessor_hessianlocallylinearembedding_modular.py
| D	examples/undocumented/python_modular/preprocessor_isomap_modular.py
| D	examples/undocumented/python_modular/preprocessor_kernellocallylinearembedding_modular.py
| D	examples/undocumented/python_modular/preprocessor_kernellocaltangentspacealignment_modular.py
| D	examples/undocumented/python_modular/preprocessor_laplacianeigenmaps_modular.py
| D	examples/undocumented/python_modular/preprocessor_locallylinearembedding_modular.py
| D	examples/undocumented/python_modular/preprocessor_localtangentspacealignment_modular.py
| D	examples/undocumented/python_modular/preprocessor_multidimensionalscaling_modular.py
| A	examples/undocumented/python_modular/serialized_svm.bz2
| A	examples/undocumented/python_modular/vw_cache.dat.cache
| A	examples/undocumented/ruby_modular/converter_hessianlocallylinearembedding_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_hessianlocallylinearembedding_modular.rb
| M	src/Makefile.template
| A	src/interfaces/modular/Converter.i
| A	src/interfaces/modular/Converter_includes.i
| M	src/interfaces/modular/Preprocessor.i
| M	src/interfaces/modular/Preprocessor_includes.i
| M	src/interfaces/modular/modshogun.i
| A	src/interfaces/python_modular/Converter.i
| A	src/shogun/converter/Converter.h
| A	src/shogun/converter/DiffusionMaps.cpp
| A	src/shogun/converter/DiffusionMaps.h
| A	src/shogun/converter/EmbeddingConverter.cpp
| A	src/shogun/converter/EmbeddingConverter.h
| A	src/shogun/converter/HessianLocallyLinearEmbedding.cpp
| A	src/shogun/converter/HessianLocallyLinearEmbedding.h
| A	src/shogun/converter/Isomap.cpp
| A	src/shogun/converter/Isomap.h
| A	src/shogun/converter/KernelLocalTangentSpaceAlignment.cpp
| A	src/shogun/converter/KernelLocalTangentSpaceAlignment.h
| A	src/shogun/converter/KernelLocallyLinearEmbedding.cpp
| A	src/shogun/converter/KernelLocallyLinearEmbedding.h
| A	src/shogun/converter/LaplacianEigenmaps.cpp
| A	src/shogun/converter/LaplacianEigenmaps.h
| A	src/shogun/converter/LocalTangentSpaceAlignment.cpp
| A	src/shogun/converter/LocalTangentSpaceAlignment.h
| A	src/shogun/converter/LocallyLinearEmbedding.cpp
| A	src/shogun/converter/LocallyLinearEmbedding.h
| A	src/shogun/converter/MultidimensionalScaling.cpp
| A	src/shogun/converter/MultidimensionalScaling.h
| M	src/shogun/features/SimpleFeatures.cpp
| M	src/shogun/features/SimpleFeatures.h
| D	src/shogun/preprocessor/DiffusionMaps.cpp
| D	src/shogun/preprocessor/DiffusionMaps.h
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| D	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| D	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| D	src/shogun/preprocessor/Isomap.cpp
| D	src/shogun/preprocessor/Isomap.h
| D	src/shogun/preprocessor/KernelLocalTangentSpaceAlignment.cpp
| D	src/shogun/preprocessor/KernelLocalTangentSpaceAlignment.h
| D	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| D	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/KernelPCA.cpp
| M	src/shogun/preprocessor/KernelPCA.h
| D	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| D	src/shogun/preprocessor/LaplacianEigenmaps.h
| D	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| D	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| D	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| D	src/shogun/preprocessor/LocallyLinearEmbedding.h
| D	src/shogun/preprocessor/MultidimensionalScaling.cpp
| D	src/shogun/preprocessor/MultidimensionalScaling.h
| M	src/shogun/preprocessor/PCA.cpp
| M	src/shogun/preprocessor/PCA.h
|  
* commit 78c869446f14dc958fa368e2e2e56cf4eba555c6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 14 00:13:00 2011 +0200
| 
|     fix documentation of clean_feature_vectors
| 
| M	src/shogun/features/StringFeatures.h
|  
* commit 6356f267c5a42d00a3041519afee9f8b26d037e4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 13 23:34:43 2011 +0200
| 
|     fix static octave examples
| 
| M	examples/undocumented/matlab_and_octave/classifier_lpboost.m
| M	examples/undocumented/matlab_and_octave/classifier_lpm.m
| M	examples/undocumented/matlab_and_octave/kernel_linearbyte.m
|  
* commit 18a93b9c4ed78280317dce0c5b8f97f544a29861
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 13 23:34:18 2011 +0200
| 
|     always set dot feature property on init
| 
| M	src/shogun/features/DotFeatures.cpp
|  
* commit 12a51735895c3741bbcce54e9d6117ef736590cf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 13 23:33:42 2011 +0200
| 
|     introduce more efficient cleanup_feature_vectors function
| 
| M	src/shogun/features/StringFeatures.cpp
| M	src/shogun/features/StringFeatures.h
|  
* commit a6e49bb8f7b569ccf155df3b82cb16dc535f1462
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 13 23:31:39 2011 +0200
| 
|     fix broken free_feature_vector call in wdsvmocas
| 
| M	src/shogun/classifier/svm/WDSVMOcas.h
|  
* commit 74bf29729a5ebedc27a5ce6df2b771fea2e7278f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 13 23:30:43 2011 +0200
| 
|     fix lhs / rhs mixup in free_feature_vector (how did this ever work?!)
| 
| M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
|  
* commit 1d5d860297a8cabc3fe3b2a94d4936307a9ea3ab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 13 11:10:03 2011 +0200
| 
|     Fix a bug in cache_multiple_kernel_row that gets triggered when support vector regression is performed with svr light and multiple threads.
| 
| M	src/shogun/kernel/Kernel.cpp
|  
* commit 3e2add72db24a0f5f7392ba1df782760142e01a3
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Oct 12 23:45:48 2011 +0400
| 
|     Added automatic k choosing LLE example
| 
| A	examples/undocumented/python_modular/graphical/lle_auto_k.py
|  
* commit 363a4038a578fb76e682d6db4ed4ce4b25707dc4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 12 16:44:50 2011 +0200
| 
|     update NEWS
| 
| M	src/NEWS
|  
* commit 49c5ef74e596f861e78eb8b98b5abe4e9cda4e3b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 12 16:12:55 2011 +0200
| 
|     use SGVector<char> as workaround for SGVector<void>
| 
| M	src/shogun/features/Features.h
| M	src/shogun/modelselection/ModelSelectionParameters.cpp
| M	src/shogun/modelselection/ModelSelectionParameters.h
|  
* commit 2440e3a376abc7a491b304ef6207ae111d72d4ab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 12 15:48:14 2011 +0200
| 
|     use SGVector<char> instead of SGVector<void> as a workaround
| 
| M	src/shogun/base/Parameter.cpp
|  
* commit f2e51da860bdc434441feb9477908e785c6c8b73
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 12 06:37:14 2011 +0200
| 
|     fix elwms.so install
| 
| M	src/Makefile.template
|  
* commit 1d41eeb0cf9e26692852b83e38ecbe86655315db
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Oct 12 02:15:24 2011 +0400
| 
|     Added optimal k determination routines to LLE
| 
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.h
|  
* commit dbad0b5b45c555d41ac0e1ad41b414bb5ce8049c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 11 22:43:44 2011 +0200
| 
|     fix install permissions of jar / dll to be non-exec
| 
| M	src/Makefile.template
|  
* commit 8182e5c5201a673e313c1d2bbd0a924695e98b05
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 11 20:56:36 2011 +0200
| 
|     create jni dir on make install
| 
| M	src/Makefile.template
|  
* commit 184fcc0d911350ba017b01bdd09e59e5538253e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 11 19:21:15 2011 +0200
| 
|     fix ruby install dir
| 
| M	src/Makefile.template
|  
* commit 9b38b33c63f450ec4e777e2eaf45deea3b5cd116
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 11 14:36:03 2011 +0200
| 
|     Create proper .dll's for csharp interface and add proper make install
|     targets for java and c# installing into /usr/lib/jni /usr/lib/cil/shogun
|     respectively
| 
| M	examples/undocumented/csharp_modular/check.sh
| M	src/Makefile.template
|  
* commit 01b75c8ea0c3a025e4789cc5a9b6d568b7b3f62c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 11 12:25:03 2011 +0200
| 
|     Fix installation
|     
|     - Add forgotten DESTDIR prefix to lua target
|     - Rename PYTHON_TARGET -> PYTHON_STATIC_TARGET etc
| 
| M	src/Makefile.template
|  
* commit dea9a1dee0f7da16ee4dc1818a587513e250e2b6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 11 06:37:38 2011 +0200
| 
|     Fix elwms include in python/octave/r interfaces
| 
| M	src/interfaces/octave_static/OctaveInterface.cpp
| M	src/interfaces/python_static/PythonInterface.cpp
| M	src/interfaces/r_static/RInterface.cpp
|  
* commit 5dd8dec208c54fff51f7e844b3c72be67639ecee
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Oct 11 02:04:04 2011 +0400
| 
|     Fixed KLLE initialization
| 
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
|  
* commit a92e6b460ff6bcc0725026bc3f02653072aefa44
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Oct 11 01:39:00 2011 +0400
| 
|     Revert "Removed wrong copyrights from preprocessors developed after GSoC"
|     
|     This reverts commit f6d08c2226fd1b297744a4c7379fc7f180d6d60e.
| 
| M	src/shogun/preprocessor/DiffusionMaps.h
| M	src/shogun/preprocessor/KernelLocalTangentSpaceAlignment.h
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/LaplacianEigenmaps.h
|  
* commit f6d08c2226fd1b297744a4c7379fc7f180d6d60e
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Oct 11 01:35:57 2011 +0400
| 
|     Removed wrong copyrights from preprocessors developed after GSoC
| 
| M	src/shogun/preprocessor/DiffusionMaps.h
| M	src/shogun/preprocessor/KernelLocalTangentSpaceAlignment.h
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/LaplacianEigenmaps.h
|  
* commit 77efd4c71fa23a5f8b64fac1714976378efc620d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 10 23:04:50 2011 +0200
| 
|     Fix include paths for elwms interface.
| 
| M	src/interfaces/elwms_static/elwms.cpp
|  
* commit 00b7950c89654496a13ff289d9f264f5ff717204
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Oct 11 01:12:07 2011 +0400
| 
|     Cleaned DR preprocessors, removed effective target dim computation
| 
| M	src/shogun/preprocessor/DiffusionMaps.cpp
| M	src/shogun/preprocessor/DiffusionMaps.h
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/Isomap.cpp
| M	src/shogun/preprocessor/Isomap.h
| M	src/shogun/preprocessor/KernelLocalTangentSpaceAlignment.cpp
| M	src/shogun/preprocessor/KernelLocalTangentSpaceAlignment.h
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| M	src/shogun/preprocessor/MultidimensionalScaling.h
|  
* commit 85a967cd1fb02c29f08cf7d77cb8ac7bf302c845
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 9 18:33:48 2011 +0400
| 
|     BLASed KLLE a little
| 
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
|  
* commit 79758f39ad18a5891ab627af8b1a8b69abf31979
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 9 18:33:34 2011 +0400
| 
|     Added use_arpack option for LLE, BLASed it a little more
| 
| M	src/shogun/preprocessor/Isomap.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.h
|  
* commit fa8405f583c50cac2c3658920f0980b329382fe8
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 9 00:02:39 2011 +0400
| 
|     Mention SUPERLU and KLTSA, KLLE
| 
| M	src/NEWS
|  
* commit e13b169780851d4bb5993e955986e6d332f838fe
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 9 00:00:04 2011 +0400
| 
|     Initialized helper arrays at arpack wrapper to avoid warnings
| 
| M	src/shogun/mathematics/arpack_d.cpp
| M	src/shogun/mathematics/arpack_s.cpp
|  
* commit 884c74a9a1cf6ebe7685a2530c265915e2eeceab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 8 21:55:48 2011 +0200
| 
|     move regression .h functions to .cpp
| 
| M	src/shogun/regression/svr/LibSVR.cpp
| M	src/shogun/regression/svr/LibSVR.h
| M	src/shogun/regression/svr/SVRLight.cpp
| M	src/shogun/regression/svr/SVRLight.h
|  
* commit 9b410c9c7bdbc9f9b25fc9b43b9c15298e05bc92
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 8 21:46:14 2011 +0200
| 
|     update NEWS file for 1.1
| 
| M	src/NEWS
|  
* commit e927318ac2592071d94e8da5eaa399c332b3d965
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 8 14:34:56 2011 +0400
| 
|     Moved code from .h to .cpp at CMachine
| 
| M	src/shogun/machine/Machine.cpp
| M	src/shogun/machine/Machine.h
|  
* commit 2382e0ca6850093f14000316bcabc4147ea370fc
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 8 14:34:24 2011 +0400
| 
|     Added necessary Math.h include to GNB
| 
| M	src/shogun/classifier/GaussianNaiveBayes.h
|  
* commit 5a4f2de1582b4ef41497269bee111250a067f5dc
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 8 02:14:46 2011 +0400
| 
|     Finally added missing libshogun tests for DR preprocessors (no leaks)
| 
| M	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/preprocessor_diffusionmaps.cpp
| M	examples/undocumented/libshogun/preprocessor_hessianlocallylinearembedding.cpp
| A	examples/undocumented/libshogun/preprocessor_isomap.cpp
| M	examples/undocumented/libshogun/preprocessor_kernellocallylinearembedding.cpp
| M	examples/undocumented/libshogun/preprocessor_kernellocaltangentspacealignment.cpp
| A	examples/undocumented/libshogun/preprocessor_laplacianeigenmaps.cpp
| M	examples/undocumented/libshogun/preprocessor_locallylinearembedding.cpp
| M	examples/undocumented/libshogun/preprocessor_localtangentspacealignment.cpp
| A	examples/undocumented/libshogun/preprocessor_multidimensionalscaling.cpp
|  
* commit b86e64fc35597b53b5c23f5254e8d695472ffcd1
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 8 01:59:13 2011 +0400
| 
|     Added libshogun examples for KLTSA and KLLE
| 
| M	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/preprocessor_kernellocallylinearembedding.cpp
| A	examples/undocumented/libshogun/preprocessor_kernellocaltangentspacealignment.cpp
|  
* commit a4454cb83a42c569f1db04b1542c6f377a4ed88d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 8 01:58:02 2011 +0400
| 
|     Fixed memory leak at KLTSA
| 
| M	src/shogun/preprocessor/KernelLocalTangentSpaceAlignment.cpp
|  
* commit 8d47d143e327bc18e84ce37f82cb6ca3fa7c3730
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 8 01:41:46 2011 +0400
| 
|     Got rid of memory error at DiffusionMaps
| 
| M	src/shogun/preprocessor/DiffusionMaps.cpp
|  
* commit 5f2a5c84f636aa87b5bba374c3b1f0b437b6c3a6
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 8 01:17:28 2011 +0400
| 
|     Added some notes to preprocessors
| 
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/KernelLocalTangentSpaceAlignment.h
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| M	src/shogun/preprocessor/MultidimensionalScaling.h
|  
* commit a0cc5518a9ccbd2870f01e7d03250ebb468d881b
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Oct 4 22:35:41 2011 +0400
| 
|     Introduced two shifts to customize LLE algorithm processing
| 
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.h
|  
* commit 5fab1f0d9b6aa4238c3dd4760a022df013c95bbb
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Oct 4 19:25:13 2011 +0400
| 
|     Made DimensionReductionPreprocessor class templated, adapted existing preprocessors to the new structure
| 
| M	src/interfaces/modular/Preprocessor.i
| M	src/shogun/preprocessor/DiffusionMaps.cpp
| M	src/shogun/preprocessor/DiffusionMaps.h
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| M	src/shogun/preprocessor/KernelPCA.cpp
| M	src/shogun/preprocessor/KernelPCA.h
| M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| M	src/shogun/preprocessor/LaplacianEigenmaps.h
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| M	src/shogun/preprocessor/MultidimensionalScaling.h
| M	src/shogun/preprocessor/PCA.cpp
| M	src/shogun/preprocessor/PCA.h
|  
* commit c0c4231f62e491fc1f02d34444ef4d4340e887e4
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Oct 3 04:41:47 2011 +0400
| 
|     Added C++ tests for LLE basic algorithms
| 
| M	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/preprocessor_hessianlocallylinearembedding.cpp
| A	examples/undocumented/libshogun/preprocessor_locallylinearembedding.cpp
| A	examples/undocumented/libshogun/preprocessor_localtangentspacealignment.cpp
|  
* commit 2f5de9db6604ac8d0de6029da1f6fc73825c2b30
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Oct 3 04:40:47 2011 +0400
| 
|     Various small fixes for LLE algorithms and dim reduction preprocessor base class
| 
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
|  
* commit 63ecfe8045739f6aad5b8a8b93bbdc6e4be471e6
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Oct 3 02:01:48 2011 +0400
| 
|     Introduced kernelized LTSA
| 
| A	examples/undocumented/python_modular/preprocessor_kernellocaltangentspacealignment_modular.py
| M	src/interfaces/modular/Preprocessor.i
| M	src/interfaces/modular/Preprocessor_includes.i
| A	src/shogun/preprocessor/KernelLocalTangentSpaceAlignment.cpp
| A	src/shogun/preprocessor/KernelLocalTangentSpaceAlignment.h
| M	src/shogun/preprocessor/Preprocessor.h
|  
* commit 88eeab8a0de197f86b6f9105fbcdd39d65c31db2
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Oct 3 01:59:48 2011 +0400
| 
|     Changed default kernel for DR preprocessor base class
| 
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
|  
* commit 61c4de949875796d369eee3872c355a8804f9d64
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Oct 3 01:59:26 2011 +0400
| 
|     Unified Kernel LLE and LLE regularization parameter
| 
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
|  
* commit 9698ed39c8a10653430825b20fd613191f546f91
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 2 22:50:21 2011 +0400
| 
|     Some necessary improvements from the reverted commit
| 
| M	src/shogun/preprocessor/Isomap.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
|  
* commit 15ebd97e8917cb6771526c4c3b2c554836a26e47
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 2 22:37:40 2011 +0400
| 
|     Revert "Improved multithreading codestyle, fixes some structure"
|     
|     This reverts commit 51eeb3d7aeaebeb41297d6db822a073d03679e6b.
| 
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/Isomap.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/MultidimensionalScaling.cpp
|  
* commit 51eeb3d7aeaebeb41297d6db822a073d03679e6b
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 2 22:14:00 2011 +0400
| 
|     Improved multithreading codestyle, fixes some structure
| 
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/Isomap.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/MultidimensionalScaling.cpp
|  
* commit 246ccf6723429cc94b613b52f06c3bc7c6265877
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 2 22:12:14 2011 +0400
| 
|     Fixed wrong destruction of DR preprocessor base class
| 
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
|  
* commit 85dadcf928260433d4b8e9c1a815d92456b897f7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 1 19:44:42 2011 +0200
| 
|     move inline functions from .h to .cpp
| 
| M	src/interfaces/modular/Library.i
| M	src/interfaces/modular/SGBase.i
| M	src/shogun/base/Parallel.cpp
| M	src/shogun/base/Parallel.h
| M	src/shogun/base/Version.cpp
| M	src/shogun/base/Version.h
|  
* commit e338daa55cf4c1f8972cdcd57b4f58ad936849da
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 1 19:17:20 2011 +0400
| 
|     Fixed and improved KLLE
| 
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
|  
* commit b4611da37437688e142f8a7d2a84ffc5c67867c8
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 1 16:52:39 2011 +0400
| 
|     Moved code from .h to .cpp for NLDR preprocessors
| 
| M	src/shogun/preprocessor/DiffusionMaps.cpp
| M	src/shogun/preprocessor/DiffusionMaps.h
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/Isomap.cpp
| M	src/shogun/preprocessor/Isomap.h
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| M	src/shogun/preprocessor/LaplacianEigenmaps.h
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| M	src/shogun/preprocessor/MultidimensionalScaling.h
|  
* commit 7314dafbad87c832ca566b62b1ae2189f5ea882a
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 1 16:16:22 2011 +0400
| 
|     Fixed wrong effective target dimensionality threshold
| 
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
|  
* commit 3d5000c40af6c15a699e4a3b3329b140eb01667f
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 1 16:14:38 2011 +0400
| 
|     Added common.h include for arpack wrap impl
| 
| M	src/shogun/mathematics/arpack.cpp
|  
* commit 3f082b3c2938273e57381e8cf6a868549669aefe
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 1 16:02:07 2011 +0400
| 
|     Updated ARPACK and LAPACK libshogun examples
| 
| M	examples/undocumented/libshogun/mathematics_arpack.cpp
| M	examples/undocumented/libshogun/mathematics_lapack.cpp
|  
* commit a945b61abe960bc54673c2fa6ee9f443e9fca43d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 1 16:01:37 2011 +0400
| 
|     Made arpack wrapper templated, updated preprocessors according to new structure
| 
| A	src/shogun/mathematics/arpack.cpp
| A	src/shogun/mathematics/arpack.h
| M	src/shogun/mathematics/arpack_d.cpp
| M	src/shogun/mathematics/arpack_d.h
| M	src/shogun/mathematics/arpack_s.cpp
| M	src/shogun/mathematics/arpack_s.h
| M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/MultidimensionalScaling.cpp
|  
* commit af8865a8c205f26c009fa1c36eb55ac7be17edd5
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 1 03:19:31 2011 +0400
| 
|     Added dummy doc to avoid some warnings at HistogramIntersectionKernel and DataType
| 
| M	src/shogun/kernel/HistogramIntersectionKernel.h
| M	src/shogun/lib/DataType.h
|  
* commit 0f94ec8f886ec43448c8758df60ce421a9b54137
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 1 03:09:04 2011 +0400
| 
|     Implement clapack single precision routines wrappers
| 
| M	src/shogun/mathematics/lapack.cpp
| M	src/shogun/mathematics/lapack.h
|  
* commit 90d5064b7823449697c4e4dde618fc6620d439d3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 1 00:58:23 2011 +0200
| 
|     fix multithreading error w/ svr light
| 
| M	src/shogun/kernel/Kernel.cpp
|  
* commit 57e582d88a3e62c7cff641bac22fac52c093bf74
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 1 02:14:20 2011 +0400
| 
|     Fixed wrong include at arpack double
| 
| M	src/shogun/mathematics/arpack_d.cpp
|  
* commit ea5f083bddd49ee43b74f4947f65d75f7e594e9d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 1 00:08:53 2011 +0400
| 
|     Removed wrong include from KLLE
| 
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
|    
*   commit 236bb14beba9e5363fc9fe70f16c7f9147140b2b
|\  Merge: f55f818 b6d03b7
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Oct 1 00:02:50 2011 +0400
| | 
| |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| |   
| * commit b6d03b7bd4a04046a1de279c0168fd7c184ede83
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Sep 30 21:16:43 2011 +0200
| | 
| |     move inline functions from .h to .cpp
| | 
| | M	src/shogun/clustering/GMM.cpp
| | M	src/shogun/clustering/GMM.h
| | M	src/shogun/clustering/Hierarchical.cpp
| | M	src/shogun/clustering/Hierarchical.h
| | M	src/shogun/clustering/KMeans.cpp
| | M	src/shogun/clustering/KMeans.h
| |   
| * commit b18d7b5a9c7cdf592cea5d142cf6b2f184af537c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Sep 30 08:26:13 2011 +0200
| | 
| |     fix type pkg-config2 -> pkg-config
| | 
| | M	src/configure
| |   
| * commit 1f78185a450c778305260b5deb99b59f097e2774
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Sep 30 08:24:23 2011 +0200
| | 
| |     require pkg-config in configure
| | 
| | M	src/configure
| |   
| * commit 7bb0e515d077487ee96132dbf2630c48233f06a3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Sep 30 08:16:23 2011 +0200
| | 
| |     add lgammal detection to configure
| | 
| | M	src/configure
| | M	src/shogun/mathematics/Math.h
| |   
* | commit f55f81887638779825807d401df041836ed167cb
|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|   Date:   Sat Oct 1 00:01:47 2011 +0400
|   
|       Added single precision LAPACK and ARPACK support, changed preprocessors according to new interface
|   
|   D	src/shogun/mathematics/arpack.cpp
|   D	src/shogun/mathematics/arpack.h
|   A	src/shogun/mathematics/arpack_d.cpp
|   A	src/shogun/mathematics/arpack_d.h
|   A	src/shogun/mathematics/arpack_s.cpp
|   A	src/shogun/mathematics/arpack_s.h
|   M	src/shogun/mathematics/lapack.cpp
|   M	src/shogun/mathematics/lapack.h
|   M	src/shogun/preprocessor/DiffusionMaps.cpp
|   M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
|   M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
|   M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
|   M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
|   M	src/shogun/preprocessor/MultidimensionalScaling.cpp
|  
* commit 95df0a502cdba1113153c6499cb952fa8b939c3d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Sep 30 03:25:09 2011 +0400
| 
|     Added support of target dimensionality reducing with negative target dimensionality, improved some issues at NLDR preprocessors
| 
| M	src/shogun/preprocessor/DiffusionMaps.cpp
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/Isomap.cpp
| M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| M	src/shogun/preprocessor/Preprocessor.h
|  
* commit 4889edc1bfb7b1ad81c2142264235412c337328d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 27 09:22:53 2011 +0200
| 
|     change API in histogram intersection kernel
|     
|     it can now be more conveniently inited with
|     
|     HistogramIntersectionKernel(f1,f2, beta, cachesz)
| 
| M	src/shogun/kernel/HistogramIntersectionKernel.cpp
| M	src/shogun/kernel/HistogramIntersectionKernel.h
|  
* commit 42b836a76ca6846f1f212fb3fb167d087ef9fda0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 27 09:22:32 2011 +0200
| 
|     use all available CPUs by default
| 
| M	src/shogun/base/Parallel.cpp
|  
* commit 95c854ac7c337a69e2df47a33203cb8c57964e5e
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Sep 27 01:49:22 2011 +0400
| 
|     BLASed HLLE
| 
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
|  
* commit fda999c4fceb7ff5a9fb0f91845439581b2800d7
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Sep 27 01:02:14 2011 +0400
| 
|     BLASed LTSA
| 
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
|  
* commit 2a16c52a28e165c10a3b369a24d9085d6e65882f
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Sep 26 23:50:45 2011 +0400
| 
|     Updated swissroll and hemisphere graphical NLDR examples
| 
| M	examples/undocumented/python_modular/graphical/hemisphere.py
| M	examples/undocumented/python_modular/graphical/swissroll.py
|  
* commit cf86e1b33264d3679e9838ea12ecc1585cfce0d7
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Sep 26 23:50:10 2011 +0400
| 
|     Removed junk ctime usage from Diffusion Maps preprocessor
| 
| M	src/shogun/preprocessor/DiffusionMaps.cpp
|  
* commit 0f76c54fd1b8f9b783f913b2a6decee0a76c3076
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Sep 26 23:49:45 2011 +0400
| 
|     Refactored LLE algorithms for code reuse
| 
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.h
|  
* commit 140237b64a27898db321a23a9491566da49595a4
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Sep 26 23:49:11 2011 +0400
| 
|     Added getters for distance and kernel at DR preprocessor
| 
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
|  
* commit af3211a6e2c10154b90fd399caa4f46dbabd3137
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Sep 26 23:17:22 2011 +0400
| 
|     Removed memory leak @ FibonacciHeap
| 
| M	src/shogun/lib/FibonacciHeap.cpp
|  
* commit 32b654e2d26856fab965a2f74872167aa08f1343
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 26 17:16:59 2011 +0200
| 
|     add two more c# examples translated by daniel
| 
| A	examples/undocumented/csharp_modular/features_snp_modular.cs
| A	examples/undocumented/csharp_modular/features_string_hashed_wd_modular.cs
|    
*   commit 0cadbbdb7ff2f4ecfd57f5fe0a7c852d53d53edb
|\  Merge: f7ee9b8 70eff01
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Sep 26 17:10:36 2011 +0200
| | 
| |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| |   
| * commit 70eff01c15159f1f7cde0a3c610061722b174d6f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Sep 26 15:41:23 2011 +0200
| | 
| |     add toy example to illustrate how to use CTime
| | 
| | A	examples/undocumented/python_modular/library_time.py
| |   
| * commit 0c743b2d390c3d3949eb4954f35fbb8d2fdca4ae
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Sep 26 15:24:59 2011 +0200
| | 
| |     parallelize all libsvm learners
| |     
| |     however, speedup is really only marginal.
| | 
| | M	src/shogun/classifier/svm/SVM_libsvm.cpp
| |   
| * commit df28c58dd63dc9e9eb370eae83b5de8790926874
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Sep 26 14:20:05 2011 +0200
| | 
| |     add virtual destructors to fix compiler warning
| | 
| | M	src/shogun/lib/DataType.h
| |   
| * commit dce18b65da065ad08b440182c237e7e03447083a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Sep 26 14:19:21 2011 +0200
| | 
| |     fix compiler warning about downcast to int32_t
| |     
| |     in the end we just change the variable type to float64_t
| | 
| | M	src/shogun/classifier/KNN.cpp
| |   
| * commit 138b2e179bb04b994d14183834604ea9a7733108
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Sep 26 14:05:32 2011 +0200
| | 
| |     include <string> to fix compile error
| | 
| | M	src/shogun/kernel/MultitaskKernelMaskNormalizer.h
| |   
| * commit 7a631af221f726a63ff27b5d9866512d4a320bb5
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Sep 26 13:56:39 2011 +0200
| | 
| |     enable threaded parallelization for libsvm
| | 
| | M	src/shogun/classifier/svm/SVM_libsvm.cpp
| |   
| * commit 13468eb26e2c5a209d71c3987d4ef2b096e8ff04
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Sep 26 13:56:18 2011 +0200
| | 
| |     remove std::vector usage and replace it with SGVector
| | 
| | M	src/shogun/kernel/Kernel.h
| | M	src/shogun/kernel/MultitaskKernelMaskNormalizer.h
| |   
| * commit b1043b038d139450a0d29407686daa3499851d44
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Sep 26 09:34:29 2011 +0200
| | 
| |     disable compiler optimizations for swig interface
| | 
| | M	src/configure
| |     
* |   commit f7ee9b81e0bb25ec223bd1c5d19657a520fb1244
|\ \  Merge: e2a642d f634c62
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Sun Sep 25 22:20:39 2011 +0200
| |   
| |       Merge branch 'master' of github.com:shogun-toolbox/shogun
| |   
| * commit f634c62f48a886b67539bd8637e6fcd648dc6f13
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Sep 26 00:19:10 2011 +0400
| | 
| |     Removed unnecessary sse flags
| | 
| | M	src/configure
| |   
| * commit a6426c4ed5c068e494f6d4a04b57166f6734c970
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Sep 25 23:37:39 2011 +0400
| | 
| |     Moved set/get code from .h to .cpp for DR preprocessors
| | 
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/Isomap.h
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| | M	src/shogun/preprocessor/MultidimensionalScaling.h
| |     
* |   commit e2a642d6e33b4f30575df3426b01007ed3232eac
|\ \  Merge: 5f312d4 75685b6
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Sun Sep 25 19:54:55 2011 +0200
| |   
| |       Merge branch 'master' of github.com:shogun-toolbox/shogun
| |   
| * commit 75685b677239c01daa484e67323f219dc6b2563a
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Sep 25 19:40:24 2011 +0400
| | 
| |     Removed junk from LLE
| | 
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| |   
| * commit 16e761af932fc17af25b65db851c335bbfd511e2
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Sep 25 19:09:38 2011 +0400
| | 
| |     Updated [] for SGMatrix and made it used by DR preprocessors
| | 
| | M	src/shogun/lib/DataType.h
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| |   
| * commit 26423550a1f8941a8f136967ee340fd0dd4afa02
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Sep 25 18:31:07 2011 +0400
| | 
| |     Added [] for SGMatrix
| | 
| | M	src/shogun/lib/DataType.h
| |   
| * commit d6ac38d223246afa999057c46e80f782cc69af73
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Sep 25 18:29:57 2011 +0400
| | 
| |     Fixed mistype at configure, changed flags
| | 
| | M	src/configure
| |   
| * commit 134f8631a9dd57a900def42797fe93ea2a0604e2
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Sep 25 15:34:15 2011 +0400
| | 
| |     Improved memory usage efficiency in DR preprocessor
| | 
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| |   
| * commit 3f81b07f4716de1b5c40f801d81a62bf071b7732
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Sep 25 13:57:24 2011 +0400
| | 
| |     Added MSSE{1,2,3} flags to configure
| | 
| | M	src/configure
| | M	src/shogun/preprocessor/KernelPCA.h
| |   
| * commit 544c9206b3e5de44b56bb31c1a886f88a8a03e7e
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Sep 25 01:12:31 2011 +0400
| | 
| |     Improved performance and fixed Diffusion Maps
| | 
| | M	src/shogun/preprocessor/DiffusionMaps.cpp
| |   
| * commit 330830136032e879a447b171e5185a49e90f2bb9
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Sep 24 22:45:46 2011 +0400
| | 
| |     Introduced DiffusionMaps dimension reduction preprocessor
| | 
| | A	examples/undocumented/python_modular/preprocessor_diffusionmaps_modular.py
| | M	src/interfaces/modular/Preprocessor.i
| | M	src/interfaces/modular/Preprocessor_includes.i
| | A	src/shogun/preprocessor/DiffusionMaps.cpp
| | A	src/shogun/preprocessor/DiffusionMaps.h
| | M	src/shogun/preprocessor/Preprocessor.h
| |   
* | commit 5f312d43d99e897aa90969ff904097675cd3f230
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Sat Sep 24 21:57:14 2011 +0200
|   
|       fix documentation in set_w
|   
|   M	src/shogun/machine/LinearMachine.h
|  
* commit be97a434d66387f8776e7a374c52e7f282731d3b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Sep 24 19:56:36 2011 +0200
| 
|     fix mixup of epsilon / tube epsilon in libsvr examples
| 
| M	examples/undocumented/java_modular/regression_libsvr_modular.java
| M	examples/undocumented/python_modular/regression_libsvr_modular.py
| M	examples/undocumented/ruby_modular/regression_libsvr_modular.rb
|  
* commit 826ff44c8d6cd0c6f70bb4c88e89d8e0fb6a59ee
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Sep 24 21:35:53 2011 +0400
| 
|     Removed unnecessary includes in arpack.{cpp,h}
| 
| M	src/shogun/mathematics/arpack.cpp
| M	src/shogun/mathematics/arpack.h
|  
* commit 0b4a6dd10705f6e22e3dccc57fe877022728605d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Sep 24 00:23:03 2011 +0400
| 
|     Fixed linecount in makefile
| 
| M	src/Makefile
|  
* commit 9780d20f576a165489176d0396466a1d4ea7f1d8
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Sep 23 22:17:09 2011 +0400
| 
|     Fixed get_w routine parameters in LinearMachine
| 
| M	src/shogun/classifier/svm/SVMLin.cpp
| M	src/shogun/machine/LinearMachine.h
| M	src/shogun/ui/SGInterface.cpp
|  
* commit dd4e99f31a0c899aeba63570bb482d434dd0e2cb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 22 17:34:22 2011 +0200
| 
|     add new .cs examples from daniel
| 
| A	examples/undocumented/csharp_modular/classifier_gaussiannaivebayes_modular.cs
| A	examples/undocumented/csharp_modular/classifier_gmnpsvm_modular.cs
| A	examples/undocumented/csharp_modular/classifier_gpbtsvm_modular.cs
| A	examples/undocumented/csharp_modular/classifier_knn_modular.cs
| A	examples/undocumented/csharp_modular/classifier_larank_modular.cs
| A	examples/undocumented/csharp_modular/classifier_lda_modular.cs
| A	examples/undocumented/csharp_modular/classifier_liblinear_modular.cs
| A	examples/undocumented/csharp_modular/classifier_libsvmmulticlass_modular.cs
| A	examples/undocumented/csharp_modular/classifier_libsvmoneclass_modular.cs
| A	examples/undocumented/csharp_modular/classifier_libsvn_modular.cs
|  
* commit b73b2c192f24bd7531fce82ebef5e01618f04ac9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 22 17:31:44 2011 +0200
| 
|     add some helper functions like clear vector, fill vector etc to SGVector
|     
|     This unfortunately causes conflicts w/ modelselection that using
|     SGVector<void>. Until ms is resolved to use sth else it will remain broken.
| 
| M	src/shogun/base/Parameter.cpp
| M	src/shogun/features/Features.cpp
| M	src/shogun/features/Features.h
| M	src/shogun/lib/DataType.h
| M	src/shogun/mathematics/Math.h
| M	src/shogun/modelselection/ModelSelectionParameters.cpp
| M	src/shogun/modelselection/ModelSelectionParameters.h
|  
* commit b879040e1ca3146eb587e81f12d6a2b800f2c925
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Thu Sep 22 00:21:12 2011 +0400
| 
|     Fixed doc in LLE
| 
| M	src/shogun/preprocessor/LocallyLinearEmbedding.h
|  
* commit 13a48a8e1a971f7e6525806f85ab5e83df4d23b3
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Thu Sep 22 00:20:58 2011 +0400
| 
|     Improved ARPACK+SUPERLU integration
| 
| M	src/shogun/mathematics/arpack.cpp
|  
* commit c738a0082419f35324e2ecd5ab142ed453d87da6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 21 21:16:11 2011 +0200
| 
|     Revert "remove unneeded class definitions from .h files"
|     
|     This reverts commit ff5f5457454e0036465ad714cc10dad2949696c9.
| 
| M	src/shogun/classifier/LDA.h
| M	src/shogun/classifier/svm/WDSVMOcas.h
| M	src/shogun/distance/CanberraMetric.h
| M	src/shogun/distance/HammingWordDistance.h
| M	src/shogun/distance/SparseEuclidianDistance.h
| M	src/shogun/distributions/HMM.h
| M	src/shogun/distributions/Histogram.h
| M	src/shogun/kernel/AUCKernel.h
| M	src/shogun/kernel/CommUlongStringKernel.h
| M	src/shogun/kernel/HistogramWordStringKernel.h
| M	src/shogun/kernel/Kernel.h
| M	src/shogun/kernel/PyramidChi2.h
| M	src/shogun/modelselection/ModelSelectionParameters.cpp
| M	src/shogun/modelselection/ModelSelectionParameters.h
| M	src/shogun/modelselection/ParameterCombination.cpp
| M	src/shogun/structure/DynProg.h
| M	src/shogun/structure/PlifMatrix.h
| M	src/shogun/structure/SegmentLoss.h
|  
* commit 00f777798e47982a81931c084d4cef323e11d98c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 21 20:49:56 2011 +0200
| 
|     add forgotten .cpp files
| 
| A	src/shogun/preprocessor/DecompressString.cpp
| A	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
| A	src/shogun/preprocessor/SimplePreprocessor.cpp
|  
* commit b3eccafdb9b99901303bd19934cd254f4bfd1fcb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 21 20:44:29 2011 +0200
| 
|     move implementions from .h to .cpp in preprocessors
| 
| M	src/shogun/features/SparseFeatures.cpp
| M	src/shogun/features/StringFeatures.cpp
| M	src/shogun/preprocessor/DecompressString.h
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| M	src/shogun/preprocessor/MultidimensionalScaling.h
| M	src/shogun/preprocessor/SimplePreprocessor.h
|  
* commit 8e32b0de6276a98546786dac5d6c687584ccb7c1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 20 21:11:41 2011 +0200
| 
|     fix wrong assertion in alphabet causing some model selection examples to fail
| 
| M	src/shogun/features/Alphabet.cpp
|  
* commit ff5f5457454e0036465ad714cc10dad2949696c9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 20 21:02:03 2011 +0200
| 
|     remove unneeded class definitions from .h files
| 
| M	src/shogun/classifier/LDA.h
| M	src/shogun/classifier/svm/WDSVMOcas.h
| M	src/shogun/distance/CanberraMetric.h
| M	src/shogun/distance/HammingWordDistance.h
| M	src/shogun/distance/SparseEuclidianDistance.h
| M	src/shogun/distributions/HMM.h
| M	src/shogun/distributions/Histogram.h
| M	src/shogun/kernel/AUCKernel.h
| M	src/shogun/kernel/CommUlongStringKernel.h
| M	src/shogun/kernel/HistogramWordStringKernel.h
| M	src/shogun/kernel/Kernel.h
| M	src/shogun/kernel/PyramidChi2.h
| M	src/shogun/modelselection/ModelSelectionParameters.cpp
| M	src/shogun/modelselection/ModelSelectionParameters.h
| M	src/shogun/modelselection/ParameterCombination.cpp
| M	src/shogun/structure/DynProg.h
| M	src/shogun/structure/PlifMatrix.h
| M	src/shogun/structure/SegmentLoss.h
|  
* commit 0af90765921161176a8d97b8f59d1c157095450e
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Sep 20 02:36:16 2011 +0400
| 
|     SUPERLU+ARPACK integration
| 
| M	src/shogun/mathematics/arpack.cpp
|  
* commit 8b3602c1f1c7eadfb9d791ec1df9f0ba1e215065
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Sep 20 02:35:58 2011 +0400
| 
|     Restored regularization at Laplacian Eigenmaps
| 
| M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
|  
* commit a176859827623526286c83ad64fc86e3160d2c68
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Sep 20 02:35:43 2011 +0400
| 
|     Restored regularization at LLE
| 
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
|  
* commit f694cb6e16fab938bbcc0cfa5c52f9e7335005ab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 19 22:20:09 2011 +0200
| 
|     Replace void foo(void) -> void foo() and finish template .h -> .cpp
|     transition in shogun/features/*
| 
| M	src/shogun/base/DynArray.h
| M	src/shogun/base/Parameter.cpp
| M	src/shogun/base/Parameter.h
| M	src/shogun/classifier/svm/GMNPLib.cpp
| M	src/shogun/classifier/svm/GMNPLib.h
| M	src/shogun/classifier/svm/GMNPSVM.cpp
| M	src/shogun/classifier/svm/GMNPSVM.h
| M	src/shogun/classifier/svm/GNPPLib.cpp
| M	src/shogun/classifier/svm/GNPPLib.h
| M	src/shogun/classifier/svm/LibLinear.cpp
| M	src/shogun/classifier/svm/LibLinear.h
| M	src/shogun/classifier/svm/MultiClassSVM.cpp
| M	src/shogun/classifier/svm/QPBSVMLib.cpp
| M	src/shogun/classifier/svm/QPBSVMLib.h
| M	src/shogun/classifier/svm/SVMLight.cpp
| M	src/shogun/classifier/svm/SVMOcas.h
| M	src/shogun/classifier/svm/SVM_linear.cpp
| M	src/shogun/classifier/svm/SVM_linear.h
| M	src/shogun/classifier/svm/ScatterSVM.cpp
| M	src/shogun/classifier/svm/ScatterSVM.h
| M	src/shogun/classifier/svm/Tron.h
| M	src/shogun/classifier/svm/WDSVMOcas.cpp
| M	src/shogun/classifier/svm/WDSVMOcas.h
| M	src/shogun/classifier/svm/gpdt.cpp
| M	src/shogun/classifier/svm/gpdtsolve.cpp
| M	src/shogun/classifier/svm/gpdtsolve.h
| M	src/shogun/distance/KernelDistance.h
| M	src/shogun/distance/RealDistance.h
| M	src/shogun/distance/SimpleDistance.h
| M	src/shogun/distance/SparseDistance.h
| M	src/shogun/distance/StringDistance.h
| M	src/shogun/distributions/GHMM.h
| M	src/shogun/distributions/HMM.cpp
| M	src/shogun/distributions/HMM.h
| M	src/shogun/features/Alphabet.cpp
| M	src/shogun/features/Alphabet.h
| M	src/shogun/features/DotFeatures.h
| M	src/shogun/features/ExplicitSpecFeatures.cpp
| M	src/shogun/features/Features.cpp
| M	src/shogun/features/Features.h
| M	src/shogun/features/HashedWDFeatures.cpp
| M	src/shogun/features/HashedWDFeatures.h
| M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| M	src/shogun/features/HashedWDFeaturesTransposed.h
| M	src/shogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/shogun/features/ImplicitWeightedSpecFeatures.h
| M	src/shogun/features/LBPPyrDotFeatures.cpp
| M	src/shogun/features/RealFileFeatures.cpp
| M	src/shogun/features/SNPFeatures.cpp
| M	src/shogun/features/SparsePolyFeatures.cpp
| A	src/shogun/features/StreamingSimpleFeatures.cpp
| M	src/shogun/features/StreamingSimpleFeatures.h
| A	src/shogun/features/StreamingSparseFeatures.cpp
| M	src/shogun/features/StreamingSparseFeatures.h
| A	src/shogun/features/StreamingStringFeatures.cpp
| M	src/shogun/features/StreamingStringFeatures.h
| M	src/shogun/features/StringFeatures.cpp
| M	src/shogun/features/StringFeatures.h
| A	src/shogun/features/StringFileFeatures.cpp
| M	src/shogun/features/StringFileFeatures.h
| M	src/shogun/features/WDFeatures.cpp
| M	src/shogun/io/AsciiFile.cpp
| M	src/shogun/io/BinaryFile.cpp
| M	src/shogun/io/BinaryFile.h
| M	src/shogun/io/HDF5File.cpp
| M	src/shogun/io/HDF5File.h
| M	src/shogun/io/MemoryMappedFile.h
| M	src/shogun/io/SerializableAsciiFile.cpp
| M	src/shogun/io/SerializableAsciiFile.h
| M	src/shogun/io/SerializableAsciiReader00.cpp
| M	src/shogun/io/SerializableAsciiReader00.h
| M	src/shogun/io/SerializableFile.cpp
| M	src/shogun/io/SerializableFile.h
| M	src/shogun/io/SerializableHdf5File.cpp
| M	src/shogun/io/SerializableHdf5File.h
| M	src/shogun/io/SerializableHdf5Reader00.cpp
| M	src/shogun/io/SerializableHdf5Reader00.h
| M	src/shogun/io/SerializableJsonFile.cpp
| M	src/shogun/io/SerializableJsonFile.h
| M	src/shogun/io/SerializableJsonReader00.cpp
| M	src/shogun/io/SerializableJsonReader00.h
| M	src/shogun/io/SerializableXmlFile.cpp
| M	src/shogun/io/SerializableXmlFile.h
| M	src/shogun/io/SerializableXmlReader00.cpp
| M	src/shogun/io/SerializableXmlReader00.h
| M	src/shogun/io/SimpleFile.h
| M	src/shogun/kernel/AUCKernel.cpp
| M	src/shogun/kernel/AUCKernel.h
| M	src/shogun/kernel/Chi2Kernel.cpp
| M	src/shogun/kernel/Chi2Kernel.h
| M	src/shogun/kernel/CircularKernel.cpp
| M	src/shogun/kernel/CircularKernel.h
| M	src/shogun/kernel/ConstKernel.cpp
| M	src/shogun/kernel/CustomKernel.cpp
| M	src/shogun/kernel/CustomKernel.h
| M	src/shogun/kernel/DiceKernelNormalizer.h
| M	src/shogun/kernel/DistanceKernel.cpp
| M	src/shogun/kernel/DistanceKernel.h
| M	src/shogun/kernel/DistantSegmentsKernel.h
| M	src/shogun/kernel/DotKernel.h
| M	src/shogun/kernel/ExponentialKernel.cpp
| M	src/shogun/kernel/ExponentialKernel.h
| M	src/shogun/kernel/FixedDegreeStringKernel.cpp
| M	src/shogun/kernel/FixedDegreeStringKernel.h
| M	src/shogun/kernel/GaussianKernel.cpp
| M	src/shogun/kernel/GaussianKernel.h
| M	src/shogun/kernel/GaussianMatchStringKernel.cpp
| M	src/shogun/kernel/GaussianMatchStringKernel.h
| M	src/shogun/kernel/GaussianShiftKernel.cpp
| M	src/shogun/kernel/GaussianShortRealKernel.cpp
| M	src/shogun/kernel/GaussianShortRealKernel.h
| M	src/shogun/kernel/HistogramIntersectionKernel.cpp
| M	src/shogun/kernel/HistogramIntersectionKernel.h
| M	src/shogun/kernel/HistogramWordStringKernel.cpp
| M	src/shogun/kernel/InverseMultiQuadricKernel.cpp
| M	src/shogun/kernel/InverseMultiQuadricKernel.h
| M	src/shogun/kernel/LocalAlignmentStringKernel.cpp
| M	src/shogun/kernel/OligoStringKernel.cpp
| M	src/shogun/kernel/PolyKernel.cpp
| M	src/shogun/kernel/PolyMatchStringKernel.cpp
| M	src/shogun/kernel/PolyMatchWordStringKernel.cpp
| M	src/shogun/kernel/PyramidChi2.cpp
| M	src/shogun/kernel/PyramidChi2.h
| M	src/shogun/kernel/RegulatoryModulesStringKernel.cpp
| M	src/shogun/kernel/RegulatoryModulesStringKernel.h
| M	src/shogun/kernel/SNPStringKernel.cpp
| M	src/shogun/kernel/SNPStringKernel.h
| M	src/shogun/kernel/SparseKernel.h
| M	src/shogun/kernel/SpectrumMismatchRBFKernel.cpp
| M	src/shogun/kernel/SpectrumMismatchRBFKernel.h
| M	src/shogun/kernel/SpectrumRBFKernel.cpp
| M	src/shogun/kernel/SpectrumRBFKernel.h
| M	src/shogun/kernel/SphericalKernel.cpp
| M	src/shogun/kernel/StringKernel.h
| M	src/shogun/kernel/TStudentKernel.h
| M	src/shogun/kernel/TanimotoKernelNormalizer.h
| M	src/shogun/kernel/TensorProductPairKernel.cpp
| M	src/shogun/kernel/TensorProductPairKernel.h
| M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/shogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/shogun/lib/BitString.h
| M	src/shogun/lib/Cache.h
| M	src/shogun/lib/Compressor.cpp
| M	src/shogun/lib/Compressor.h
| M	src/shogun/lib/DataType.cpp
| M	src/shogun/lib/DataType.h
| M	src/shogun/lib/DynamicObjectArray.h
| M	src/shogun/lib/GCArray.h
| M	src/shogun/lib/List.h
| M	src/shogun/machine/DistanceMachine.h
| M	src/shogun/machine/KernelMachine.h
| M	src/shogun/preprocessor/DecompressString.h
|    
*   commit 8adcc9d17b6ec5c5230a916b9ad279a7a6c91b0e
|\  Merge: 1f6bf22 486a452
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Sep 19 10:58:12 2011 -0700
| | 
| |     Merge pull request #322 from shelhamer/install_docs
| |     
| |     Updated install docs w/ current interfaces names, homebrew suggestion
| |   
| * commit 486a452317dd864680c02a35c2ee721e11d0bf9d
|/  Author: Evan Shelhamer <shelhamer@imaginarynumber.net>
|   Date:   Mon Sep 19 12:03:07 2011 -0400
|   
|       Updated install docs w/ current interfaces names, homebrew suggestion for OSX
|   
|   M	doc/pages/Installation.mainpage
|   M	src/INSTALL
|  
* commit 1f6bf22fdb81bb360e7221bcf61fc2ed1caadf8c
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Sep 18 14:01:07 2011 +0400
| 
|     Added doc for detect_dim routine
| 
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
|  
* commit 828a0f4dfb6ebe4b07b4b9e1a733e49aa04df155
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Sep 18 13:55:06 2011 +0400
| 
|     Various structure improvements for DR preprocessors
| 
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/Isomap.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| M	src/shogun/preprocessor/MultidimensionalScaling.h
|  
* commit 4e58cf6bec09eb12012f8f77ac6b76441ec8c734
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 16 23:51:13 2011 +0200
| 
|     move all implementations from .h to .cpp for sparse featrures
| 
| A	src/shogun/features/SparseFeatures.cpp
| M	src/shogun/features/SparseFeatures.h
|  
* commit 014a320e061acd150c1fe6b2fb781f11ee826c6f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 16 22:51:02 2011 +0200
| 
|     move templated function implementations from .h to .cpp
| 
| A	src/shogun/features/StringFeatures.cpp
| M	src/shogun/features/StringFeatures.h
|  
* commit 9733645d0bd0deece1111ed8d6a3cf8fb38c784a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 16 22:01:00 2011 +0200
| 
|     remove a few obsolete includes and reformat code
| 
| M	src/shogun/features/SimpleFeatures.cpp
| M	src/shogun/features/SimpleFeatures.h
|  
* commit 84db31742e0920d6018683415ce0d13e6c6e4f6c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 16 17:09:14 2011 +0200
| 
|     move templated code from SimpleFeatures.h to SimpleFeatures.cpp
| 
| M	src/shogun/features/SimpleFeatures.cpp
| M	src/shogun/features/SimpleFeatures.h
|  
* commit 4a8d99d97cacbdf0d522d8d284e28dfe46f00014
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 15 23:29:36 2011 +0200
| 
|     Put implementations of templated functions into .cpp files
|     
|     This is possible when strictly following
|     http://www.parashift.com/c++-faq-lite/templates.html#faq-35.15
|     
|     i.e. we must know beforehand which types we want to support and specify
|     them like
|     
|     template class Foo<int32_t>;
|     
|     at the end of the .cpp file. This all holds true for feature classes
|     and should enable us to move all but definitions from .h files to
|     .cpp's.
| 
| A	src/shogun/features/SimpleFeatures.cpp
| M	src/shogun/features/SimpleFeatures.h
|  
* commit a49b0f6dd28b1a0738f0922565f386c195b3d494
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 15 23:08:33 2011 +0200
| 
|     remove unnecessary includes from .h files
| 
| M	src/shogun/classifier/svm/OnlineLibLinear.cpp
| M	src/shogun/distance/CustomDistance.cpp
| M	src/shogun/features/Alphabet.h
| M	src/shogun/features/AttributeFeatures.cpp
| M	src/shogun/features/AttributeFeatures.h
| M	src/shogun/features/CombinedDotFeatures.h
| M	src/shogun/features/DotFeatures.cpp
| M	src/shogun/features/DotFeatures.h
| M	src/shogun/features/DummyFeatures.cpp
| M	src/shogun/features/DummyFeatures.h
| M	src/shogun/features/ExplicitSpecFeatures.cpp
| M	src/shogun/features/ExplicitSpecFeatures.h
| M	src/shogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/shogun/features/ImplicitWeightedSpecFeatures.h
| M	src/shogun/features/LBPPyrDotFeatures.h
| M	src/shogun/features/Labels.h
| M	src/shogun/features/PolyFeatures.h
| M	src/shogun/features/RealFileFeatures.cpp
| M	src/shogun/features/RealFileFeatures.h
|  
* commit 4f9566fdc5a099604f1ddbf2e3702368c4f81b42
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 15 22:36:54 2011 +0200
| 
|     start to simplify typemaps - extracting all code into functions
| 
| M	src/interfaces/python_modular/swig_typemaps.i
|  
* commit c834d2bda34ad2a12662b392e1986ff4c767a3e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 15 22:35:03 2011 +0200
| 
|     remove remaining inline functions in features/
| 
| A	src/shogun/features/StreamingFeatures.cpp
| M	src/shogun/features/StreamingFeatures.h
| M	src/shogun/features/StreamingVwFeatures.cpp
| M	src/shogun/features/StreamingVwFeatures.h
|  
* commit 8b4ce6cd5e6d0d78da73892e1f8502853a05823c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 15 22:13:15 2011 +0200
| 
|     remove most inline functions in features
|     
|     - exceptions are some single line functions
|     - templated classes
| 
| M	src/shogun/features/Alphabet.cpp
| M	src/shogun/features/Alphabet.h
| M	src/shogun/features/AttributeFeatures.cpp
| M	src/shogun/features/AttributeFeatures.h
| M	src/shogun/features/CombinedDotFeatures.cpp
| M	src/shogun/features/CombinedDotFeatures.h
| M	src/shogun/features/CombinedFeatures.cpp
| M	src/shogun/features/CombinedFeatures.h
| M	src/shogun/features/DotFeatures.cpp
| M	src/shogun/features/DotFeatures.h
| A	src/shogun/features/DummyFeatures.cpp
| M	src/shogun/features/DummyFeatures.h
| M	src/shogun/features/ExplicitSpecFeatures.h
| M	src/shogun/features/HashedWDFeatures.cpp
| M	src/shogun/features/HashedWDFeatures.h
| M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| M	src/shogun/features/HashedWDFeaturesTransposed.h
| M	src/shogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/shogun/features/ImplicitWeightedSpecFeatures.h
| M	src/shogun/features/LBPPyrDotFeatures.cpp
| M	src/shogun/features/LBPPyrDotFeatures.h
| M	src/shogun/features/Labels.cpp
| M	src/shogun/features/Labels.h
| M	src/shogun/features/PolyFeatures.cpp
| M	src/shogun/features/PolyFeatures.h
| M	src/shogun/features/SNPFeatures.cpp
| M	src/shogun/features/SNPFeatures.h
| M	src/shogun/features/SparsePolyFeatures.cpp
| M	src/shogun/features/SparsePolyFeatures.h
| A	src/shogun/features/StreamingDotFeatures.cpp
| M	src/shogun/features/StreamingDotFeatures.h
| M	src/shogun/features/WDFeatures.cpp
| M	src/shogun/features/WDFeatures.h
|  
* commit 5fee0e674fb8542918dc330a60556244c58e1a00
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 15 20:04:29 2011 +0200
| 
|     mention that one should avoid inline functions
| 
| M	src/README.developer
|  
* commit 9c69c844443075c89ee6406f1d5de4088dc81e43
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 15 20:03:50 2011 +0200
| 
|     fix comment type to get it integrated in doxygen
| 
| M	src/shogun/preprocessor/Preprocessor.h
|  
* commit 73e9943ee34e99bf2f2f3d932bf8d62a488eddf4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Sep 11 20:24:31 2011 +0200
| 
|     use axis tight to improve figure
| 
| M	examples/undocumented/python_modular/graphical/svm.py
|  
* commit b1edffbca7d091e3d51d9eaa6a11d902c40fdab5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Sep 11 20:23:53 2011 +0200
| 
|     use CALLOC instead of MALLOC
| 
| M	src/shogun/kernel/LocalAlignmentStringKernel.cpp
|  
* commit 5ef91ed1c9d5416877ac01feaf8099735c1f22e4
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Sep 11 01:28:31 2011 +0400
| 
|     Updated KLLE
| 
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
|  
* commit 7e0438e57ff002322a0514d70b5644246b00cbaa
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Sep 11 01:28:19 2011 +0400
| 
|     Removed unnecessary includes
| 
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
|  
* commit 613d9dc63a7786867a25eb940dec2b2b144f6f0a
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Sep 11 01:05:31 2011 +0400
| 
|     Improved performance of locally linear embedding
| 
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.h
|  
* commit f8944e0ff7046e284859c0ae7c3cab605aa76a1c
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Sep 11 01:03:54 2011 +0400
| 
|     Beautified dimreduction examples
| 
| M	examples/undocumented/python_modular/graphical/hemisphere.py
| M	examples/undocumented/python_modular/graphical/swissroll.py
|  
* commit f34ce2ca16d14e5051cac4fbe88f267f74be7dfd
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Sep 10 17:31:31 2011 +0400
| 
|     Fixed typo in configure
| 
| M	src/configure
|  
* commit 41f17eae94da51f8013d4773ab86d41be225b84c
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Sep 10 13:18:33 2011 +0400
| 
|     Added SuperLU detection
| 
| M	src/configure
|  
* commit 4c09886bdb5dff7264b99a0de460c2a9d22dc353
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Sep 5 23:45:08 2011 +0400
| 
|     Doc improvements for evaluators
| 
| M	src/shogun/evaluation/BinaryClassEvaluation.h
| M	src/shogun/evaluation/Evaluation.h
| M	src/shogun/evaluation/MeanSquaredError.h
| M	src/shogun/evaluation/MulticlassAccuracy.h
| M	src/shogun/evaluation/PRCEvaluation.h
| M	src/shogun/evaluation/ROCEvaluation.h
|  
* commit 7f707b1965c042d14fb597e16e728ddb7420e3ab
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Sep 5 01:04:47 2011 +0400
| 
|     Cleaned base Preprocessor class
| 
| D	src/shogun/preprocessor/Preprocessor.cpp
| M	src/shogun/preprocessor/Preprocessor.h
|  
* commit d744130fa8fec2f5c72cbd410b06d7dbd2b68e39
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Sep 4 14:36:57 2011 +0400
| 
|     Resolved HistogramWordStringKernel testsuite issue
| 
| M	src/shogun/kernel/HistogramWordStringKernel.cpp
|  
* commit 4c6174cc68085556a1b6178fecdc2d593f573746
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Sep 4 00:13:11 2011 +0400
| 
|     Changed data symlink to toy data
| 
| M	examples/documented/data
|  
* commit fbb28f974180bf62e3b4524fa2acf575d216970b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 2 20:14:26 2011 +0200
| 
|     removal of useless ruby examples
| 
| D	examples/undocumented/ruby_modular/MatrixTest.rb
| D	examples/undocumented/ruby_modular/VectorTest.rb
| D	examples/undocumented/ruby_modular/minimal_test.rb
| D	examples/undocumented/ruby_modular/shogun_helpers.rb
|  
* commit de95a2fe4862e488f697c30a3bf3862ede59a025
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 2 20:13:46 2011 +0200
| 
|     minor ruby example polishing
| 
| M	examples/undocumented/ruby_modular/classifier_custom_kernel_modular.rb
| M	examples/undocumented/ruby_modular/classifier_libsvm_minimal_modular.rb
| M	examples/undocumented/ruby_modular/clustering_hierarchical_modular.rb
| M	examples/undocumented/ruby_modular/distance_braycurtis_modular.rb
| M	examples/undocumented/ruby_modular/distance_canberra_modular.rb
| M	examples/undocumented/ruby_modular/distribution_histogram_modular.rb
| M	examples/undocumented/ruby_modular/features_io_modular.rb
| M	examples/undocumented/ruby_modular/features_read_svmlight_format_modular.rb
| M	examples/undocumented/ruby_modular/features_string_char_modular.rb
| M	examples/undocumented/ruby_modular/kernel_anova_modular.rb
| M	examples/undocumented/ruby_modular/kernel_auc_modular.rb
| M	examples/undocumented/ruby_modular/kernel_cauchy_modular.rb
| M	examples/undocumented/ruby_modular/kernel_chi2_modular.rb
| M	examples/undocumented/ruby_modular/kernel_circular_modular.rb
| M	examples/undocumented/ruby_modular/kernel_combined_custom_poly_modular.rb
| M	examples/undocumented/ruby_modular/kernel_gaussian_modular.rb
| M	examples/undocumented/ruby_modular/load.rb
| M	examples/undocumented/ruby_modular/modelselection_parameter_tree_modular.rb
| M	examples/undocumented/ruby_modular/preprocessor_hessianlocallylinearembedding_modular.rb
| M	examples/undocumented/ruby_modular/regression_krr_modular.rb
| M	examples/undocumented/ruby_modular/regression_libsvr_modular.rb
|    
*   commit 93413df7e44cb66c32cb48de8a3c5a70d7ab9b75
|\  Merge: 6bee4f4 cbe9c23
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Sep 2 10:47:45 2011 -0700
| | 
| |     Merge pull request #321 from serialhex/master
| |     
| |     merging final batch of ruby examples
| |   
| * commit cbe9c236910345451ca7269e95c35d64ec40e25e
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Wed Aug 31 08:10:40 2011 -0400
| | 
| |     got the rest of the examples working, modshogun.rb moved here and renamed to shogun_helpers.rb, just like the rest of the $LANG examples.  only one file giving me hell: features_io_modular.rb though it should work i get a "uninitialized constant Modshogun::HDF5File (NameError)" which means i didn't install something...
| | 
| | M	examples/undocumented/ruby_modular/MatrixTest.rb
| | M	examples/undocumented/ruby_modular/VectorTest.rb
| | A	examples/undocumented/ruby_modular/classifier_custom_kernel_modular.rb
| | M	examples/undocumented/ruby_modular/classifier_libsvm_minimal_modular.rb
| | M	examples/undocumented/ruby_modular/clustering_hierarchical_modular.rb
| | M	examples/undocumented/ruby_modular/distance_braycurtis_modular.rb
| | M	examples/undocumented/ruby_modular/distance_canberra_modular.rb
| | M	examples/undocumented/ruby_modular/distribution_histogram_modular.rb
| | M	examples/undocumented/ruby_modular/features_io_modular.rb
| | M	examples/undocumented/ruby_modular/features_read_svmlight_format_modular.rb
| | M	examples/undocumented/ruby_modular/features_string_char_modular.rb
| | M	examples/undocumented/ruby_modular/kernel_anova_modular.rb
| | M	examples/undocumented/ruby_modular/kernel_auc_modular.rb
| | M	examples/undocumented/ruby_modular/kernel_cauchy_modular.rb
| | M	examples/undocumented/ruby_modular/kernel_chi2_modular.rb
| | M	examples/undocumented/ruby_modular/kernel_circular_modular.rb
| | M	examples/undocumented/ruby_modular/kernel_combined_custom_poly_modular.rb
| | M	examples/undocumented/ruby_modular/kernel_gaussian_modular.rb
| | M	examples/undocumented/ruby_modular/minimal_test.rb
| | M	examples/undocumented/ruby_modular/modelselection_parameter_tree_modular.rb
| | M	examples/undocumented/ruby_modular/preprocessor_hessianlocallylinearembedding_modular.rb
| | M	examples/undocumented/ruby_modular/regression_krr_modular.rb
| | M	examples/undocumented/ruby_modular/regression_libsvr_modular.rb
| | A	examples/undocumented/ruby_modular/shogun_helpers.rb
| |   
* | commit 6bee4f4ba32cd365a0135870796bbf9816f67828
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Sep 2 08:59:11 2011 +0200
| | 
| |     add instructions on how to get the data
| | 
| | A	src/README.data
| |   
* | commit 74f4793e4f4c22b91a16d9dd87a33e7fa107aa88
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Sep 1 20:18:12 2011 +0200
| | 
| |     improve release script
| | 
| | M	Makefile
| |   
* | commit 0d8f97ac684aa03837d894b0b3ea535b53158f12
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Sep 1 08:56:08 2011 +0200
| | 
| |     fix Makefile
| | 
| | M	Makefile
| |   
* | commit 246e694f5128d50edae0100e4535477256c3c363
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Sep 1 01:02:35 2011 +0200
| | 
| |     Preparing for new Release shogun_1.0.0
| | 
| | M	src/ChangeLog
| |   
* | commit 96711a6f878696551d5de07f4e7e94fb5a0bfd58
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Sep 1 01:01:46 2011 +0200
| | 
| |     fixes to tag release target
| | 
| | M	Makefile
| |   
* | commit d4ef7b537a28c11eb48ff56636d1d421c98ff47b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Sep 1 00:58:12 2011 +0200
| | 
| |     updated changelog
| | 
| | M	src/ChangeLog
| |   
* | commit 13d738f9453e301676c1ad5a82b0747ae288a0db
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Sep 1 02:14:04 2011 +0400
| | 
| |     Updated data
| | 
| | M	data
| |   
* | commit 3210c3f1ba04e3d295b6ffbad3c76f0023b29d45
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Sep 1 02:12:00 2011 +0400
| | 
| |     Updated data
| | 
| | M	data
| |   
* | commit de6f67984c2e776f97df049f5f8f3dbc9e0168f2
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Sep 1 02:03:20 2011 +0400
| | 
| |     Removed junk from clustering tester
| | 
| | M	testsuite/python_modular/clustering.py
| |   
* | commit 3d25031e1606f86d353de72e3c3b43b083af7ab2
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Sep 1 02:02:25 2011 +0400
| | 
| |     Fixes for LogPlusOne preprocessor
| | 
| | M	src/shogun/preprocessor/LogPlusOne.cpp
| |   
* | commit 99966f1ce50b6417ff2a65d6519a14f8ad62f9c9
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 31 23:58:29 2011 +0200
| | 
| |     improve release script again
| | 
| | M	Makefile
| |   
* | commit 67b6b842a12d84a7e7494dc5a36af12292aa1669
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Sep 1 01:38:07 2011 +0400
| | 
| |     Updated data
| | 
| | M	data
| |   
* | commit f6512c764b6933bff9bd30a8109a26e72b256249
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Sep 1 01:37:52 2011 +0400
| | 
| |     Fixes for clustering tester
| | 
| | M	testsuite/python_modular/clustering.py
| |   
* | commit 4240e558dd8303e97984aa073721daee7ca59694
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 31 23:23:38 2011 +0200
| | 
| |     improved release script for work with git
| | 
| | M	Makefile
| |   
* | commit ea275ed63d9b654b8a5c709a1ef01a0955d428a5
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 31 22:32:00 2011 +0200
| | 
| |     update data
| | 
| | M	data
| |   
* | commit 7f13b81348bdee075f0f5b6c7685541790f1b71c
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Sep 1 00:07:57 2011 +0400
| | 
| |     Updated data
| | 
| | M	data
| |   
* | commit 16227f53436fec3868a4a52aa15207c6cdf7b7a3
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Sep 1 00:06:32 2011 +0400
| | 
| |     Fixed preprocessor testsuite
| | 
| | M	testsuite/python_modular/preprocessor.py
| |   
* | commit a8f57f03121e621b33c45cb08337f49a3e07fcf0
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 31 21:27:24 2011 +0200
| | 
| |     exclude tests directory form old-tests
| | 
| | M	testsuite/octave_modular/test_all.sh
| | M	testsuite/python_static/test_all.sh
| | M	testsuite/r_modular/test_all.sh
| | M	testsuite/r_static/test_all.sh
| |   
* | commit b5f27b9ea0e4338102c8e9264457dcbfb25b75fb
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Aug 31 21:53:29 2011 +0400
| | 
| |     Transitioned copy feature matrix routine to SGMatrix
| | 
| | M	src/shogun/clustering/KMeans.cpp
| | M	src/shogun/features/SimpleFeatures.h
| |   
* | commit 419a67bc3898d0380e9ddc7267907b6e6a4dae27
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 31 19:19:36 2011 +0200
| | 
| |     fix a few regressions
| | 
| | M	testsuite/python_modular/kernel.py
| | M	testsuite/python_modular/test_all.sh
| | M	testsuite/python_modular/test_svm_kernel_multiple.py
| |   
* | commit fc4625c8c4bbc5439a2db6819f4de27b877cd7a1
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 31 18:45:45 2011 +0200
| | 
| |     further SGVectorization of dynprog
| | 
| | M	src/shogun/structure/DynProg.cpp
| | M	src/shogun/structure/DynProg.h
| | M	src/shogun/ui/SGInterface.cpp
| |   
* | commit 6823fdbe61cfcd6efc30f1351bcc114a7441bf6e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 31 18:20:24 2011 +0200
| | 
| |     SGVectorize dynprog function
| | 
| | M	src/Makefile.template
| | M	src/shogun/structure/DynProg.cpp
| | M	src/shogun/structure/DynProg.h
| | M	src/shogun/ui/SGInterface.cpp
| |   
* | commit 8e2b540a63e24515f3e0440976b813cda20c55eb
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 31 18:13:35 2011 +0200
| | 
| |     ignore tests
| | 
| | M	testsuite/matlab_and_octave/test_all.sh
| |   
* | commit 2e4b2b5fec916629e64651821ac59dbcc25fae5f
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Aug 31 19:54:28 2011 +0400
| | 
| |     Fixed esvm at easysvm
| | 
| | M	applications/easysvm/esvm/experiment.py
| | M	applications/easysvm/esvm/utils.py
| |   
* | commit be81d77f3d965585f5bccefcdb2c79028306a0b9
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Aug 31 18:50:57 2011 +0400
| | 
| |     Updated interfaces in readme
| | 
| | M	src/README
| |   
* | commit 49d04a56c68c4e11cfed9e1187154b03392b03ad
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Wed Aug 31 14:20:01 2011 +0200
|   
|       rename r -> r_static etc
|   
|   M	Makefile
|   M	src/Makefile.template
|   D	testsuite/matlab
|   A	testsuite/matlab_static
|   D	testsuite/octave
|   A	testsuite/octave_static
|   D	testsuite/python/classifier.py
|   D	testsuite/python/clustering.py
|   D	testsuite/python/distance.py
|   D	testsuite/python/distribution.py
|   D	testsuite/python/kernel.py
|   D	testsuite/python/preproc.py
|   D	testsuite/python/regression.py
|   D	testsuite/python/test_all.sh
|   D	testsuite/python/test_one.py
|   D	testsuite/python/test_svm_kernel_multiple.py
|   D	testsuite/python/util.py
|   A	testsuite/python_static/classifier.py
|   A	testsuite/python_static/clustering.py
|   A	testsuite/python_static/distance.py
|   A	testsuite/python_static/distribution.py
|   A	testsuite/python_static/kernel.py
|   A	testsuite/python_static/preproc.py
|   A	testsuite/python_static/regression.py
|   A	testsuite/python_static/test_all.sh
|   A	testsuite/python_static/test_one.py
|   A	testsuite/python_static/test_svm_kernel_multiple.py
|   A	testsuite/python_static/util.py
|   D	testsuite/r/classifier.R
|   D	testsuite/r/clustering.R
|   D	testsuite/r/distance.R
|   D	testsuite/r/distribution.R
|   D	testsuite/r/kernel.R
|   D	testsuite/r/preproc.R
|   D	testsuite/r/regression.R
|   D	testsuite/r/test_all.sh
|   D	testsuite/r/test_one.R
|   D	testsuite/r/test_one.sh
|   D	testsuite/r/util/check_accuracy.R
|   D	testsuite/r/util/convert_features_and_add_preproc.R
|   D	testsuite/r/util/fix_classifier_name_inconsistency.R
|   D	testsuite/r/util/fix_clustering_name_inconsistency.R
|   D	testsuite/r/util/fix_distance_name_inconsistency.R
|   D	testsuite/r/util/fix_kernel_name_inconsistency.R
|   D	testsuite/r/util/fix_normalizer_name_inconsistency.R
|   D	testsuite/r/util/fix_preproc_name_inconsistency.R
|   D	testsuite/r/util/fix_regression_name_inconsistency.R
|   D	testsuite/r/util/read_mfile.R
|   D	testsuite/r/util/set_distance.R
|   D	testsuite/r/util/set_features.R
|   D	testsuite/r/util/set_kernel.R
|   D	testsuite/r/util/tobool.R
|   A	testsuite/r_static/classifier.R
|   A	testsuite/r_static/clustering.R
|   A	testsuite/r_static/distance.R
|   A	testsuite/r_static/distribution.R
|   A	testsuite/r_static/kernel.R
|   A	testsuite/r_static/preproc.R
|   A	testsuite/r_static/regression.R
|   A	testsuite/r_static/test_all.sh
|   A	testsuite/r_static/test_one.R
|   A	testsuite/r_static/test_one.sh
|   A	testsuite/r_static/util/check_accuracy.R
|   A	testsuite/r_static/util/convert_features_and_add_preproc.R
|   A	testsuite/r_static/util/fix_classifier_name_inconsistency.R
|   A	testsuite/r_static/util/fix_clustering_name_inconsistency.R
|   A	testsuite/r_static/util/fix_distance_name_inconsistency.R
|   A	testsuite/r_static/util/fix_kernel_name_inconsistency.R
|   A	testsuite/r_static/util/fix_normalizer_name_inconsistency.R
|   A	testsuite/r_static/util/fix_preproc_name_inconsistency.R
|   A	testsuite/r_static/util/fix_regression_name_inconsistency.R
|   A	testsuite/r_static/util/read_mfile.R
|   A	testsuite/r_static/util/set_distance.R
|   A	testsuite/r_static/util/set_features.R
|   A	testsuite/r_static/util/set_kernel.R
|   A	testsuite/r_static/util/tobool.R
|  
* commit ceee77a89029284bd9ca83f121c004ef23da3d25
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Aug 31 14:34:11 2011 +0400
| 
|     Doc improvements
| 
| M	src/shogun/base/Parameter.h
| M	src/shogun/base/class_list.cpp.templ
| M	src/shogun/classifier/svm/CPLEXSVM.h
| M	src/shogun/classifier/svm/LaRank.h
| M	src/shogun/distributions/PositionalPWM.h
| M	src/shogun/features/CombinedDotFeatures.h
| M	src/shogun/features/ExplicitSpecFeatures.h
| M	src/shogun/features/HashedWDFeatures.h
| M	src/shogun/features/HashedWDFeaturesTransposed.h
| M	src/shogun/features/ImplicitWeightedSpecFeatures.h
| M	src/shogun/features/PolyFeatures.h
| M	src/shogun/features/SimpleFeatures.h
| M	src/shogun/features/SparseFeatures.h
| M	src/shogun/features/SparsePolyFeatures.h
| M	src/shogun/features/WDFeatures.h
| M	src/shogun/io/SerializableAsciiFile.h
| M	src/shogun/io/SerializableAsciiReader00.h
| M	src/shogun/io/SerializableFile.h
| M	src/shogun/kernel/ANOVAKernel.h
| M	src/shogun/kernel/BesselKernel.h
| M	src/shogun/kernel/Kernel.h
| M	src/shogun/kernel/ScatterKernelNormalizer.h
| M	src/shogun/kernel/SpectrumMismatchRBFKernel.h
| M	src/shogun/kernel/SpectrumRBFKernel.h
| M	src/shogun/kernel/WaveletKernel.h
| M	src/shogun/kernel/WeightedDegreeRBFKernel.h
| M	src/shogun/lib/Compressor.h
| M	src/shogun/lib/DataType.h
| M	src/shogun/lib/HashSet.h
| M	src/shogun/structure/DynProg.h
| M	src/shogun/ui/GUIClassifier.h
| M	src/shogun/ui/GUIDistance.h
| M	src/shogun/ui/GUIFeatures.h
| M	src/shogun/ui/GUIHMM.h
| M	src/shogun/ui/GUIKernel.h
| M	src/shogun/ui/GUILabels.h
| M	src/shogun/ui/GUIMath.h
| M	src/shogun/ui/GUIPluginEstimate.h
| M	src/shogun/ui/GUIPreprocessor.h
| M	src/shogun/ui/GUIStructure.h
| M	src/shogun/ui/GUITime.h
| M	src/shogun/ui/SGInterface.h
| M	src/shogun/ui/SyntaxHighLight.h
|  
* commit b23e6ba0638bea171c9bee88042ec48ef20be784
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 31 11:30:38 2011 +0200
| 
|     require new test data
| 
| M	data
|  
* commit 52fb28d425f5ae6ebb4d4357a2c69dea945b5ccb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 31 11:24:58 2011 +0200
| 
|     fixed a number of .rb scripts and removed broken non-trivial to fix ones
| 
| M	data
| D	examples/undocumented/ruby_modular/classifier_custom_kernel_modular.rb
| M	examples/undocumented/ruby_modular/classifier_libsvm_minimal_modular.rb
| M	examples/undocumented/ruby_modular/clustering_hierarchical_modular.rb
| M	examples/undocumented/ruby_modular/distance_braycurtis_modular.rb
| M	examples/undocumented/ruby_modular/distance_canberra_modular.rb
| M	examples/undocumented/ruby_modular/distribution_histogram_modular.rb
| M	examples/undocumented/ruby_modular/kernel_anova_modular.rb
| M	examples/undocumented/ruby_modular/kernel_cauchy_modular.rb
| M	examples/undocumented/ruby_modular/kernel_chi2_modular.rb
| M	examples/undocumented/ruby_modular/kernel_circular_modular.rb
| M	examples/undocumented/ruby_modular/kernel_combined_custom_poly_modular.rb
| M	examples/undocumented/ruby_modular/load.rb
| M	examples/undocumented/ruby_modular/preprocessor_hessianlocallylinearembedding_modular.rb
| M	examples/undocumented/ruby_modular/regression_krr_modular.rb
| M	examples/undocumented/ruby_modular/regression_libsvr_modular.rb
| D	examples/undocumented/ruby_modular/shogun_helpers.rb
| D	src/interfaces/ruby_modular/modshogun.rb
|  
* commit e3c14a41d3cbc180b55c368e89539376ed1e291b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 31 10:49:17 2011 +0200
| 
|     require new test data
| 
| M	data
|  
* commit 3deadd256739833965ba4eb1bed16ad4307521d2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 31 10:46:19 2011 +0200
| 
|     all generated tests work upon generator.py/tester.py now
| 
| M	examples/undocumented/python_modular/distribution_ppwm_modular.py
| M	examples/undocumented/python_modular/streaming_vw_createcache_modular.py
| M	examples/undocumented/python_modular/streaming_vw_modular.py
| M	src/shogun/kernel/SplineKernel.cpp
| M	src/shogun/kernel/SplineKernel.h
|  
* commit b17aeae601a26bcdd5f0461f07a688b24a2aa396
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 31 10:06:51 2011 +0200
| 
|     fix remaining examples
| 
| M	examples/undocumented/python_modular/modelselection_grid_search_linear_modular.py
| M	examples/undocumented/python_modular/streaming_vw_createcache_modular.py
| M	src/shogun/classifier/vw/VowpalWabbit.cpp
|  
* commit ffb7c5454ddb8e98e27bf1481773a91d93ac444d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 31 01:50:55 2011 +0200
| 
|     fix examples
| 
| M	examples/undocumented/python_modular/library_fisher2x3_modular.py
| M	examples/undocumented/python_modular/modelselection_grid_search_linear_modular.py
| M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| M	examples/undocumented/python_modular/streaming_vw_modular.py
|  
* commit 9305ba3cdc32e6ff76ad9e2ea9e1c45a0add6110
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Aug 31 03:48:34 2011 +0400
| 
|     Removed output from python modular examples
| 
| M	examples/undocumented/python_modular/classifier_averaged_perceptron_modular.py
| M	examples/undocumented/python_modular/kernel_anova_modular.py
| M	examples/undocumented/python_modular/library_fisher2x3_modular.py
|  
* commit aff7c0d2a255fb5fdbd57e690fc20c64819dcbb2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 31 01:21:09 2011 +0200
| 
|     remove o umlaut
| 
| M	src/shogun/preprocessor/KernelPCA.h
|  
* commit af951c1ed512fea97a06d62474d2f661464d5eb7
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Aug 31 01:27:21 2011 +0400
| 
|     Added modelselection examples' description
| 
| A	examples/descriptions/modular/modelselection_grid_search_linear.txt
| A	examples/descriptions/modular/modelselection_parameter_tree.txt
|  
* commit 21b24b384daf15a45b1976a39b7a9f3de18ea147
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Aug 31 01:00:16 2011 +0400
| 
|     Fixed segmentation fault error emerged with DistanceMachine serialization
| 
| M	src/shogun/machine/DistanceMachine.cpp
|  
* commit 9580eb84cff8f1b3d9eff2cd80d9ab0796e5058e
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Aug 30 23:54:57 2011 +0400
| 
|     Restore wrong modified python modular examples
| 
| M	examples/undocumented/python_modular/classifier_domainadaptationsvm_modular.py
| M	examples/undocumented/python_modular/evaluation_meansquarederror_modular.py
| M	examples/undocumented/python_modular/mkl_multiclass_modular.py
|  
* commit 03ee3f898edb46fe63ce2e78c44bc3b548d06ec0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 30 20:57:58 2011 +0200
| 
|     mention apply() instead of classify() in tutorial and README
| 
| M	doc/pages/ModularTutorial.mainpage
| M	src/README.developer
|    
*   commit c52988db9b364c990338fcd0cf81fa03dbc74d72
|\  Merge: faf1d9c a42f60d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Aug 30 11:28:51 2011 -0700
| | 
| |     Merge pull request #320 from serialhex/master
| |     
| |     Many more ruby examples
| |   
| * commit a42f60d3dcc679ef77bd7a2b47e29996edfacf29
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Mon Aug 29 21:52:12 2011 -0400
| | 
| |     commenting out pry from modshogun.rb
| | 
| | M	src/interfaces/ruby_modular/modshogun.rb
| |   
| * commit 8ae0fc8b3970cef24e3ed42e168b7d8419fd5824
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Mon Aug 29 21:41:09 2011 -0400
| | 
| |     yes, more examples... i'm just an examplin kind of guy...
| | 
| | M	examples/undocumented/ruby_modular/distribution_histogram_modular.rb
| | A	examples/undocumented/ruby_modular/preprocessor_hessianlocallylinearembedding_modular.rb
| | A	examples/undocumented/ruby_modular/regression_krr_modular.rb
| |   
| * commit 7b44f43f6d6c94dd0aff109f63c828c1090d105f
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Mon Aug 29 00:04:33 2011 -0400
| | 
| |     one last example
| | 
| | A	examples/undocumented/ruby_modular/regression_libsvr_modular.rb
| |   
| * commit 7cdb14c8a59796baf69282d05fb77622d04aa103
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Sun Aug 28 22:45:18 2011 -0400
| | 
| |     adding more files
| | 
| | M	examples/undocumented/python_modular/evaluation_meansquarederror_modular.py
| | M	examples/undocumented/python_modular/mkl_multiclass_modular.py
| | A	examples/undocumented/ruby_modular/features_read_svmlight_format_modular.rb
| | A	examples/undocumented/ruby_modular/kernel_anova_modular.rb
| | A	examples/undocumented/ruby_modular/kernel_cauchy_modular.rb
| | A	examples/undocumented/ruby_modular/kernel_chi2_modular.rb
| | A	examples/undocumented/ruby_modular/kernel_circular_modular.rb
| | A	examples/undocumented/ruby_modular/kernel_combined_custom_poly_modular.rb
| | A	examples/undocumented/ruby_modular/modelselection_parameter_tree_modular.rb
| |   
| * commit 8eab810645a88f1100a667be29c5bb1a1723e592
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Sun Aug 28 20:46:34 2011 -0400
| | 
| |     fixing up some of the examples, having problems with distribution_histogram_modular.rb
| | 
| | M	examples/undocumented/python_modular/classifier_domainadaptationsvm_modular.py
| | A	examples/undocumented/ruby_modular/classifier_custom_kernel_modular.rb
| | A	examples/undocumented/ruby_modular/clustering_hierarchical_modular.rb
| | A	examples/undocumented/ruby_modular/distance_braycurtis_modular.rb
| | A	examples/undocumented/ruby_modular/distance_canberra_modular.rb
| | A	examples/undocumented/ruby_modular/distribution_histogram_modular.rb
| | M	src/interfaces/ruby_modular/modshogun.rb
| |   
| * commit 0788c0ae100430fc0559c8183578503adff67586
|/  Author: Justin Patera <serialhex@gmail.com>
|   Date:   Sun Aug 21 21:39:09 2011 -0400
|   
|       removed the fun proggies i used to help convert the python examples to ruby
|   
|   D	examples/undocumented/ruby_modular/fixer_proggie
|  
* commit faf1d9c043fa8795a3809aa4e038d60c7bdf0e18
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 30 18:04:37 2011 +0200
| 
|     add makefile for vw
| 
| A	applications/vw/Makefile
|  
* commit 5a85eb531b87f545f65842287b3662d79c980cec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 30 17:56:45 2011 +0200
| 
|     fix sailfish application
| 
| M	applications/sailfish/Makefile
| M	applications/sailfish/sailfish.cpp
|  
* commit f0b3121f0a35f5f30b6ae7f7140df9701409cdab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 30 17:45:25 2011 +0200
| 
|     fix ocr example and data for new shogun
| 
| M	applications/ocr/Ai.py
| M	applications/ocr/data/ocr.svm.gz
|  
* commit 312e97b4b59f22eedb88bb5b4b5ab48a1271ec31
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 30 17:44:25 2011 +0200
| 
|     Fix a bug in kernel machine introduced in SGVector transition
|     
|     m_alpha has its own length and should be set and used independently from
|     m_svs otherwise serialization fails
| 
| M	src/shogun/machine/KernelMachine.h
|  
* commit 4ecaa34b98e23ef0b9c0e239b85bfb12470df1bb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 30 17:43:38 2011 +0200
| 
|     remove obsolete multiboost
| 
| D	applications/multiboost/Makefile
| D	applications/multiboost/multiboost.cpp
|  
* commit 6f9f13976ed0178823f3d91283f2257e76a9c17f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 30 09:25:23 2011 +0200
| 
|     improve error output in binary file
| 
| M	src/shogun/io/BinaryFile.cpp
|  
* commit dc68e4f2dbd1405e21435ad730b9b667c315c198
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 30 09:24:57 2011 +0200
| 
|     fix two more 'problematic' ruby examples
| 
| A	examples/undocumented/ruby_modular/features_io_modular.rb
| A	examples/undocumented/ruby_modular/kernel_auc_modular.rb
|  
* commit a4d19caa3230bfeb3ec3ee93875dcdef3eac9204
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Aug 29 23:46:19 2011 +0400
| 
|     Added few examples descriptions
| 
| A	examples/descriptions/modular/distance_normsquared.txt
| A	examples/descriptions/modular/distance_sparseeuclidean.txt
| A	examples/descriptions/modular/distribution_ppwm.txt
| M	examples/descriptions/modular/preprocessor_localtangentspacealignment.txt
| A	examples/descriptions/modular/serialization_complex_example.txt
| A	examples/descriptions/modular/serialization_matrix.txt
|  
* commit fc63be5f32b4dcc8179d24bd18b023d7242ad9e0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Aug 29 18:00:08 2011 +0200
| 
|     mention daniel in contributions
| 
| M	src/CONTRIBUTIONS
|  
* commit ace079df6a31a8e87cddb2ef186aa0144c45f762
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Aug 29 17:49:13 2011 +0200
| 
|     add further c# examples
| 
| A	examples/undocumented/csharp_modular/distance_euclidian_modular.cs
| A	examples/undocumented/csharp_modular/distance_manhattenword_modular.cs
| A	examples/undocumented/csharp_modular/distribution_linearhmm_modular.cs
| A	examples/undocumented/csharp_modular/kernel_anova_modular.cs
| A	examples/undocumented/csharp_modular/kernel_cauchy_modular.cs
| A	examples/undocumented/csharp_modular/kernel_chi2_modular.cs
| A	examples/undocumented/csharp_modular/kernel_circular_modular.cs
| A	examples/undocumented/csharp_modular/kernel_const_modular.cs
| A	examples/undocumented/csharp_modular/kernel_diag_modular.cs
| A	examples/undocumented/csharp_modular/kernel_distance_modular.cs
| A	examples/undocumented/csharp_modular/kernel_inversemultiquadric_modular.cs
| A	examples/undocumented/csharp_modular/kernel_io_modular.cs
| A	examples/undocumented/csharp_modular/kernel_linear_modular.cs
| A	examples/undocumented/csharp_modular/kernel_log_modular.cs
| A	examples/undocumented/csharp_modular/kernel_poly_modular.cs
| A	examples/undocumented/csharp_modular/kernel_rationalquadratic_modular.cs
| A	examples/undocumented/csharp_modular/kernel_salzberg_word_string_modular.cs
| A	examples/undocumented/csharp_modular/kernel_sigmoid_modular.cs
| A	examples/undocumented/csharp_modular/kernel_spherical_modular.cs
| A	examples/undocumented/csharp_modular/kernel_spline_modular.cs
| A	examples/undocumented/csharp_modular/kernel_tstudent_modular.cs
| A	examples/undocumented/csharp_modular/kernel_wave_modular.cs
| A	examples/undocumented/csharp_modular/kernel_wavelet_modular.cs
| A	examples/undocumented/csharp_modular/preprocessor_locallylinearembedding_modular.cs
| A	examples/undocumented/csharp_modular/preprocessor_multidimensionalscaling_modular.cs
| A	examples/undocumented/csharp_modular/preprocessor_normone_modular.cs
| A	examples/undocumented/csharp_modular/preprocessor_prubevarsubmean_modular.cs
| A	examples/undocumented/csharp_modular/preprocessor_randomfouriergausspreproc_modular.cs
|  
* commit 50aac3eb2dd5adaeee591d74c15a640248122742
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Aug 29 06:02:21 2011 +0200
| 
|     don't use len+1 for the string but len
| 
| M	src/interfaces/ruby_modular/swig_typemaps.i
|  
* commit fb4ddae8cdfc1b0fb59338302e5378985d80fd2d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Aug 29 02:58:35 2011 +0400
| 
|     Kernel examples doc
| 
| M	examples/descriptions/modular/classifier_averaged_perceptron.txt
| M	examples/descriptions/modular/classifier_gaussiannaivebayes.txt
| A	examples/descriptions/modular/kernel_anova.txt
| A	examples/descriptions/modular/kernel_cauchy.txt
| A	examples/descriptions/modular/kernel_circular.txt
| A	examples/descriptions/modular/kernel_combined_custom_poly.txt
| A	examples/descriptions/modular/kernel_distantsegments.txt
| A	examples/descriptions/modular/kernel_exponential.txt
| A	examples/descriptions/modular/kernel_inversemultiquadric.txt
| A	examples/descriptions/modular/kernel_log.txt
| A	examples/descriptions/modular/kernel_match_word_string.txt
| A	examples/descriptions/modular/kernel_multiquadric.txt
| A	examples/descriptions/modular/kernel_poly_match_string.txt
| A	examples/descriptions/modular/kernel_power.txt
| A	examples/descriptions/modular/kernel_rationalquadratic.txt
| A	examples/descriptions/modular/kernel_spherical.txt
| A	examples/descriptions/modular/kernel_spline.txt
| A	examples/descriptions/modular/kernel_tstudent.txt
| A	examples/descriptions/modular/kernel_wave.txt
| A	examples/descriptions/modular/kernel_wavelet.txt
|  
* commit 28ce82a1deada606807ad2342ab1d9b36f87797b
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Aug 29 02:36:58 2011 +0400
| 
|     More doc for examples
| 
| A	examples/descriptions/modular/classifier_gaussiannaivebayes.txt
| A	examples/descriptions/modular/evaluation_contingencytableevaluation.txt
| A	examples/descriptions/modular/evaluation_meansquarederror.txt
| A	examples/descriptions/modular/evaluation_multiclassaccuracy.txt
| A	examples/descriptions/modular/evaluation_prcevaluation.txt
| A	examples/descriptions/modular/evaluation_rocevaluation.txt
|  
* commit 2b3ca25d1e693fe493df25f01f4120717cb65d9d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Aug 29 02:24:17 2011 +0400
| 
|     Remove Matrix/VectorTest from java modular examples
| 
| D	examples/undocumented/java_modular/MatrixTest.java
| D	examples/undocumented/java_modular/VectorTest.java
|  
* commit 68985779f02d9d2d7593d797c1bbd40be12676bc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 28 23:52:15 2011 +0200
| 
|     Documentation / Release adjustments for shogun 1.0.0
|     
|     - add put-online target to makefile
|     - fix install documentation
|     - include new lua/java/ruby/csharp examples in doc
|     - rename dirs and symlinks to x -> x_static
| 
| M	doc/Doxyfile
| M	doc/Doxyfile_cn
| M	doc/Makefile
| M	doc/insert_examples.py
| M	doc/insert_examples_cn.py
| M	doc/pages/Examples.mainpage
| M	doc/pages/ExamplesLibshogun.mainpage
| A	doc/pages/ExamplesModularCSharp.mainpage
| A	doc/pages/ExamplesModularJava.mainpage
| A	doc/pages/ExamplesModularLua.mainpage
| M	doc/pages/ExamplesModularPython.mainpage
| A	doc/pages/ExamplesModularRuby.mainpage
| M	doc/pages/ExamplesStaticCmdline.mainpage
| M	doc/pages/ExamplesStaticOctave.mainpage
| M	doc/pages/ExamplesStaticPython.mainpage
| M	doc/pages/ExamplesStaticR.mainpage
| M	doc/pages/Installation.mainpage
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
| M	doc/pages_cn/ExamplesLibshogun.mainpage
| M	doc/pages_cn/ExamplesModularOctave.mainpage
| M	doc/pages_cn/ExamplesModularPython.mainpage
| M	doc/pages_cn/ExamplesModularR.mainpage
| M	doc/pages_cn/ExamplesStaticCmdline.mainpage
| M	doc/pages_cn/ExamplesStaticOctave.mainpage
| M	doc/pages_cn/ExamplesStaticPython.mainpage
| M	doc/pages_cn/ExamplesStaticR.mainpage
| M	examples/Makefile
| D	examples/documented/matlab
| A	examples/documented/matlab_static
| D	examples/documented/octave
| A	examples/documented/octave_static
| M	examples/generate_documented.sh
|  
* commit 76ed3570c57089757ba81145fdb02cba4cdcfe0e
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Aug 29 01:46:33 2011 +0400
| 
|     Preproc -> preprocessor naming transition for modular examples
| 
| D	examples/undocumented/octave_modular/preproc_logplusone_modular.m
| D	examples/undocumented/octave_modular/preproc_normone_modular.m
| D	examples/undocumented/octave_modular/preproc_prunevarsubmean_modular.m
| A	examples/undocumented/octave_modular/preprocessor_logplusone_modular.m
| A	examples/undocumented/octave_modular/preprocessor_normone_modular.m
| A	examples/undocumented/octave_modular/preprocessor_prunevarsubmean_modular.m
| D	examples/undocumented/r_modular/preproc_logplusone_modular.R
| D	examples/undocumented/r_modular/preproc_normone_modular.R
| D	examples/undocumented/r_modular/preproc_prunevarsubmean_modular.R
| A	examples/undocumented/r_modular/preprocessor_logplusone_modular.R
| A	examples/undocumented/r_modular/preprocessor_normone_modular.R
| A	examples/undocumented/r_modular/preprocessor_prunevarsubmean_modular.R
|  
* commit a1263800324e8987945ab4c13aaf9c0d46cc776e
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Aug 29 01:30:53 2011 +0400
| 
|     Renamed wrong called laplacian eigenmaps example description
| 
| D	examples/descriptions/modular/preprocessor_laplacianeigemaps.txt
| A	examples/descriptions/modular/preprocessor_laplacianeigenmaps.txt
|  
* commit 4887ddc5c73970ed15192b97629cc152557e3a4f
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Aug 29 01:27:50 2011 +0400
| 
|     Added reference for kPCA
| 
| M	src/shogun/preprocessor/KernelPCA.h
|  
* commit f949f36c8d298375a41ed13b2419994510f03824
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Aug 29 01:27:04 2011 +0400
| 
|     Example doc updates
| 
| A	examples/descriptions/modular/classifier_averaged_perceptron.txt
| D	examples/descriptions/modular/preproc_logplusone.txt
| D	examples/descriptions/modular/preproc_normone.txt
| D	examples/descriptions/modular/preproc_prunevarsubmean.txt
| D	examples/descriptions/modular/preproc_sortulongstring.txt
| D	examples/descriptions/modular/preproc_sortwordstring.txt
| A	examples/descriptions/modular/preprocessor_hessianlocallylinearembedding.txt
| A	examples/descriptions/modular/preprocessor_isomap.txt
| A	examples/descriptions/modular/preprocessor_kernellocallylinearembedding.txt
| A	examples/descriptions/modular/preprocessor_kernelpca.txt
| A	examples/descriptions/modular/preprocessor_laplacianeigemaps.txt
| A	examples/descriptions/modular/preprocessor_locallylinearembedding.txt
| A	examples/descriptions/modular/preprocessor_localtangentspacealignment.txt
| A	examples/descriptions/modular/preprocessor_logplusone.txt
| A	examples/descriptions/modular/preprocessor_multidimensionalscaling.txt
| A	examples/descriptions/modular/preprocessor_normone.txt
| A	examples/descriptions/modular/preprocessor_pca.txt
| A	examples/descriptions/modular/preprocessor_prunevarsubmean.txt
| A	examples/descriptions/modular/preprocessor_randomfouriergausspreproc.txt
| A	examples/descriptions/modular/preprocessor_sortulongstring.txt
| A	examples/descriptions/modular/preprocessor_sortwordstring.txt
|  
* commit b2d77a9bd46ab4a0c5b02f64652bc8a08147286d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 28 22:07:20 2011 +0200
| 
|     remove example
| 
| D	examples/kernel_distance.py
|  
* commit eb4008813c6dd1e47fc2ca62d59c6c96131c2d80
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 28 22:07:09 2011 +0200
| 
|     some progress on make release magic
| 
| M	Makefile
|  
* commit da0f5b452c1d48c4c0d601d57440c54e08cc787b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 28 21:59:12 2011 +0200
| 
|     generate changelog based on git history
| 
| M	src/Makefile
|  
* commit 95f5e1ea7479a3386cd4774a9590f5a70bd1e30f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 28 21:58:25 2011 +0200
| 
|     enable csharp autodetection in configure
| 
| M	src/configure
|  
* commit 931e9139c51d0228f00319ddce0b7489cd2e45b8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 28 21:58:00 2011 +0200
| 
|     generate changelog based on git history
| 
| M	src/ChangeLog
|    
*   commit 2f0a2c86e4af6ea4aca223ebbe40e4d4023fdd8a
|\  Merge: 973318c 1b08079
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Aug 28 11:21:48 2011 -0700
| | 
| |     Merge pull request #319 from frx/streaming_vw
| |     
| |     Made VW output more exact.
| |   
| * commit 1b08079b456cd6a782e46b237bf04f4daf919850
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Sun Aug 28 17:37:20 2011 +0530
| | 
| |     Made VW output more exact.
| | 
| | M	src/shogun/classifier/vw/VowpalWabbit.cpp
| | M	src/shogun/classifier/vw/VowpalWabbit.h
| |   
* | commit 973318c9d39cc476b8eccd20d6e21199d2a2527d
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Sun Aug 28 19:51:14 2011 +0200
|   
|       Fix tests for java and c#
|       
|       - remove duplicate geodesic example in c#
|       - fix java's check.sh to exclude Load.java
|   
|   D	examples/undocumented/csharp_modular/distance_geodesic_modular (1).cs
|   M	examples/undocumented/java_modular/check.sh
|  
* commit 60ad972b9d477fa380cd3547f85285a12f7bfac7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 28 12:18:24 2011 +0200
| 
|     assert that m_pwm is set
| 
| M	src/shogun/distributions/PositionalPWM.cpp
|  
* commit a74aaf03eb8a71190c1975501a7b8f91d949dc8a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 28 12:09:51 2011 +0200
| 
|     fix ppwm example and add option to check to run just a few examples
| 
| M	examples/undocumented/java_modular/check.sh
| M	examples/undocumented/java_modular/distribution_ppwm_modular.java
|    
*   commit 0deb8cabaa0f9fcbb2904e35ae52bb84bdfe7019
|\  Merge: 04d6769 5219f4d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Aug 28 01:49:39 2011 -0700
| | 
| |     Merge pull request #318 from frx/streaming_vw
| |     
| |     Better documentation and some issues resolved in StreamingSparseFeatures
| |   
| * commit 5219f4df1516a784f78f14445f3f5e9c61e6d8c6
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Sun Aug 28 12:03:43 2011 +0530
| | 
| |     Reverted unwanted commit in data.
| | 
| | M	data
| |   
| * commit 44936ba0993d631f463825febcd71e4e7e269afd
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Sun Aug 28 11:41:20 2011 +0530
| | 
| |     Better doc for StreamingSparseFeatures.
| | 
| | M	src/shogun/features/StreamingSparseFeatures.h
| |   
| * commit 620710cd75d57a17b57d099ade3519fb17af306c
|/  Author: Shashwat Lal Das <fraggerx@gmail.com>
|   Date:   Sun Aug 28 09:00:06 2011 +0530
|   
|       expand_if_required now more accurate and sort_features modified for correct memory freeing in StreamingSparseFeatures.
|   
|   M	data
|   M	src/shogun/features/StreamingSparseFeatures.h
|  
* commit 04d6769fb9473600879877f4efc9b7b5a78f38ac
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 28 06:44:10 2011 +0200
| 
|     add Daniels first batch of .cs examples
| 
| A	examples/undocumented/csharp_modular/distance_canberra_modular.cs
| A	examples/undocumented/csharp_modular/distance_chebyshew_modular.cs
| A	examples/undocumented/csharp_modular/distance_chisquare_modular.cs
| A	examples/undocumented/csharp_modular/distance_cosine_modular.cs
| A	examples/undocumented/csharp_modular/distance_geodesic_modular (1).cs
| A	examples/undocumented/csharp_modular/distance_geodesic_modular.cs
| A	examples/undocumented/csharp_modular/distance_jensen_modular.cs
| A	examples/undocumented/csharp_modular/distance_minkowski_modular.cs
| A	examples/undocumented/csharp_modular/distance_normsquared_modular.cs
| A	examples/undocumented/csharp_modular/distance_tanimoto_modular.cs
|  
* commit c5ea1a34bd18820944e851d4215930d306a1b526
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 28 06:33:20 2011 +0200
| 
|     remove tmp generated files from java examples
| 
| D	examples/undocumented/java_modular/blaah.asc
| D	examples/undocumented/java_modular/gaussian_train.ascii
| D	examples/undocumented/java_modular/tmp.dat
|  
* commit 5ab50a60ff58f6c9d85a31c02d9aeffd9eb64da2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 28 06:33:09 2011 +0200
| 
|     add . to ruby path
| 
| M	src/Makefile.template
|  
* commit 417d6c9d8df89ff94b945140f12bb4bae04c8166
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Aug 28 03:19:01 2011 +0400
| 
|     #ifndef WIN32 to #ifdef HAVE_LAPACK transition
| 
| M	src/shogun/base/Parallel.h
| M	src/shogun/classifier/svm/SVM.cpp
| M	src/shogun/classifier/svm/SVMLight.cpp
| M	src/shogun/classifier/svm/SVMLightOneClass.cpp
| M	src/shogun/clustering/Hierarchical.cpp
| M	src/shogun/clustering/KMeans.cpp
| M	src/shogun/features/DotFeatures.cpp
| M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| M	src/shogun/kernel/Kernel.cpp
| M	src/shogun/kernel/SpectrumRBFKernel.cpp
| M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/shogun/machine/DistanceMachine.cpp
| M	src/shogun/machine/KernelMachine.cpp
| M	src/shogun/regression/svr/SVRLight.cpp
|  
* commit 5599548bab313dce39e884bf7f578e7bedaa3fbe
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Aug 28 01:55:24 2011 +0400
| 
|     Hopefully final fixes for java examples
| 
| M	examples/undocumented/java_modular/features_string_word_modular.java
| M	examples/undocumented/java_modular/kernel_combined_modular.java
| M	examples/undocumented/java_modular/kernel_exponential_modular.java
| M	examples/undocumented/java_modular/kernel_histogram_word_string_modular.java
| M	examples/undocumented/java_modular/kernel_poly_match_string_modular.java
| M	examples/undocumented/java_modular/kernel_poly_match_word_string_modular.java
| M	examples/undocumented/java_modular/kernel_salzberg_word_string_modular.java
| M	examples/undocumented/java_modular/kernel_weighted_degree_position_string_modular.java
| M	examples/undocumented/java_modular/kernel_weighted_degree_string_modular.java
| M	examples/undocumented/java_modular/mkl_multiclass_modular.java
| M	examples/undocumented/java_modular/preprocessor_sortulongstring_modular.java
| M	examples/undocumented/java_modular/preprocessor_sortwordstring_modular.java
|  
* commit 3dab24f0363b694a94059ec4f1182d5ab02f26b2
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Aug 28 01:31:17 2011 +0400
| 
|     MKL java modular example fix
| 
| M	examples/undocumented/java_modular/mkl_multiclass_modular.java
|  
* commit a557c4bda44fc8299e9d7dfa6d15eeb8648e57fa
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Aug 28 01:21:04 2011 +0400
| 
|     More fixes for java modular examples
| 
| A	examples/undocumented/java_modular/blaah.asc
| A	examples/undocumented/java_modular/foo_uncompressed.str
| A	examples/undocumented/java_modular/gaussian_train.ascii
| M	examples/undocumented/java_modular/kernel_fisher_modular.java
| M	examples/undocumented/java_modular/kernel_top_modular.java
| M	examples/undocumented/java_modular/mkl_multiclass_modular.java
| M	examples/undocumented/java_modular/tests_check_commwordkernel_memleak_modular.java
| A	examples/undocumented/java_modular/tmp.dat
|  
* commit bd140da4a313bc807f10a055df64c1e9f472f315
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Aug 27 19:58:21 2011 +0200
| 
|     add exception support in csharp (fixes warnings about missing excode in csout typemap)
| 
| M	src/interfaces/csharp_modular/swig_typemaps.i
|    
*   commit 3c81fe487e86fc1da9b5ae3f46c0557a96bfcc4d
|\  Merge: a5ad47f 1acb396
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Aug 27 03:41:47 2011 -0700
| | 
| |     Merge pull request #317 from frx/streaming_vw
| |     
| |     StreamingSparseFeatures improvements
| |   
| * commit 1acb396b635d77477cbf90915e867e67a24ca87a
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Sat Aug 27 16:03:14 2011 +0530
| | 
| |     Added missing StreamingStringFeatures to modular.
| | 
| | M	src/interfaces/modular/Features.i
| | M	src/interfaces/modular/Features_includes.i
| |   
| * commit 5982e858a6f814cbdcfd8f425871add425626958
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Sat Aug 27 15:15:50 2011 +0530
| | 
| |     Improvements in StreamingSparseFeatures.
| | 
| | M	src/shogun/features/StreamingSparseFeatures.h
| | M	src/shogun/features/StreamingStringFeatures.h
| |   
* | commit a5ad47f0e8845fe080b15d3f9738e7da47f9479b
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Sat Aug 27 12:37:12 2011 +0200
|   
|       fix ruby scripts by adding shogun helpers to tests
|   
|   M	examples/undocumented/ruby_modular/check.sh
|   A	examples/undocumented/ruby_modular/shogun_helpers.rb
|  
* commit a0cc72669879733382c5fc9ca3670b024864f1e7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Aug 27 06:50:33 2011 +0200
| 
|     unpack parameter list
| 
| M	examples/undocumented/ruby_modular/kernel_gaussian_modular.rb
|  
* commit 8afdbf1b83cbd043d9a07015f4f402d692b2df93
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Aug 27 06:43:47 2011 +0200
| 
|     temporarily removing non-working ruby examples
| 
| D	examples/undocumented/ruby_modular/classifier_averaged_perceptron_modular.rb
| D	examples/undocumented/ruby_modular/classifier_custom_kernel_modular.rb
| D	examples/undocumented/ruby_modular/classifier_domainadaptationsvm_modular.rb
| D	examples/undocumented/ruby_modular/classifier_gaussiannaivebayes_modular.rb
| D	examples/undocumented/ruby_modular/classifier_gmnpsvm_modular.rb
| D	examples/undocumented/ruby_modular/classifier_gpbtsvm_modular.rb
| D	examples/undocumented/ruby_modular/classifier_knn_modular.rb
| D	examples/undocumented/ruby_modular/classifier_larank_modular.rb
| D	examples/undocumented/ruby_modular/classifier_lda_modular.rb
| D	examples/undocumented/ruby_modular/classifier_liblinear_modular.rb
| D	examples/undocumented/ruby_modular/classifier_libsvm_modular.rb
| D	examples/undocumented/ruby_modular/classifier_libsvmmulticlass_modular.rb
| D	examples/undocumented/ruby_modular/classifier_libsvmoneclass_modular.rb
| D	examples/undocumented/ruby_modular/classifier_mpdsvm_modular.rb
| D	examples/undocumented/ruby_modular/classifier_perceptron_modular.rb
| D	examples/undocumented/ruby_modular/classifier_subgradientsvm_modular.rb
| D	examples/undocumented/ruby_modular/classifier_svmlight_batch_linadd_modular.rb
| D	examples/undocumented/ruby_modular/classifier_svmlight_linear_term_modular.rb
| D	examples/undocumented/ruby_modular/classifier_svmlight_modular.rb
| D	examples/undocumented/ruby_modular/classifier_svmlin_modular.rb
| D	examples/undocumented/ruby_modular/classifier_svmocas_modular.rb
| D	examples/undocumented/ruby_modular/classifier_svmsgd_modular.rb
| D	examples/undocumented/ruby_modular/clustering_gmm_modular.rb
| D	examples/undocumented/ruby_modular/clustering_hierarchical_modular.rb
| D	examples/undocumented/ruby_modular/clustering_kmeans_modular.rb
| D	examples/undocumented/ruby_modular/distance_braycurtis_modular.rb
| D	examples/undocumented/ruby_modular/distance_canberra_modular.rb
| D	examples/undocumented/ruby_modular/distance_canberraword_modular.rb
| D	examples/undocumented/ruby_modular/distance_chebyshew_modular.rb
| D	examples/undocumented/ruby_modular/distance_chisquare_modular.rb
| D	examples/undocumented/ruby_modular/distance_cosine_modular.rb
| D	examples/undocumented/ruby_modular/distance_euclidian_modular.rb
| D	examples/undocumented/ruby_modular/distance_geodesic_modular.rb
| D	examples/undocumented/ruby_modular/distance_hammingword_modular.rb
| D	examples/undocumented/ruby_modular/distance_jensen_modular.rb
| D	examples/undocumented/ruby_modular/distance_manhatten_modular.rb
| D	examples/undocumented/ruby_modular/distance_manhattenword_modular.rb
| D	examples/undocumented/ruby_modular/distance_minkowski_modular.rb
| D	examples/undocumented/ruby_modular/distance_normsquared_modular.rb
| D	examples/undocumented/ruby_modular/distance_sparseeuclidean_modular.rb
| D	examples/undocumented/ruby_modular/distance_tanimoto_modular.rb
| D	examples/undocumented/ruby_modular/distribution_histogram_modular.rb
| D	examples/undocumented/ruby_modular/distribution_hmm_modular.rb
| D	examples/undocumented/ruby_modular/distribution_linearhmm_modular.rb
| D	examples/undocumented/ruby_modular/distribution_ppwm_modular.rb
| D	examples/undocumented/ruby_modular/evaluation_contingencytableevaluation_modular.rb
| D	examples/undocumented/ruby_modular/evaluation_meansquarederror_modular.rb
| D	examples/undocumented/ruby_modular/evaluation_multiclassaccuracy_modular.rb
| D	examples/undocumented/ruby_modular/evaluation_prcevaluation_modular.rb
| D	examples/undocumented/ruby_modular/evaluation_rocevaluation_modular.rb
| D	examples/undocumented/ruby_modular/features_io_modular.rb
| D	examples/undocumented/ruby_modular/features_read_svmlight_format_modular.rb
| D	examples/undocumented/ruby_modular/features_simple_byte_modular.rb
| D	examples/undocumented/ruby_modular/features_simple_longint_modular.rb
| D	examples/undocumented/ruby_modular/features_simple_modular.rb
| D	examples/undocumented/ruby_modular/features_simple_real_modular.rb
| D	examples/undocumented/ruby_modular/features_snp_modular.rb
| D	examples/undocumented/ruby_modular/features_sparse_modular.rb
| D	examples/undocumented/ruby_modular/features_string_char_compressed_modular.rb
| D	examples/undocumented/ruby_modular/features_string_file_char_modular.rb
| D	examples/undocumented/ruby_modular/features_string_file_modular.rb
| D	examples/undocumented/ruby_modular/features_string_hashed_wd_modular.rb
| D	examples/undocumented/ruby_modular/features_string_sliding_window_modular.rb
| D	examples/undocumented/ruby_modular/features_string_ulong_modular.rb
| D	examples/undocumented/ruby_modular/features_string_word_modular.rb
| D	examples/undocumented/ruby_modular/kernel_anova_modular.rb
| D	examples/undocumented/ruby_modular/kernel_auc_modular.rb
| D	examples/undocumented/ruby_modular/kernel_cauchy_modular.rb
| D	examples/undocumented/ruby_modular/kernel_chi2_modular.rb
| D	examples/undocumented/ruby_modular/kernel_circular_modular.rb
| D	examples/undocumented/ruby_modular/kernel_combined_custom_poly_modular.rb
| D	examples/undocumented/ruby_modular/kernel_combined_modular.rb
| D	examples/undocumented/ruby_modular/kernel_comm_ulong_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_comm_word_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_const_modular.rb
| D	examples/undocumented/ruby_modular/kernel_custom_modular.rb
| D	examples/undocumented/ruby_modular/kernel_diag_modular.rb
| D	examples/undocumented/ruby_modular/kernel_distance_modular.rb
| D	examples/undocumented/ruby_modular/kernel_distantsegments_modular.rb
| D	examples/undocumented/ruby_modular/kernel_exponential_modular.rb
| D	examples/undocumented/ruby_modular/kernel_fisher_modular.rb
| D	examples/undocumented/ruby_modular/kernel_fixed_degree_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_gaussian_shift_modular.rb
| D	examples/undocumented/ruby_modular/kernel_histogram_word_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_inversemultiquadric_modular.rb
| D	examples/undocumented/ruby_modular/kernel_io_modular.rb
| D	examples/undocumented/ruby_modular/kernel_linear_byte_modular.rb
| D	examples/undocumented/ruby_modular/kernel_linear_modular.rb
| D	examples/undocumented/ruby_modular/kernel_linear_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_linear_word_modular.rb
| D	examples/undocumented/ruby_modular/kernel_local_alignment_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_locality_improved_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_log_modular.rb
| D	examples/undocumented/ruby_modular/kernel_match_word_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_multiquadric_modular.rb
| D	examples/undocumented/ruby_modular/kernel_oligo_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_poly_match_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_poly_match_word_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_poly_modular.rb
| D	examples/undocumented/ruby_modular/kernel_power_modular.rb
| D	examples/undocumented/ruby_modular/kernel_rationalquadratic_modular.rb
| D	examples/undocumented/ruby_modular/kernel_salzberg_word_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_sigmoid_modular.rb
| D	examples/undocumented/ruby_modular/kernel_simple_locality_improved_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_sparse_gaussian_modular.rb
| D	examples/undocumented/ruby_modular/kernel_sparse_linear_modular.rb
| D	examples/undocumented/ruby_modular/kernel_sparse_poly_modular.rb
| D	examples/undocumented/ruby_modular/kernel_spherical_modular.rb
| D	examples/undocumented/ruby_modular/kernel_spline_modular.rb
| D	examples/undocumented/ruby_modular/kernel_top_modular.rb
| D	examples/undocumented/ruby_modular/kernel_tstudent_modular.rb
| D	examples/undocumented/ruby_modular/kernel_wave_modular.rb
| D	examples/undocumented/ruby_modular/kernel_wavelet_modular.rb
| D	examples/undocumented/ruby_modular/kernel_weighted_comm_word_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_weighted_degree_position_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_weighted_degree_string_modular.rb
| D	examples/undocumented/ruby_modular/library_fisher2x3_modular.rb
| D	examples/undocumented/ruby_modular/mkl_binclass_modular.rb
| D	examples/undocumented/ruby_modular/mkl_multiclass_modular.rb
| D	examples/undocumented/ruby_modular/modelselection_grid_search_linear_modular.rb
| D	examples/undocumented/ruby_modular/modelselection_parameter_tree_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_hessianlocallylinearembedding_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_isomap_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_kernelpca_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_laplacianeigenmaps_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_locallylinearembedding_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_localtangentspacealignment_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_logplusone_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_multidimensionalscaling_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_normone_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_pca_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_prunevarsubmean_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_randomfouriergausspreproc_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_sortulongstring_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_sortwordstring_modular.rb
| D	examples/undocumented/ruby_modular/regression_krr_modular.rb
| D	examples/undocumented/ruby_modular/regression_libsvr_modular.rb
| D	examples/undocumented/ruby_modular/regression_svrlight_modular.rb
| D	examples/undocumented/ruby_modular/serialization_complex_example.rb
| D	examples/undocumented/ruby_modular/serialization_matrix_modular.rb
| D	examples/undocumented/ruby_modular/serialization_svmlight_modular.rb
| D	examples/undocumented/ruby_modular/shogun_helpers.rb
| D	examples/undocumented/ruby_modular/structure_dynprog_modular.rb
| D	examples/undocumented/ruby_modular/tests_check_commwordkernel_memleak_modular.rb
| D	examples/undocumented/ruby_modular/trancekoder.rb
|  
* commit 1b6690523464883b2413310776925b76ab995fc9
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Aug 27 05:54:07 2011 +0400
| 
|     Changed matrix to make DSYGVX work right in mathematics_lapack, added mathematics_lapack
| 
| M	examples/undocumented/libshogun/Makefile
| M	examples/undocumented/libshogun/mathematics_lapack.cpp
|  
* commit c7b59c1c7e23db3ca8ec915830ad4d0e1415532f
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Aug 27 03:37:55 2011 +0400
| 
|     Added libshogun LAPACK test
| 
| A	examples/undocumented/libshogun/mathematics_lapack.cpp
|  
* commit ddb13ac40698c72c5f25719ef7398dec2cdb3901
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Aug 27 03:10:06 2011 +0400
| 
|     Updated gitignore
| 
| M	.gitignore
|    
*   commit 9467e97aaf8a59faaab0d4e937969b42b038fb75
|\  Merge: 23456e6 c23c455
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 27 03:08:21 2011 +0400
| | 
| |     Merge branch 'gmm' of git://github.com/alesis/shogun
| |   
| * commit c23c4559ca963b77d2ecac498f0cc94668b7798e
| | Author: Alesis Novik <alesisnov@gmail.com>
| | Date:   Fri Aug 26 23:26:28 2011 +0100
| | 
| |     Updated GMM documentation
| | 
| | M	src/shogun/clustering/GMM.h
| |   
* | commit 23456e686a9d80e61fa0c89e41c46d862005ffea
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 27 03:05:21 2011 +0400
| | 
| |     Fixes for java examples
| | 
| | M	examples/undocumented/java_modular/classifier_averaged_perceptron_modular.java
| | M	examples/undocumented/java_modular/classifier_svmlight_linear_term_modular.java
| | M	examples/undocumented/java_modular/classifier_svmlight_modular.java
| | M	examples/undocumented/java_modular/clustering_hierarchical_modular.java
| | M	examples/undocumented/java_modular/clustering_kmeans_modular.java
| | M	examples/undocumented/java_modular/distribution_hmm_modular.java
| | M	examples/undocumented/java_modular/distribution_linearhmm_modular.java
| | M	examples/undocumented/java_modular/distribution_ppwm_modular.java
| | M	examples/undocumented/java_modular/features_snp_modular.java
| | M	examples/undocumented/java_modular/features_string_char_compressed_modular.java
| | M	examples/undocumented/java_modular/features_string_char_modular.java
| | M	examples/undocumented/java_modular/features_string_file_char_modular.java
| | M	examples/undocumented/java_modular/features_string_file_modular.java
| | M	examples/undocumented/java_modular/features_string_hashed_wd_modular.java
| | M	examples/undocumented/java_modular/features_string_sliding_window_modular.java
| | M	examples/undocumented/java_modular/features_string_ulong_modular.java
| | M	examples/undocumented/java_modular/features_string_word_modular.java
| | M	examples/undocumented/java_modular/kernel_anova_modular.java
| | M	examples/undocumented/java_modular/kernel_top_modular.java
| | D	examples/undocumented/java_modular/preprocessor_pcacut_modular.java
| |   
* | commit af53b6fdd306b57eae683c4ffa65b67ea839efa4
|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|   Date:   Sat Aug 27 03:04:26 2011 +0400
|   
|       Fixes for lapack wrappers
|   
|   M	src/shogun/mathematics/lapack.cpp
|  
* commit cc0f88874ffe1bf147fe08637d7d16b78378b711
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Aug 27 01:33:43 2011 +0400
| 
|     Hack made hemisphere and swissroll work both in matplotlib 0.99 and >1.0
| 
| M	examples/undocumented/python_modular/graphical/hemisphere.py
| M	examples/undocumented/python_modular/graphical/swissroll.py
|  
* commit 139c42aa48e8bab1da2f54f41576983df83dec98
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Aug 27 00:36:51 2011 +0400
| 
|     Attempt to fix DSYGVX
| 
| M	src/shogun/mathematics/lapack.cpp
|  
* commit f1cc27a3f40708e4b8e74533e9512c4b4d9bcda0
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Aug 27 00:04:43 2011 +0400
| 
|     Data update
| 
| M	data
|  
* commit 0fcedaa4fcfc20bf773c507c252989616d1952e0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 26 22:01:56 2011 +0200
| 
|     remove all_evaluation
| 
| D	examples/undocumented/python_modular/graphical/all_evaluation.py
|  
* commit 301e5f5468e928d62999c6e9277b83d0518987ab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 26 21:35:51 2011 +0200
| 
|     also ifdef HAVE_LAPACK liblinear based examples
| 
| M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| M	examples/undocumented/libshogun/parameter_modsel_parameters.cpp
|  
* commit c5e08d9c65218d49d879ad41ff616155d6265a6b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 26 21:32:44 2011 +0200
| 
|     ifdef HAVE_ARPACK example to not fail on buildbot test
| 
| M	examples/undocumented/libshogun/mathematics_arpack.cpp
|  
* commit d8986e9db1b1df444e83c1a05c385c937af2f135
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 26 21:27:49 2011 +0200
| 
|     use int64 to represent c#/c ptr
| 
| M	src/interfaces/csharp_modular/swig_typemaps.i
|  
* commit a920d11eb73cacf452d890d4f2474c6bfb9504b1
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Aug 26 20:57:43 2011 +0400
| 
|     More informative error checking in laplacian eigenmaps
| 
| M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
|  
* commit aa9557397b0e5a80737a9d67cc20b3cb451925e3
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Aug 26 20:57:17 2011 +0400
| 
|     Remove asserts from DSYGVX
| 
| M	src/shogun/mathematics/lapack.cpp
|  
* commit 148b751772a308a5b338dbe7315f330c70f80955
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 26 17:46:14 2011 +0200
| 
|     fix int_32_t typo
| 
| M	src/interfaces/csharp_modular/swig_typemaps.i
|    
*   commit 3afc64d442334f234495312769416b9f660cb4c9
|\  Merge: fcf7316 3dbfc26
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 26 08:40:54 2011 -0700
| | 
| |     Merge pull request #315 from frx/streaming_vw
| |     
| |     Added vw_constants.h to repository.
| |   
| * commit 3dbfc26bfeb29433b7e6795c254ff2cc99387e60
|/  Author: Shashwat Lal Das <fraggerx@gmail.com>
|   Date:   Fri Aug 26 21:08:08 2011 +0530
|   
|       Added vw_constants.h to repository.
|   
|   A	src/shogun/classifier/vw/vw_constants.h
|    
*   commit fcf73169ab1f879842af6fac9db8f8fb5f916525
|\  Merge: 653e96c eb8b842
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 26 08:20:16 2011 -0700
| | 
| |     Merge pull request #314 from sploving/master
| |     
| |     fix rows and cols bug
| |   
| * commit eb8b842f3f8523817438089e2374ab42e0c5ad44
| | Author: Baozeng Ding <sploving1@gmail.com>
| | Date:   Fri Aug 26 23:06:36 2011 +0800
| | 
| |     fix rows and cols type bug
| | 
| | M	src/interfaces/csharp_modular/swig_typemaps.i
| |     
* |   commit 653e96ccec7c40e71e6d178dfcb3e66e96c25d0c
|\ \  Merge: 2226301 54bc14c
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Aug 26 07:45:36 2011 -0700
| | | 
| | |     Merge pull request #313 from frx/streaming_vw
| | |     
| | |     Conversion of vw's size_t to typedef'd uint32_t
| | |    
| * | commit 54bc14c83801554f746dd83bc6c5214e711db36b
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Fri Aug 26 20:10:28 2011 +0530
| |   
| |       Conversion of vw's size_t to typedef'd uint32_t
| |   
| |   M	src/shogun/classifier/vw/VowpalWabbit.cpp
| |   M	src/shogun/classifier/vw/VowpalWabbit.h
| |   M	src/shogun/classifier/vw/VwEnvironment.cpp
| |   M	src/shogun/classifier/vw/VwEnvironment.h
| |   M	src/shogun/classifier/vw/VwParser.cpp
| |   M	src/shogun/classifier/vw/VwRegressor.cpp
| |   M	src/shogun/classifier/vw/cache/VwNativeCacheReader.cpp
| |   M	src/shogun/classifier/vw/cache/VwNativeCacheReader.h
| |   M	src/shogun/classifier/vw/cache/VwNativeCacheWriter.cpp
| |   M	src/shogun/classifier/vw/cache/VwNativeCacheWriter.h
| |   M	src/shogun/classifier/vw/learners/VwAdaptiveLearner.cpp
| |   M	src/shogun/classifier/vw/learners/VwAdaptiveLearner.h
| |   M	src/shogun/classifier/vw/learners/VwNonAdaptiveLearner.cpp
| |   M	src/shogun/classifier/vw/learners/VwNonAdaptiveLearner.h
| |   M	src/shogun/classifier/vw/vw_common.h
| |   M	src/shogun/classifier/vw/vw_example.cpp
| |   M	src/shogun/classifier/vw/vw_example.h
| |   M	src/shogun/classifier/vw/vw_math.cpp
| |   M	src/shogun/classifier/vw/vw_math.h
| |   M	src/shogun/features/StreamingVwFeatures.cpp
| |   M	src/shogun/features/StreamingVwFeatures.h
| |     
* |   commit 2226301d1ff0359cbb26c1fb075690003dd39f5b
|\ \  Merge: 911732f 1c36dfa
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Fri Aug 26 06:11:04 2011 -0700
| |   
| |       Merge pull request #312 from sploving/master
| |       
| |       fix stringlist bug
| |   
| * commit 1c36dfa09e4fa28d6e08c1a2d9648ea41b766ce0
| | Author: Baozeng Ding <sploving1@gmail.com>
| | Date:   Fri Aug 26 21:08:51 2011 +0800
| | 
| |     fix stringlist bug
| | 
| | M	src/interfaces/csharp_modular/swig_typemaps.i
| |   
* | commit 911732fa0e26f9ee234f19dec53f4e9890d22398
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 26 16:42:52 2011 +0400
| | 
| |     Fixes for java typemaps
| | 
| | M	src/interfaces/java_modular/swig_typemaps.i
| |   
* | commit 9c4972b0a4e785e3c4821aa65fdf69bddcbd45bc
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 26 16:22:16 2011 +0400
| | 
| |     Some java examples fixes
| | 
| | M	examples/undocumented/java_modular/classifier_liblinear_modular.java
| | M	examples/undocumented/java_modular/distribution_histogram_modular.java
| | M	examples/undocumented/java_modular/features_simple_modular.java
| |   
* | commit 63b5aec58bf1f8b1cb6d13cfd3db975596133d1e
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 26 16:21:30 2011 +0400
| | 
| |     Changed memory allocation method in java typemaps
| | 
| | M	src/interfaces/java_modular/swig_typemaps.i
| |   
* | commit 5630a1dc81a62cfcedb9494353075e56f57e81e0
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 26 16:20:56 2011 +0400
| | 
| |     Removed unnecessary double definitions of methods at string kernels
| | 
| | M	src/shogun/kernel/SpectrumMismatchRBFKernel.h
| | M	src/shogun/kernel/WeightedDegreeStringKernel.h
| |   
* | commit 02feda6688c361e9df2f5bf661f9756cf630c743
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 26 16:20:19 2011 +0400
| | 
| |     Fixes for Histogram
| | 
| | M	src/shogun/distributions/Histogram.cpp
| |     
* |   commit 58b557f9b9b8797a7662c5b368b460441dc15a1b
|\ \  Merge: 4a4d755 1d81f89
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Aug 26 04:40:09 2011 -0700
| | | 
| | |     Merge pull request #311 from frx/streaming_vw
| | |     
| | |     StreamingStringFeatures improvements
| | |    
| * | commit 1d81f8948eebe9781c996f29c15c53e0bde14c96
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Fri Aug 26 17:07:41 2011 +0530
| | | 
| | |     Removed pointer checking before SG_UNREF in StreamingStringFeatures.
| | | 
| | | M	src/shogun/features/StreamingStringFeatures.h
| | |    
| * | commit a6bf023b79a68115f03e84db88ea592a86a18918
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Fri Aug 26 16:50:19 2011 +0530
| | | 
| | |     Commented StreamingStringFeatures example better.
| | | 
| | | M	examples/undocumented/libshogun/streaming_stringfeatures.cpp
| | |    
| * | commit 65a020c9f4bd262f90c400ac3d1031716d97f7a0
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Fri Aug 26 16:47:15 2011 +0530
| | | 
| | |     StreamingStringFeatures libshogun example.
| | | 
| | | A	examples/undocumented/libshogun/streaming_stringfeatures.cpp
| | |    
| * | commit 66c4ffd638d00d31cdeff766df5019b5c6da0bad
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Fri Aug 26 16:12:55 2011 +0530
| |   
| |       Improvements in StreamingStringFeatures and reindentation of ParseBuffer.
| |   
| |   M	src/shogun/features/StreamingStringFeatures.h
| |   M	src/shogun/io/ParseBuffer.h
| |   M	src/shogun/io/StreamingFile.cpp
| |   
* | commit 4a4d7550af550c63883524428fd10aeb82337b1d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 26 12:35:55 2011 +0200
| | 
| |     turn on ignores again as the culprit was broken java detection in configure
| | 
| | M	src/interfaces/modular/modshogun_ignores.i
| |   
* | commit cfbef756f770ad34f53497722e52e90d5fbb8c03
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 26 11:45:06 2011 +0200
| | 
| |     fix make doc
| | 
| | M	doc/Makefile
| |   
* | commit 3997e8da94e95c8fce6eb14de50c0eb48a326e0d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 26 10:45:36 2011 +0200
| | 
| |     add check examples targets
| | 
| | M	src/Makefile.template
| |   
* | commit ef7f6a37d0748d7f59a907a2a6801154ed6af973
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 26 10:44:52 2011 +0200
| | 
| |     make configure fail when java is enabled but java/javac/ant are not
| |     detected
| | 
| | M	src/configure
| |   
* | commit 14bccf1a0a4ab124021ca672ed6ac215434c0791
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 26 09:30:17 2011 +0200
| | 
| |     improve check.sh to take arguments with scripts to be tested
| | 
| | M	examples/undocumented/csharp_modular/check.sh
| |   
* | commit b17f07eec8063c851ebe0df570bbdced8a36161c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 26 09:29:56 2011 +0200
| | 
| |     temporarily disable all ignores of operators
| | 
| | M	src/interfaces/modular/modshogun_ignores.i
| |   
* | commit 443fa3e0249a91a6c706f0a010f7aecfca48d039
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 26 08:58:43 2011 +0200
| | 
| |     comment the == ignore line as java_modular chokes on it
| | 
| | M	src/configure
| | M	src/interfaces/modular/modshogun_ignores.i
| |   
* | commit 759fabb9c79f1c095f2731681f854358d1ce6772
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 26 06:42:53 2011 +0200
| | 
| |     add make check-examples-ruby_modular target
| | 
| | M	examples/undocumented/ruby_modular/check.sh
| | M	src/Makefile.template
| |   
* | commit 0a8fceaf101223adcb98fe489a4ac149a10318c6
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 26 06:34:15 2011 +0200
| | 
| |     fix swig java syntax error?
| | 
| | M	src/interfaces/modular/modshogun_ignores.i
| |   
* | commit c31b79516ca797f6ab06a6fe038f3493f15605c0
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 26 03:24:31 2011 +0400
| | 
| |     Improved CDistance parallel implementation
| | 
| | M	src/shogun/distance/Distance.cpp
| | M	src/shogun/distance/Distance.h
| |   
* | commit 420fce15b0150e5af8c65ad494f8ae570d8c899d
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 26 03:23:47 2011 +0400
| | 
| |     Plif fixes
| | 
| | M	src/shogun/structure/Plif.h
| | M	src/shogun/structure/PlifMatrix.cpp
| |   
* | commit e4ca15df91b3e0349892d1310f3d6275cbc924b1
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 25 21:58:45 2011 +0200
| | 
| |     attempt to fix the swig enum include path
| | 
| | M	src/interfaces/java_modular/swig_typemaps.i
| |   
* | commit 1b65716a669bfa26848d3e72f60a07ff0a3ee9c2
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 25 21:48:11 2011 +0200
| | 
| |     improve ruby autodetection and fix fail with modshogun and static build
| | 
| | M	src/configure
| |   
* | commit b378001c930117c4a09b2718d5fc4d3711488e59
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 25 19:45:07 2011 +0200
| | 
| |     add scipy compatibility wrapper for mat_struct
| |     
| |     this should fix the python_modular dynprog example on newer scipy's
| | 
| | M	examples/undocumented/python_modular/structure_dynprog_modular.py
| |   
* | commit 211795471947d2bdbfd4bcb38b70ae254acdacaa
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 25 09:29:21 2011 +0200
| | 
| |     enum.swg has no deps
| | 
| | M	src/.generate_link_dependencies.py
| |   
* | commit e4af932dee24fffee4796dc2b48a22ab92188918
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 25 09:29:12 2011 +0200
| | 
| |     don't check load.lua
| | 
| | M	examples/undocumented/lua_modular/check.sh
| |   
* | commit 1cf46051ebbbe5e936b0ec95da6b72bd9976d871
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 25 09:28:13 2011 +0200
| | 
| |     lua example now erases cruft
| | 
| | M	examples/undocumented/lua_modular/serialization_complex_example.lua
| |   
* | commit 967a7f24380f3a8cf37ff01e1998685d09b11d90
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 25 09:12:07 2011 +0200
| | 
| |     add lua modular check-install target
| | 
| | M	src/Makefile.template
| |     
* |   commit a90530ffa67f55cde25543a87dea02d6f82eb9e3
|\ \  Merge: 7e47856 7cf81e6
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Aug 24 12:23:43 2011 -0700
| | | 
| | |     Merge pull request #310 from frx/streaming_vw
| | |     
| | |     Some VW improvements and python examples
| | |    
| * | commit 7cf81e67f75ef05ce41449cb4ec8acd98f68eaa5
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Wed Aug 24 15:20:00 2011 +0530
| | | 
| | |     Included VwParser more cleanly in IO.i
| | | 
| | | M	src/interfaces/modular/Classifier.i
| | | M	src/interfaces/modular/IO.i
| | | M	src/interfaces/modular/IO_includes.i
| | | M	src/shogun/classifier/vw/VwParser.h
| | | M	src/shogun/io/StreamingVwFile.cpp
| | |    
| * | commit 6be180cb73069f1975c1c36dd56c2c047a2f2347
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Wed Aug 24 07:40:28 2011 +0530
| | | 
| | |     Added VW python example for creating and using cache.
| | | 
| | | A	examples/undocumented/python_modular/streaming_vw_createcache_modular.py
| | |    
| * | commit dcfb2d6501c39c19346b2cb332a826597cdbac62
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Wed Aug 24 07:36:25 2011 +0530
| | | 
| | |     Proper env min/max label updating for cached input in VW.
| | | 
| | | M	src/shogun/classifier/vw/cache/VwCacheReader.h
| | | M	src/shogun/classifier/vw/cache/VwNativeCacheReader.cpp
| | |    
| * | commit 0c3aaf8cf4ed7749a73ead248ad35994af7d3554
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Wed Aug 24 05:54:01 2011 +0530
| |   
| |       Added VW python example, removed doc warning and added a missing sum_feat_sq init.
| |   
| |   A	examples/undocumented/python_modular/streaming_vw_modular.py
| |   M	src/interfaces/modular/Classifier.i
| |   M	src/shogun/classifier/vw/VowpalWabbit.cpp
| |   M	src/shogun/classifier/vw/VowpalWabbit.h
| |   M	src/shogun/classifier/vw/cache/VwNativeCacheReader.h
| |   M	src/shogun/features/StreamingVwFeatures.cpp
| |   
* | commit 7e47856b8d1c4cf0cd717de044e5e975fa8c4c8a
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Aug 24 01:54:59 2011 +0400
| | 
| |     Back ASP to work
| | 
| | M	applications/asp/signal_detectors.py
| |   
* | commit ac212b0a3bedb7e6fa78cb8762eceb4a7b724d7f
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Aug 24 01:53:55 2011 +0400
| | 
| |     Fix for kernelmachine
| | 
| | M	src/shogun/machine/KernelMachine.h
| |   
* | commit 495c1a9d43f0b4837be27be2d5922c4c5f3d543b
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Aug 24 01:39:23 2011 +0400
| | 
| |     Back ARTS to work
| | 
| | M	applications/arts/arts.py
| | M	applications/arts/signal_sensor.py
| |   
* | commit 785447ef394bc84579b207a30dc243623b886bfa
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Aug 24 00:25:14 2011 +0400
| | 
| |     Warnings fixes
| | 
| | M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.h
| | M	src/shogun/classifier/svm/libqp.h
| | M	src/shogun/clustering/GMM.h
| |   
* | commit 2e88999ab05270d2ff6d6bd3dfb8abe75264dc2e
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 23 23:59:32 2011 +0400
| | 
| |     Improved CDistance brief
| | 
| | M	src/shogun/distance/Distance.h
| |   
* | commit 9f349fd4a341dc94de44b9f73f58c1fca10e49ff
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 23 15:30:14 2011 +0400
| | 
| |     Added hashset example, fixed fibonacci heap one
| | 
| | M	examples/undocumented/libshogun/Makefile
| | M	examples/undocumented/libshogun/library_fibonacci_heap.cpp
| | A	examples/undocumented/libshogun/library_hashset.cpp
| |   
* | commit 59a6f41cd560720d71eee9af8a6f4ce57fd32b8e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Aug 23 13:03:01 2011 +0200
| | 
| |     assume make install was called before running lua examples / check.sh
| |     and remove shogun.lua / always use modshogun.Label etc
| | 
| | D	examples/undocumented/lua_modular/MatrixTest.lua
| | D	examples/undocumented/lua_modular/VectorTest.lua
| | M	examples/undocumented/lua_modular/check.sh
| | M	examples/undocumented/lua_modular/classifier_averaged_perceptron_modular.lua
| | M	examples/undocumented/lua_modular/classifier_libsvm_minimal_modular.lua
| | M	examples/undocumented/lua_modular/distance_braycurtis_modular.lua
| | M	examples/undocumented/lua_modular/evaluation_contingencytableevaluation_modular.lua
| | M	examples/undocumented/lua_modular/features_simple_real_modular.lua
| | M	examples/undocumented/lua_modular/features_string_char_modular.lua
| | M	examples/undocumented/lua_modular/kernel_comm_ulong_string_modular.lua
| | M	examples/undocumented/lua_modular/kernel_comm_word_string_modular.lua
| | M	examples/undocumented/lua_modular/kernel_gaussian_modular.lua
| | M	examples/undocumented/lua_modular/kernel_linear_byte_modular.lua
| | M	examples/undocumented/lua_modular/kernel_linear_word_modular.lua
| | M	examples/undocumented/lua_modular/kernel_weighted_degree_string_modular.lua
| | M	examples/undocumented/lua_modular/preprocessor_isomap_modular.lua
| | M	examples/undocumented/lua_modular/regression_krr_modular.lua
| | M	examples/undocumented/lua_modular/serialization_complex_example.lua
| | D	src/interfaces/lua_modular/shogun.lua
| |   
* | commit a5262daf02d733f980285f8ed5849bc9be22ff88
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Aug 23 12:39:12 2011 +0200
| | 
| |     version will be 1.0.0
| | 
| | M	src/NEWS
| |   
* | commit 79b2a0e2c71dafc8135653220e828ba46f7980b7
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Aug 23 12:38:46 2011 +0200
| | 
| |     use pkg-config for lua autodetection and add make install target
| | 
| | M	src/Makefile.template
| | M	src/configure
| |   
* | commit ff913e79f8a2737c5209b1d10a5b51c8ae42ce03
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 23 14:53:09 2011 +0400
| | 
| |     Added test for fibonacci heap
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/library_fibonacci_heap.cpp
| |   
* | commit a3f29339a300a673d45957d25e01f52f9c3609a2
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 23 14:15:12 2011 +0400
| | 
| |     Fix for GCArray
| | 
| | M	src/shogun/lib/GCArray.h
| |   
* | commit bc4d5dede0eccbd3faf6654c3e64e563d6f3eeda
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 23 02:14:30 2011 +0400
| | 
| |     Fixed doc in wavelet kernel
| | 
| | M	src/shogun/kernel/WaveletKernel.h
| |   
* | commit 4f5eb016b4cf275b1af000c151b3aeaccef40b3f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Aug 23 00:10:03 2011 +0200
| | 
| |     update doxyfile to new dir layout
| | 
| | M	doc/Doxyfile
| |   
* | commit aa4de69be965f85a4a67608fadca162339ae6e4b
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 23 02:08:55 2011 +0400
| | 
| |     Warning fixes
| | 
| | M	src/shogun/base/Parameter.h
| | M	src/shogun/base/class_list.h
| | M	src/shogun/classifier/svm/LaRank.h
| | M	src/shogun/classifier/svm/gpm.h
| | M	src/shogun/classifier/svm/libqp.h
| | M	src/shogun/classifier/svm/pr_loqo.h
| | M	src/shogun/distributions/PositionalPWM.h
| | M	src/shogun/io/SerializableAsciiFile.h
| | M	src/shogun/io/SerializableFile.h
| | M	src/shogun/kernel/ScatterKernelNormalizer.h
| | M	src/shogun/kernel/SpectrumRBFKernel.h
| | M	src/shogun/kernel/WeightedDegreeRBFKernel.h
| | M	src/shogun/lib/DataType.h
| | M	src/shogun/lib/GCArray.h
| | M	src/shogun/lib/HashSet.h
| | M	src/shogun/lib/Trie.h
| | M	src/shogun/mathematics/lapack.h
| | M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| | M	src/shogun/preprocessor/KernelPCA.h
| | M	src/shogun/preprocessor/LaplacianEigenmaps.h
| | M	src/shogun/preprocessor/PCA.h
| | M	src/shogun/preprocessor/RandomFourierGaussPreproc.h
| | M	src/shogun/regression/svr/SVRLight.h
| | M	src/shogun/ui/GUIFeatures.h
| | M	src/shogun/ui/GUIKernel.h
| | M	src/shogun/ui/SGInterface.h
| |   
* | commit cc4c0a8150db66e4943ac36e81b98757dbf6a2fa
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 23 02:08:45 2011 +0400
| | 
| |     Updated gitignore
| | 
| | M	.gitignore
| |   
* | commit 1a481483e709e3d1a0010e7c8d5bf8bfdeb4333c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Aug 22 21:53:02 2011 +0200
| | 
| |     fix unicode error
| | 
| | M	src/shogun/preprocessor/MultidimensionalScaling.h
| |   
* | commit 706bca0f20886a435a967167ff0c08477c18a3ee
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Aug 22 23:38:42 2011 +0400
| | 
| |     int32_t const -> const int32_t in dimreductionpreprocessor
| | 
| | M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| |   
* | commit d32fded1a786eb61a924b89f4319ed1b1b8c6671
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Aug 22 21:36:57 2011 +0200
| | 
| |     move library calls in SGObject into .cpp files and un-inline respective
| |     functions
| | 
| | M	src/shogun/base/SGObject.cpp
| | M	src/shogun/base/SGObject.h
| |   
* | commit a57de60ea42475a3fa9ad46187f5cfd639c8a99e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Aug 22 21:10:24 2011 +0200
| | 
| |     fix the mutex/spinlock bugs
| | 
| | M	src/configure
| | M	src/shogun/base/Parallel.h
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| |   
* | commit 4d7f40adf4d696c809d1bd007dac026e72651561
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Aug 22 21:17:36 2011 +0200
| | 
| |     use generic defines for pthread spinlock / mutexes
| | 
| | M	src/shogun/base/SGObject.cpp
| | M	src/shogun/base/SGObject.h
| |   
* | commit e7aed82af8b9cb20c50493c01692314b7f848e36
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Aug 22 21:09:57 2011 +0200
| | 
| |     don't require pry
| | 
| | M	src/interfaces/ruby_modular/modshogun.rb
| |     
* |   commit a715fc7345e206a45dd4f554ad0e7a196c49ccfe
|\ \  Merge: 728d1de 33bac51
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Aug 22 12:36:32 2011 -0700
| | | 
| | |     Merge pull request #308 from frx/streaming_vw
| | |     
| | |     VW application and option to save predictions to a file
| | |    
| * | commit 33bac515ca12011a9c17411a19e2bf350dcc9478
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Aug 22 20:20:31 2011 +0530
| | | 
| | |     Added vw command line utility to applications/
| | | 
| | | A	applications/vw/vw.cpp
| | |    
| * | commit 7e1f3c981f3410e54201446d5c1f3349dacb06ba
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Aug 22 20:11:50 2011 +0530
| | | 
| | |     Potential StreamingFile close function bug fix; VW output_prediction added.
| | | 
| | | M	src/shogun/classifier/vw/VowpalWabbit.cpp
| | | M	src/shogun/classifier/vw/VowpalWabbit.h
| | | M	src/shogun/io/StreamingFile.h
| | | M	src/shogun/io/StreamingVwFile.cpp
| | |    
| * | commit b710961447636801ab01779527d9bdb49a509b18
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sun Aug 21 19:07:08 2011 +0530
| | | 
| | |     Added output_example in VW to save predictions.
| | | 
| | | M	src/shogun/classifier/vw/VowpalWabbit.cpp
| | | M	src/shogun/classifier/vw/VowpalWabbit.h
| | |      
* | |   commit 728d1debc83456344cee03dbdacc2be620501f32
|\ \ \  Merge: a030b01 aafd7fb
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Aug 22 12:36:01 2011 -0700
| | | | 
| | | |     Merge pull request #307 from alesis/gmm
| | | |     
| | | |     Bug fix for GMM.
| | | |     
| * | | commit aafd7fb0c41628fe0b4b3f690e1ba056a6e8853b
| | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | Date:   Mon Aug 22 17:08:15 2011 +0100
| | | | 
| | | |     Changed int's to int32_t
| | | | 
| | | | M	src/shogun/clustering/GMM.cpp
| | | | M	src/shogun/clustering/GMM.h
| | | | M	src/shogun/distributions/Gaussian.cpp
| | | |     
| * | | commit 25572581f053e471d00bcc56dadbcecd25bfb497
| | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | Date:   Mon Aug 22 03:42:49 2011 +0100
| | | | 
| | | |     Bug fix for GMM.
| | | | 
| | | | M	src/shogun/clustering/GMM.cpp
| | | |     
* | | | commit a030b01a95636da704efe0b88fd573a5cfbfe17e
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Mon Aug 22 23:10:29 2011 +0400
| | | | 
| | | |     Added necessary include of config header to preprocessors
| | | | 
| | | | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| | | | M	src/shogun/preprocessor/Isomap.h
| | | | M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| | | | M	src/shogun/preprocessor/KernelPCA.h
| | | | M	src/shogun/preprocessor/LaplacianEigenmaps.h
| | | | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | | | M	src/shogun/preprocessor/MultidimensionalScaling.h
| | | | M	src/shogun/preprocessor/PCA.h
| | | |     
* | | | commit 80149f4fd54fdc5f2b3089e798a3617ffd45700b
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Mon Aug 22 22:47:47 2011 +0400
| | | | 
| | | |     Improved and renamed arpack wrapper, added libshogun arpack example
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | A	examples/undocumented/libshogun/mathematics_arpack.cpp
| | | | M	src/shogun/mathematics/arpack.cpp
| | | | M	src/shogun/mathematics/arpack.h
| | | | M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| | | |     
* | | | commit 876909b8ef40dc42c7beb543cd6a9b4de0dde89f
| |/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|/| |   Date:   Mon Aug 22 21:06:41 2011 +0400
| | |   
| | |       Added AUTO_TARGET_DIM option for dimensionality reduction preprocessor
| | |   
| | |   M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| | |    
* | | commit 904b1a81ed64e0bca09a32a32b521cea47b9e7b0
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Aug 22 19:48:13 2011 +0400
| | | 
| | |     Added kLLE example
| | | 
| | | A	examples/undocumented/python_modular/preprocessor_kernellocallylinearembedding_modular.py
| | |    
* | | commit 0020af834e0356d6bc31914f90ae4360391bdd13
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Aug 22 15:11:19 2011 +0400
| | | 
| | |     Revert "SGObject mutex to generic lock transition"
| | |     
| | |     This reverts commit ed1846562fef047cca1847d16d79dd3ee8092ac2.
| | | 
| | | M	src/shogun/base/SGObject.cpp
| | | M	src/shogun/base/SGObject.h
| | |    
* | | commit dfba7da4b357928f53da71fc2192b6c6ea3906d6
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Aug 22 09:54:41 2011 +0200
| | | 
| | |     fix mutex macro
| | | 
| | | M	src/shogun/base/Parallel.h
| | |    
* | | commit 0964f03c35a761148770c09a339e3bb81785963f
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Aug 22 09:31:53 2011 +0200
| | | 
| | |     it should be NULL in the mutex case
| | | 
| | | M	src/shogun/base/Parallel.h
| | |    
* | | commit ddac14299b350a128f1ec34bc1ad1523276e6c27
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Aug 22 09:22:24 2011 +0200
| | | 
| | |     add option --rubydir to override ruby installation path
| | | 
| | | M	src/Makefile.template
| | | M	src/configure
| | |    
* | | commit 676fcae4fa148bee3562baa106e85c843fddacd3
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Aug 22 06:55:28 2011 +0200
| | | 
| | |     attempt to determine ruby extensions dir and add make install target
| | | 
| | | M	src/Makefile.template
| | | M	src/configure
| | |    
* | | commit 6e02faf18cf65ea3c5f437121814b88695ed74f6
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Aug 22 03:09:41 2011 +0400
| | | 
| | |     Fixes for kLLE
| | | 
| | | M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| | |    
* | | commit 0345166102e7b855a7e8ffed9ac29e22da6b6a50
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Aug 22 01:18:14 2011 +0400
| | | 
| | |     Introduced kernel LLE
| | | 
| | | M	src/interfaces/modular/Preprocessor.i
| | | M	src/interfaces/modular/Preprocessor_includes.i
| | | A	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| | | A	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| | | M	src/shogun/preprocessor/Preprocessor.h
| | |    
* | | commit d7f688d2efef86b48d16be55a8e43d9bad8fa073
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Aug 22 00:02:59 2011 +0400
| | | 
| | |     Fix for LLE
| | | 
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | |    
* | | commit 85ce83d0a70ff64fc02c5ef994a761a9995b1de5
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Aug 21 23:11:01 2011 +0400
| | | 
| | |     LTSA and HLLE fix for pthread generic routines
| | | 
| | | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| | |    
* | | commit ed1846562fef047cca1847d16d79dd3ee8092ac2
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Aug 21 23:10:02 2011 +0400
| | | 
| | |     SGObject mutex to generic lock transition
| | | 
| | | M	src/shogun/base/SGObject.cpp
| | | M	src/shogun/base/SGObject.h
| | |    
* | | commit 385681be66faf41a3c9d1f002d46781dc942b8a9
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Aug 21 23:06:30 2011 +0400
| | | 
| | |     Changed lock routines to pointer usage
| | | 
| | | M	src/shogun/base/Parallel.h
| | |    
* | | commit 15a636a8a29defbe7ebc591d5445fe2e30daad84
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Aug 21 20:06:43 2011 +0200
| | | 
| | |     add spinlock detection
| | | 
| | | M	src/configure
| | |    
* | | commit 15b3364c22e9cc4610c7efe34463c95492d4e24e
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Aug 21 20:06:32 2011 +0200
| | | 
| | |     should be 0 instead of NULL
| | | 
| | | M	src/shogun/base/Parallel.h
| | |    
* | | commit 36776f501c8ec174b7457a00ef297a6543d19019
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Aug 21 19:59:03 2011 +0400
| | | 
| | |     Doc improvements for preprocessors, thread naming fixes
| | | 
| | | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| | | M	src/shogun/preprocessor/Isomap.cpp
| | | M	src/shogun/preprocessor/Isomap.h
| | | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| | | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | | M	src/shogun/preprocessor/MultidimensionalScaling.h
| | |      
* | |   commit 8a410d1a0c3c55c05c25196ab028c3b29d8e2ad1
|\ \ \  Merge: 8631f29 efa826b
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sun Aug 21 08:10:46 2011 -0700
| | | | 
| | | |     Merge pull request #304 from serialhex/master
| | | |     
| | | |     a few additions to the ruby examples & some other stuff...
| | | |     
| * | | commit efa826b2c54431cb640ce2952a218dfe3400566a
| | | | Author: Justin Patera <serialhex@gmail.com>
| | | | Date:   Sat Aug 20 15:19:03 2011 -0400
| | | | 
| | | |     did more work converting files, having some errors and so pushing changes to get errors resolved.
| | | | 
| | | | M	examples/undocumented/ruby_modular/classifier_custom_kernel_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_domainadaptationsvm_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_gmnpsvm_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_gpbtsvm_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_knn_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_larank_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_lda_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_liblinear_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_libsvm_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_libsvmmulticlass_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_libsvmoneclass_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_mpdsvm_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_perceptron_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_subgradientsvm_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_svmlight_batch_linadd_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_svmlight_linear_term_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_svmlight_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_svmlin_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_svmocas_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_svmsgd_modular.rb
| | | | M	examples/undocumented/ruby_modular/clustering_gmm_modular.rb
| | | | M	examples/undocumented/ruby_modular/clustering_hierarchical_modular.rb
| | | | M	examples/undocumented/ruby_modular/clustering_kmeans_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_braycurtis_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_canberra_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_canberraword_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_chebyshew_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_chisquare_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_cosine_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_euclidian_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_geodesic_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_hammingword_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_jensen_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_manhatten_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_manhattenword_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_minkowski_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_normsquared_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_sparseeuclidean_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_tanimoto_modular.rb
| | | | M	examples/undocumented/ruby_modular/distribution_histogram_modular.rb
| | | | M	examples/undocumented/ruby_modular/distribution_hmm_modular.rb
| | | | M	examples/undocumented/ruby_modular/distribution_linearhmm_modular.rb
| | | | M	examples/undocumented/ruby_modular/distribution_ppwm_modular.rb
| | | | M	examples/undocumented/ruby_modular/evaluation_contingencytableevaluation_modular.rb
| | | | M	examples/undocumented/ruby_modular/evaluation_meansquarederror_modular.rb
| | | | M	examples/undocumented/ruby_modular/evaluation_multiclassaccuracy_modular.rb
| | | | M	examples/undocumented/ruby_modular/evaluation_prcevaluation_modular.rb
| | | | M	examples/undocumented/ruby_modular/evaluation_rocevaluation_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_io_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_read_svmlight_format_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_simple_byte_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_simple_longint_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_simple_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_simple_real_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_snp_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_sparse_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_string_char_compressed_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_string_file_char_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_string_file_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_string_hashed_wd_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_string_sliding_window_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_string_ulong_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_string_word_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_anova_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_auc_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_cauchy_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_chi2_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_circular_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_combined_custom_poly_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_combined_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_const_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_custom_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_diag_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_distance_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_distantsegments_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_exponential_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_fisher_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_fixed_degree_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_gaussian_shift_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_histogram_word_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_inversemultiquadric_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_io_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_linear_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_linear_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_local_alignment_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_locality_improved_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_log_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_match_word_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_multiquadric_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_oligo_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_poly_match_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_poly_match_word_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_poly_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_power_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_rationalquadratic_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_salzberg_word_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_sigmoid_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_simple_locality_improved_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_sparse_gaussian_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_sparse_linear_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_sparse_poly_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_spherical_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_spline_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_top_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_tstudent_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_wavelet_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_weighted_comm_word_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_weighted_degree_position_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_weighted_degree_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/library_fisher2x3_modular.rb
| | | | M	examples/undocumented/ruby_modular/mkl_binclass_modular.rb
| | | | M	examples/undocumented/ruby_modular/mkl_multiclass_modular.rb
| | | | M	examples/undocumented/ruby_modular/modelselection_grid_search_linear_modular.rb
| | | | M	examples/undocumented/ruby_modular/modelselection_parameter_tree_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_hessianlocallylinearembedding_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_isomap_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_kernelpca_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_laplacianeigenmaps_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_locallylinearembedding_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_localtangentspacealignment_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_logplusone_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_multidimensionalscaling_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_normone_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_pca_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_prunevarsubmean_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_randomfouriergausspreproc_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_sortulongstring_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_sortwordstring_modular.rb
| | | | M	examples/undocumented/ruby_modular/regression_krr_modular.rb
| | | | M	examples/undocumented/ruby_modular/regression_libsvr_modular.rb
| | | | M	examples/undocumented/ruby_modular/regression_svrlight_modular.rb
| | | | M	examples/undocumented/ruby_modular/serialization_complex_example.rb
| | | | M	examples/undocumented/ruby_modular/serialization_matrix_modular.rb
| | | | M	examples/undocumented/ruby_modular/serialization_svmlight_modular.rb
| | | | M	examples/undocumented/ruby_modular/structure_dynprog_modular.rb
| | | | M	examples/undocumented/ruby_modular/tests_check_commwordkernel_memleak_modular.rb
| | | |     
| * | | commit 9e4fe99e190e9c676dbf6af1c51a8e2c700bdf16
| | | | Author: Justin Patera <serialhex@gmail.com>
| | | | Date:   Fri Aug 19 14:00:44 2011 -0400
| | | | 
| | | |     added a fixer program to make life easier for me && modified the modshogun.rb file
| | | | 
| | | | A	examples/undocumented/ruby_modular/fixer_proggie
| | | | M	src/interfaces/ruby_modular/modshogun.rb
| | | |     
| * | | commit 0f8b2ffc20f757baa2bfb4a4ffea645ac7571e36
| | | | Author: Justin Patera <serialhex@gmail.com>
| | | | Date:   Thu Aug 18 19:16:15 2011 -0400
| | | | 
| | | |     added a 'modshogun.rb' file to do some (ok, eventually a lot) of the ruby start-up stuff, like requiring 'narray' and such.  also completed more examples.  more examples to come!!
| | | | 
| | | | M	examples/undocumented/ruby_modular/classifier_averaged_perceptron_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_gaussiannaivebayes_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_string_char_modular.rb
| | | | M	examples/undocumented/ruby_modular/load.rb
| | | | A	src/interfaces/ruby_modular/modshogun.rb
| | | |     
| * | | commit bbde5a93afba6969cc04be2815c00208dc4c487f
|/ / /  Author: Justin Patera <serialhex@gmail.com>
| | |   Date:   Sun Aug 14 16:31:59 2011 -0400
| | |   
| | |       syncing my computers, completed more examples
| | |   
| | |   M	examples/undocumented/ruby_modular/MatrixTest.rb
| | |   M	examples/undocumented/ruby_modular/classifier_custom_kernel_modular.rb
| | |   M	examples/undocumented/ruby_modular/classifier_gaussiannaivebayes_modular.rb
| | |   M	examples/undocumented/ruby_modular/features_string_char_modular.rb
| | |   M	examples/undocumented/ruby_modular/features_string_sliding_window_modular.rb
| | |   M	examples/undocumented/ruby_modular/kernel_linear_byte_modular.rb
| | |    
* | | commit 8631f29e158489cd7c3b7acc049c7d14ef2c228e
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Aug 21 16:55:24 2011 +0400
| | | 
| | |     Added %newobject for preprocessor routines creating new objects
| | | 
| | | M	src/interfaces/modular/Preprocessor.i
| | |    
* | | commit ed016f446b618e9230cf2b431f8a6c84da9401a3
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Aug 21 07:14:51 2011 +0200
| | | 
| | |     improve robustness in ruby detection
| | | 
| | | M	src/configure
| | |      
* | |   commit f14ecfb704cc38b74dd4e56028a14d3acaa4e092
|\ \ \  Merge: 23edad1 e030a9e
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Sat Aug 20 21:44:06 2011 -0700
| | |   
| | |       Merge pull request #306 from alesis/gmm
| | |       
| | |       Few documentation additions
| | |    
| * | commit e030a9e1f07f3695ca60b26b32e68cc94c614cf5
| | | Author: Alesis Novik <alesisnov@gmail.com>
| | | Date:   Sun Aug 21 01:23:39 2011 +0100
| | | 
| | |     minor fix
| | | 
| | | M	examples/undocumented/python_modular/graphical/em_1d_gmm.py
| | | M	examples/undocumented/python_modular/graphical/em_2d_gmm.py
| | | M	examples/undocumented/python_modular/graphical/smem_1d_gmm.py
| | | M	examples/undocumented/python_modular/graphical/smem_2d_gmm.py
| | |    
| * | commit 30231e79e754ae2daa2db46e7b9d475e3c640d9d
| | | Author: Alesis Novik <alesisnov@gmail.com>
| | | Date:   Sun Aug 21 01:16:30 2011 +0100
| | | 
| | |     Additional Gaussian documentation.
| | | 
| | | M	src/shogun/distributions/Gaussian.h
| | |    
| * | commit a913153e6c2c4ee9d5f176db4950c56b2ded5d5c
| | | Author: Alesis Novik <alesisnov@gmail.com>
| | | Date:   Sun Aug 21 01:09:57 2011 +0100
| | | 
| | |     Documented GMM examples
| | | 
| | | A	examples/descriptions/modular/clustering_gmm.txt
| | | M	examples/undocumented/python_modular/clustering_gmm_modular.py
| | | M	examples/undocumented/python_modular/graphical/em_1d_gmm.py
| | | M	examples/undocumented/python_modular/graphical/em_2d_gmm.py
| | | M	examples/undocumented/python_modular/graphical/smem_1d_gmm.py
| | | M	examples/undocumented/python_modular/graphical/smem_2d_gmm.py
| | |      
* | |   commit 23edad123c29d380d03b0f093b3e6bb6bd15e9cd
|\ \ \  Merge: 0bf8b18 33ba646
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| |   Date:   Sat Aug 20 21:43:04 2011 -0700
| | |   
| | |       Merge pull request #305 from frx/streaming_vw
| | |       
| | |       Added exact adaptive norm to VW and corrected train declaration.
| | |    
| * | commit 33ba64662873a7de314e90093e1b333a4a044973
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Sun Aug 21 04:34:04 2011 +0530
| |   
| |       Added exact adaptive norm to VW and corrected train declaration.
| |   
| |   M	src/shogun/classifier/vw/VowpalWabbit.cpp
| |   M	src/shogun/classifier/vw/VowpalWabbit.h
| |   M	src/shogun/classifier/vw/VwEnvironment.cpp
| |   M	src/shogun/classifier/vw/VwEnvironment.h
| |   M	src/shogun/classifier/vw/VwRegressor.h
| |   
* | commit 0bf8b18b176d7ac352f220286d9a45ba1f5b0ec9
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 21 02:47:35 2011 +0400
| | 
| |     Added apply_to_string_features method to kPCA
| | 
| | M	src/shogun/preprocessor/KernelPCA.cpp
| | M	src/shogun/preprocessor/KernelPCA.h
| |   
* | commit 8d8cfd85d931a5b5184e79e03be677a8606a6469
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 21 02:47:12 2011 +0400
| | 
| |     Fixed m_eigenvalues handling in MDS
| | 
| | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| | M	src/shogun/preprocessor/MultidimensionalScaling.h
| |   
* | commit e8bff92ca0d630234c07f734606485f6c0a28eb7
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Aug 21 00:00:20 2011 +0200
| | 
| |     don't call library function in header file Parallel.h -> move it to .cpp
| | 
| | M	src/shogun/base/Parallel.cpp
| | M	src/shogun/base/Parallel.h
| |   
* | commit a7f397a6eff817ff3e5a69dd4bc53d888d061396
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 21 01:41:16 2011 +0400
| | 
| |     Fixed swissroll example
| | 
| | M	examples/undocumented/python_modular/graphical/swissroll.py
| |   
* | commit 2fec2bb78a6d9b91228b89608b0c3f1da76a32bc
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 21 01:40:45 2011 +0400
| | 
| |     Usage of PTHREAD_LOCK in LTSA and HLLE
| | 
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| |   
* | commit 7bcf36217629bb87ef925ac85299a529da953fb4
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 21 01:40:24 2011 +0400
| | 
| |     Changed thread checking flag in LLE
| | 
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| |   
* | commit 79aa66b056af3d33fdb8cc3d162b83378086cc1d
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 21 01:39:18 2011 +0400
| | 
| |     Added macro definition of PTHREAD_LOCK_T with priority to spinlock if available
| | 
| | M	src/shogun/base/Parallel.h
| |   
* | commit 87ccc1077aeda0ac59f3cc69c38b26629e2a1cd9
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 21 01:38:37 2011 +0400
| | 
| |     Changed thread checking flags in Isomap and MDS
| | 
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| |   
* | commit f73e42aed8c963daabb8fc43c9edc8abd20c2245
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 21 01:36:25 2011 +0400
| | 
| |     Added HAVE_PTHREAD flag
| | 
| | M	src/configure
| |   
* | commit ba59f81b2b3d0d99423bba3021bf9a8a72446726
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 21 00:01:05 2011 +0400
| | 
| |     Updated dimension reduction examples
| | 
| | M	examples/undocumented/python_modular/graphical/hemisphere.py
| | M	examples/undocumented/python_modular/graphical/swissroll.py
| |   
* | commit 37c5df65c572c6adef6c975ee3bd5577ab273cbc
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 21 00:00:19 2011 +0400
| | 
| |     Got rid of custom distance usage in Isomap and MDS
| | 
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/Isomap.h
| | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| | M	src/shogun/preprocessor/MultidimensionalScaling.h
| |   
* | commit 226853f9e0a5f1074c5266c219c5bb16a8fb8b7d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Aug 20 19:57:32 2011 +0200
| | 
| |     fail when java/ruby/lua are enabled but not found
| | 
| | M	src/configure
| |   
* | commit 569d85e895f8f79b477472f8f0e0e361114a1cef
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 20 14:46:18 2011 +0400
| | 
| |     Yet another warnings removal
| | 
| | M	src/shogun/base/SGObject.h
| | M	src/shogun/base/class_list.h
| | M	src/shogun/base/init.h
| | M	src/shogun/distance/Distance.h
| | M	src/shogun/evaluation/ContingencyTableEvaluation.h
| | M	src/shogun/io/SGIO.h
| | M	src/shogun/kernel/BesselKernel.h
| | M	src/shogun/kernel/Kernel.h
| | M	src/shogun/kernel/WaveletKernel.h
| | M	src/shogun/kernel/WeightedDegreeStringKernel.h
| | M	src/shogun/lib/Compressor.h
| | M	src/shogun/lib/DataType.h
| | M	src/shogun/modelselection/ModelSelectionParameters.h
| | M	src/shogun/regression/Regression.h
| | M	src/shogun/ui/GUIClassifier.h
| | M	src/shogun/ui/GUIHMM.h
| | M	src/shogun/ui/GUIMath.h
| | M	src/shogun/ui/GUITime.h
| | M	src/shogun/ui/SGInterface.h
| |   
* | commit 2ca6531d7c12e71900b769b61a58083113135ce6
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 20 14:06:14 2011 +0400
| | 
| |     Updated gitignore
| | 
| | M	.gitignore
| |   
* | commit 7d3b6136487dd2df82c41e6d679016e2b97613ad
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Aug 20 07:22:28 2011 +0200
| | 
| |     improve mono tests
| | 
| | M	examples/undocumented/csharp_modular/check.sh
| |   
* | commit 57c1c84d9d86fad723b51bdd0b5a00fb2138b890
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Aug 20 07:16:15 2011 +0200
| | 
| |     improve java's check.sh
| | 
| | M	examples/undocumented/java_modular/check.sh
| |   
* | commit f192c4480d33b501d7adcb2aa972a83f5dce63f1
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 20 01:16:33 2011 +0400
| | 
| |     Warning fixes
| | 
| | M	src/shogun/base/ParameterMap.h
| | M	src/shogun/classifier/KNN.h
| | M	src/shogun/classifier/mkl/MKLMultiClass.h
| | M	src/shogun/classifier/svm/GMNPSVM.h
| | M	src/shogun/classifier/svm/libqp.h
| | M	src/shogun/io/SerializableAsciiReader00.h
| | M	src/shogun/kernel/BesselKernel.h
| | M	src/shogun/kernel/SpectrumMismatchRBFKernel.h
| | M	src/shogun/kernel/WaveletKernel.h
| | M	src/shogun/lib/DataType.h
| | M	src/shogun/ui/GUIClassifier.h
| | M	src/shogun/ui/GUIDistance.h
| | M	src/shogun/ui/GUILabels.h
| | M	src/shogun/ui/GUIPluginEstimate.h
| | M	src/shogun/ui/GUIPreprocessor.h
| | M	src/shogun/ui/GUIStructure.h
| | M	src/shogun/ui/SyntaxHighLight.h
| |   
* | commit ae7dc3eff77bd427665fb9ce528b038945d85944
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 20 01:04:26 2011 +0400
| | 
| |     Updated kPCA java modular example
| | 
| | A	examples/undocumented/java_modular/preprocessor_kernelpca_modular.java
| | D	examples/undocumented/java_modular/preprocessor_kernelpcacut_modular.java
| |   
* | commit 92a2edbe1cd91800519c6364d607139d5e099038
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 20 01:01:37 2011 +0400
| | 
| |     Updated kPCA ruby example
| | 
| | A	examples/undocumented/ruby_modular/preprocessor_kernelpca_modular.rb
| | D	examples/undocumented/ruby_modular/preprocessor_kernelpcacut_modular.rb
| |   
* | commit d88e533d8c34392ae9a4f62df3acb7a3e070fc4a
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 20 00:59:55 2011 +0400
| | 
| |     Updated kPCA python modular example
| | 
| | A	examples/undocumented/python_modular/preprocessor_kernelpca_modular.py
| | D	examples/undocumented/python_modular/preprocessor_kernelpcacut_modular.py
| |   
* | commit 16c77fc98f9c370e1e44b120c7b4129a5d3477d8
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 20 00:55:42 2011 +0400
| | 
| |     Made PCA preprocessor inherited from DimensionReductionPreprocessor, renamed KernelPCACut to KernelPCA
| | 
| | M	src/interfaces/modular/Preprocessor.i
| | M	src/interfaces/modular/Preprocessor_includes.i
| | A	src/shogun/preprocessor/KernelPCA.cpp
| | A	src/shogun/preprocessor/KernelPCA.h
| | D	src/shogun/preprocessor/KernelPCACut.cpp
| | D	src/shogun/preprocessor/KernelPCACut.h
| | M	src/shogun/preprocessor/PCA.cpp
| | M	src/shogun/preprocessor/PCA.h
| | M	src/shogun/preprocessor/Preprocessor.h
| |   
* | commit aa7f5949443a7a25d7a67e59765dc26d340abfb6
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 21:46:43 2011 +0200
| | 
| |     document BaumWelchViterbiType
| | 
| | M	src/shogun/distributions/HMM.h
| |   
* | commit 618179a6ff2d5a8dbf81b0f538650d536319e5bc
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 21:45:59 2011 +0200
| | 
| |     remove extern SGIO statement
| | 
| | M	src/shogun/base/DynArray.h
| |   
* | commit b6a1b121f654e9d7083b80530cfd96eee7c625c5
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 21:45:23 2011 +0200
| | 
| |     fix type definitions and properly document types up to 1024bit integers
| | 
| | M	src/shogun/lib/DynInt.h
| |   
* | commit 24610e5b7a80c57d8600cb76d7880f379de319bd
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 21:36:06 2011 +0200
| | 
| |     fix documentation in SNPstringkernel
| | 
| | M	src/shogun/kernel/SNPStringKernel.h
| |   
* | commit d0c6dda50d7f0444b04295af0bd8b5e553b6a2bd
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 21:32:58 2011 +0200
| | 
| |     Fix documentation in structure.
| | 
| | M	src/shogun/structure/DynProg.h
| | M	src/shogun/structure/Plif.cpp
| | M	src/shogun/structure/Plif.h
| |   
* | commit df7739a3b05aa20e4fa927589183c45e596772fa
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 20:15:16 2011 +0200
| | 
| |     fix ppwm example and disable crashing parts in structure_*
| | 
| | M	examples/undocumented/python_modular/distribution_ppwm_modular.py
| | M	examples/undocumented/python_modular/structure_dynprog_modular.py
| |   
* | commit 482439850cf81d2e18992939243af9734f069de6
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 19 21:50:18 2011 +0400
| | 
| |     Fixed spinlock inits
| | 
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| |   
* | commit 77c1f2b5b501f2ae3699682fc25451502c875b74
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 19 19:52:43 2011 +0400
| | 
| |     Made 100 warnings left
| | 
| | M	src/shogun/evaluation/CrossValidation.h
| | M	src/shogun/io/SerializableFile.h
| | M	src/shogun/ui/GUIFeatures.h
| |   
* | commit 92c21ec8abae5041c9bfbff47dd8667dc59de1ef
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 19 15:58:04 2011 +0400
| | 
| |     Spinlock instead of mutex
| | 
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| |   
* | commit c0f76ee2b59abab10179989b17fce3fb8a3a051b
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 19 15:55:08 2011 +0400
| | 
| |     Made neighbor search parallel in LocallyLinearEmbedding
| | 
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| |   
* | commit 936bcdfde7c8ef95a69a35efb95a4f683e28f47e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 13:30:19 2011 +0200
| | 
| |     fix a few warnings in DynProg
| | 
| | M	src/shogun/structure/DynProg.h
| |   
* | commit a4e2ac16a689104a79db5f0861beb6118fe71ba1
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 12:19:40 2011 +0200
| | 
| |     forgot escaping args
| | 
| | M	examples/undocumented/libshogun/check.sh
| |   
* | commit 4d140a344b13f426b3c77d618a4fd3e37b3b9cd4
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 12:06:42 2011 +0200
| | 
| |     fix check.sh and add return 0 to examples missing the statement
| | 
| | M	examples/undocumented/libshogun/check.sh
| | M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| | M	examples/undocumented/libshogun/library_dyn_int.cpp
| | M	examples/undocumented/libshogun/streaming_onlinesvmsgd.cpp
| | M	examples/undocumented/libshogun/streaming_vowpalwabbit.cpp
| | M	examples/undocumented/libshogun/streaming_vwfeatures.cpp
| |   
* | commit 316fcc9134945c6d50b9e88cceb758b77701e519
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 11:13:17 2011 +0200
| | 
| |     add escaped quotes to libshogun check
| | 
| | M	examples/undocumented/libshogun/check.sh
| |   
* | commit 201a95810f238f055ea08afaad11e33e7a13c370
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 10:46:43 2011 +0200
| | 
| |     add check.sh script to libshogun to follow the same testing principle
| |     and really exit 1 on failure
| | 
| | M	examples/undocumented/cmdline_static/check.sh
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/check.sh
| | M	examples/undocumented/lua_modular/check.sh
| | M	examples/undocumented/matlab_and_octave/check.sh
| | M	examples/undocumented/octave_modular/check.sh
| | M	examples/undocumented/python_modular/check.sh
| | M	examples/undocumented/python_static/check.sh
| | M	examples/undocumented/r_modular/check.sh
| | M	examples/undocumented/r_static/check.sh
| | M	examples/undocumented/ruby_modular/check.sh
| | M	src/Makefile.template
| |   
* | commit 675a2a7444813762fabb8a1d444ae4bd8f461cdd
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 10:16:10 2011 +0200
| | 
| |     fix r static doc install path
| | 
| | M	src/Makefile.template
| |   
* | commit dd04e8dce7e1d84cf2cfb5983ef7022d8b8c068f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 10:15:46 2011 +0200
| | 
| |     exit 0 upon examples running all OK
| | 
| | M	examples/undocumented/cmdline_static/check.sh
| | M	examples/undocumented/lua_modular/check.sh
| | M	examples/undocumented/matlab_and_octave/check.sh
| | M	examples/undocumented/octave_modular/check.sh
| | M	examples/undocumented/python_modular/check.sh
| | M	examples/undocumented/python_static/check.sh
| | M	examples/undocumented/r_modular/check.sh
| | M	examples/undocumented/r_static/check.sh
| | M	examples/undocumented/ruby_modular/check.sh
| |   
* | commit 9475428ad69fed8387f4c359b4daa48a3e688f3a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 09:54:42 2011 +0200
| | 
| |     collect all errors in error.log and show them at the end in detail
| | 
| | M	examples/undocumented/cmdline_static/check.sh
| | M	examples/undocumented/lua_modular/check.sh
| | M	examples/undocumented/matlab_and_octave/check.sh
| | M	examples/undocumented/octave_modular/check.sh
| | M	examples/undocumented/python_modular/check.sh
| | M	examples/undocumented/python_static/check.sh
| | M	examples/undocumented/r_modular/check.sh
| | M	examples/undocumented/r_static/check.sh
| | M	examples/undocumented/ruby_modular/check.sh
| |   
* | commit 90c20fe79d819a922b43b6cc6cf18574a61dfa3e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 07:09:16 2011 +0200
| | 
| |     remove unsupported example
| | 
| | D	examples/undocumented/python_static/kernel_linearbyte.py
| |   
* | commit 46db854de281cccbb263dc03ab81dbbe81b24d45
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 19 04:34:02 2011 +0400
| | 
| |     Efficient matrix centering instead of crappy dgemms for MDS
| | 
| | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| |   
* | commit 5ed8a9a7a14ba20620a5836682aac81c0a60e026
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 00:55:51 2011 +0200
| | 
| |     don't run for loop in a sub shell
| | 
| | M	examples/undocumented/python_static/check.sh
| |   
* | commit 5a0fd39c670b8a13ef907812e744b10e95fcda5e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 00:14:33 2011 +0200
| | 
| |     exit 1 on error at the end of running check.sh
| | 
| | M	examples/undocumented/cmdline_static/check.sh
| | M	examples/undocumented/lua_modular/check.sh
| | M	examples/undocumented/matlab_and_octave/check.sh
| | M	examples/undocumented/octave_modular/check.sh
| | M	examples/undocumented/python_modular/check.sh
| | M	examples/undocumented/python_static/check.sh
| | M	examples/undocumented/r_modular/check.sh
| | M	examples/undocumented/r_static/check.sh
| | M	examples/undocumented/ruby_modular/check.sh
| |   
* | commit 615d2a2971937134506c051c64fd6b46836e25f4
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 18 23:47:22 2011 +0200
| | 
| |     add flag LIBS_ADD to add libs in addition to LIBS
| | 
| | M	examples/undocumented/libshogun/Makefile
| |   
* | commit f5254def209db1bcba5df0bb8af4a9b7489faa4f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 18 23:36:36 2011 +0200
| | 
| |     add -llapack in examples
| | 
| | M	examples/undocumented/libshogun/Makefile
| |   
* | commit 33a399d5850aff2c05de61bb043fb95764a624f7
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 18 22:55:52 2011 +0200
| | 
| |     create documented examples for all supported languages and move the
| |     dimreduct examples one dir up
| | 
| | M	examples/generate_documented.sh
| | D	examples/undocumented/python_modular/graphical/dimreduct/hemisphere.py
| | D	examples/undocumented/python_modular/graphical/dimreduct/swissroll.py
| | A	examples/undocumented/python_modular/graphical/hemisphere.py
| | A	examples/undocumented/python_modular/graphical/swissroll.py
| |     
* |   commit 2ac0b0f70c03b0b70e13ac0b3ad63b7f4822f209
|\ \  Merge: db25278 1807bc2
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Fri Aug 19 00:45:43 2011 +0400
| | | 
| | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | |      
| * |   commit 1807bc2fd4a1d22d3e23fde38d6ba101ef23da6f
| |\ \  Merge: 3747c4d b0eb823
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Aug 18 22:39:08 2011 +0200
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |     
| * | | commit 3747c4d2196fbc29f48c1466f33fb9144542d41b
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Aug 18 22:37:50 2011 +0200
| | | | 
| | | |     ignore __STDC_FORMAT_MACROS in modular interfaces
| | | | 
| | | | M	src/interfaces/modular/modshogun_ignores.i
| | | |     
* | | | commit db25278f1ab734e07b2f838b728c50c7e10ada0e
| |/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|/| |   Date:   Fri Aug 19 00:45:01 2011 +0400
| | |   
| | |       Update MDS thread doc
| | |   
| | |   M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| | |    
* | | commit b0eb823054a460c92f255cf0fd4a2191e35a64fd
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Fri Aug 19 00:27:28 2011 +0400
| | | 
| | |     Warning removal
| | | 
| | | M	src/shogun/evaluation/CrossValidation.h
| | | M	src/shogun/evaluation/SplittingStrategy.h
| | | M	src/shogun/features/LBPPyrDotFeatures.h
| | | M	src/shogun/io/SerializableHdf5File.cpp
| | | M	src/shogun/io/SerializableHdf5Reader00.cpp
| | | M	src/shogun/kernel/DiceKernelNormalizer.h
| | | M	src/shogun/kernel/LinearKernel.h
| | | M	src/shogun/kernel/MultitaskKernelMaskPairNormalizer.h
| | | M	src/shogun/kernel/MultitaskKernelTreeNormalizer.h
| | | M	src/shogun/kernel/RegulatoryModulesStringKernel.h
| | | M	src/shogun/kernel/SparseSpatialSampleStringKernel.h
| | | M	src/shogun/kernel/SpectrumRBFKernel.h
| | | M	src/shogun/modelselection/ParameterCombination.h
| | | M	src/shogun/structure/PlifMatrix.h
| | | M	src/shogun/ui/GUIClassifier.h
| | | M	src/shogun/ui/SGInterface.h
| | |    
* | | commit a3b620347a85f3a23121cfbe6005bd86a39b61b3
|/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |   Date:   Fri Aug 19 00:10:34 2011 +0400
| |   
| |       Updated news and contributions
| |   
| |   M	src/CONTRIBUTIONS
| |   M	src/NEWS
| |     
* |   commit 12b8f955acd01715e409e6e1b6f9ba543ec32fea
|\ \  Merge: bd8f328 09fc587
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Aug 18 10:55:12 2011 -0700
| | | 
| | |     Merge pull request #303 from karlnapf/master
| | |     
| | |     serialization of SGMatrix/SGVector
| | |    
| * | commit 09fc58738e519b3745a604b993526ce3b8c1c5ff
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 19:07:07 2011 +0200
| | | 
| | |     removed example from makefile due to build errors
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | |    
| * | commit 2ef9ff1403c527e21ccfa7ca2f38f8064127a6b7
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 18:55:46 2011 +0200
| | | 
| | |     added include paths for serialization example
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | |    
| * | commit 00db8238c2505d955d252c907faa3544ba413dfd
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 18:53:50 2011 +0200
| | | 
| | |     applieed container type changes to all serializable files
| | | 
| | | M	src/shogun/io/SerializableHdf5File.cpp
| | | M	src/shogun/io/SerializableHdf5Reader00.cpp
| | | M	src/shogun/io/SerializableJsonFile.cpp
| | | M	src/shogun/io/SerializableJsonReader00.cpp
| | | M	src/shogun/io/SerializableXmlFile.cpp
| | | M	src/shogun/io/SerializableXmlReader00.cpp
| | |    
| * | commit ea55bc47b9390227fc199d6d36594732233fdc5c
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 18:53:15 2011 +0200
| | | 
| | |     removed old serialization test and replaced by more complex one
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | | D	examples/undocumented/libshogun/serialization_ascii.cpp
| | | A	examples/undocumented/libshogun/serialization_vector_matrix.cpp
| | |    
| * | commit 5866167769abec1e0de66c667d01ab50f6cc36c2
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 16:26:34 2011 +0200
| | | 
| | |     made type enums fixed
| | | 
| | | M	src/shogun/lib/DataType.h
| | |    
| * | commit dd907810dae569d416dac47062a601fb690b2a33
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Thu Aug 18 13:37:34 2011 +0200
| |   
| |       put the new container types at the end to preserve original order
| |   
| |   M	src/shogun/lib/DataType.h
| |   
* | commit bd8f328f711bf20bd7b313ec91fe9de5f556842e
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Aug 18 17:35:21 2011 +0400
| | 
| |     Added SGREFing while applying to feature matrices in dimensionality reduction preprocessors, fixed wrong already owned matrices return in MDS and Isomap
| | 
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| |   
* | commit bd45c6ca83b1ab9b8f2f1ed2cef13beaceebb194
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Aug 18 15:27:08 2011 +0400
| | 
| |     More UI warnings removal
| | 
| | M	src/shogun/mathematics/Loss.h
| | M	src/shogun/ui/GUIClassifier.h
| | M	src/shogun/ui/GUIDistance.h
| | M	src/shogun/ui/GUIFeatures.h
| | M	src/shogun/ui/GUIPluginEstimate.h
| | M	src/shogun/ui/GUIStructure.h
| |     
* |   commit 9f7740af9bbd28bf0a90a16f273029755815538a
|\ \  Merge: 560d6cd 9474929
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Aug 18 03:59:31 2011 -0700
| | | 
| | |     Merge pull request #302 from karlnapf/master
| | |     
| | |     working SGVector serialization
| | |    
| * | commit 94749298c576c4b63ce33fb2c1b696a9ad04dd4a
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 12:56:40 2011 +0200
| | | 
| | |     added forgotten switch cases for the CT_SGMATRIX container type
| | | 
| | | M	src/shogun/base/Parameter.cpp
| | |    
| * | commit 6ffea7ba25d4e8bd7a8d90ac11dbd1830662a8f5
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 12:44:39 2011 +0200
| | | 
| | |     made matrix free methods virtual
| | | 
| | | M	src/shogun/lib/DataType.h
| | |    
| * | commit c3e2390aedfdb42a2e14fcd6aa42720b619de0bc
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 12:37:38 2011 +0200
| | | 
| | |     introduced new container type CT_SGMATRIX for SGMatrix (de)serialization
| | | 
| | | M	src/shogun/base/Parameter.cpp
| | | M	src/shogun/io/SerializableAsciiFile.cpp
| | | M	src/shogun/io/SerializableAsciiReader00.cpp
| | | M	src/shogun/lib/DataType.cpp
| | | M	src/shogun/lib/DataType.h
| | |    
| * | commit d3c1cdb40b008b335fc1040d3973edc83a0df53c
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 12:15:59 2011 +0200
| | | 
| | |     uncommented SGCachedVector
| | | 
| | | M	src/shogun/lib/DataType.h
| | |    
| * | commit 40ae0c1ef81a04f38dd9614fe56f35e6db39715e
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 12:06:50 2011 +0200
| | | 
| | |     introduced new container type CT_SGVECTOR which is now used for SGVector (de)serialization
| | | 
| | | M	src/shogun/lib/DataType.cpp
| | | M	src/shogun/lib/DataType.h
| | |    
| * | commit 9eeee722e235c9738ae0b56559d250ca0eb1d1cc
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 12:06:18 2011 +0200
| | | 
| | |     introduced new container type CT_SGVECTOR which is now used for SGVector (de)serialization
| | | 
| | | M	src/shogun/io/SerializableAsciiFile.cpp
| | | M	src/shogun/io/SerializableAsciiReader00.cpp
| | |    
| * | commit 1994af6aef11837e3a567cec656dce4dc9367aba
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 12:05:35 2011 +0200
| | | 
| | |     removed unnecessary const
| | | 
| | | M	src/shogun/base/Version.h
| | | M	src/shogun/features/Features.h
| | | M	src/shogun/features/Labels.h
| | |    
| * | commit f059083741272ad277cdd527935fca4b87c919e0
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 12:05:14 2011 +0200
| | | 
| | |     introduced new container type CT_SGVECTOR which is now used for SGVector (de)serialization
| | | 
| | | M	src/shogun/base/Parameter.cpp
| | |    
| * | commit f26aed8a98861a6e346c864d234789769ea1d6ff
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Wed Aug 17 12:06:48 2011 +0200
| |   
| |       Revert "temporary workaround for crasher in serialization"
| |       
| |       This reverts commit 49ff85135f6e96fe2527846e316f85f02f6980ca.
| |   
| |   M	src/shogun/lib/DataType.h
| |   
* | commit 560d6cd09049be48a410bea21f0c5107c972f1c2
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Aug 18 12:46:20 2011 +0400
| | 
| |     Various UI warnings fixes
| | 
| | M	src/shogun/ui/GUIHMM.h
| | M	src/shogun/ui/GUIKernel.h
| | M	src/shogun/ui/GUILabels.h
| | M	src/shogun/ui/GUIMath.h
| | M	src/shogun/ui/GUIPreprocessor.h
| | M	src/shogun/ui/GUIStructure.h
| | M	src/shogun/ui/GUITime.h
| | M	src/shogun/ui/SGInterface.h
| |     
* |   commit 2a787b970d9ceeedff877d04e18f2b2979a196c8
|\ \  Merge: 96da4ad 462bf99
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Aug 17 23:32:28 2011 +0200
| | | 
| | |     Merge branch 'master' of ssh://shogun-toolbox.org/shogun
| | |    
| * | commit 462bf999b4e833c9d594ec7bd379cc0f5cf7c99a
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu Aug 18 01:19:37 2011 +0400
| | | 
| | |     NEWS update
| | | 
| | | M	src/NEWS
| | |    
* | | commit 96da4adbfe7a8e866b48aeff17343bb270a3fe22
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Wed Aug 17 23:30:49 2011 +0200
| |   
| |       fix compile errors detected by nightly_all
| |   
| |   M	src/interfaces/cmdline_static/CmdLineInterface.h
| |   M	src/shogun/base/DynArray.h
| |   
* | commit 636c1faece07f78356d41f4999ad5775765fd0bb
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 17 23:05:35 2011 +0200
| | 
| |     fix warning in logsum_array
| | 
| | M	src/shogun/mathematics/Math.h
| |   
* | commit 3d3eae40ec170cba6297dc9a9deca0b1f8c7779f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 17 23:05:12 2011 +0200
| | 
| |     mention that we support matlab 2011a now too
| | 
| | M	src/NEWS
| |   
* | commit 36676f3321c5fc88b88c4aa5f300a24237fd09c0
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Aug 18 00:51:49 2011 +0400
| | 
| |     SGInterface doxygen warning removal
| | 
| | M	src/shogun/ui/SGInterface.h
| |   
* | commit a73d0cba249d1f5e98c35f4e64ad1b0db7123bb0
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 17 22:01:27 2011 +0200
| | 
| |     transition further parts to SG* datatypes in structure/
| | 
| | M	src/shogun/structure/DynProg.cpp
| | M	src/shogun/structure/DynProg.h
| | M	src/shogun/structure/PlifMatrix.cpp
| | M	src/shogun/structure/PlifMatrix.h
| | M	src/shogun/ui/SGInterface.cpp
| |     
* |   commit b477e8dac7713349d2ad26ab2e7ab41153e5dc8f
|\ \  Merge: eb4c839 f851c74
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Aug 17 11:40:29 2011 -0700
| | | 
| | |     Merge pull request #301 from frx/streaming_vw
| | |     
| | |     VW in modular interfaces
| | |    
| * | commit f851c74af558c4f8c78a58d8f643070a401b2391
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Thu Aug 18 00:05:22 2011 +0530
| | | 
| | |     Readded StreamingFileFromFeatures to modular.
| | | 
| | | M	src/interfaces/modular/IO.i
| | |    
| * | commit ed771b88794f539d927aac3387ac179de04935e8
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Wed Aug 17 20:35:09 2011 +0530
| | | 
| | |     A couple of documentation additions.
| | | 
| | | M	src/shogun/classifier/svm/OnlineLibLinear.h
| | | M	src/shogun/classifier/svm/OnlineSVMSGD.h
| | |    
| * | commit 79ae518b40bf6c8b181414f070f690fd34040c59
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Wed Aug 17 20:25:39 2011 +0530
| |   
| |       Added VW to swig definitions.
| |   
| |   M	src/interfaces/modular/Classifier.i
| |   M	src/interfaces/modular/Classifier_includes.i
| |   M	src/interfaces/modular/Features.i
| |   M	src/interfaces/modular/IO.i
| |   M	src/interfaces/modular/IO_includes.i
| |   
* | commit eb4c839621903a1acdbbb437c423f36cb0387aad
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 17 10:19:02 2011 +0200
| | 
| |     start to transition structure to SG* data types
| | 
| | M	src/shogun/structure/DynProg.cpp
| | M	src/shogun/structure/DynProg.h
| | M	src/shogun/structure/PlifMatrix.cpp
| | M	src/shogun/structure/PlifMatrix.h
| | M	src/shogun/ui/SGInterface.cpp
| |   
* | commit 9761262efe2ada47a4eed4d21193ccaf38b4dac2
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 17 10:18:31 2011 +0200
| | 
| |     rename lenght -> len to fix warning about naming collision
| | 
| | M	src/shogun/classifier/vw/VwEnvironment.cpp
| |   
* | commit d2662fe3a02406c9f271c21bbf2f1014891e250a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 17 10:18:03 2011 +0200
| | 
| |     fix SGNDArray python typemap
| | 
| | M	src/interfaces/python_modular/swig_typemaps.i
| |   
* | commit e271fc67e52b38915d0f75a90d9cb4c16c26fd79
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Aug 17 04:07:29 2011 +0400
| | 
| |     Fixed mistakes in doc of dim reduction preprocessors
| | 
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| | M	src/shogun/preprocessor/Isomap.h
| | M	src/shogun/preprocessor/LaplacianEigenmaps.h
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | M	src/shogun/preprocessor/MultidimensionalScaling.h
| |   
* | commit 6e008b46682ff65db18c889f3ba7c9f4db49ba59
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Aug 17 03:02:13 2011 +0400
| | 
| |     Temporary? hack for JAVA externalization
| | 
| | M	src/interfaces/modular/modshogun_ignores.i
| |   
* | commit 8f5d697debf68ae3ec3fdc7c7f0ae1d60de3caa7
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Aug 17 01:57:05 2011 +0400
| | 
| |     Java externalization fixes
| | 
| | M	src/interfaces/modular/Library.i
| | M	src/interfaces/modular/ModelSelection.i
| | M	src/interfaces/modular/SGBase.i
| |     
* |   commit a419f9b4cb5a6111f29c1c0a029a781a2ea81786
|\ \  Merge: 2d2391f 4b721c8
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Aug 17 01:56:27 2011 +0400
| | | 
| | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | |      
| * |   commit 4b721c832eb58e2e8e692f9096513ddf6017f5b8
| |\ \  Merge: 54d0eba 094d8ec
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Aug 16 14:55:14 2011 -0700
| | | | 
| | | |     Merge pull request #300 from frx/streaming_vw
| | | |     
| | | |     SGD using CStreamingVwFeatures
| | | |     
| | * | commit 094d8ec97d51f9bcddc8aa565aae850c33177d4e
| |/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | |   Date:   Wed Aug 17 03:11:22 2011 +0530
| | |   
| | |       Corrections to expand_if_required for StreamingVwFeatures.Added StreamingVwFeatures example.
| | |   
| | |   A	examples/undocumented/libshogun/streaming_vwfeatures.cpp
| | |   M	src/shogun/classifier/svm/OnlineSVMSGD.cpp
| | |   M	src/shogun/classifier/vw/VwEnvironment.cpp
| | |   M	src/shogun/features/StreamingVwFeatures.h
| | |    
* | | commit 2d2391fecda18f593b67e2b2f917421cdb82bfde
|/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |   Date:   Wed Aug 17 01:55:07 2011 +0400
| |   
| |       Warning fixes
| |   
| |   M	src/shogun/classifier/mkl/MKLMultiClassGradient.h
| |   M	src/shogun/classifier/svm/LaRank.h
| |   M	src/shogun/distributions/PositionalPWM.h
| |   M	src/shogun/features/LBPPyrDotFeatures.h
| |   M	src/shogun/io/SerializableAsciiFile.h
| |   M	src/shogun/io/SerializableFile.h
| |   M	src/shogun/kernel/MultitaskKernelMaskNormalizer.h
| |   M	src/shogun/kernel/SpectrumMismatchRBFKernel.h
| |   M	src/shogun/kernel/SpectrumRBFKernel.h
| |   M	src/shogun/modelselection/GridSearchModelSelection.h
| |   M	src/shogun/modelselection/ParameterCombination.h
| |   
* | commit 54d0eba693f34b9e7c41418f822d0bc4685dd748
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Aug 16 23:06:02 2011 +0200
| | 
| |     fix compile error when logsumarray is enabled
| | 
| | M	src/shogun/mathematics/Math.h
| |   
* | commit 49ff85135f6e96fe2527846e316f85f02f6980ca
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Aug 16 22:58:58 2011 +0200
| | 
| |     temporary workaround for crasher in serialization
| | 
| | M	src/shogun/lib/DataType.h
| |   
* | commit 6446418311c1fec50dd8f8aabd54172d734dbe2a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Aug 16 22:42:35 2011 +0200
| | 
| |     unignore a few more classes like SGIO, version, ...
| | 
| | M	src/interfaces/modular/modshogun_ignores.i
| |     
* |   commit 14d5e3442752a66f300facd8adf0d4ce974c749d
|\ \  Merge: 747d65d 98fea46
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Aug 16 08:19:06 2011 -0700
| | | 
| | |     Merge pull request #299 from karlnapf/master
| | |     
| | |     added example/test for stratified cross-validation splitting
| | |    
| * | commit 98fea466bf6737085daffb956a8aa94d165d995b
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Aug 16 17:13:48 2011 +0200
| | | 
| | |     added get_classes method and made get_num_classes method more general
| | | 
| | | M	src/shogun/features/Labels.cpp
| | | M	src/shogun/features/Labels.h
| | |    
| * | commit 149fb3bdcf7a0cb414603682635189819211217d
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Aug 16 17:13:27 2011 +0200
| | | 
| | |     added get_array() method
| | | 
| | | M	src/shogun/lib/Set.h
| | |    
| * | commit 26cd4949de55eb5eb82f7a4a8a4e9171b9c7e75d
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Aug 16 17:13:17 2011 +0200
| | | 
| | |     added checks for "stupid" combinations of num_labels and num_subsets
| | | 
| | | M	src/shogun/evaluation/SplittingStrategy.cpp
| | |    
| * | commit 30d3b54b51ffd53178fb0600fcfa6f0ffb8d85f3
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Aug 16 17:12:21 2011 +0200
| | | 
| | |     added example/test for stratified xval-splitting
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | | A	examples/undocumented/libshogun/splitting_stratified_crossvalidation.cpp
| | |    
| * | commit d6fd81c33727955a2828a1d3ee937b93fba7e9ab
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Aug 16 14:37:13 2011 +0200
| | | 
| | |     -comment change
| | |     -applied changed from CSplittingStrategy
| | | 
| | | M	src/shogun/evaluation/StratifiedCrossValidationSplitting.cpp
| | | M	src/shogun/evaluation/StratifiedCrossValidationSplitting.h
| | |    
| * | commit 8c2f0e1d33495ce5fa9456cadf4628e1549137f2
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Tue Aug 16 14:36:39 2011 +0200
| |   
| |       -introduced init method
| |       -made class serializable
| |       -put array from stack to heap
| |       -formatting changes
| |   
| |   M	src/shogun/evaluation/SplittingStrategy.cpp
| |   M	src/shogun/evaluation/SplittingStrategy.h
| |   
* | commit 747d65d2752714f7669115d246e8a38410f4bd04
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 16 16:49:53 2011 +0400
| | 
| |     More warning hunt
| | 
| | M	src/shogun/classifier/KNN.h
| | M	src/shogun/classifier/mkl/MKL.h
| | M	src/shogun/distance/KernelDistance.h
| | M	src/shogun/io/SerializableFile.h
| | M	src/shogun/kernel/ANOVAKernel.h
| | M	src/shogun/kernel/CustomKernel.h
| | M	src/shogun/kernel/ExponentialKernel.h
| | M	src/shogun/kernel/GaussianKernel.h
| | M	src/shogun/kernel/HistogramIntersectionKernel.h
| | M	src/shogun/kernel/SpectrumMismatchRBFKernel.h
| | M	src/shogun/kernel/SpectrumRBFKernel.h
| | M	src/shogun/kernel/SqrtDiagKernelNormalizer.h
| | M	src/shogun/kernel/ZeroMeanCenterKernelNormalizer.h
| | M	src/shogun/machine/Machine.h
| | M	src/shogun/mathematics/Math.h
| | M	src/shogun/modelselection/ModelSelection.h
| | M	src/shogun/modelselection/ModelSelectionParameters.h
| |   
* | commit 703659c1938de7fdeef6e54321c1b336c5aa3261
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 16 14:36:22 2011 +0400
| | 
| |     More warning hunt
| | 
| | M	src/shogun/base/ParameterMap.h
| | M	src/shogun/kernel/ANOVAKernel.h
| | M	src/shogun/kernel/BesselKernel.h
| | M	src/shogun/kernel/CircularKernel.h
| | M	src/shogun/kernel/DistanceKernel.h
| | M	src/shogun/kernel/DistantSegmentsKernel.h
| | M	src/shogun/kernel/ExponentialKernel.h
| | M	src/shogun/kernel/Kernel.h
| | M	src/shogun/machine/Machine.h
| | M	src/shogun/ui/SyntaxHighLight.h
| |   
* | commit edc7424d50f6b2756b3ff5201447a98e662a5e19
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 16 14:12:00 2011 +0400
| | 
| |     Doc safari
| | 
| | M	src/shogun/base/DynArray.h
| | M	src/shogun/base/SGObject.h
| | M	src/shogun/classifier/GaussianNaiveBayes.h
| | M	src/shogun/features/SparseFeatures.h
| | M	src/shogun/features/Subset.h
| | M	src/shogun/io/File.h
| | M	src/shogun/io/SGIO.h
| | M	src/shogun/io/SerializableAsciiFile.h
| | M	src/shogun/io/SerializableAsciiReader00.h
| | M	src/shogun/io/SerializableFile.h
| | M	src/shogun/kernel/RationalQuadraticKernel.h
| | M	src/shogun/lib/DataType.h
| | M	src/shogun/lib/DynamicArray.h
| | M	src/shogun/lib/DynamicObjectArray.h
| |   
* | commit 3f2cb7ea17f9163dbedd8aa1cac27a3da38e7a7e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Aug 16 11:13:24 2011 +0200
| | 
| |     use matlabroot to determine matlab root path
| |     
| |     hopefully fixes matlab 2011a compile issues
| | 
| | M	src/configure
| |     
* |   commit 41e3393cc32002bbedbcfa94ee03935016a4ffd8
|\ \  Merge: 1e71db1 6b4e7a2
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Aug 16 00:28:35 2011 -0700
| | | 
| | |     Merge pull request #298 from frx/streaming_vw
| | |     
| | |     Added VW example and fixed a write-mode argument in IOBuffer.
| | |    
| * | commit 6b4e7a242e02ba0e0a9b24152c80a336c17d857e
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Tue Aug 16 12:30:40 2011 +0530
| |   
| |       Added VW example and fixed a write-mode argument in IOBuffer.
| |   
| |   A	examples/undocumented/libshogun/streaming_vowpalwabbit.cpp
| |   M	src/shogun/io/IOBuffer.cpp
| |   
* | commit 1e71db163be8aa59f5ab16d668d1a827c541c800
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 16 02:04:10 2011 +0400
| | 
| |     More warning hunt
| | 
| | M	src/shogun/base/Parallel.h
| | M	src/shogun/features/CombinedDotFeatures.h
| | M	src/shogun/features/Features.h
| | M	src/shogun/features/SimpleFeatures.h
| | M	src/shogun/features/StringFeatures.h
| | M	src/shogun/features/Subset.h
| | M	src/shogun/lib/DataType.h
| |     
* |   commit d05ad85d65ccf061cf9121717715adcdeb8414f7
|\ \  Merge: 4826d03 693acf9
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Aug 15 14:57:31 2011 -0700
| | | 
| | |     Merge pull request #297 from frx/streaming_vw
| | |     
| | |     Missing/incorrect doc additions and corrections, plus load_regressor() for VW
| | |    
| * | commit 693acf90b7236e9390421b90da0445afa2a81668
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Tue Aug 16 03:15:42 2011 +0530
| | | 
| | |     Reverted Doxyfile.
| | | 
| | | M	doc/Doxyfile
| | |    
| * | commit f2cce5fbbe9184cf22ff8686c38714d15310cbe3
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Tue Aug 16 03:14:59 2011 +0530
| |   
| |       Fixed most online framework warnings.
| |   
| |   M	doc/Doxyfile
| |   M	src/shogun/classifier/vw/VowpalWabbit.cpp
| |   M	src/shogun/classifier/vw/VowpalWabbit.h
| |   M	src/shogun/classifier/vw/VwParser.h
| |   M	src/shogun/classifier/vw/VwRegressor.cpp
| |   M	src/shogun/classifier/vw/VwRegressor.h
| |   M	src/shogun/classifier/vw/cache/VwCacheReader.h
| |   M	src/shogun/classifier/vw/cache/VwNativeCacheReader.h
| |   M	src/shogun/classifier/vw/cache/VwNativeCacheWriter.h
| |   M	src/shogun/classifier/vw/vw_common.h
| |   M	src/shogun/features/StreamingDotFeatures.h
| |   M	src/shogun/io/InputParser.h
| |   M	src/shogun/io/ParseBuffer.h
| |   M	src/shogun/io/StreamingAsciiFile.h
| |   M	src/shogun/io/StreamingFileFromFeatures.h
| |   M	src/shogun/io/StreamingFileFromSimpleFeatures.h
| |   M	src/shogun/io/StreamingFileFromSparseFeatures.h
| |   M	src/shogun/io/StreamingFileFromStringFeatures.h
| |   M	src/shogun/io/StreamingVwCacheFile.h
| |   M	src/shogun/io/StreamingVwFile.h
| |   M	src/shogun/lib/v_array.h
| |   M	src/shogun/loss/HingeLoss.h
| |   M	src/shogun/loss/LogLoss.h
| |   M	src/shogun/loss/LogLossMargin.h
| |   M	src/shogun/loss/LossFunction.h
| |   M	src/shogun/loss/SmoothHingeLoss.h
| |   M	src/shogun/loss/SquaredHingeLoss.h
| |   M	src/shogun/loss/SquaredLoss.h
| |   
* | commit 4826d0374280e14b344be2471e3d2c49b5e5bb93
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 16 00:41:33 2011 +0400
| | 
| |     Moar doc
| | 
| | M	src/shogun/classifier/svm/LibSVM.h
| | M	src/shogun/classifier/svm/MultiClassSVM.h
| | M	src/shogun/classifier/svm/QPBSVMLib.h
| | M	src/shogun/classifier/svm/SVMOcas.h
| | M	src/shogun/distributions/PositionalPWM.h
| | M	src/shogun/features/SimpleFeatures.h
| | M	src/shogun/features/StringFeatures.h
| | M	src/shogun/lib/FibonacciHeap.h
| | M	src/shogun/mathematics/Math.h
| |   
* | commit 9d2dd548c70bff45d8ac5a1aa00556ca425ef365
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 16 00:16:25 2011 +0400
| | 
| |     Updated doc for dimensionality reduction algorithms
| | 
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/Isomap.h
| | M	src/shogun/preprocessor/LaplacianEigenmaps.h
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| | M	src/shogun/preprocessor/MultidimensionalScaling.h
| |   
* | commit bcf30020cffb01e6985c6cea76914a75dc3f3b36
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Aug 15 21:53:03 2011 +0200
| | 
| |     LOCACCURACY is only available w/ LOGCACHE
| | 
| | M	src/shogun/mathematics/Math.h
| |   
* | commit 9ca73170fb0f87974a3fcd3342136130d6b16544
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Aug 15 21:29:17 2011 +0200
| | 
| |     fix build failure in ui trying to access protected member variable
| | 
| | M	src/shogun/mathematics/Math.h
| | M	src/shogun/ui/SGInterface.cpp
| |     
* |   commit 2f343fb916cf3f356ac2a5acf33fc0450c2e299b
|\ \  Merge: 62e6aee e034620
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Aug 15 11:44:05 2011 -0700
| | | 
| | |     Merge pull request #295 from frx/conv_to_32
| | |     
| | |     Conversion of weight vector and related parameters to float in Online Framework
| | |    
| * | commit e03462098c2f454b366d1380d82af5b647059c33
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Aug 15 06:31:25 2011 +0530
| | | 
| | |     Remove a doc typo.
| | | 
| | | M	examples/undocumented/libshogun/streaming_from_simple.cpp
| | |    
| * | commit 29768347939812366225f9b324e5eb9655c235c3
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Aug 15 03:01:28 2011 +0530
| | | 
| | |     Working float64_t to float32_t transition for online framework.
| | | 
| | | M	examples/undocumented/libshogun/streaming_from_simple.cpp
| | | M	src/shogun/classifier/svm/OnlineSVMSGD.cpp
| | | M	src/shogun/features/StreamingDotFeatures.h
| | | M	src/shogun/features/StreamingFeatures.h
| | | M	src/shogun/features/StreamingSimpleFeatures.h
| | | M	src/shogun/features/StreamingSparseFeatures.h
| | | M	src/shogun/features/StreamingStringFeatures.h
| | | M	src/shogun/features/StreamingVwFeatures.cpp
| | | M	src/shogun/features/StreamingVwFeatures.h
| | | M	src/shogun/io/StreamingAsciiFile.cpp
| | | M	src/shogun/io/StreamingAsciiFile.h
| | | M	src/shogun/io/StreamingFile.cpp
| | | M	src/shogun/io/StreamingFile.h
| | | M	src/shogun/io/StreamingFileFromFeatures.cpp
| | | M	src/shogun/io/StreamingFileFromFeatures.h
| | | M	src/shogun/io/StreamingFileFromSimpleFeatures.h
| | | M	src/shogun/io/StreamingFileFromSparseFeatures.h
| | | M	src/shogun/io/StreamingFileFromStringFeatures.h
| | | M	src/shogun/io/StreamingVwCacheFile.cpp
| | | M	src/shogun/io/StreamingVwCacheFile.h
| | | M	src/shogun/io/StreamingVwFile.cpp
| | | M	src/shogun/io/StreamingVwFile.h
| | | M	src/shogun/machine/OnlineLinearMachine.cpp
| | | M	src/shogun/machine/OnlineLinearMachine.h
| | | M	src/shogun/mathematics/Math.cpp
| | |    
| * | commit 692f79feae4a8c516ec57eb181aa12cca620295e
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Mon Aug 15 01:10:29 2011 +0530
| |   
| |       Partial transition to float32_t for online framework.
| |   
| |   M	src/shogun/classifier/svm/OnlineSVMSGD.cpp
| |   M	src/shogun/classifier/vw/VowpalWabbit.cpp
| |   M	src/shogun/features/StreamingDotFeatures.h
| |   M	src/shogun/features/StreamingFeatures.h
| |   M	src/shogun/features/StreamingSimpleFeatures.h
| |   M	src/shogun/features/StreamingSparseFeatures.h
| |   M	src/shogun/features/StreamingStringFeatures.h
| |   M	src/shogun/features/StreamingVwFeatures.cpp
| |   M	src/shogun/features/StreamingVwFeatures.h
| |   M	src/shogun/io/StreamingAsciiFile.cpp
| |   M	src/shogun/io/StreamingAsciiFile.h
| |   M	src/shogun/io/StreamingFile.cpp
| |   M	src/shogun/io/StreamingFile.h
| |   M	src/shogun/io/StreamingFileFromFeatures.cpp
| |   M	src/shogun/io/StreamingFileFromFeatures.h
| |   M	src/shogun/io/StreamingFileFromSimpleFeatures.h
| |   M	src/shogun/io/StreamingFileFromSparseFeatures.h
| |   M	src/shogun/io/StreamingFileFromStringFeatures.h
| |   M	src/shogun/io/StreamingVwCacheFile.cpp
| |   M	src/shogun/io/StreamingVwCacheFile.h
| |   M	src/shogun/io/StreamingVwFile.cpp
| |   M	src/shogun/io/StreamingVwFile.h
| |   M	src/shogun/machine/OnlineLinearMachine.cpp
| |   M	src/shogun/machine/OnlineLinearMachine.h
| |   
* | commit 62e6aee40a47102c70fd1473f5f2b16554ee6a4d
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Aug 15 14:57:25 2011 +0400
| | 
| |     Made HLLE parallel
| | 
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| |   
* | commit cb38bbf8d65493ea64365abf0e586a2c775c346a
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Aug 15 14:57:10 2011 +0400
| | 
| |     Some clean for LTSA parallelization
| | 
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| |     
* |   commit 0a080465977519dc412836641d5ea3bed76f8aec
|\ \  Merge: 9f86e64 4560951
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Aug 15 01:05:04 2011 -0700
| | | 
| | |     Merge pull request #296 from alesis/gmm
| | |     
| | |     Multiple fixes (SG*, log-likelihood instead of likelihood), improved docu
| | |    
| * | commit 4560951cce29329ae9708dec6662e0da810314b2
|/ /  Author: Alesis Novik <alesisnov@gmail.com>
| |   Date:   Sun Aug 14 23:02:17 2011 +0100
| |   
| |       Multiple fixes (SG*, log-likelihood instead of likelihood), improved documentation
| |   
| |   M	examples/undocumented/python_modular/graphical/em_1d_gmm.py
| |   M	examples/undocumented/python_modular/graphical/em_2d_gmm.py
| |   M	examples/undocumented/python_modular/graphical/smem_1d_gmm.py
| |   M	examples/undocumented/python_modular/graphical/smem_2d_gmm.py
| |   M	src/shogun/clustering/GMM.cpp
| |   M	src/shogun/clustering/GMM.h
| |   M	src/shogun/distributions/Gaussian.cpp
| |   M	src/shogun/distributions/Gaussian.h
| |   M	src/shogun/features/DotFeatures.cpp
| |   M	src/shogun/features/DotFeatures.h
| |   
* | commit 9f86e64d92c947f2d55b5347994be098632cf51d
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Aug 15 04:20:10 2011 +0400
| | 
| |     Added parameters addition to dimensionality reduction algos
| | 
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/Isomap.h
| | M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| | M	src/shogun/preprocessor/LaplacianEigenmaps.h
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| | M	src/shogun/preprocessor/MultidimensionalScaling.h
| |   
* | commit b219442246807f28ade87c10a1a5cb95dc34cf8d
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Aug 15 03:56:19 2011 +0400
| | 
| |     Made LTSA parallel
| | 
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| |   
* | commit 4c5331cd2f2bf0ba762c14da16102a9c06ea7264
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Aug 15 03:55:13 2011 +0400
| | 
| |     Removed unnecessary pthread_exit
| | 
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| |   
* | commit c02be2d605a6ddddf70c3cc0e0fe5af4605938f0
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Aug 15 03:14:36 2011 +0400
| | 
| |     Added pthread_exit for Isomap and MDS
| | 
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| |   
* | commit 81cc6a2e9bc14974bc55f7fce5261e4b05cbf0af
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Aug 15 02:57:00 2011 +0400
| | 
| |     Made LLE parallel
| | 
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| |   
* | commit 953fa3ae30b31d241bc554cbf9f363f02e9d6b6c
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Aug 15 02:56:41 2011 +0400
| | 
| |     Got graphical dimreduct examples to work again
| | 
| | M	examples/undocumented/python_modular/graphical/dimreduct/hemisphere.py
| | M	examples/undocumented/python_modular/graphical/dimreduct/swissroll.py
| |   
* | commit 5e6a160721c864818c9127b685715f6d062ac84d
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Aug 15 02:07:24 2011 +0400
| | 
| |     Fixed Classic/Landmark modular examples
| | 
| | D	examples/undocumented/csharp_modular/preprocessor_classicisomap_modular.cs
| | A	examples/undocumented/csharp_modular/preprocessor_isomap_modular.cs
| | D	examples/undocumented/java_modular/preprocessor_classicisomap_modular.java
| | D	examples/undocumented/java_modular/preprocessor_classicmds_modular.java
| | A	examples/undocumented/java_modular/preprocessor_isomap_modular.java
| | D	examples/undocumented/java_modular/preprocessor_landmarkisomap_modular.java
| | D	examples/undocumented/java_modular/preprocessor_landmarkmds_modular.java
| | A	examples/undocumented/java_modular/preprocessor_multidimensionalscaling_modular.java
| | D	examples/undocumented/lua_modular/preprocessor_classicisomap_modular.lua
| | A	examples/undocumented/lua_modular/preprocessor_isomap_modular.lua
| | D	examples/undocumented/python_modular/preprocessor_classicisomap_modular.py
| | D	examples/undocumented/python_modular/preprocessor_classicmds_modular.py
| | A	examples/undocumented/python_modular/preprocessor_isomap_modular.py
| | D	examples/undocumented/python_modular/preprocessor_landmarkisomap_modular.py
| | D	examples/undocumented/python_modular/preprocessor_landmarkmds_modular.py
| | A	examples/undocumented/python_modular/preprocessor_multidimensionalscaling_modular.py
| | D	examples/undocumented/ruby_modular/preprocessor_classicisomap_modular.rb
| | D	examples/undocumented/ruby_modular/preprocessor_classicmds_modular.rb
| | A	examples/undocumented/ruby_modular/preprocessor_isomap_modular.rb
| | D	examples/undocumented/ruby_modular/preprocessor_landmarkisomap_modular.rb
| | D	examples/undocumented/ruby_modular/preprocessor_landmarkmds_modular.rb
| | A	examples/undocumented/ruby_modular/preprocessor_multidimensionalscaling_modular.rb
| |   
* | commit cfe4efbf46c4e8c89fed230357c6853a6a0d6d91
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Aug 15 02:00:13 2011 +0400
| | 
| |     United Landmark/Classic MDS and Isomap stuff
| | 
| | M	src/interfaces/modular/Preprocessor.i
| | M	src/interfaces/modular/Preprocessor_includes.i
| | D	src/shogun/preprocessor/ClassicIsomap.h
| | D	src/shogun/preprocessor/ClassicMDS.cpp
| | D	src/shogun/preprocessor/ClassicMDS.h
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/Isomap.h
| | D	src/shogun/preprocessor/LandmarkIsomap.h
| | D	src/shogun/preprocessor/LandmarkMDS.cpp
| | D	src/shogun/preprocessor/LandmarkMDS.h
| | A	src/shogun/preprocessor/MultidimensionalScaling.cpp
| | A	src/shogun/preprocessor/MultidimensionalScaling.h
| | M	src/shogun/preprocessor/Preprocessor.h
| |   
* | commit 4d757d9600c0316082ed812a922020ad4b712f10
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Aug 14 22:48:05 2011 +0200
| | 
| |     set DOXYGEN_SHOULD_SKIP this when generating documentation
| | 
| | M	src/interfaces/modular/modshogun.doxy
| |   
* | commit fe8cd5cd36607684d14491bf53ab763bfa7c21b4
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Aug 14 21:58:03 2011 +0200
| | 
| |     call CMath::is_finite() instead of CMath::finite()
| | 
| | M	src/shogun/mathematics/Math.h
| |   
* | commit ea26eaa83ec12feb7a80ea8b6f11903351d05b65
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Aug 14 20:21:38 2011 +0200
| | 
| |     use CALLOC instead of malloc and fill_vector
| | 
| | M	src/shogun/mathematics/Math.h
| |   
* | commit 5f776e8b6a379223ad0ae36f39a3ccc8e99c8356
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 14 14:55:34 2011 +0400
| | 
| |     Got PCA to work in the right way again
| | 
| | M	src/shogun/preprocessor/PCA.cpp
| |     
* |   commit cb0a6caca7d4a4baed1ced0cf19f0a3992da39d7
|\ \  Merge: 60e3bad 1fe7294
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Aug 14 03:20:16 2011 -0700
| | | 
| | |     Merge pull request #294 from frx/streaming_vw
| | |     
| | |     VW Class
| | |    
| * | commit 1fe72944e562bcc4affdabc8014a559304c7a552
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sun Aug 14 09:38:05 2011 +0530
| | | 
| | |     Corrected and documented StreamingSparseFeatures.
| | |     Added an example for OnlineSVMSGD.
| | | 
| | | A	examples/undocumented/libshogun/streaming_onlinesvmsgd.cpp
| | | M	src/shogun/features/StreamingSimpleFeatures.h
| | | M	src/shogun/features/StreamingSparseFeatures.h
| | | M	src/shogun/machine/OnlineLinearMachine.h
| | |    
| * | commit 14946c510b9a2ca67a380f6e25ec11fdf8a50ed5
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sun Aug 14 04:05:42 2011 +0530
| | | 
| | |     Added VowpalWabbit class.
| | | 
| | | M	src/shogun/classifier/vw/VowpalWabbit.cpp
| | | M	src/shogun/classifier/vw/VowpalWabbit.h
| | | M	src/shogun/machine/OnlineLinearMachine.cpp
| | |    
| * | commit c9a0d164a82f41659ac94d801f5bdd24e8cbd8f3
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Sun Aug 14 03:35:06 2011 +0530
| |   
| |       Incorporated dump regressor in VowpalWabbit.
| |       Added vw_math.
| |   
| |   A	src/shogun/classifier/vw/VowpalWabbit.cpp
| |   A	src/shogun/classifier/vw/VowpalWabbit.h
| |   A	src/shogun/classifier/vw/vw_math.cpp
| |   A	src/shogun/classifier/vw/vw_math.h
| |   M	src/shogun/features/StreamingVwFeatures.h
| |     
* |   commit 60e3badf826634c4bb430d64d865512f72eef4a8
|\ \  Merge: b1d1a6b 5d60b6a
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sat Aug 13 14:42:44 2011 -0700
| | | 
| | |     Merge pull request #293 from frx/streaming_vw
| | |     
| | |     dump_regressor added to VwRegressor
| | |    
| * | commit 5d60b6affb7fe9d44be1c8b62e07d27ce69018b6
| | | Author: Shashwat Lal Das <shashwat@Xan-Kriegor.(none)>
| | | Date:   Sun Aug 14 03:04:53 2011 +0530
| | | 
| | |     Minor type change in VwRegressor.
| | | 
| | | M	src/shogun/classifier/vw/VwRegressor.cpp
| | |    
| * | commit 94fd8aefa69cfa8535df6698b1125f05d079bd92
| | | Author: Shashwat Lal Das <shashwat@Xan-Kriegor.(none)>
| | | Date:   Sun Aug 14 02:52:58 2011 +0530
| | | 
| | |     Made VW version part of env.
| | | 
| | | M	src/shogun/classifier/vw/cache/VwNativeCacheReader.cpp
| | | M	src/shogun/classifier/vw/cache/VwNativeCacheWriter.cpp
| | |    
| * | commit 3b4d08021c88d971d7ff40b80a172e16e7a59efd
|/ /  Author: Shashwat Lal Das <shashwat@Xan-Kriegor.(none)>
| |   Date:   Sun Aug 14 02:40:53 2011 +0530
| |   
| |       Added dump_regressor to VwRegressor.
| |   
| |   M	src/shogun/classifier/vw/VwEnvironment.cpp
| |   M	src/shogun/classifier/vw/VwEnvironment.h
| |   M	src/shogun/classifier/vw/VwRegressor.cpp
| |   M	src/shogun/classifier/vw/VwRegressor.h
| |   
* | commit b1d1a6b9a6eed84f659ebeb64e657a390c0f8e7b
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 14 00:59:16 2011 +0400
| | 
| |     Fixed more warnings (Parameter,Version)
| | 
| | M	src/shogun/base/Parameter.h
| | M	src/shogun/base/Version.h
| |   
* | commit dbf2ab3bdf396e9f49b6269c4401382e7a94b670
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 13 23:44:57 2011 +0400
| | 
| |     Got rid of Preprocessor doxygen warnings
| | 
| | M	src/shogun/preprocessor/Preprocessor.h
| | M	src/shogun/preprocessor/RandomFourierGaussPreproc.h
| | M	src/shogun/preprocessor/SimplePreprocessor.h
| | M	src/shogun/preprocessor/SparsePreprocessor.h
| | M	src/shogun/preprocessor/StringPreprocessor.h
| |   
* | commit e57e521fb5feaa29e526f0f0cc77d90a08ecc950
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 13 23:02:56 2011 +0400
| | 
| |     Improved java svmlight externalization example
| | 
| | M	examples/undocumented/java_modular/serialization_svmlight_modular.java
| |   
* | commit 0f67ca81f5663a1efeb84bd932fb9bfda2e60758
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 13 23:02:29 2011 +0400
| | 
| |     Codestyle fix for java externalization routines
| | 
| | M	src/interfaces/modular/SGBase.i
| |   
* | commit 86d2c7f84bb4a725ea64bba04426baa3e3d8d3d4
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 13 23:02:07 2011 +0400
| | 
| |     Restored Dynarray modular renames
| | 
| | M	src/interfaces/modular/Library.i
| |   
* | commit ad1314a98b0c84ad32e19f0485cfc8c3c182a003
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Aug 13 20:21:27 2011 +0200
| | 
| |     fix remaining warnings in libshogun
| | 
| | M	src/shogun/classifier/vw/cache/VwNativeCacheReader.cpp
| | M	src/shogun/kernel/SparseSpatialSampleStringKernel.cpp
| |   
* | commit aecb8bf91ee41e899782f86318d64001ec741969
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Aug 13 17:34:50 2011 +0200
| | 
| |     fix crashers in sparse features and svmocas
| | 
| | M	src/shogun/classifier/svm/SVMOcas.cpp
| | M	src/shogun/features/Labels.cpp
| | M	src/shogun/features/SparseFeatures.h
| | M	src/shogun/lib/DataType.h
| |   
* | commit 9350b71665283933bfbddbd16647eb79031636b5
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 13 15:38:27 2011 +0400
| | 
| |     Got java externalization to work
| | 
| | M	src/interfaces/modular/SGBase.i
| |   
* | commit 52fbaf1fa5e3f9a88802706e8effdaa0776f7436
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Aug 13 07:26:37 2011 +0200
| | 
| |     kill remaining warnings for python_modular
| | 
| | M	src/shogun/classifier/mkl/MKL.h
| | M	src/shogun/classifier/svm/SGDQN.h
| | M	src/shogun/kernel/SparseSpatialSampleStringKernel.cpp
| |   
* | commit c1d50d1d4773efe4fd451a2dc7c491b817d89801
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Aug 13 07:05:29 2011 +0200
| | 
| |     fix compile error when compiling without reference counting
| | 
| | M	src/shogun/base/SGObject.h
| |   
* | commit dd165c51bb07c391e9845dec799e1215c8a3bfd3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 12 22:29:58 2011 +0200
| | 
| |     fix further warning in io
| | 
| | M	src/shogun/io/SerializableXmlReader00.cpp
| |     
* |   commit 850010a854b1b1be32a5974f7899b258589c51c3
|\ \  Merge: 4c34008 cb5c195
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Aug 12 12:25:05 2011 -0700
| | | 
| | |     Merge pull request #292 from gsomix/master
| | |     
| | |     Implemented Hash set and added 'mythical 15 milliseconds' for Fibonacci heap
| | |    
| * | commit cb5c195b58f4fb13596bb849f9a5d1305abd2890
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Fri Aug 12 23:06:05 2011 +0400
| | | 
| | |     Implemented Hash set and added 'mythical 15 milliseconds' for Fibonacci heap
| | | 
| | | M	src/shogun/lib/FibonacciHeap.cpp
| | | M	src/shogun/lib/FibonacciHeap.h
| | | A	src/shogun/lib/HashSet.cpp
| | | A	src/shogun/lib/HashSet.h
| | |      
| * |   commit ac3d853f253db540d72c970f8cf25569d118f3f8
| |\ \  Merge: 26d1e8b 4c34008
| |/ /  Author: Evgeniy Andreev <gsomix@gmail.com>
|/| |   Date:   Fri Aug 12 23:03:56 2011 +0400
| | |   
| | |       Merge branch 'master' of git://github.com/shogun-toolbox/shogun
| | |      
* | |   commit 4c340085996eb6ea5902db3f6901f7d505c3b158
|\ \ \  Merge: 0b64595 5865e2a
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Aug 12 07:42:30 2011 -0700
| | | | 
| | | |     Merge pull request #291 from frx/streaming_vw
| | | |     
| | | |     Documented and renamed a few functions in parser/ring for readability.
| | | |     
| * | | commit 5865e2a2f469d13aabdb1d0a9bf2279bc0c193c1
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Fri Aug 12 17:26:13 2011 +0530
| | | | 
| | | |     Documented and renamed a few functions in parser/ring for readability.
| | | |     Added set_free_vectors_on_destroy to ParseBuffer to handle cases from StreamingFileFrom_Features.
| | | | 
| | | | M	examples/undocumented/libshogun/streaming_from_simple.cpp
| | | | M	src/shogun/features/StreamingSimpleFeatures.h
| | | | M	src/shogun/features/StreamingVwFeatures.cpp
| | | | M	src/shogun/features/StreamingVwFeatures.h
| | | | M	src/shogun/io/InputParser.h
| | | | M	src/shogun/io/ParseBuffer.h
| | | |       
* | | |   commit 0b645950b322ed20857a196a975e0aa40d5441ad
|\ \ \ \  Merge: 99d18cc bf6e7e1
| | |_|/  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| |   Date:   Fri Aug 12 07:41:18 2011 -0700
| | | |   
| | | |       Merge pull request #290 from sploving/master
| | | |       
| | | |       add ruby and csharp docs
| | | |     
| * | | commit bf6e7e1fdfe406b1c61a705204caae72d83208bc
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Aug 12 16:43:30 2011 +0800
| | | | 
| | | |     add ruby and csharp docs
| | | | 
| | | | M	doc/pages/Installation.mainpage
| | | | M	doc/pages/ModularTutorial.mainpage
| | | |     
| * | | commit 96778ed76c0d27a723c3ab3a09dd2e2614ab9924
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Aug 12 16:42:50 2011 +0800
| | | | 
| | | |     add classifier_libsvm_minimal_modular.cs
| | | | 
| | | | A	examples/undocumented/csharp_modular/classifier_libsvm_minimal_modular.cs
| | | |     
* | | | commit 99d18ccc2634b9062ef183a18dc5267c2ef03786
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Aug 12 16:37:04 2011 +0200
| | | | 
| | | |     remove unused 'end' variable
| | | | 
| | | | M	src/shogun/classifier/svm/WDSVMOcas.cpp
| | | |     
* | | | commit fc12543ea57376ab67f51e113af530bf03dc1577
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Aug 12 16:18:15 2011 +0200
| | | | 
| | | |     fix remaining warnigns in classifier
| | | | 
| | | | M	src/shogun/classifier/mkl/MKL.cpp
| | | | M	src/shogun/classifier/svm/SubGradientSVM.cpp
| | | | M	src/shogun/classifier/svm/WDSVMOcas.cpp
| | | |     
* | | | commit 9778993cd0a56537731befd02fbbdac7c2e3b8ce
| |/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|/| |   Date:   Fri Aug 12 16:49:14 2011 +0400
| | |   
| | |       Fixed wrong deletion of SGNDArray<uint16_t>
| | |   
| | |   M	src/interfaces/modular/Library.i
| | |    
* | | commit cfab78295e85635c866e7361e6649ac71737b4bb
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Fri Aug 12 16:34:38 2011 +0400
| | | 
| | |     Added write/readObject for java serialization, added ignores and removed unnecessary modular classes
| | | 
| | | M	src/interfaces/modular/IO.i
| | | M	src/interfaces/modular/Library.i
| | | M	src/interfaces/modular/SGBase.i
| | | M	src/interfaces/modular/modshogun.i
| | | A	src/interfaces/modular/modshogun_ignores.i
| | |      
* | |   commit dbfda65ec87317bf1fee138f97407a4427544375
|\ \ \  Merge: 7594a76 a850d4f
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Aug 11 21:53:29 2011 -0700
| | | | 
| | | |     Merge pull request #288 from frx/streaming_vw
| | | |     
| | | |     Added StreamingVwFeatures.
| | | |     
| * | | commit a850d4f5f1e7338a304355687adf27fa23513f14
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Fri Aug 12 02:16:08 2011 +0530
| | | | 
| | | |     Switched to use of substring helpers for parsing streaming dense vectors.
| | | | 
| | | | M	src/shogun/io/AsciiFile.cpp
| | | | M	src/shogun/io/AsciiFile.h
| | | | M	src/shogun/io/StreamingAsciiFile.cpp
| | | | M	src/shogun/io/StreamingAsciiFile.h
| | | |     
| * | | commit c4ef195ef3b49aa0a9e552bba592c8155c1f8eb6
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Thu Aug 11 23:07:19 2011 +0530
| | | | 
| | | |     Added some initializers for StreamingVwFeatures.
| | | | 
| | | | M	src/shogun/features/StreamingVwFeatures.cpp
| | | | M	src/shogun/features/StreamingVwFeatures.h
| | | |     
| * | | commit 2770350c42535d6ad1489c6e55bf13becdf0f700
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Thu Aug 11 23:01:20 2011 +0530
| | | | 
| | | |     Added missing doc in StreamingVwFeatures.
| | | | 
| | | | M	src/shogun/features/StreamingVwFeatures.h
| | | |     
| * | | commit d60003857e52bfb31dbcdc6a534916a68c0b8e68
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Thu Aug 11 17:45:13 2011 +0530
| | | | 
| | | |     Added StreamingVwFeatures.
| | | | 
| | | | M	src/shogun/features/FeatureTypes.h
| | | | M	src/shogun/features/Features.cpp
| | | | A	src/shogun/features/StreamingVwFeatures.cpp
| | | | A	src/shogun/features/StreamingVwFeatures.h
| | | | M	src/shogun/io/InputParser.h
| | | | M	src/shogun/kernel/Kernel.cpp
| | | |       
* | | |   commit 7594a768cb7bc33417f90fa53c7b65907ee1faed
|\ \ \ \  Merge: 50d60be fbcb1ec
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| / /   Date:   Thu Aug 11 21:34:53 2011 -0700
| |/ /    
| | |         Merge pull request #289 from sploving/master
| | |         
| | |         ruby stringlist can work now
| | |    
| * | commit fbcb1ec4f37f3fa4505bd8846174201690a317f0
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Fri Aug 12 11:14:33 2011 +0800
| | | 
| | |     fix ruby stringlist bug, add result=arr statement
| | | 
| | | M	examples/undocumented/ruby_modular/features_string_char_modular.rb
| | | M	src/interfaces/ruby_modular/swig_typemaps.i
| | |    
| * | commit f97132ef8c622b65d3a4d4ee513db10791c51ff3
|/ /  Author: Baozeng Ding <sploving1@gmail.com>
| |   Date:   Fri Aug 12 10:53:27 2011 +0800
| |   
| |       fix ruby stringlist bug by removing SGFREE(str)
| |   
| |   M	src/interfaces/ruby_modular/swig_typemaps.i
| |   
* | commit 50d60be75904d7b230e4a45ee044d862949b93fe
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 11 20:38:46 2011 +0200
| | 
| |     use SG_S* function for static function
| | 
| | M	src/shogun/io/SerializableHdf5File.cpp
| |   
* | commit 7fb2ee0e47822c2cda2f890f44746ad0650fe750
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 11 20:33:53 2011 +0200
| | 
| |     fix warnings in classifiers
| | 
| | M	src/shogun/classifier/svm/SVMLight.cpp
| | M	src/shogun/classifier/svm/SVMOcas.cpp
| |   
* | commit 081405b98c89fdfe1f1048e73f25c0b355732b03
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 11 20:25:33 2011 +0200
| | 
| |     add SG_NOTIMPLEMENTED to fix switch CT_NDARRAY warning
| | 
| | M	src/shogun/io/SerializableAsciiFile.cpp
| | M	src/shogun/io/SerializableAsciiReader00.cpp
| | M	src/shogun/io/SerializableHdf5File.cpp
| | M	src/shogun/io/SerializableHdf5Reader00.cpp
| |   
* | commit b829fcc429e4b3efd521643fb972fd401b17cae8
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 11 20:07:54 2011 +0200
| | 
| |     initialize source and dest with NULL to fix uninited warnings
| | 
| | M	src/shogun/base/Parameter.cpp
| |     
* |   commit 7dcf548907fe8c7e08d9cd1d4e268f9edced4b5e
|\ \  Merge: d6b9d89 42f532d
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Aug 11 06:05:29 2011 -0700
| | | 
| | |     Merge pull request #287 from karlnapf/master
| | |     
| | |     ParameterMap is now not a CSGObject anymore
| | |    
| * | commit 42f532dc130b3ae4151ed8d89b364ba29a2efaef
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 11 14:16:30 2011 +0200
| | | 
| | |     applied changes of ParameterMap
| | | 
| | | M	examples/undocumented/libshogun/base_parameter_map.cpp
| | |    
| * | commit 73e5515a839fdf69e13ddc4afa929238d8e5561b
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 11 14:16:08 2011 +0200
| | | 
| | |     parameter map will be a variable of CSGObject, so must not be a CSGObject itself. switched to manual memory handling and removed inheritance.
| | | 
| | | M	src/shogun/base/ParameterMap.cpp
| | | M	src/shogun/base/ParameterMap.h
| | |    
| * | commit f95d3a0cc89971528a8c59731f4db144d8dc502d
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 11 14:15:19 2011 +0200
| | | 
| | |     made get_array const
| | | 
| | | M	src/shogun/lib/DynamicArray.h
| | | M	src/shogun/lib/DynamicObjectArray.h
| | |    
| * | commit 4be098c72fc1725e9f979e0591ab8f9232d984f8
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Thu Aug 11 14:15:07 2011 +0200
| |   
| |       made get_array const
| |   
| |   M	src/shogun/base/DynArray.h
| |     
* |   commit d6b9d892df4eb7d7b3fb427c7e98bfd474bde6e3
|\ \  Merge: ec41ad2 0367d91
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Aug 11 04:41:12 2011 -0700
| | | 
| | |     Merge pull request #286 from sploving/master
| | |     
| | |     support stringlist for csharp and add some examples
| | |    
| * | commit 0367d916d5e263d294325c74144e5bd7a20a4a57
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Aug 11 19:31:46 2011 +0800
| | | 
| | |     add some csharp examples
| | | 
| | | A	examples/undocumented/csharp_modular/features_string_char_modular.cs
| | | A	examples/undocumented/csharp_modular/kernel_linear_word_modular.cs
| | | A	examples/undocumented/csharp_modular/kernel_weighted_degree_string_modular.cs
| | |    
| * | commit bc6cd6c5e116a433782a10829428977671bc46e5
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Aug 11 19:26:45 2011 +0800
| | | 
| | |     support stringlist for csharp
| | | 
| | | M	src/interfaces/csharp_modular/swig_typemaps.i
| | |    
* | | commit ec41ad2f4f028779c05e5d9557f73d185ba4341f
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Aug 11 13:13:26 2011 +0200
| | | 
| | |     fix further compiler warnings
| | | 
| | | M	src/shogun/classifier/svm/ssl.cpp
| | | M	src/shogun/io/StreamingFile.cpp
| | | M	src/shogun/lib/DataType.h
| | |    
* | | commit 2042a6dd393ba1311f8a1e6e70951473d37e5293
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Aug 11 07:07:54 2011 +0200
| | | 
| | |     fix remaining warnings in parameter
| | | 
| | | M	src/shogun/base/Parameter.cpp
| | |    
* | | commit 6a23b056f30bd7774e04f547c9bc5a8e345a12a8
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Aug 11 07:05:36 2011 +0200
| | | 
| | |     fix warnign in DynProg about unused variable
| | | 
| | | M	src/shogun/structure/DynProg.cpp
| | |    
* | | commit 3adb67d077b4883945d0e3432855f49af6a90549
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Aug 11 07:04:06 2011 +0200
| | | 
| | |     use SG_SNOTIMPLEMENTED to fix compile error in non-SGObject derived class
| | | 
| | | M	src/shogun/base/Parameter.cpp
| | |    
* | | commit 1baaf47293dcf8904a3ae0345d5029508f1daee1
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Aug 11 00:35:27 2011 +0200
| | | 
| | |     fix case not handled in switch
| | | 
| | | M	src/shogun/base/Parameter.cpp
| | |    
* | | commit 1537fd1b8f0c48b7a6eac0050699a8ac0dbb2729
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Aug 11 00:35:01 2011 +0200
| | | 
| | |     fix further unused variable warnings
| | | 
| | | M	src/shogun/regression/svr/SVRLight.cpp
| | |      
* | |   commit 7cca7ff2b95e067797f7c89ddcd955c1f7761190
|\ \ \  Merge: 0796878 c73dbc8
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Aug 10 13:49:50 2011 -0700
| | | | 
| | | |     Merge pull request #285 from frx/streaming_vw
| | | |     
| | | |     Added StreamingVwCacheFile.
| | | |     
| * | | commit c73dbc8b7347e9f42a0e5ba5fe484ecd197055ed
|/ / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | |   Date:   Thu Aug 11 02:14:03 2011 +0530
| | |   
| | |       Added StreamingVwCacheFile.
| | |   
| | |   A	src/shogun/io/StreamingVwCacheFile.cpp
| | |   A	src/shogun/io/StreamingVwCacheFile.h
| | |    
* | | commit 079687806c814d0de310af8bce27e15b022afdc3
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Aug 10 22:39:39 2011 +0200
| | | 
| | |     fix further uninited warnings
| | | 
| | | M	src/shogun/distributions/HMM.cpp
| | | M	src/shogun/features/StringFeatures.h
| | | M	src/shogun/io/AsciiFile.cpp
| | | M	src/shogun/ui/GUIKernel.cpp
| | |      
* | |   commit 4c44f6bbc5f7a4b1b0dfd5ec74fd08e655550896
|\ \ \  Merge: 4eb1ae9 47bedcc
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Aug 10 22:38:28 2011 +0200
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |       
| * | |   commit 47bedccb72adcc7c6869253d3fa98e782aa5886c
| |\ \ \  Merge: 81af90d bc3f108
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Wed Aug 10 13:08:52 2011 -0700
| | | | | 
| | | | |     Merge pull request #284 from frx/streaming_vw
| | | | |     
| | | | |     Added StreamingVwFile.
| | | | |      
| | * | | commit bc3f1085db65c22882289f10368bfcc93f93d913
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Thu Aug 11 01:36:31 2011 +0530
| | | | | 
| | | | |     Improved another switch-case block in VwParser.
| | | | | 
| | | | | M	src/shogun/classifier/vw/VwParser.cpp
| | | | |      
| | * | | commit c59c21fb1bcb67a5c1f78471316c1b062b757097
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Thu Aug 11 01:33:28 2011 +0530
| | | | | 
| | | | |     Made the parser type switch statement handle cases better.
| | | | | 
| | | | | M	src/shogun/io/StreamingVwFile.cpp
| | | | |      
| | * | | commit 057b70bc527af2e40801c237f357a41c11481598
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Thu Aug 11 01:27:27 2011 +0530
| | | | | 
| | | | |     Modified StreamingFile to include VwExample read functions.
| | | | | 
| | | | | M	src/shogun/io/StreamingFile.cpp
| | | | | M	src/shogun/io/StreamingFile.h
| | | | |      
| | * | | commit cfb3f072219ed1917522df282a620b99507a8c89
| |/ / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | |   Date:   Thu Aug 11 01:21:29 2011 +0530
| | | |   
| | | |       Added StreamingVwFile.
| | | |   
| | | |   A	src/shogun/io/StreamingVwFile.cpp
| | | |   A	src/shogun/io/StreamingVwFile.h
| | | |     
* | | | commit 4eb1ae9fab104d9cf0185f732787e6acde456111
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Wed Aug 10 22:37:04 2011 +0200
| | |   
| | |       use unions to fix warnings w/ strict-aliasing on
| | |   
| | |   M	src/shogun/mathematics/Math.h
| | |    
* | | commit 81af90d3faefd1af7fbbf6418b328948750cb35f
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Aug 10 21:57:43 2011 +0200
| | | 
| | |     fix another g++ uninited warning
| | | 
| | | M	src/shogun/lib/DataType.cpp
| | |    
* | | commit 072dabc15b4e48be1a8680d9707a3ac3c4d4e1c3
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Aug 10 21:50:54 2011 +0200
| | | 
| | |     fix uninitialized variable warning
| | | 
| | | M	src/shogun/lib/DataType.cpp
| | |      
* | |   commit b75a9715b8564fd1dfb4c806df8fe8965fcb437c
|\ \ \  Merge: 70476d8 960471e
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Aug 10 11:57:06 2011 -0700
| | | | 
| | | |     Merge pull request #283 from frx/streaming_vw
| | | |     
| | | |     Replaced size_t with uint32_t in hash func typedef.
| | | |     
| * | | commit 960471e52d2c1e571f67410fbc588143db7cad60
|/ / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | |   Date:   Thu Aug 11 00:11:35 2011 +0530
| | |   
| | |       Replaced size_t with uint32_t in hash func typedef.
| | |   
| | |   M	src/shogun/classifier/vw/vw_common.h
| | |    
* | | commit 70476d87dc605f41ba59b3447fbec96d23743de5
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Aug 10 20:31:57 2011 +0200
| | | 
| | |     Revert "remove lib/versionstring.h on distclean"
| | |     
| | |     This reverts commit c8e5d1c767cd3f08adacdc84e204ed116e02d2ca.
| | |     
| | |     Releases contain lib/versionstring.h and this file is just once auto
| | |     generated before releases. So removing it in distclean will require to
| | |     unpack the tarball again -> not a good idea.
| | | 
| | | M	src/Makefile
| | |      
* | |   commit 10e769906f4d25e2d38e803a01fcc3424439285b
|\ \ \  Merge: c8e5d1c 6d51367
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Aug 10 20:24:19 2011 +0200
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |       
| * | |   commit 6d513678d3371aed9f6c4c24c45a1a5e7ba01e1a
| |\ \ \  Merge: 0e23718 0fbb00c
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Wed Aug 10 11:20:06 2011 -0700
| | | | | 
| | | | |     Merge pull request #282 from frx/streaming_vw
| | | | |     
| | | | |     Added VW parser class.
| | | | |      
| | * | | commit 0fbb00cc965be6ff0c2f5bd541ae31485fc36262
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Wed Aug 10 21:49:38 2011 +0530
| | | | | 
| | | | |     Conversion to SG_FREE in VW files.
| | | | | 
| | | | | M	src/shogun/classifier/vw/VwParser.cpp
| | | | | M	src/shogun/classifier/vw/vw_example.cpp
| | | | |      
| | * | | commit 39ce6ac0de346ed0bb42e30e5cf7c19601a42684
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Wed Aug 10 21:00:46 2011 +0530
| | | | | 
| | | | |     Added VW parser class.
| | | | | 
| | | | | A	src/shogun/classifier/vw/VwParser.cpp
| | | | | A	src/shogun/classifier/vw/VwParser.h
| | | | |        
| * | | |   commit 0e23718af106914b20d4947d6232badd50a6f399
| |\ \ \ \  Merge: ded0001 0be1f49
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Wed Aug 10 11:18:23 2011 -0700
| | | | | | 
| | | | | |     Merge pull request #281 from karlnapf/master
| | | | | |     
| | | | | |     serialization example
| | | | | |       
| | * | | | commit 0be1f49d3e04253e41e6fa444613924feb12c9fb
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Aug 10 15:53:58 2011 +0200
| | | | | | 
| | | | | |     added serialization example
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | |       
| | * | | | commit 495e76b62c701027696d545103a10a0ff19c2d2f
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Aug 10 15:52:20 2011 +0200
| | | | | | 
| | | | | |     added serialization example
| | | | | | 
| | | | | | A	examples/undocumented/libshogun/serialization_ascii.cpp
| | | | | |         
| * | | | |   commit ded0001a1087b691190a197f2aadc2c5b33912e6
| |\ \ \ \ \  Merge: b80677d 3bb29e2
| | | |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |/| | |   Date:   Wed Aug 10 05:14:53 2011 -0700
| | | | | |   
| | | | | |       Merge pull request #280 from frx/streaming_vw
| | | | | |       
| | | | | |       Added VW native cache read/write classes.
| | | | | |       
| | * | | | commit 3bb29e2ee79f1382986ad5775e2636f39a299edc
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Wed Aug 10 17:06:06 2011 +0530
| | | | | | 
| | | | | |     Made invsqrt inline.
| | | | | | 
| | | | | | M	src/shogun/mathematics/Math.h
| | | | | |       
| | * | | | commit 46b44a01b8b0f5237dfc036c2fbf729109e6caf2
| |/ / / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | |   Date:   Wed Aug 10 16:47:36 2011 +0530
| | | | |   
| | | | |       Added VW native cache read/write classes.
| | | | |       Modified v_array to use shogun functions.
| | | | |   
| | | | |   A	src/shogun/classifier/vw/cache/VwNativeCacheReader.cpp
| | | | |   A	src/shogun/classifier/vw/cache/VwNativeCacheReader.h
| | | | |   A	src/shogun/classifier/vw/cache/VwNativeCacheWriter.cpp
| | | | |   A	src/shogun/classifier/vw/cache/VwNativeCacheWriter.h
| | | | |   M	src/shogun/lib/v_array.h
| | | | |      
* | | | | commit c8e5d1c767cd3f08adacdc84e204ed116e02d2ca
|/ / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Wed Aug 10 20:24:00 2011 +0200
| | | |   
| | | |       remove lib/versionstring.h on distclean
| | | |   
| | | |   M	src/Makefile
| | | |       
* | | |   commit b80677d093c429d87fb7fbd16a2e25f3a7293702
|\ \ \ \  Merge: a861dd4 ab6daeb
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Wed Aug 10 03:56:12 2011 -0700
| | | |   
| | | |       Merge pull request #279 from frx/streaming_vw
| | | |       
| | | |       Added SG_ADD for VW learner base class.
| | | |     
| * | | commit ab6daeb4865912ddc40d37649a2e0f26e2f98376
|/ / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | |   Date:   Wed Aug 10 16:22:06 2011 +0530
| | |   
| | |       Added SG_ADD for VW learner base class.
| | |   
| | |   M	src/shogun/classifier/vw/VwLearner.h
| | |    
* | | commit a861dd4953659cb3002596367b0e19aee3ceb868
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Aug 10 07:50:32 2011 +0200
| | | 
| | |     remove illegal -Wimplicit from C++ compile flags
| | | 
| | | M	src/configure
| | |      
* | |   commit 7d75106d6619e13ecb779d869fe272633200613a
|\ \ \  Merge: 9f7d9d7 ded1eb0
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Tue Aug 9 22:49:18 2011 -0700
| | |   
| | |       Merge pull request #278 from sploving/master
| | |       
| | |       add some csharp examples
| | |    
| * | commit ded1eb0bc5b3742c7eb60b9c064260e30a49ff1b
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Wed Aug 10 13:06:08 2011 +0800
| | | 
| | |     add some csharp examples
| | | 
| | | A	examples/undocumented/csharp_modular/classifier_averaged_perceptron_modular.cs
| | | A	examples/undocumented/csharp_modular/distance_braycurtis_modular.cs
| | | A	examples/undocumented/csharp_modular/evaluation_contingencytableevaluation_modular.cs
| | | A	examples/undocumented/csharp_modular/features_simple_real_modular.cs
| | | A	examples/undocumented/csharp_modular/preprocessor_classicisomap_modular.cs
| | | A	examples/undocumented/csharp_modular/regression_krr_modular.cs
| | |      
* | |   commit 9f7d9d7e54fc2e8b8d0bdebee11574950c99ea26
|\ \ \  Merge: 259c1ec df09823
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Aug 9 21:36:38 2011 -0700
| | | | 
| | | |     Merge pull request #277 from frx/streaming_vw
| | | |     
| | | |     VW learners
| | | |     
| * | | commit df098234396b7e37b030cc3e9baab6e8474a1a07
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Wed Aug 10 06:30:10 2011 +0530
| | | | 
| | | |     Corrected types in remaining VW code.
| | | | 
| | | | M	src/shogun/classifier/vw/VwRegressor.cpp
| | | | M	src/shogun/classifier/vw/cache/VwCacheReader.cpp
| | | | M	src/shogun/classifier/vw/cache/VwCacheReader.h
| | | | M	src/shogun/classifier/vw/cache/VwCacheWriter.cpp
| | | | M	src/shogun/classifier/vw/cache/VwCacheWriter.h
| | | | M	src/shogun/classifier/vw/learners/VwAdaptiveLearner.cpp
| | | | M	src/shogun/classifier/vw/learners/VwNonAdaptiveLearner.cpp
| | | |     
| * | | commit e7c47d410cc3a2f83beadd85380a04352d350615
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Wed Aug 10 02:53:07 2011 +0530
| | | | 
| | | |     Added non adaptive learner for VW.
| | | | 
| | | | A	src/shogun/classifier/vw/learners/VwNonAdaptiveLearner.cpp
| | | | A	src/shogun/classifier/vw/learners/VwNonAdaptiveLearner.h
| | | |     
| * | | commit 2da6cdc9c479563afd2d5be54745164e9ab0f5d5
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Wed Aug 10 00:06:02 2011 +0530
| | | | 
| | | |     float type fixed at one more location.
| | | | 
| | | | M	src/shogun/mathematics/Math.h
| | | |     
| * | | commit e0855cede5636dddd81b4658441d234abda1d0a9
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Wed Aug 10 00:02:51 2011 +0530
| | | | 
| | | |     Changed type from float to float32_t for invsqrt.
| | | | 
| | | | M	src/shogun/classifier/vw/VwLearner.h
| | | | M	src/shogun/classifier/vw/learners/VwAdaptiveLearner.cpp
| | | | M	src/shogun/classifier/vw/learners/VwAdaptiveLearner.h
| | | | M	src/shogun/mathematics/Math.h
| | | |     
| * | | commit 73ed3455d1afbc8f8a77daa624628024b4213058
|/ / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | |   Date:   Tue Aug 9 16:37:35 2011 +0530
| | |   
| | |       Added VW Learner base class and adaptive learner implementation.
| | |       Added invsqrt to Math.h
| | |   
| | |   A	src/shogun/classifier/vw/VwLearner.h
| | |   A	src/shogun/classifier/vw/learners/VwAdaptiveLearner.cpp
| | |   A	src/shogun/classifier/vw/learners/VwAdaptiveLearner.h
| | |   M	src/shogun/mathematics/Math.h
| | |      
* | |   commit 259c1ec81b9bc3f480279b8c73153a622a33157d
|\ \ \  Merge: 4a52712 0a8043f
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Tue Aug 9 11:13:52 2011 -0700
| | |   
| | |       Merge pull request #276 from sploving/master
| | |       
| | |       add Load.cs and one kernel example
| | |    
| * | commit 0a8043fbbde22de40a7ce905289d4e45235ec15b
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Tue Aug 9 16:50:48 2011 +0800
| | | 
| | |     add kernel_gaussian_modular.cs example
| | | 
| | | A	examples/undocumented/csharp_modular/kernel_gaussian_modular.cs
| | |    
| * | commit 70c511389b126837c14bf43b382967df2229cc90
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Tue Aug 9 16:50:10 2011 +0800
| | | 
| | |     make check.sh work
| | | 
| | | M	examples/undocumented/csharp_modular/check.sh
| | |    
| * | commit c9982e980bceb3386d08a3fab43a065a76603d06
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Tue Aug 9 16:49:47 2011 +0800
| | | 
| | |     add csharp example file, Load.cs, which read data from files
| | | 
| | | A	examples/undocumented/csharp_modular/Load.cs
| | |      
* | |   commit 4a52712eb9c78222a52d2e76de84b64491f57c6e
|\ \ \  Merge: f0ded6a aabcea9
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Aug 9 11:12:55 2011 -0700
| | | | 
| | | |     Merge pull request #272 from karlnapf/master
| | | |     
| | | |     Initial Parameter map implementation
| | | |     
| * | | commit aabcea9850d7dccea61e841e26e81f5965008109
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 9 16:35:16 2011 +0200
| | | | 
| | | |     removed old example
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | |     
| * | | commit 2a5fe6bad37c581d7ff35562d13ffe59de3acc3b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 9 16:30:06 2011 +0200
| | | | 
| | | |     applied changes in parameter map to example
| | | | 
| | | | M	examples/undocumented/libshogun/base_parameter_map.cpp
| | | |     
| * | | commit 3919c8b15e86ad4f3bf7ec8b5b033b53f7f68789
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 9 16:29:30 2011 +0200
| | | | 
| | | |     -base constructor calls
| | | |     -array is now kept sorted, get is done via binary search, added finalize method
| | | | 
| | | | M	src/shogun/base/ParameterMap.cpp
| | | | M	src/shogun/base/ParameterMap.h
| | | |     
| * | | commit 3dfb69d61c8cb7e4777e19afc87e9773f0a1741d
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 9 16:28:53 2011 +0200
| | | | 
| | | |     -removed some unneccessary methods
| | | |     -added get_array()
| | | |     -spelling mistakes in documentation
| | | | 
| | | | M	src/shogun/lib/DynamicObjectArray.h
| | | |     
| * | | commit a6ef21752ed0fc94ebdc9d2b67d4ee8722d6f2f4
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 9 16:28:20 2011 +0200
| | | | 
| | | |     added qsort and binary search for arrays of pointers
| | | | 
| | | | M	src/shogun/mathematics/Math.h
| | | |     
| * | | commit daa60dc536f5f43aef3addedaaab34418a6d3322
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 9 12:41:00 2011 +0200
| | | | 
| | | |     added parameter version magic
| | | | 
| | | | M	src/.version.sh
| | | |     
| * | | commit 1f87722a4a01826d41897251e6b3e8e5cfb8993b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 9 12:40:48 2011 +0200
| | | | 
| | | |     -added kernel
| | | |     -added parameter version info (needed by .version.sh script for parameter version)
| | | | 
| | | | M	src/NEWS
| | | |     
| * | | commit c0f50b4b5173b48618bdd66e1aa2f2958a887d34
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Aug 8 19:17:30 2011 +0200
| | | | 
| | | |     more work towards saving/loading parameter version
| | | | 
| | | | M	src/shogun/base/SGObject.cpp
| | | | M	src/shogun/base/SGObject.h
| | | |     
| * | | commit b5d1da61535b0a3fcc083806427132a3a9b1842a
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Aug 8 16:52:47 2011 +0200
| | | | 
| | | |     VERSION_PARAMETER is now an integer
| | | | 
| | | | M	src/.version.sh
| | | |     
| * | | commit e552ef2f00f5904adfb4cd64925d495f3cebff59
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Aug 8 16:51:20 2011 +0200
| | | | 
| | | |     added parameter version
| | | | 
| | | | M	src/.version.sh
| | | |       
| * | |   commit 5e580c0ac07361cfe57f53fbbe3b731c1d76a7dd
| |\ \ \  Merge: 16f81e5 e484bd2
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 8 16:36:34 2011 +0200
| | | | | 
| | | | |     Merge branch 'master' of github.com:karlnapf/shogun
| | | | |        
| | * | |   commit e484bd2d888de2f53b644747818f76fc54fa0a09
| | |\ \ \  Merge: c7ea005 0db0870
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Aug 8 13:51:50 2011 +0200
| | | | | | 
| | | | | |     Merge branch 'master' of github.com:karlnapf/shogun
| | | | | |     
| | | | | |     Conflicts:
| | | | | |     	examples/undocumented/libshogun/Makefile
| | | | | |       
| | | * | | commit 0db08709aa89d6c77dce437cabc318e1e3144b5e
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 17:34:21 2011 +0200
| | | | | | 
| | | | | |     added documentation
| | | | | | 
| | | | | | M	src/shogun/lib/StringMap.h
| | | | | |       
| | | * | | commit de4b523c6ffc3b2eb211b0d3f1b2fa4fbb7568b8
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 17:27:40 2011 +0200
| | | | | | 
| | | | | |     added stringmap example/test
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | | A	examples/undocumented/libshogun/library_stringmap.cpp
| | | | | |       
| | | * | | commit bd802e7eeaafaf641df28d027e5a27c4367d9b70
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 17:27:18 2011 +0200
| | | | | | 
| | | | | |     added stringmap implementation
| | | | | | 
| | | | | | A	src/shogun/lib/StringMap.cpp
| | | | | | A	src/shogun/lib/StringMap.h
| | | | | |       
| | * | | | commit c7ea005dd4d7db5180019ca63f4681af417f6742
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Aug 8 13:35:36 2011 +0200
| | | | | | 
| | | | | |     added parameter map example
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | |       
| | * | | | commit 71c76c242524cc0ec3dd15d7cac600957c36454d
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Aug 8 13:34:38 2011 +0200
| | | | | | 
| | | | | |     added type information to parameter map and applied changes to example
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/base_parameter_map.cpp
| | | | | | M	src/shogun/base/ParameterMap.cpp
| | | | | | M	src/shogun/base/ParameterMap.h
| | | | | |       
| | * | | | commit 48e1b761e71cec302942dde0b7ec06e582899849
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Aug 8 11:18:09 2011 +0200
| | | | | | 
| | | | | |     added CParameterMap class and an example how to use it
| | | | | | 
| | | | | | A	examples/undocumented/libshogun/base_parameter_map.cpp
| | | | | | A	src/shogun/base/ParameterMap.cpp
| | | | | | A	src/shogun/base/ParameterMap.h
| | | | | |       
| | * | | | commit 62565978914947e43fee2c48f42226605ecb9c7e
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Aug 8 11:17:31 2011 +0200
| | | | | | 
| | | | | |     removed file
| | | | | | 
| | | | | | D	examples/undocumented/libshogun/library_stringmap.cpp
| | | | | |       
| | * | | | commit c2ffb6a7703dcc660863b88183daf836489c1303
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Sat Aug 6 16:42:10 2011 +0200
| | | | | | 
| | | | | |     removed StringMap file
| | | | | | 
| | | | | | D	src/shogun/lib/StringMap.cpp
| | | | | | D	src/shogun/lib/StringMap.h
| | | | | |       
| | * | | | commit 6d733fd06d4290ef2bac186b99b2f25ec70d6f03
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 17:34:21 2011 +0200
| | | | | | 
| | | | | |     added documentation
| | | | | | 
| | | | | | M	src/shogun/lib/StringMap.h
| | | | | |       
| | * | | | commit 8c0d140eb2b0e365e96df7fde074446e1f0514a0
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 17:27:40 2011 +0200
| | | | | | 
| | | | | |     added stringmap example/test
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | | A	examples/undocumented/libshogun/library_stringmap.cpp
| | | | | |       
| | * | | | commit a3894fb60bc6c75bbbf71c22991011eb1830c7b4
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 17:27:18 2011 +0200
| | | | | | 
| | | | | |     added stringmap implementation
| | | | | | 
| | | | | | A	src/shogun/lib/StringMap.cpp
| | | | | | A	src/shogun/lib/StringMap.h
| | | | | |       
| * | | | | commit 16f81e58c9f3217db557f1f362430dc9c43dbef4
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Aug 8 16:21:47 2011 +0200
| | | | | | 
| | | | | |     added version parameter (is also saved automatically)
| | | | | | 
| | | | | | M	src/shogun/base/SGObject.cpp
| | | | | | M	src/shogun/base/Version.cpp
| | | | | | M	src/shogun/base/Version.h
| | | | | |       
| * | | | | commit aff587f2c190086082c4568ad350d7429549000d
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Aug 8 13:35:36 2011 +0200
| | | | | | 
| | | | | |     added parameter map example
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | |       
| * | | | | commit d6f12055d738bbc141ea54a9dbf7514e6d84984a
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Aug 8 13:34:38 2011 +0200
| | | | | | 
| | | | | |     added type information to parameter map and applied changes to example
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/base_parameter_map.cpp
| | | | | | M	src/shogun/base/ParameterMap.cpp
| | | | | | M	src/shogun/base/ParameterMap.h
| | | | | |       
| * | | | | commit ce411f7c50f793fad97555d0d0d7bf5d1a338b10
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Aug 8 11:18:09 2011 +0200
| | | | | | 
| | | | | |     added CParameterMap class and an example how to use it
| | | | | | 
| | | | | | A	examples/undocumented/libshogun/base_parameter_map.cpp
| | | | | | A	src/shogun/base/ParameterMap.cpp
| | | | | | A	src/shogun/base/ParameterMap.h
| | | | | |       
| * | | | | commit a7e076fea736da2c5f7e5122d846a9cdc68d4874
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Aug 8 11:17:31 2011 +0200
| | | | | | 
| | | | | |     removed file
| | | | | | 
| | | | | | D	examples/undocumented/libshogun/library_stringmap.cpp
| | | | | |       
| * | | | | commit 89ca0a11a48baa177996a0c6ced17f930dc17db8
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 17:27:18 2011 +0200
| | | | | | 
| | | | | |     added stringmap implementation
| | | | | | 
| | | | | | D	src/shogun/lib/StringMap.cpp
| | | | | | D	src/shogun/lib/StringMap.h
| | | | | |       
| * | | | | commit 16c813f9bde9b66ddd70931bdf51b132f1cb4b85
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 17:34:21 2011 +0200
| | | | | | 
| | | | | |     added documentation
| | | | | | 
| | | | | | M	src/shogun/lib/StringMap.h
| | | | | |       
| * | | | | commit b7f378c854b3a62de9e6229d4d72544177b7bf21
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 17:27:40 2011 +0200
| | | | | | 
| | | | | |     added stringmap example/test
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | | A	examples/undocumented/libshogun/library_stringmap.cpp
| | | | | |       
| * | | | | commit 7c2d8653ae847fedefc9c25bcdaa01c5bc835832
| |/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | |   Date:   Fri Aug 5 17:27:18 2011 +0200
| | | | |   
| | | | |       added stringmap implementation
| | | | |   
| | | | |   A	src/shogun/lib/StringMap.cpp
| | | | |   A	src/shogun/lib/StringMap.h
| | | | |        
* | | | |   commit f0ded6af55dc347aa86b3caf0b2f30c155cea8cd
|\ \ \ \ \  Merge: c5d48a9 b71e4f8
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Tue Aug 9 03:31:29 2011 -0700
| | | | | | 
| | | | | |     Merge pull request #273 from frx/streaming_vw
| | | | | |     
| | | | | |     Added VW hash functions.
| | | | | |       
| * | | | | commit b71e4f8baa42b03b6ced2d9104bd2ea78a6e3135
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Tue Aug 9 05:13:49 2011 +0530
| | | | | | 
| | | | | |     Added vw cache read/write base classes.
| | | | | | 
| | | | | | A	src/shogun/classifier/vw/cache/VwCacheReader.cpp
| | | | | | A	src/shogun/classifier/vw/cache/VwCacheReader.h
| | | | | | A	src/shogun/classifier/vw/cache/VwCacheWriter.cpp
| | | | | | A	src/shogun/classifier/vw/cache/VwCacheWriter.h
| | | | | |       
| * | | | | commit 80506fa5ba3c492649d6a76207dcfd97384e530d
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Tue Aug 9 03:19:38 2011 +0530
| | | | | | 
| | | | | |     Added hash_base to vw_common.h
| | | | | | 
| | | | | | M	src/shogun/classifier/vw/vw_common.h
| | | | | |       
| * | | | | commit 58abe28a681a2854e5aab5b1ce62fdd9bc10634a
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Tue Aug 9 03:06:36 2011 +0530
| | | | | | 
| | | | | |     Added missing header file in Hash.cpp
| | | | | | 
| | | | | | M	src/shogun/lib/Hash.cpp
| | | | | |       
| * | | | | commit ff557318dd2666a9ebc711fe433c2d86807167f8
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Tue Aug 9 03:00:23 2011 +0530
| | | | | | 
| | | | | |     Moved hashstring to lib/Hash
| | | | | | 
| | | | | | D	src/shogun/classifier/vw/hash.cpp
| | | | | | D	src/shogun/classifier/vw/hash.h
| | | | | | M	src/shogun/lib/Hash.cpp
| | | | | | M	src/shogun/lib/Hash.h
| | | | | |       
| * | | | | commit 55cc4276eaa514959f2eb78a7b106d1a80660dab
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Tue Aug 9 01:50:33 2011 +0530
| | | | | | 
| | | | | |     Added VW hash functions.
| | | | | | 
| | | | | | A	src/shogun/classifier/vw/hash.cpp
| | | | | | A	src/shogun/classifier/vw/hash.h
| | | | | |         
* | | | | |   commit c5d48a935b3403dcfe55b90688c430389f799f95
|\ \ \ \ \ \  Merge: 63e6105 fca3318
| |/ / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | | |   Date:   Tue Aug 9 02:56:00 2011 -0700
| | | | | |   
| | | | | |       Merge pull request #274 from serialhex/master
| | | | | |       
| | | | | |       auto translated python -> ruby examples
| | | | | |       
| * | | | | commit fca33186dab4d022324cdf9198fd5a871d11bd7e
| | | | | | Author: Justin Patera <serialhex@gmail.com>
| | | | | | Date:   Tue Aug 9 00:41:04 2011 -0400
| | | | | | 
| | | | | |     last commit didn't work too well. most of the examples fail, but that is to be expected.
| | | | | |     need to fix & get the examples running right... fun!
| | | | | | 
| | | | | | M	examples/undocumented/ruby_modular/classifier_custom_kernel_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_domainadaptationsvm_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_gaussiannaivebayes_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_gmnpsvm_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_gpbtsvm_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_knn_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_larank_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_lda_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_liblinear_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_libsvm_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_libsvmmulticlass_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_libsvmoneclass_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_mpdsvm_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_perceptron_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_subgradientsvm_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_svmlight_batch_linadd_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_svmlight_linear_term_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_svmlight_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_svmlin_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_svmocas_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_svmsgd_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/clustering_gmm_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/clustering_hierarchical_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/clustering_kmeans_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_braycurtis_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_canberra_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_canberraword_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_chebyshew_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_chisquare_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_cosine_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_euclidian_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_geodesic_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_hammingword_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_jensen_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_manhatten_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_manhattenword_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_minkowski_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_normsquared_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_sparseeuclidean_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_tanimoto_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distribution_histogram_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distribution_hmm_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distribution_linearhmm_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distribution_ppwm_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/evaluation_contingencytableevaluation_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/evaluation_meansquarederror_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/evaluation_multiclassaccuracy_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/evaluation_prcevaluation_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/evaluation_rocevaluation_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_io_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_read_svmlight_format_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_simple_byte_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_simple_longint_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_simple_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_simple_real_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_snp_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_sparse_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_string_char_compressed_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_string_char_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_string_file_char_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_string_file_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_string_hashed_wd_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_string_sliding_window_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_string_ulong_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_string_word_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_anova_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_auc_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_cauchy_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_chi2_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_circular_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_combined_custom_poly_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_combined_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_const_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_custom_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_diag_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_distance_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_distantsegments_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_exponential_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_fisher_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_fixed_degree_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_gaussian_shift_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_histogram_word_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_inversemultiquadric_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_io_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_linear_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_linear_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_local_alignment_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_locality_improved_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_log_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_match_word_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_multiquadric_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_oligo_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_poly_match_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_poly_match_word_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_poly_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_power_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_rationalquadratic_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_salzberg_word_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_sigmoid_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_simple_locality_improved_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_sparse_gaussian_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_sparse_linear_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_sparse_poly_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_spherical_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_spline_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_top_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_tstudent_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_wavelet_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_weighted_comm_word_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_weighted_degree_position_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_weighted_degree_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/library_fisher2x3_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/mkl_binclass_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/mkl_multiclass_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/modelselection_grid_search_linear_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/modelselection_parameter_tree_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_classicisomap_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_classicmds_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_hessianlocallylinearembedding_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_kernelpcacut_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_landmarkisomap_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_landmarkmds_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_laplacianeigenmaps_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_locallylinearembedding_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_localtangentspacealignment_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_logplusone_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_normone_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_pca_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_prunevarsubmean_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_randomfouriergausspreproc_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_sortulongstring_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_sortwordstring_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/regression_krr_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/regression_libsvr_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/regression_svrlight_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/serialization_complex_example.rb
| | | | | | M	examples/undocumented/ruby_modular/serialization_matrix_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/serialization_svmlight_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/structure_dynprog_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/tests_check_commwordkernel_memleak_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/trancekoder.rb
| | | | | |       
| * | | | | commit e81612c98c7b425016d76926200044341ec00575
| | | | | | Author: Justin Patera <serialhex@gmail.com>
| | | | | | Date:   Mon Aug 8 23:54:22 2011 -0400
| | | | | | 
| | | | | |     used an automated program to translate shogun examples in python to ruby.
| | | | | |     most of them work, but may need to be cleaned up & prettified.
| | | | | |     that is stage 2...
| | | | | | 
| | | | | | A	examples/undocumented/ruby_modular/classifier_averaged_perceptron_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_custom_kernel_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_domainadaptationsvm_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_gaussiannaivebayes_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_gmnpsvm_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_gpbtsvm_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_knn_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_larank_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_lda_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_liblinear_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_libsvm_minimal_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_libsvm_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_libsvmmulticlass_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_libsvmoneclass_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_mpdsvm_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_perceptron_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_subgradientsvm_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_svmlight_batch_linadd_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_svmlight_linear_term_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_svmlight_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_svmlin_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_svmocas_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_svmsgd_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/clustering_gmm_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/clustering_hierarchical_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/clustering_kmeans_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_braycurtis_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_canberra_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_canberraword_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_chebyshew_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_chisquare_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_cosine_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_euclidian_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_geodesic_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_hammingword_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_jensen_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_manhatten_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_manhattenword_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_minkowski_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_normsquared_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_sparseeuclidean_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_tanimoto_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distribution_histogram_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distribution_hmm_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distribution_linearhmm_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distribution_ppwm_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/evaluation_contingencytableevaluation_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/evaluation_meansquarederror_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/evaluation_multiclassaccuracy_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/evaluation_prcevaluation_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/evaluation_rocevaluation_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_io_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_read_svmlight_format_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_simple_byte_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_simple_longint_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_simple_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_simple_real_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_snp_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_sparse_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_string_char_compressed_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_string_char_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_string_file_char_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_string_file_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_string_hashed_wd_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_string_sliding_window_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_string_ulong_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_string_word_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_anova_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_auc_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_cauchy_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_chi2_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_circular_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_combined_custom_poly_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_combined_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_const_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_custom_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_diag_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_distance_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_distantsegments_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_exponential_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_fisher_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_fixed_degree_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_gaussian_shift_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_histogram_word_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_inversemultiquadric_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_io_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_linear_byte_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_linear_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_linear_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_local_alignment_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_locality_improved_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_log_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_match_word_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_multiquadric_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_oligo_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_poly_match_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_poly_match_word_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_poly_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_power_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_rationalquadratic_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_salzberg_word_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_sigmoid_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_simple_locality_improved_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_sparse_gaussian_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_sparse_linear_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_sparse_poly_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_spherical_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_spline_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_top_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_tstudent_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_wave_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_wavelet_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_weighted_comm_word_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_weighted_degree_position_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_weighted_degree_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/library_fisher2x3_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/mkl_binclass_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/mkl_multiclass_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/modelselection_grid_search_linear_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/modelselection_parameter_tree_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_classicisomap_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_classicmds_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_hessianlocallylinearembedding_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_kernelpcacut_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_landmarkisomap_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_landmarkmds_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_laplacianeigenmaps_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_locallylinearembedding_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_localtangentspacealignment_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_logplusone_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_normone_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_pca_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_prunevarsubmean_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_randomfouriergausspreproc_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_sortulongstring_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_sortwordstring_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/regression_krr_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/regression_libsvr_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/regression_svrlight_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/serialization_complex_example.rb
| | | | | | A	examples/undocumented/ruby_modular/serialization_matrix_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/serialization_svmlight_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/shogun_helpers.rb
| | | | | | A	examples/undocumented/ruby_modular/structure_dynprog_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/tests_check_commwordkernel_memleak_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/trancekoder.rb
| | | | | |       
| * | | | | commit 382c407f3f94b1c0d24322c299f6214ca3fb58ea
|/ / / / /  Author: Justin Patera <serialhex@gmail.com>
| | | | |   Date:   Sun Aug 7 18:26:23 2011 -0400
| | | | |   
| | | | |       changed 'print' to 'puts' for more idiomatic & nicer-looking ruby
| | | | |   
| | | | |   M	examples/undocumented/ruby_modular/kernel_comm_ulong_string_modular.rb
| | | | |   M	examples/undocumented/ruby_modular/kernel_comm_word_string_modular.rb
| | | | |   M	examples/undocumented/ruby_modular/kernel_gaussian_modular.rb
| | | | |   M	examples/undocumented/ruby_modular/kernel_linear_byte_modular.rb
| | | | |   M	examples/undocumented/ruby_modular/kernel_linear_word_modular.rb
| | | | |        
| | | | *   commit 26d1e8bef53ef1099c94300e50714d041721271e
| | | | |\  Merge: 82733a7 63e6105
| |_|_|_|/  Author: Evgeniy Andreev <gsomix@gmail.com>
|/| | | |   Date:   Tue Aug 9 13:05:11 2011 +0400
| | | | |   
| | | | |       Merge branch 'master' of git://github.com/shogun-toolbox/shogun
| | | | |      
* | | | | commit 63e61051c7bb68747a5dcd3e1e699a1d53ebbbcc
|/ / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | |   Date:   Tue Aug 9 00:21:41 2011 +0400
| | | |   
| | | |       Fixed wrong attempt to reuse matrix while DSYEVR is called
| | | |   
| | | |   M	src/shogun/preprocessor/ClassicMDS.cpp
| | | |     
* | | | commit 96ef7398573f8f45d520cc16b149906acc6925b7
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Aug 8 13:20:03 2011 +0200
| | | | 
| | | |     fix make clean/distclean targets
| | | | 
| | | | M	src/Makefile
| | | |       
* | | |   commit 8e9019aebd6288c2713d88e5c874b5ccdbaed723
|\ \ \ \  Merge: 8730565 b49b72d
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Aug 8 04:19:11 2011 -0700
| | | | | 
| | | | |     Merge pull request #270 from frx/streaming_vw
| | | | |     
| | | | |     VW classes are now mostly SGObjects
| | | | |      
| * | | | commit b49b72d1794692586166fa7acf43b53aca8af39c
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Mon Aug 8 16:27:48 2011 +0530
| | | | | 
| | | | |     Used realloc for get_vector_and_label in StreamingAsciiFile.
| | | | | 
| | | | | M	src/shogun/features/StreamingSimpleFeatures.h
| | | | | M	src/shogun/io/StreamingAsciiFile.cpp
| | | | |      
| * | | | commit 28b84c287efc09c8f567d2b75568582e67ac1abc
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Mon Aug 8 06:00:41 2011 +0530
| | | | | 
| | | | |     Added base class constructor calls to VwRegressor.
| | | | | 
| | | | | M	src/shogun/classifier/vw/VwRegressor.cpp
| | | | |      
| * | | | commit bcbdb859c09a5c532adb278420011b22f3a990f5
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Mon Aug 8 05:58:03 2011 +0530
| | | | | 
| | | | |     Made VW environment and regressor SGObjects.
| | | | | 
| | | | | A	src/shogun/classifier/vw/VwEnvironment.cpp
| | | | | A	src/shogun/classifier/vw/VwEnvironment.h
| | | | | A	src/shogun/classifier/vw/VwRegressor.cpp
| | | | | A	src/shogun/classifier/vw/VwRegressor.h
| | | | | M	src/shogun/classifier/vw/vw_common.h
| | | | | D	src/shogun/classifier/vw/vw_environment.cpp
| | | | | D	src/shogun/classifier/vw/vw_environment.h
| | | | | D	src/shogun/classifier/vw/vw_regressor.cpp
| | | | | D	src/shogun/classifier/vw/vw_regressor.h
| | | | |        
* | | | |   commit 873056520059f8be7ca26c6472554fe9bcd70114
|\ \ \ \ \  Merge: 015de5a 1c777b2
| |/ / / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | / /   Date:   Mon Aug 8 04:14:06 2011 -0700
| | |/ /    
| |/| |         Merge pull request #271 from sploving/master
| | | |         
| | | |         support csharp SGVector and SGMatrix and add two examples: VectorTest.cs and MatrixTest.cs
| | | |     
| * | | commit 1c777b2dde43c62c7af03ff12c5d15c07167e536
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Sun Aug 7 21:53:15 2011 +0800
| | | | 
| | | |     make matrix work
| | | | 
| | | | A	examples/undocumented/csharp_modular/MatrixTest.cs
| | | | M	src/interfaces/csharp_modular/swig_typemaps.i
| | | |     
| * | | commit f64984f7b6b89dcd3b365a4d54f1a7a1da697af1
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Sun Aug 7 18:37:44 2011 +0800
| | | | 
| | | |     make SGVector work well
| | | | 
| | | | M	examples/undocumented/csharp_modular/VectorTest.cs
| | | | M	src/interfaces/csharp_modular/swig_typemaps.i
| | | |     
* | | | commit 015de5ab8e15c885fd4827b63b1c5be82dd836db
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Mon Aug 8 06:24:27 2011 +0400
| | | | 
| | | |     Fixed runtime error with LLE
| | | | 
| | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | |     
* | | | commit b44191d9c6fef26c856fb36f9a477795937da254
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Mon Aug 8 06:22:09 2011 +0400
| | | | 
| | | |     Made ARPACK residual vector non-random
| | | | 
| | | | M	src/shogun/mathematics/arpack.cpp
| | | |     
* | | | commit 2ab04b100c987feb25df29bae648c89c31362cd0
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Mon Aug 8 03:18:12 2011 +0400
| | | | 
| | | |     Fixed wrong attempt to reuse matrix when LAPACK is used in LLE null space finding
| | | | 
| | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | |       
* | | |   commit 3f165e8045c51318efcea341e69c9454143cf0aa
|\ \ \ \  Merge: c6dc26b 85a0cd9
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Aug 8 03:16:39 2011 +0400
| | | | | 
| | | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | | |        
| * | | |   commit 85a0cd9a4eb8dcccf5bf4f16af41f709442e903f
| |\ \ \ \  Merge: 62a3f25 a266704
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Sun Aug 7 15:10:52 2011 -0700
| | | | | | 
| | | | | |     Merge pull request #268 from frx/streaming_vw
| | | | | |     
| | | | | |     Restructured vw class definitions
| | | | | |       
| | * | | | commit a26670480737ce519bd4374498e2148ad075b17a
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sun Aug 7 20:48:47 2011 +0530
| | | | | | 
| | | | | |     Added num_passes in vw environment.
| | | | | | 
| | | | | | M	src/shogun/classifier/vw/vw_environment.cpp
| | | | | | M	src/shogun/classifier/vw/vw_environment.h
| | | | | |       
| | * | | | commit ffa136a7b726731caef64d86c28dcdae95e64ddb
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sun Aug 7 17:33:42 2011 +0530
| | | | | | 
| | | | | |     Replaced ambiguous name 'constant' with 'constant_hash'
| | | | | | 
| | | | | | M	src/shogun/classifier/vw/vw_common.h
| | | | | |       
| | * | | | commit 17b23e158a9fd97384aaa666a90fa81e256e7859
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sun Aug 7 17:25:48 2011 +0530
| | | | | | 
| | | | | |     Added buf_read and buf_write to IOBuffer.
| | | | | |     Replaced string and vector in VW to use shogun compatible types.
| | | | | | 
| | | | | | M	src/shogun/classifier/vw/vw_common.h
| | | | | | M	src/shogun/classifier/vw/vw_environment.h
| | | | | | M	src/shogun/classifier/vw/vw_example.cpp
| | | | | | M	src/shogun/classifier/vw/vw_example.h
| | | | | | M	src/shogun/io/IOBuffer.cpp
| | | | | | M	src/shogun/io/IOBuffer.h
| | | | | |       
| | * | | | commit 3289391050050761bc8c498739fabf03fa6dc03b
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sun Aug 7 03:04:00 2011 +0530
| | | | | | 
| | | | | |     Moved substring to SGIO.h
| | | | | | 
| | | | | | D	src/shogun/classifier/vw/substring.h
| | | | | | M	src/shogun/classifier/vw/vw_common.h
| | | | | | M	src/shogun/classifier/vw/vw_label.h
| | | | | | M	src/shogun/io/SGIO.h
| | | | | |       
| | * | | | commit 341574afb1c621f570c4d138bfbc6269ced059ce
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sat Aug 6 18:31:51 2011 +0530
| | | | | | 
| | | | | |     Further type conversion from vw to shogun types.
| | | | | | 
| | | | | | M	src/shogun/classifier/vw/substring.h
| | | | | | M	src/shogun/classifier/vw/vw_common.h
| | | | | | M	src/shogun/classifier/vw/vw_environment.h
| | | | | |       
| | * | | | commit 9ed41bdca4c4efa39f9ccbdb45bdc4c54318418c
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sat Aug 6 18:20:02 2011 +0530
| | | | | | 
| | | | | |     Replaced double with float64_t in vw
| | | | | | 
| | | | | | M	src/shogun/classifier/vw/vw_environment.h
| | | | | |       
| | * | | | commit 487574c2cb860299ae8c0185287daca5c014853f
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sat Aug 6 18:14:53 2011 +0530
| | | | | | 
| | | | | |     Replaced size_t with index_t for vw files.
| | | | | | 
| | | | | | M	src/shogun/classifier/vw/substring.h
| | | | | | M	src/shogun/classifier/vw/vw_common.h
| | | | | | M	src/shogun/classifier/vw/vw_environment.h
| | | | | | M	src/shogun/classifier/vw/vw_example.cpp
| | | | | | M	src/shogun/classifier/vw/vw_example.h
| | | | | | M	src/shogun/classifier/vw/vw_label.h
| | | | | | M	src/shogun/classifier/vw/vw_regressor.cpp
| | | | | | M	src/shogun/classifier/vw/vw_regressor.h
| | | | | |       
| | * | | | commit f1a8c8b10c33faf0c4c0d628579daca8cf186ea8
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sat Aug 6 18:02:25 2011 +0530
| | | | | | 
| | | | | |     Changed an include file in substring.
| | | | | | 
| | | | | | M	src/shogun/classifier/vw/substring.h
| | | | | |       
| | * | | | commit 899f28b97def0ac4b2f0585eda8fb1dfdcc3ebe8
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sat Aug 6 17:58:23 2011 +0530
| | | | | | 
| | | | | |     Replaced include paths for vw
| | | | | | 
| | | | | | M	src/shogun/classifier/vw/substring.h
| | | | | | M	src/shogun/classifier/vw/vw_common.h
| | | | | | M	src/shogun/classifier/vw/vw_environment.cpp
| | | | | | M	src/shogun/classifier/vw/vw_example.cpp
| | | | | | M	src/shogun/classifier/vw/vw_example.h
| | | | | | M	src/shogun/classifier/vw/vw_label.cpp
| | | | | | M	src/shogun/classifier/vw/vw_label.h
| | | | | | M	src/shogun/classifier/vw/vw_regressor.cpp
| | | | | | M	src/shogun/classifier/vw/vw_regressor.h
| | | | | |       
| | * | | | commit aecb4e006fa644b2298915e077486f6358125e4a
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sat Aug 6 17:56:16 2011 +0530
| | | | | | 
| | | | | |     Moved to vw/
| | | | | | 
| | | | | | A	src/shogun/classifier/vw/substring.h
| | | | | | A	src/shogun/classifier/vw/vw_common.h
| | | | | | A	src/shogun/classifier/vw/vw_environment.cpp
| | | | | | A	src/shogun/classifier/vw/vw_environment.h
| | | | | | A	src/shogun/classifier/vw/vw_example.cpp
| | | | | | A	src/shogun/classifier/vw/vw_example.h
| | | | | | A	src/shogun/classifier/vw/vw_label.cpp
| | | | | | A	src/shogun/classifier/vw/vw_label.h
| | | | | | A	src/shogun/classifier/vw/vw_regressor.cpp
| | | | | | A	src/shogun/classifier/vw/vw_regressor.h
| | | | | | D	src/shogun/lib/vw/substring.h
| | | | | | D	src/shogun/lib/vw/vw_common.h
| | | | | | D	src/shogun/lib/vw/vw_environment.cpp
| | | | | | D	src/shogun/lib/vw/vw_environment.h
| | | | | | D	src/shogun/lib/vw/vw_example.cpp
| | | | | | D	src/shogun/lib/vw/vw_example.h
| | | | | | D	src/shogun/lib/vw/vw_label.cpp
| | | | | | D	src/shogun/lib/vw/vw_label.h
| | | | | | D	src/shogun/lib/vw/vw_regressor.cpp
| | | | | | D	src/shogun/lib/vw/vw_regressor.h
| | | | | |       
| | * | | | commit 9f27da2109da1eeaac7fc544c75ea9f43a789fc0
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sat Aug 6 17:35:10 2011 +0530
| | | | | | 
| | | | | |     Split vw_types into separate header files.
| | | | | | 
| | | | | | A	src/shogun/lib/vw/vw_common.h
| | | | | | A	src/shogun/lib/vw/vw_environment.cpp
| | | | | | A	src/shogun/lib/vw/vw_environment.h
| | | | | | A	src/shogun/lib/vw/vw_example.cpp
| | | | | | A	src/shogun/lib/vw/vw_example.h
| | | | | | A	src/shogun/lib/vw/vw_label.cpp
| | | | | | A	src/shogun/lib/vw/vw_label.h
| | | | | | A	src/shogun/lib/vw/vw_regressor.cpp
| | | | | | A	src/shogun/lib/vw/vw_regressor.h
| | | | | | D	src/shogun/lib/vw/vw_types.h
| | | | | |       
| | * | | | commit 80833c61711172951e208678627fb125c1cf911a
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Fri Aug 5 21:18:55 2011 +0530
| | | | | | 
| | | | | |     Added VW substring header file.
| | | | | | 
| | | | | | A	src/shogun/lib/vw/substring.h
| | | | | | M	src/shogun/lib/vw/vw_types.h
| | | | | |       
| | * | | | commit e9a8bf2ef5bb124a42f540c3994fd072d690fa3b
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Fri Aug 5 18:54:30 2011 +0530
| | | | | | 
| | | | | |     Further cleaning up of vw_types.h
| | | | | | 
| | | | | | M	src/shogun/lib/vw/vw_types.h
| | | | | |       
| | * | | | commit 1a26a74d4dbe47f711efb7da7055a5e34ed49429
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Fri Aug 5 18:43:27 2011 +0530
| | | | | | 
| | | | | |     Added vw_types.h with cleaning up.
| | | | | | 
| | | | | | M	src/shogun/lib/vw/vw_types.h
| | | | | |       
| | * | | | commit d6b6982a68e4553a79af71a7160f5ee0e9d11985
| |/ / / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | |   Date:   Fri Aug 5 17:38:01 2011 +0530
| | | | |   
| | | | |       Added vw folder.
| | | | |   
| | | | |   A	src/shogun/lib/vw/vw_types.h
| | | | |      
* | | | | commit c6dc26ba7497acfd612e3a781c2419d0418773ec
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Aug 7 16:58:32 2011 +0400
| | | | | 
| | | | |     Fixed memleak in HLLE
| | | | | 
| | | | | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | | | |      
* | | | | commit e85f90c734c815a19e1b34b21f17df020b9ed0e5
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Aug 7 16:57:01 2011 +0400
| | | | | 
| | | | |     Fixed wrong order of SG_FREE in ClassicMDS
| | | | | 
| | | | | M	src/shogun/preprocessor/ClassicMDS.cpp
| | | | |      
* | | | | commit df9c242e8b6208ea5f7b96acc47a7da35abf8603
|/ / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | |   Date:   Sun Aug 7 16:56:07 2011 +0400
| | | |   
| | | |       Fixed memory leak in consolidate of FibonacciHeap
| | | |   
| | | |   M	src/shogun/lib/FibonacciHeap.cpp
| | | |     
* | | | commit 62a3f253e68facebc524f5776109bc034eb2c5e4
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Aug 7 03:14:48 2011 +0400
| | | | 
| | | |     Updated python dimreduct graphical examples
| | | | 
| | | | M	examples/undocumented/python_modular/graphical/dimreduct/hemisphere.py
| | | | M	examples/undocumented/python_modular/graphical/dimreduct/swissroll.py
| | | |     
* | | | commit 60bde073fd88eb16b8489177b8480eeecd471ea1
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Aug 7 03:11:08 2011 +0400
| | | | 
| | | |     Enforce W matrices in LTSA and HLLE to zero
| | | | 
| | | | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | | | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| | | |     
* | | | commit ef0e4b175e57ffc5f97e9c839c52fefe2908c5e0
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Aug 7 03:10:39 2011 +0400
| | | | 
| | | |     Removed memleak from LandmarkMDS
| | | | 
| | | | M	src/shogun/preprocessor/LandmarkMDS.cpp
| | | |     
* | | | commit 92902801a9fac8045d39099b05106ae5dfd58ef9
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Aug 7 02:51:03 2011 +0400
| | | | 
| | | |     Made LandmarkMDS parallel
| | | | 
| | | | M	src/shogun/preprocessor/LandmarkMDS.cpp
| | | | M	src/shogun/preprocessor/LandmarkMDS.h
| | | |     
* | | | commit bec433f2c9e898f5e9bd9ddddc716a34c5f7d050
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Aug 7 02:49:05 2011 +0400
| | | | 
| | | |     Numthreads and style fixes for Isomap
| | | | 
| | | | M	src/shogun/preprocessor/Isomap.cpp
| | | |       
* | | |   commit e1eac745c2bceab04171e3463f3109e5641554db
|\ \ \ \  Merge: 74f775f 94d79dc
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Sat Aug 6 13:07:41 2011 -0700
| | | | | 
| | | | |     Merge pull request #269 from alesis/gmm
| | | | |     
| | | | |     Some fixes and checking for illegal use.
| | | | |      
| * | | | commit 94d79dcfec4618ba558ec96b8b90ed3428792b73
|/ / / /  Author: Alesis Novik <alesisnov@gmail.com>
| | | |   Date:   Tue Aug 2 15:53:47 2011 +0100
| | | |   
| | | |       Some fixes and checking for illegal use.
| | | |   
| | | |   M	src/shogun/clustering/GMM.cpp
| | | |     
* | | | commit 74f775f72fbcae9f6a693634abff2d6ce4d31efb
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sat Aug 6 16:56:54 2011 +0400
| | | | 
| | | |     Made Isomap Heap-Dijkstra parallel
| | | | 
| | | | M	src/shogun/preprocessor/Isomap.cpp
| | | | M	src/shogun/preprocessor/Isomap.h
| | | |     
* | | | commit 86e9ed98a7bfc1c192e4923a03cc7ad98e0ebf40
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sat Aug 6 04:08:51 2011 +0400
| | | | 
| | | |     Made CDistance parallel
| | | | 
| | | | M	src/shogun/distance/Distance.cpp
| | | | M	src/shogun/distance/Distance.h
| | | |       
* | | |   commit f27d0510aa70e27894b03c0924dd765bd151fd7a
|\ \ \ \  Merge: 7013309 b3d5d69
| | |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| |   Date:   Sat Aug 6 00:09:17 2011 +0200
| | | |   
| | | |       Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |     
| * | | commit b3d5d69cd5ab4c08f3f3671837f60af64b4099c1
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Fri Aug 5 19:25:23 2011 +0400
| | | | 
| | | |     Introduced Laplacian Eigenmaps preprocessor
| | | | 
| | | | A	examples/undocumented/python_modular/preprocessor_laplacianeigenmaps_modular.py
| | | | M	src/interfaces/modular/Preprocessor.i
| | | | M	src/interfaces/modular/Preprocessor_includes.i
| | | | A	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| | | | A	src/shogun/preprocessor/LaplacianEigenmaps.h
| | | | M	src/shogun/preprocessor/Preprocessor.h
| | | |     
| * | | commit 0ed492d24637f24161d19ae1863aaa03b92581b7
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Fri Aug 5 19:24:17 2011 +0400
| | | | 
| | | |     Removed Isomap type with only K-Isomap remain
| | | | 
| | | | M	src/shogun/preprocessor/Isomap.h
| | | |     
| * | | commit b683aa0e315448334cabc5c43720a25f1be27988
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Fri Aug 5 19:23:55 2011 +0400
| | | | 
| | | |     Added generalized eigenproblem support to ARPACK wrapper and adapted LLE and MDS
| | | | 
| | | | M	src/shogun/mathematics/arpack.cpp
| | | | M	src/shogun/mathematics/arpack.h
| | | | M	src/shogun/preprocessor/ClassicMDS.cpp
| | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | |     
| * | | commit 93dcc58ddf879085e5584d164af5c6d44607c50e
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Fri Aug 5 19:22:17 2011 +0400
| | | | 
| | | |     Added DSYGVX routine wrapper
| | | | 
| | | | M	src/shogun/mathematics/lapack.cpp
| | | | M	src/shogun/mathematics/lapack.h
| | | |       
| * | |   commit 4aeadde261f48bfea207f44f32945eb57fc434dc
| |\ \ \  Merge: 2be3008 47bb9cf
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Fri Aug 5 04:08:59 2011 -0700
| | | | | 
| | | | |     Merge pull request #263 from frx/streaming_vw
| | | | |     
| | | | |     Modified parse ring and parser to avoid race conditions, and for speedup.
| | | | |      
| | * | | commit 47bb9cf66fc1c0f2168c246ccec718d6b352e52d
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Fri Aug 5 00:46:47 2011 +0530
| | | | | 
| | | | |     Erased irrelevant comment.
| | | | | 
| | | | | M	src/shogun/io/ParseBuffer.h
| | | | |      
| | * | | commit a95b0a5e837cfa5bdd2d3c502d2491249ee667e7
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Fri Aug 5 00:45:21 2011 +0530
| | | | | 
| | | | |     Replaced StreamingAsciiFile.cpp with the newest version.
| | | | | 
| | | | | M	src/shogun/io/StreamingAsciiFile.cpp
| | | | |      
| | * | | commit 28cd0091b4d001b269bc5f258632f2ddfa519d2b
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Fri Aug 5 00:41:59 2011 +0530
| | | | | 
| | | | |     Removed use of new[] from ParseBuffer.h
| | | | | 
| | | | | M	src/shogun/io/InputParser.h
| | | | | M	src/shogun/io/ParseBuffer.h
| | | | | M	src/shogun/io/StreamingAsciiFile.cpp
| | | | |      
| | * | | commit a726b018dc14f21d457fb86b8c54ec7702632f62
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Thu Aug 4 21:49:16 2011 +0530
| | | | | 
| | | | |     Modified parse ring and parser to avoid race conditions, and for speedup.
| | | | | 
| | | | | M	src/shogun/io/InputParser.h
| | | | | M	src/shogun/io/ParseBuffer.h
| | | | |        
| * | | |   commit 2be30082a9662df568bc9724e32d2e98d599e094
| |\ \ \ \  Merge: f778cbe 2771890
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Fri Aug 5 04:08:39 2011 -0700
| | | | | | 
| | | | | |     Merge pull request #266 from karlnapf/master
| | | | | |     
| | | | | |     fixes for DataType.h
| | | | | |       
| | * | | | commit 2771890e2a59d8bb5bf174ab1f4c5d4c12e90d28
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 12:16:10 2011 +0200
| | | | | | 
| | | | | |     added some comments
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/features_copy_subset_sparse_features.cpp
| | | | | |       
| | * | | | commit c18e07f4d62315ba44558a2c7741dafcc05573fe
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 12:10:47 2011 +0200
| | | | | | 
| | | | | |     made example work
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/features_copy_subset_sparse_features.cpp
| | | | | |       
| | * | | | commit a751b5a50b57f2a9cb5e3bb1c7e2f5c0edc4c2bd
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 11:34:29 2011 +0200
| | | | | | 
| | | | | |     bug fix
| | | | | | 
| | | | | | M	src/shogun/features/SparseFeatures.h
| | | | | |       
| | * | | | commit 77529ad61dfb3ab6f305e0c44e3066e5f3691904
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 4 17:15:54 2011 +0200
| | | | | | 
| | | | | |     bugfixes
| | | | | | 
| | | | | | M	src/shogun/features/SparseFeatures.h
| | | | | |       
| | * | | | commit 2359c8564f5b14857a33ba3365e897331b384552
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 4 15:55:47 2011 +0200
| | | | | | 
| | | | | |     made copy_subset non-const
| | | | | | 
| | | | | | M	src/shogun/features/SparseFeatures.h
| | | | | |       
| | * | | | commit e4e5097371bf53ee2bf7e0852c179b48fa6071c4
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 4 15:55:11 2011 +0200
| | | | | | 
| | | | | |     added example/test for copy_subset on sparse features
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | | A	examples/undocumented/libshogun/features_copy_subset_sparse_features.cpp
| | | | | |       
| | * | | | commit fdcdfd50e004811b201f1d19d0ed64c9862b6037
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 4 13:45:32 2011 +0200
| | | | | | 
| | | | | |     towards working copy_subset
| | | | | | 
| | | | | | M	src/shogun/features/SparseFeatures.h
| | | | | |       
| | * | | | commit 0cd0cfcba8c310d3d73e1f2fdd53f9c855040d5e
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Aug 3 12:53:38 2011 +0200
| | | | | | 
| | | | | |     work towards copy_feature_subset
| | | | | | 
| | | | | | M	src/shogun/features/SparseFeatures.h
| | | | | |       
| | * | | | commit ed042fe886ba7897a50c8960c5886c65b37b0187
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Aug 3 11:42:35 2011 +0200
| | | | | | 
| | | | | |     started implementing copy_subset method
| | | | | | 
| | | | | | M	src/shogun/features/SparseFeatures.h
| | | | | |       
| | * | | | commit 52065edbb7f2629dbfc81be15bbece21bc7a34c7
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 4 15:25:01 2011 +0200
| | | | | | 
| | | | | |     made compute_sparse_feature_vector non-const
| | | | | | 
| | | | | | M	src/shogun/features/SparseFeatures.h
| | | | | |       
| | * | | | commit a3a1c651137b72c5c414c001b9785755863bc428
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 4 15:23:16 2011 +0200
| | | | | | 
| | | | | |     made get_sparse_feature_vector not being const
| | | | | | 
| | | | | | M	src/shogun/features/SparseFeatures.h
| | | | | |       
| | * | | | commit 334f7a1e5e52f00d4c11a1865ea41c72bdcf5c7d
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 4 15:20:25 2011 +0200
| | | | | | 
| | | | | |     made get_sparse_feature_vector and compute_sparse_feature_vector const
| | | | | | 
| | | | | | M	src/shogun/features/SparseFeatures.h
| | | | | |       
| | * | | | commit e3bf80e0dd35151012e37f57a23581252e091c77
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 4 16:01:01 2011 +0200
| | | | | | 
| | | | | |     fixed bug, uninitialised num_vectors variable
| | | | | | 
| | | | | | M	src/shogun/lib/DataType.h
| | | | | |       
| | * | | | commit 9013785c4c3c735e9ed684e6401f32a7bd95907a
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 4 15:50:53 2011 +0200
| | | | | | 
| | | | | |     renamed all free variable to avoid name clashes with free()
| | | | | | 
| | | | | | M	src/shogun/lib/DataType.h
| | | | | |         
| * | | | |   commit f778cbe89e9e0a37c9412f16abd639324cdef350
| |\ \ \ \ \  Merge: 4e8838e edab68c
| | |/ / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | |   Date:   Fri Aug 5 03:49:08 2011 -0700
| | | | | |   
| | | | | |       Merge pull request #265 from karlnapf/master
| | | | | |       
| | | | | |       example corrections and made get_num_preprocessors() const
| | | | | |       
| | * | | | commit edab68ce196186fe0981428733004294f738c9b0
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 4 15:27:43 2011 +0200
| | | | | | 
| | | | | |     made copy_subset() non-const
| | | | | | 
| | | | | | M	src/shogun/features/Features.h
| | | | | | M	src/shogun/features/SimpleFeatures.h
| | | | | | M	src/shogun/features/StringFeatures.h
| | | | | |       
| | * | | | commit a06ede4417b05be02e52819e244fb9a0ade88092
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 12:30:34 2011 +0200
| | | | | | 
| | | | | |     applied get_spare_vector() changes
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| | | | | |       
| | * | | | commit 6b6a17852951bf6407c491fd037a3f817e29c018
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 4 15:02:23 2011 +0200
| | | | | | 
| | | | | |     made get_num_preprocessors() const
| | | | | | 
| | | | | | M	src/shogun/features/Features.h
| | | | | |         
| * | | | |   commit 4e8838e8b15f9bfac932ab0d8cf7ce4e7ff8735d
| |\ \ \ \ \  Merge: bf0c2af e06c208
| | |/ / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | / / /   Date:   Fri Aug 5 02:54:12 2011 -0700
| | |/ / /    
| |/| | |         Merge pull request #264 from karlnapf/master
| | | | |         
| | | | |         SGVector replacements
| | | | |      
| | * | | commit e06c20896afd118c1d6cafbf9db50fdc9e4cdc49
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Aug 3 18:01:03 2011 +0200
| | | | | 
| | | | |     SGVector replacement fixes
| | | | | 
| | | | | M	src/shogun/features/SparseFeatures.h
| | | | |      
| | * | | commit 9037d90f4b28f4b3ec5003d8c80630afa4d16bd1
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Aug 3 17:39:03 2011 +0200
| | | | | 
| | | | |     SGVector replacements
| | | | | 
| | | | | M	src/shogun/io/StreamingFileFromSparseFeatures.h
| | | | |      
| | * | | commit e78fa8624d9dc06212ab003cb6667dca00a91066
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Aug 3 17:29:15 2011 +0200
| | | | | 
| | | | |     SGVector replacements
| | | | | 
| | | | | M	src/shogun/features/SparsePolyFeatures.cpp
| | | | | M	src/shogun/features/SparsePolyFeatures.h
| | | | |      
| | * | | commit 6985cc3d3b0e28899556b7828065b8d3fbed071f
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Aug 3 17:16:10 2011 +0200
| | | | | 
| | | | |     SGVector replacements
| | | | | 
| | | | | M	src/shogun/features/SparseFeatures.h
| | | | |      
| | * | | commit 569c74a6654112208d873a0b00c7abb5e6f80601
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Wed Aug 3 13:03:00 2011 +0200
| | | |   
| | | |       towards SGVector replacement in get_sparse_feature_vector
| | | |   
| | | |   M	src/shogun/features/SparseFeatures.h
| | | |       
| * | |   commit bf0c2afee970297f35fbe4c884191993901ed21a
| |\ \ \  Merge: beb108c 765bfc3
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Thu Aug 4 14:08:49 2011 -0700
| | | | | 
| | | | |     Merge pull request #262 from karlnapf/master
| | | | |     
| | | | |     made get_dim_feature_space method const
| | | | |      
| | * | | commit 765bfc390ee9b213ea8ecf7f41120af5f0b27406
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Aug 3 13:09:18 2011 +0200
| | | | | 
| | | | |     removed another compiler warning
| | | | | 
| | | | | M	src/shogun/lib/DataType.h
| | | | |      
| | * | | commit 332c8e41dfda5d0db30fb23be94933b725c6c871
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Aug 3 13:08:02 2011 +0200
| | | | | 
| | | | |     (hopefully) removed some warnings regarding initialization
| | | | | 
| | | | | M	src/shogun/lib/DataType.h
| | | | |      
| | * | | commit 4d85fba357387d4c3ae972f70bbfded62d09ee6b
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Aug 3 12:45:19 2011 +0200
| | | | | 
| | | | |     made get_dim_feature_space method const
| | | | | 
| | | | | M	src/shogun/features/StreamingSimpleFeatures.h
| | | | | M	src/shogun/features/StreamingSparseFeatures.h
| | | | |      
| | * | | commit 51aed9ec32597cea85df9c9959e2c6cbfa5fc1e6
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Wed Aug 3 12:41:06 2011 +0200
| | | |   
| | | |       made get_dim_feature_space method const
| | | |   
| | | |   M	src/shogun/features/CombinedDotFeatures.h
| | | |   M	src/shogun/features/DotFeatures.h
| | | |   M	src/shogun/features/ExplicitSpecFeatures.h
| | | |   M	src/shogun/features/HashedWDFeatures.h
| | | |   M	src/shogun/features/HashedWDFeaturesTransposed.h
| | | |   M	src/shogun/features/ImplicitWeightedSpecFeatures.h
| | | |   M	src/shogun/features/LBPPyrDotFeatures.h
| | | |   M	src/shogun/features/PolyFeatures.h
| | | |   M	src/shogun/features/SNPFeatures.h
| | | |   M	src/shogun/features/SimpleFeatures.h
| | | |   M	src/shogun/features/SparseFeatures.h
| | | |   M	src/shogun/features/SparsePolyFeatures.h
| | | |   M	src/shogun/features/StreamingDotFeatures.h
| | | |   M	src/shogun/features/StreamingSimpleFeatures.h
| | | |   M	src/shogun/features/StreamingSparseFeatures.h
| | | |   M	src/shogun/features/WDFeatures.h
| | | |       
| * | |   commit beb108c27bebcdbeb26057110cd36bd92ea7b9f2
| |\ \ \  Merge: eb4d547 787f384
| | |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Thu Aug 4 03:55:53 2011 -0700
| | | |   
| | | |       Merge pull request #261 from sploving/master
| | | |       
| | | |       add out typemap
| | | |     
| | * | commit 787f384cf1bfd59837ed4a37d6835163b12bdf5d
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Thu Aug 4 12:33:51 2011 +0800
| | | | 
| | | |     add csout typemap
| | | | 
| | | | M	src/interfaces/csharp_modular/swig_typemaps.i
| | | |     
* | | | commit 70133099d7b181647a342c4e7e88bfad5b69d760
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Sat Aug 6 00:07:43 2011 +0200
| | |   
| | |       derive java modular classes from Serializable and add dummy
| | |       write/readObject functions
| | |   
| | |   M	src/interfaces/java_modular/swig_typemaps.i
| | |   M	src/interfaces/modular/SGBase.i
| | |    
* | | commit eb4d547edaa4757a30fe51dfbb3d8622c505ded9
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu Aug 4 01:33:22 2011 +0400
| | | 
| | |     News and contributions additions
| | | 
| | | M	src/CONTRIBUTIONS
| | | M	src/NEWS
| | |      
* | |   commit 9dc8f2bf46438efc1bbe236c63433a1bf5325664
|\ \ \  Merge: 6e6794a 7a745ad
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Aug 3 22:57:27 2011 +0200
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |       
| * | |   commit 7a745ad175e872da4b9ae2bfe8f749df8d45ab07
| |\ \ \  Merge: 1e48c60 a8175a3
| | |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Wed Aug 3 11:11:51 2011 -0700
| | | |   
| | | |       Merge pull request #259 from sploving/master
| | | |       
| | | |       support c# sgvector
| | | |     
| | * | commit a8175a35879a120d4de11b859d5ec56d9c1ce883
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Wed Aug 3 16:41:15 2011 +0800
| | | | 
| | | |     add VectorTest example
| | | | 
| | | | A	examples/undocumented/csharp_modular/VectorTest.cs
| | | |     
| | * | commit b8ead091b199f10c36dbd9accfa6e184cb79fa15
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Wed Aug 3 16:40:29 2011 +0800
| | | | 
| | | |     support C# SGVector
| | | | 
| | | | M	src/interfaces/csharp_modular/swig_typemaps.i
| | | |     
| | * | commit a5dca8d185ebe009024b628329306439ca28c80e
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 29 21:21:33 2011 +0800
| | | | 
| | | |     add kernel_linear_byte/word_modular
| | | | 
| | | | A	examples/undocumented/ruby_modular/kernel_linear_byte_modular.rb
| | | | A	examples/undocumented/ruby_modular/kernel_linear_word_modular.rb
| | | |       
| * | |   commit 1e48c60d83e60867f1aa7cde9cc6ad37eef475a2
| |\ \ \  Merge: 314f4b1 36a6c15
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Wed Aug 3 11:08:28 2011 -0700
| | | | | 
| | | | |     Merge pull request #260 from karlnapf/master
| | | | |     
| | | | |     data type extensions
| | | | |      
| | * | | commit 36a6c15170ef037ee4e4d1ab6dcdf2dbad3acc44
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Aug 3 12:16:33 2011 +0200
| | | | | 
| | | | |     -added free and destroy methods for some data-types
| | | | |     -added constructors and methods to SGSparseVector
| | | | |     -added constructor to create new sparse matrix in memory
| | | | |     -some white space changes
| | | | | 
| | | | | M	src/shogun/lib/DataType.h
| | | | |      
| * | | | commit 314f4b1a505c4bfad7f13f3580e6245ce3beb82f
| |/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | |   Date:   Wed Aug 3 21:04:59 2011 +0400
| | | |   
| | | |       Changed isomap geodesic distance with Dijkstra Heap instead of Floyd
| | | |   
| | | |   M	src/shogun/preprocessor/Isomap.cpp
| | | |     
| * | | commit 9d3e4f40579db3b3e7a2c5785feaea9ed16984cc
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Wed Aug 3 03:28:50 2011 +0400
| | | | 
| | | |     Removed unnecessary symmetrize matrix in Isomap
| | | | 
| | | | M	src/shogun/preprocessor/Isomap.cpp
| | | |     
* | | | commit 6e6794ac01c8ac1f7ae0ed252197ed50e443ad53
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Wed Aug 3 22:36:46 2011 +0200
| | |   
| | |       fix osx build failure (inspired by the patch from av3ngr)
| | |   
| | |   M	src/shogun/io/AsciiFile.cpp
| | |      
* | |   commit 6387718cb3a8b19bb0ff3ff603cfefd0714056db
|\ \ \  Merge: a2be4dd 8c24d9e
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Aug 2 12:05:04 2011 -0700
| | | | 
| | | |     Merge pull request #258 from karlnapf/master
| | | |     
| | | |     model selection now really works on model_selection_parameters
| | | |     
| * | | commit 8c24d9e3cdb09221d4b6cb54cb1da13e05dc7611
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 18:09:48 2011 +0200
| | | | 
| | | |     added methods to get names of model selection parameters and their descriptions and index (to get type)
| | | | 
| | | | M	src/shogun/base/SGObject.cpp
| | | | M	src/shogun/base/SGObject.h
| | | |     
| * | | commit 61897972b7bb5fee5e28f16baba0c9647b4dc310
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 18:08:54 2011 +0200
| | | | 
| | | |     added example how to see which parameters are available for model selection, including description and type
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | A	examples/undocumented/libshogun/parameter_modsel_parameters.cpp
| | | |     
| * | | commit 8e0b6dde183893bdeb6219a8ed7d8b3f88e4eb53
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 16:17:38 2011 +0200
| | | | 
| | | |     made example smaller and removed a "END" print
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | | |     
| * | | commit 6a022212206a111924806534358ceb0c4f374897
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 16:17:17 2011 +0200
| | | | 
| | | |     "End" print removal
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_model_selection_parameters_test.cpp
| | | | M	examples/undocumented/libshogun/modelselection_parameter_combination_test.cpp
| | | |     
| * | | commit 4d0d9347289150e6031ecd96359530329d3d5800
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 16:17:03 2011 +0200
| | | | 
| | | |     usage of SG_ADD for parameter registration
| | | | 
| | | | M	src/shogun/kernel/DistantSegmentsKernel.cpp
| | | |     
| * | | commit e30227a11c6e65f46c05f5371e84528af005c6c8
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 16:09:39 2011 +0200
| | | | 
| | | |     usage of CMath::exp instead of std::exp
| | | | 
| | | | M	src/shogun/kernel/GaussianKernel.cpp
| | | |     
| * | | commit f42e297f9d07f4fb35ac60c349cb7f7696b38c5b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 16:09:13 2011 +0200
| | | | 
| | | |     usage of SG_ADD for registering parameters
| | | | 
| | | | M	src/shogun/distance/MinkowskiMetric.cpp
| | | | M	src/shogun/kernel/PowerKernel.cpp
| | | | M	src/shogun/machine/KernelMachine.cpp
| | | |     
| * | | commit fa72e811c6db976e8091f320f16ba49778289cd2
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 16:08:51 2011 +0200
| | | | 
| | | |     removed a modsel parameter
| | | | 
| | | | M	src/shogun/classifier/svm/SVM.cpp
| | | |     
| * | | commit 8ae650b5785343e11e24b54bd0f67383d6653d31
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 16:08:33 2011 +0200
| | | | 
| | | |     removed "end" print out
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | | |     
| * | | commit d43f67d16f3e92faf13281d33290d4820fce8633
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 16:08:10 2011 +0200
| | | | 
| | | |     applied name change
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | |     
| * | | commit 2bd40d52c8ec3af859e76f80b08446e35d466773
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 15:57:10 2011 +0200
| | | | 
| | | |     copy&pase error mistake
| | | | 
| | | | M	src/shogun/modelselection/GridSearchModelSelection.cpp
| | | | M	src/shogun/modelselection/ParameterCombination.cpp
| | | | M	src/shogun/modelselection/ParameterCombination.h
| | | |     
| * | | commit a7af19386931686c25b336c447de00d9dec672ff
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 15:54:22 2011 +0200
| | | | 
| | | |     applied name change
| | | | 
| | | | M	src/shogun/modelselection/GridSearchModelSelection.cpp
| | | |     
| * | | commit cb01baa2b0e00c65196da732753197e83578b55b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 15:54:15 2011 +0200
| | | | 
| | | |     -name change and usage of model selection parameters in apply_to_parameter
| | | | 
| | | | M	src/shogun/modelselection/ParameterCombination.cpp
| | | | M	src/shogun/modelselection/ParameterCombination.h
| | | |     
| * | | commit e3a8ec64620bee777bb32c79bc14d75548672a2b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 15:53:38 2011 +0200
| | | | 
| | | |     SGVector replacement and usage of SG_ADD for registering parameters
| | | | 
| | | | M	src/shogun/classifier/svm/SVM.cpp
| | | |     
| * | | commit e4cda95777095e6528d340436d72e8d70e8aa870
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 15:52:50 2011 +0200
| | | | 
| | | |     SGVector replacement
| | | | 
| | | | M	src/shogun/classifier/svm/SVM.h
| | | | M	src/shogun/classifier/svm/SVMLight.cpp
| | | | M	src/shogun/regression/svr/SVRLight.cpp
| | | |     
| * | | commit 416ed90f242e7b83e61f529efeae0f7b8131622a
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 15:52:08 2011 +0200
| | | | 
| | | |     SGVector replacement
| | | | 
| | | | M	src/shogun/classifier/svm/LibSVM.cpp
| | | |     
| * | | commit 8481716881a5b6e33a924a2c59bd917577c0ae2c
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 15:51:48 2011 +0200
| | | | 
| | | |     added ASSERT
| | | | 
| | | | M	src/shogun/base/Parameter.cpp
| | | |     
| * | | commit 181ac01a7e08d16ab5f88f42047d64032aac1f54
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 15:51:35 2011 +0200
| | | | 
| | | |     removal of "END" print
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| | | |     
| * | | commit 2e5469fe930fd64417e2e2d1402091713855ede9
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 15:51:19 2011 +0200
| | | | 
| | | |     SGVector replacement
| | | | 
| | | | M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | | |     
| * | | commit fee64d1024c7a421f52085ca25eb6512794786a9
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 15:51:04 2011 +0200
| | | | 
| | | |     -replaced linear_term float array by SGVector
| | | |     -avoid making copies in get_linear_term()
| | | |     -usage of SG_ADD to register parameters, model selection parameters are also registered now
| | | | 
| | | | M	src/shogun/classifier/svm/LibLinear.cpp
| | | | M	src/shogun/classifier/svm/LibLinear.h
| | | |     
| * | | commit 24db29761214c0d44b2a0bed6056daa5a5d175ed
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 14:44:22 2011 +0200
| | | | 
| | | |     removed print of model selection parameters (not serialized)
| | | | 
| | | | M	src/shogun/base/SGObject.cpp
| | | |     
| * | | commit 8230cbef8cd95eb6daac0beba50131de765fdb79
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 12:55:33 2011 +0200
| | | | 
| | | |     parameter combinations are now applied to model_selection_parameters of a SGObject
| | | | 
| | | | M	src/shogun/modelselection/GridSearchModelSelection.cpp
| | | |     
| * | | commit 0de84389b81774e7c903c23174e7706828e7dd54
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 12:54:55 2011 +0200
| | | | 
| | | |     removed get_machine_parameters() and added get_machine()
| | | | 
| | | | M	src/shogun/evaluation/CrossValidation.cpp
| | | | M	src/shogun/evaluation/CrossValidation.h
| | | |     
| * | | commit eeacbfacb25cbe8e918c0412de658182be907e3f
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Tue Aug 2 12:54:23 2011 +0200
| | |   
| | |       removed unnecessary macros (we have types for matrix and vector now)
| | |   
| | |   M	src/shogun/base/SGObject.h
| | |    
* | | commit a2be4dde5f464aa0e202e3d5ef1abb68209a09d5
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue Aug 2 05:07:36 2011 +0400
| | | 
| | |     Added fast neighbor search for LLE, HLLE, LTSA with Fibonacci heap
| | | 
| | | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | |      
* | |   commit 6d92388d6f92eaf9b5272f1cd40a31a6b2e065a6
|\ \ \  Merge: 8f35bbc b8e83e8
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Aug 1 11:56:56 2011 -0700
| | | | 
| | | |     Merge pull request #251 from frx/streaming_1
| | | |     
| | | |     Loss Functions
| | | |     
| * | | commit b8e83e83f8c2f9ad44297fe36580f498a1098afc
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Mon Aug 1 12:54:15 2011 +0530
| | | | 
| | | |     Added SG_UNREF in destructor for loss functions.
| | | | 
| | | | M	src/shogun/classifier/svm/OnlineSVMSGD.cpp
| | | | M	src/shogun/classifier/svm/SGDQN.cpp
| | | | M	src/shogun/classifier/svm/SVMSGD.cpp
| | | |     
| * | | commit 326dbd6f36bc109a9d972eef2f069bc65e6424d5
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Mon Aug 1 12:31:51 2011 +0530
| | | | 
| | | |     Added SG_REF and base class constructor calls for loss functions.
| | | | 
| | | | M	src/shogun/classifier/svm/OnlineSVMSGD.cpp
| | | | M	src/shogun/classifier/svm/OnlineSVMSGD.h
| | | | M	src/shogun/classifier/svm/SGDQN.cpp
| | | | M	src/shogun/classifier/svm/SGDQN.h
| | | | M	src/shogun/classifier/svm/SVMSGD.cpp
| | | | M	src/shogun/classifier/svm/SVMSGD.h
| | | | M	src/shogun/loss/HingeLoss.h
| | | | M	src/shogun/loss/LogLoss.h
| | | | M	src/shogun/loss/LogLossMargin.h
| | | | M	src/shogun/loss/LossFunction.h
| | | | M	src/shogun/loss/SmoothHingeLoss.h
| | | | M	src/shogun/loss/SquaredHingeLoss.h
| | | | M	src/shogun/loss/SquaredLoss.h
| | | |     
| * | | commit ab25c5bbc3fde6ebc508625bad1b6fdcb99a98bb
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Sun Jul 31 18:54:27 2011 +0530
| | | | 
| | | |     Added get_update and get_square_grad functions which are used in VW losses.
| | | | 
| | | | M	src/shogun/loss/HingeLoss.cpp
| | | | M	src/shogun/loss/HingeLoss.h
| | | | M	src/shogun/loss/LogLoss.cpp
| | | | M	src/shogun/loss/LogLoss.h
| | | | M	src/shogun/loss/LogLossMargin.cpp
| | | | M	src/shogun/loss/LogLossMargin.h
| | | | M	src/shogun/loss/LossFunction.h
| | | | M	src/shogun/loss/SmoothHingeLoss.cpp
| | | | M	src/shogun/loss/SmoothHingeLoss.h
| | | | M	src/shogun/loss/SquaredHingeLoss.cpp
| | | | M	src/shogun/loss/SquaredHingeLoss.h
| | | | M	src/shogun/loss/SquaredLoss.cpp
| | | | M	src/shogun/loss/SquaredLoss.h
| | | |     
| * | | commit 3dca9e038d8000b0e01fb5f24951a46170733c42
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Sun Jul 31 18:19:41 2011 +0530
| | | | 
| | | |     Correct typo in doc.
| | | | 
| | | | M	src/shogun/loss/LogLoss.h
| | | |     
| * | | commit 6fe09ad3230b3fd1659bf271a89993329eec2396
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Sun Jul 31 18:17:29 2011 +0530
| | | | 
| | | |     Added get_loss_function for SGDQN and OnlineSVMSGD.
| | | | 
| | | | M	src/shogun/classifier/svm/OnlineSVMSGD.cpp
| | | | M	src/shogun/classifier/svm/SGDQN.cpp
| | | |     
| * | | commit 54e4657f70ea07d09eece76f3066e3e52e223a4f
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Sun Jul 31 17:03:29 2011 +0530
| | | | 
| | | |     Modified SGD, SGDQN to use loss function classes.
| | | | 
| | | | M	src/shogun/classifier/svm/OnlineSVMSGD.cpp
| | | | M	src/shogun/classifier/svm/OnlineSVMSGD.h
| | | | M	src/shogun/classifier/svm/SGDQN.cpp
| | | | M	src/shogun/classifier/svm/SGDQN.h
| | | | M	src/shogun/classifier/svm/SVMSGD.cpp
| | | | M	src/shogun/loss/HingeLoss.h
| | | | M	src/shogun/loss/LogLoss.cpp
| | | | M	src/shogun/loss/LogLoss.h
| | | | M	src/shogun/loss/LogLossMargin.h
| | | | M	src/shogun/loss/LossFunction.h
| | | | M	src/shogun/loss/SmoothHingeLoss.h
| | | | M	src/shogun/loss/SquaredHingeLoss.h
| | | | M	src/shogun/loss/SquaredLoss.h
| | | |     
| * | | commit c36e5520f2b98cf7d17a91953af4efc372a11fa4
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Sun Jul 31 10:58:22 2011 +0530
| | | | 
| | | |     SGD uses shogun loss functions.
| | | | 
| | | | M	src/shogun/classifier/svm/SVMSGD.cpp
| | | |     
| * | | commit 691d2596006d335355e9da1ab7c6fea1278ca92c
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Sun Jul 31 10:42:57 2011 +0530
| | | | 
| | | |     Rewrite of accidentally deleted loss functions.
| | | | 
| | | | M	src/shogun/classifier/svm/SVMSGD.cpp
| | | | M	src/shogun/classifier/svm/SVMSGD.h
| | | | A	src/shogun/loss/HingeLoss.cpp
| | | | A	src/shogun/loss/HingeLoss.h
| | | | A	src/shogun/loss/LogLoss.cpp
| | | | A	src/shogun/loss/LogLoss.h
| | | | A	src/shogun/loss/LogLossMargin.cpp
| | | | A	src/shogun/loss/LogLossMargin.h
| | | | A	src/shogun/loss/LossFunction.h
| | | | A	src/shogun/loss/SmoothHingeLoss.cpp
| | | | A	src/shogun/loss/SmoothHingeLoss.h
| | | | A	src/shogun/loss/SquaredHingeLoss.cpp
| | | | A	src/shogun/loss/SquaredHingeLoss.h
| | | | A	src/shogun/loss/SquaredLoss.cpp
| | | | A	src/shogun/loss/SquaredLoss.h
| | | |     
| * | | commit c162c6a3a71a886eaaaac7b6c41de16bc7cce6aa
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Sun Jul 31 02:08:56 2011 +0530
| | | | 
| | | |     Added loss functions, moved to loss/
| | | | 
| | | | D	src/shogun/losses/HingeLoss.cpp
| | | | D	src/shogun/losses/HingeLoss.h
| | | | D	src/shogun/losses/LossFunction.h
| | | | D	src/shogun/losses/SquaredLoss.cpp
| | | | D	src/shogun/losses/SquaredLoss.h
| | | |     
| * | | commit 2f3568b8ffb0bcd3d6b0d58c2ffb43d08c4f9738
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Sat Jul 30 11:07:53 2011 +0530
| | | | 
| | | |     Removed VW-specific functions in LossFunction class
| | | | 
| | | | M	src/shogun/losses/HingeLoss.cpp
| | | | M	src/shogun/losses/HingeLoss.h
| | | | M	src/shogun/losses/LossFunction.h
| | | | M	src/shogun/losses/SquaredLoss.cpp
| | | | M	src/shogun/losses/SquaredLoss.h
| | | |     
| * | | commit 57f2d231e0370a7cd5caab812c4a1bba83f6b036
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Sat Jul 30 10:54:00 2011 +0530
| | | | 
| | | |     Added loss functions.
| | | | 
| | | | A	src/shogun/losses/HingeLoss.cpp
| | | | A	src/shogun/losses/HingeLoss.h
| | | | A	src/shogun/losses/LossFunction.h
| | | | A	src/shogun/losses/SquaredLoss.cpp
| | | | A	src/shogun/losses/SquaredLoss.h
| | | |       
* | | |   commit 8f35bbc620a5e7178b2fe1004945fc006354431d
|\ \ \ \  Merge: 60efbcd bc3c4b9
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Aug 1 11:22:40 2011 -0700
| | | | | 
| | | | |     Merge pull request #257 from karlnapf/master
| | | | |     
| | | | |     reworked distance machines
| | | | |      
| * | | | commit bc3c4b95afdeab6344aa24e16f076e7b04658510
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 15:48:04 2011 +0200
| | | | | 
| | | | |     fix compile error
| | | | | 
| | | | | M	src/shogun/classifier/KNN.cpp
| | | | |      
| * | | | commit af64e4f78d25f5846b47cfbf5ee20d6638ecd200
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 15:47:37 2011 +0200
| | | | | 
| | | | |     -added init method
| | | | |     -added registration of parameters for serialization
| | | | |     -set store_model_features flag to false by default
| | | | | 
| | | | | M	src/shogun/classifier/KNN.cpp
| | | | | M	src/shogun/classifier/KNN.h
| | | | |      
| * | | | commit b0be93e727462a87419056b48ac4d0fc17a18bc8
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 15:32:54 2011 +0200
| | | | | 
| | | | |     updated comments
| | | | | 
| | | | | M	src/shogun/machine/DistanceMachine.h
| | | | |      
| * | | | commit 94ca93ca4ccd631d6b2573fc8e99a4abf7e16757
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 15:32:45 2011 +0200
| | | | | 
| | | | |     -added ASSERT
| | | | |     -reference counting bug fix
| | | | | 
| | | | | M	src/shogun/machine/DistanceMachine.cpp
| | | | |      
| * | | | commit b2a3a7d3741249eba57db84269ab32ccb2f9ec61
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 15:32:22 2011 +0200
| | | | | 
| | | | |     added ASSERT for indices in compute()
| | | | | 
| | | | | M	src/shogun/distance/Distance.h
| | | | |      
| * | | | commit 777e758c44f25ad6072402c74096eddc5eb2c31b
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 15:32:05 2011 +0200
| | | | | 
| | | | |     fix reference count bug
| | | | | 
| | | | | M	src/shogun/clustering/KMeans.cpp
| | | | |      
| * | | | commit 19cf81b12cb151df1e36ec7d5f070b9db2262bab
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 15:31:49 2011 +0200
| | | | | 
| | | | |     added kmeans example
| | | | | 
| | | | | M	examples/undocumented/libshogun/Makefile
| | | | | A	examples/undocumented/libshogun/clustering_kmeans.cpp
| | | | |      
| * | | | commit c7959e041e2c35cef22c9d4d95ff938be65c66c2
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 12:16:17 2011 +0200
| | | | | 
| | | | |     distance machine now has implemented apply methods which asumes that cluster centers are in lhs of distance variable. Simply returns cluster label with min distance to provided data
| | | | | 
| | | | | M	src/shogun/machine/DistanceMachine.cpp
| | | | | M	src/shogun/machine/DistanceMachine.h
| | | | |      
| * | | | commit 161890e9deda8b7a07119925845d043783ec081f
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 12:15:21 2011 +0200
| | | | | 
| | | | |     -applied changes of distance machine
| | | | |     -some internal changes
| | | | | 
| | | | | M	src/shogun/clustering/KMeans.cpp
| | | | | M	src/shogun/clustering/KMeans.h
| | | | |      
| * | | | commit f1230c3e5f2423e51d990fb9ebd33bfeabc2578d
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 12:14:40 2011 +0200
| | | | | 
| | | | |     -applied distance machine changes
| | | | |     -apply and store_model_features unimplemented for now
| | | | | 
| | | | | M	src/shogun/clustering/Hierarchical.cpp
| | | | | M	src/shogun/clustering/Hierarchical.h
| | | | |      
| * | | | commit 5c0d80524f0dadd53e40e2348226e16d70858dc9
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 12:14:09 2011 +0200
| | | | | 
| | | | |     store_model_features now only copied lhs of features
| | | | | 
| | | | | M	src/shogun/classifier/KNN.cpp
| | | | |      
| * | | | commit 1605cc2ed0cbcb005d22e965b9c3fe3d8c6d596e
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 12:13:51 2011 +0200
| | | | | 
| | | | |     made store_model_features private
| | | | | 
| | | | | M	src/shogun/classifier/KNN.h
| | | | | M	src/shogun/machine/KernelMachine.h
| | | | | M	src/shogun/machine/LinearMachine.h
| | | | | M	src/shogun/machine/Machine.h
| | | | |      
| * | | | commit 0d695d42d18a8c5d027dd9dda9a63f85de48ffd2
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Sun Jul 31 13:41:39 2011 +0200
| | | | | 
| | | | |     towards model selection for distance machines
| | | | | 
| | | | | M	src/shogun/clustering/KMeans.cpp
| | | | | M	src/shogun/clustering/KMeans.h
| | | | | M	src/shogun/machine/DistanceMachine.h
| | | | | M	src/shogun/machine/Machine.h
| | | | |      
| * | | | commit 5452f738ea6a0b9e09041dd6c362f88a2a9405ed
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Fri Jul 29 15:17:16 2011 +0200
| | | | | 
| | | | |     comments
| | | | | 
| | | | | M	src/shogun/clustering/KMeans.h
| | | | |      
| * | | | commit fe430917a318b2cae166a91b44f251e64c7e0514
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Fri Jul 29 15:14:46 2011 +0200
| | | | | 
| | | | |     implemented apply methods
| | | | | 
| | | | | M	src/shogun/clustering/KMeans.cpp
| | | | | M	src/shogun/clustering/KMeans.h
| | | | |      
| * | | | commit 9f2384dbef76c709de42fdbd7074f12f1204b240
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Fri Jul 29 14:46:29 2011 +0200
| | | | | 
| | | | |     train method now saves cluster centers in lhs of distance variable
| | | | | 
| | | | | M	src/shogun/clustering/KMeans.cpp
| | | | |      
| * | | | commit 9953ed428e8a86b7dfb7927fc523683bfdf03a4d
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Fri Jul 29 14:39:03 2011 +0200
| | | | | 
| | | | |     -removed mus variable (cluster centers)
| | | | |     -train method now stores these centers in lhs of distance
| | | | | 
| | | | | M	src/shogun/clustering/KMeans.cpp
| | | | | M	src/shogun/clustering/KMeans.h
| | | | |      
| * | | | commit 4c7d0c8de60fd3e7d9f5ff73b28c9755be404978
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Fri Jul 29 12:56:59 2011 +0200
| | | | | 
| | | | |     added (yet empty) store_model_features() method
| | | | | 
| | | | | M	src/shogun/clustering/KMeans.cpp
| | | | | M	src/shogun/clustering/KMeans.h
| | | | |      
| * | | | commit 0186cd3adb0da5d38d141ac3e58a0502e8847ca5
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Fri Jul 29 12:44:27 2011 +0200
| | | | | 
| | | | |     fix compile error
| | | | | 
| | | | | M	src/shogun/classifier/KNN.cpp
| | | | |      
| * | | | commit 45eeffd2003a7624a053b471f8f21fd19b577e48
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Fri Jul 29 12:29:17 2011 +0200
| | | | | 
| | | | |     features are needed for apply, so overwrite store_model_features to duplicate feature data
| | | | | 
| | | | | M	src/shogun/classifier/KNN.cpp
| | | | | M	src/shogun/classifier/KNN.h
| | | | |      
| * | | | commit 786170294fcc418439d9e9c7088cb43b51318d11
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Fri Jul 29 12:28:47 2011 +0200
| | | | | 
| | | | |     store_model_features now does nothing here
| | | | | 
| | | | | M	src/shogun/machine/DistanceMachine.cpp
| | | | |      
| * | | | commit f4b1d9aba1b06689a8b1f79d1b08cf2ce0b3eb97
|/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Fri Jul 29 12:10:20 2011 +0200
| | | |   
| | | |       implemented store_model_features() to make DistanceMachines work with cross-validation
| | | |   
| | | |   M	src/shogun/machine/DistanceMachine.cpp
| | | |     
| | | * commit 82733a7df28b8d6fd59786232c3dc614c145f253
| |_|/  Author: Evgeniy Andreev <gsomix@gmail.com>
|/| |   Date:   Tue Aug 9 13:04:55 2011 +0400
| | |   
| | |       Work commit
| | |   
| | |   M	src/shogun/lib/FibonacciHeap.cpp
| | |      
* | |   commit 60efbcdbdc0d9c6cf8f4c54fbad061dd5b1bd516
|\ \ \  Merge: a514bca 44708d4
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Mon Aug 1 17:14:44 2011 +0400
| | | | 
| | | |     Merge branch 'master' of git://github.com/gsomix/shogun
| | | |     
| * | | commit 44708d4979e5e8880f6237725571f2dbf06f113e
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Mon Aug 1 16:53:31 2011 +0400
| | | | 
| | | |     More, more fixes in include of Fibonacci heap
| | | | 
| | | | M	src/shogun/lib/FibonacciHeap.h
| | | |     
| * | | commit 7190834656c712047f8f19ae4a5f2443a083cd70
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Mon Aug 1 16:49:37 2011 +0400
| | | | 
| | | |     Typing error
| | | | 
| | | | M	src/shogun/lib/FibonacciHeap.cpp
| | | |     
| * | | commit 2c66ec85a29544017cc2cd5c90faa624d9ef581e
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Mon Aug 1 15:26:27 2011 +0400
| | | | 
| | | |     Include file fixed
| | | | 
| | | | M	src/shogun/lib/FibonacciHeap.h
| | | |     
| * | | commit c25193c3fa784d040fec069016ae322a3e639305
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Mon Aug 1 15:21:51 2011 +0400
| | | | 
| | | |     Micro fix
| | | | 
| | | | M	src/shogun/lib/FibonacciHeap.cpp
| | | |     
| * | | commit 2cd984b3fd68a3f964e2941d9ed59ba658a0015b
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Mon Aug 1 14:34:55 2011 +0400
| | | | 
| | | |     Some fixes in Fibonacci heap
| | | | 
| | | | M	src/shogun/lib/FibonacciHeap.cpp
| | | |       
* | | |   commit a514bca4f7200429d1696953ca9d3cadacb80a5f
|\ \ \ \  Merge: 380af5a 2d2fbf8
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Sun Jul 31 12:09:22 2011 -0700
| | | | | 
| | | | |     Merge pull request #255 from alesis/gmm
| | | | |     
| | | | |     added SG_UNREF where needed
| | | | |      
| * | | | commit 2d2fbf8433c9bfb0621a046dc7408aa49f15c2d8
|/ / / /  Author: Alesis Novik <alesisnov@gmail.com>
| | | |   Date:   Sun Jul 31 19:28:52 2011 +0100
| | | |   
| | | |       added SG_UNREF where needed
| | | |   
| | | |   M	src/shogun/clustering/GMM.cpp
| | | |       
* | | |   commit 380af5acf4bba4d7cb226fd9dc90ab625b2ac149
|\ \ \ \  Merge: a6586d5 f8fc62c
| |_|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Sun Jul 31 10:59:52 2011 -0700
| | | |   
| | | |       Merge pull request #252 from alesis/gmm
| | | |       
| | | |       Memory problem fixes.
| | | |     
| * | | commit f8fc62c7b365df87859be00ef74bde3c6d2b7cdd
| | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | Date:   Sun Jul 31 17:44:43 2011 +0100
| | | | 
| | | |     Removed copying
| | | | 
| | | | M	src/shogun/clustering/GMM.cpp
| | | |     
| * | | commit ef1a8954a1f5f44c159db1c544804a42273b2142
| | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | Date:   Sun Jul 31 07:18:07 2011 +0100
| | | | 
| | | |     Memory problem fixes.
| | | | 
| | | | M	src/shogun/clustering/GMM.cpp
| | | | M	src/shogun/clustering/GMM.h
| | | | M	src/shogun/distributions/Gaussian.h
| | | |       
* | | |   commit a6586d545c32c38ee414efd277d49f41bc8352a0
|\ \ \ \  Merge: fd09670 3ac5c53
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Sun Jul 31 05:20:11 2011 -0700
| | | | | 
| | | | |     Merge pull request #254 from karlnapf/master
| | | | |     
| | | | |     SGVector replacement
| | | | |      
| * | | | commit 3ac5c53a62eec98dd1d0b68a2dd80453755f9a1d
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Sun Jul 31 13:07:49 2011 +0200
| | | | | 
| | | | |     another SGVector replacement and usage of CMath::sqrt instead of std::sqrt
| | | | | 
| | | | | M	src/shogun/clustering/KMeans.cpp
| | | | | M	src/shogun/clustering/KMeans.h
| | | | |        
* | | | |   commit fd0967097e615f9f234f1a18c6269e89d57a2ab4
|\ \ \ \ \  Merge: 95f11a0 062af8b
| |/ / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | / / /   Date:   Sun Jul 31 04:06:47 2011 -0700
| |/ / /    
|/| | |         Merge pull request #253 from karlnapf/master
| | | |         
| | | |         made KMeans serializable and SGVector replacement
| | | |     
| * | | commit 062af8b5cc1b626cbd8dd5e285dd5e2b674528e8
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Jul 31 12:57:57 2011 +0200
| | | | 
| | | |     fix compile error
| | | | 
| | | | M	src/shogun/clustering/KMeans.cpp
| | | |     
| * | | commit 78148d3676caad5ad3680f7f14c1f68c9ec99de1
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Jul 31 12:49:38 2011 +0200
| | | | 
| | | |     more elegant SGVector allocation
| | | | 
| | | | M	src/shogun/clustering/KMeans.cpp
| | | |     
| * | | commit 32262864f75326adada6a12aac232d08468774fe
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Jul 31 12:32:51 2011 +0200
| | | | 
| | | |     usage of SGVector.destory
| | | | 
| | | | M	src/shogun/clustering/KMeans.cpp
| | | |     
| * | | commit 85f4bb68e68450cb7f47b2628cc454b0e8d5db07
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Jul 31 12:23:06 2011 +0200
| | | | 
| | | |     -moved initializations to init method
| | | |     -registration of parameters for serialization
| | | |     -replaced float64_t* R by SGVector
| | | | 
| | | | M	src/shogun/clustering/KMeans.cpp
| | | | M	src/shogun/clustering/KMeans.h
| | | |     
| * | | commit 75ef02a617a0c10ea670b8c711e569c2621406b2
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Jul 31 12:05:21 2011 +0200
| | | | 
| | | |     reset to old status, due to memory error
| | | | 
| | | | M	src/shogun/clustering/KMeans.cpp
| | | | M	src/shogun/clustering/KMeans.h
| | | |     
| * | | commit 77d3731951ecc458a3749c1b9e26649cd8adfc90
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Jul 31 11:52:46 2011 +0200
| | | | 
| | | |     Revert "added forgotten initialization"
| | | |     
| | | |     This reverts commit 372bb67d275882dcbf62d7926314e5d1ff9eeb07.
| | | | 
| | | | M	src/shogun/clustering/KMeans.cpp
| | | |     
| * | | commit 372bb67d275882dcbf62d7926314e5d1ff9eeb07
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Jul 31 11:49:49 2011 +0200
| | | | 
| | | |     added forgotten initialization
| | | | 
| | | | M	src/shogun/clustering/KMeans.cpp
| | | |     
| * | | commit cb88253f5fa09236ec651bc74564c8bf42ac3c5f
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Fri Jul 29 16:43:29 2011 +0200
| | |   
| | |       -added init method
| | |       -registered parameters
| | |       -usage of CMath::sqrt instead of ::sqrt
| | |       -replaced float64_t* R variable by SGVector<float64_t>
| | |   
| | |   M	src/shogun/clustering/KMeans.cpp
| | |   M	src/shogun/clustering/KMeans.h
| | |    
* | | commit 95f11a02929a4db4404c4bfdd0670d43cebf0610
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Jul 31 00:45:37 2011 +0200
| | | 
| | |     Hopefully fix compiler errors in GMM/Gaussian. Utilize destroy_*.
| | | 
| | | M	src/shogun/clustering/GMM.cpp
| | | M	src/shogun/clustering/GMM.h
| | | M	src/shogun/distributions/Gaussian.cpp
| | | M	src/shogun/distributions/Gaussian.h
| | | M	src/shogun/lib/DataType.h
| | |    
* | | commit 42595fa7a75037216c096aeb9879f265c37fdbfe
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Jul 31 00:45:26 2011 +0200
| | | 
| | |     use simple swig enums
| | | 
| | | M	src/interfaces/java_modular/swig_typemaps.i
| | |    
* | | commit 9ca6cc8ef09665423ee823bdeb165f3ac3274d18
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat Jul 30 23:49:44 2011 +0400
| | | 
| | |     Transitioned HLLE, LTSA and LLE to destroy_matrix routine usage
| | | 
| | | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | |    
* | | commit 6e05605bfa441ee3d86c5a5aa8fcb3d37f93bf78
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat Jul 30 23:49:03 2011 +0400
| | | 
| | |     Fixed ARPACK routine calling in ClassicMDS
| | | 
| | | M	src/shogun/preprocessor/ClassicMDS.cpp
| | |    
* | | commit 9a6e8ac46f26965c4aa2dafad84053ad4e4a5e01
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat Jul 30 23:48:37 2011 +0400
| | | 
| | |     Fixed wrong SG_FREE in ARPACK wrapper leading to segfault
| | | 
| | | M	src/shogun/mathematics/arpack.cpp
| | |    
* | | commit cbb8d246c4ce604ad523f7f808257fed51b0f0fd
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat Jul 30 17:41:04 2011 +0400
| | | 
| | |     Fixed regularization in LLE null-space routine, added posdef option
| | | 
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | |    
* | | commit 5f40ecc94d7970081f9fa5da70cc58ba6fccb8e6
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat Jul 30 17:40:10 2011 +0400
| | | 
| | |     Improved ARPACK wrapper doc
| | | 
| | | M	src/shogun/mathematics/arpack.cpp
| | | M	src/shogun/mathematics/arpack.h
| | |    
* | | commit 518360dc4d92852aa2f31dd986f902f98b309ba4
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat Jul 30 02:58:48 2011 +0400
| | | 
| | |     Added forgotten DGETRS define
| | | 
| | | M	src/shogun/mathematics/lapack.cpp
| | |    
* | | commit f1167d6343e7e947da8c92fd71deee3b3d32cbd8
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat Jul 30 01:42:53 2011 +0400
| | | 
| | |     Improved ARPACK performance by getting rid of matrix inverse
| | | 
| | | M	src/shogun/mathematics/arpack.cpp
| | |    
* | | commit 2c7f2531f27cc259ae43468d9f12cc34c1990d24
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat Jul 30 01:41:52 2011 +0400
| | | 
| | |     Added DPOTRS and DGETRS wrappers for LAPACK
| | | 
| | | M	src/shogun/mathematics/lapack.cpp
| | | M	src/shogun/mathematics/lapack.h
| | |      
* | |   commit 91831a1d5307c860f27910bc76127fe0c2e83b6b
|\ \ \  Merge: ccd86e9 c94f370
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Jul 29 10:02:25 2011 -0700
| | | | 
| | | |     Merge pull request #249 from karlnapf/master
| | | |     
| | | |     fix small issues
| | | |     
| * | | commit c94f3705178f992d98b2f75e527933daa25d6035
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 29 15:55:42 2011 +0200
| | | | 
| | | |     added parameter include
| | | | 
| | | | M	src/shogun/machine/DistanceMachine.cpp
| | | |     
| * | | commit 660b1805f3ba1476064b5390981dd327b952c9f9
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 29 15:54:18 2011 +0200
| | | | 
| | | |     store_model_features is now in header file
| | | | 
| | | | M	src/shogun/machine/DistanceMachine.cpp
| | | |     
| * | | commit 63fada6e196ece6f418e146d6b7ebd97c22783ef
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Fri Jul 29 15:53:06 2011 +0200
| | |   
| | |       added init method
| | |       made store_model_features do nothing
| | |   
| | |   M	src/shogun/machine/DistanceMachine.cpp
| | |   M	src/shogun/machine/DistanceMachine.h
| | |      
* | |   commit ccd86e93c704b6d1e53637039ab81310cdcaa84d
|\ \ \  Merge: 29575c9 af57ba7
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | /   Date:   Fri Jul 29 06:21:23 2011 -0700
| |/    
|/|         Merge pull request #248 from gsomix/master
| |         
| |         Arrays are replaced by SGVector in CGaussianNaiveBayes
| |   
| * commit af57ba7c3682fbbef3c80668bee31a7f3a583ce7
| | Author: Evgeniy Andreev <gsomix@gmail.com>
| | Date:   Fri Jul 29 16:13:21 2011 +0400
| | 
| |     Arrays is replaced by SGVector in CGaussianNaiveBayes
| | 
| | M	src/shogun/classifier/GaussianNaiveBayes.cpp
| | M	src/shogun/classifier/GaussianNaiveBayes.h
| |   
* | commit 29575c97d1af503136bd48221cff86355e1f7a30
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jul 29 13:47:56 2011 +0200
| | 
| |     add proper check.sh for csharp
| |     
| |     syntax is
| |     	./check.sh minimal_test.cs
| |     or just
| |     ./check.sh
| | 
| | A	examples/undocumented/csharp_modular/check.sh
| |     
* |   commit 37e9718706668604cdda9d1f69a20ca0ee3a6ba0
|\ \  Merge: 1510d31 576b6e8
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jul 29 04:32:26 2011 -0700
| | | 
| | |     Merge pull request #247 from karlnapf/master
| | |     
| | |     completely applied renaming train -> train_machine (was only done for KernelMachines before)
| | |    
| * | commit 576b6e80f6b284aa1f01cf3a9f8b84634b8a4642
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Fri Jul 29 13:21:01 2011 +0200
| |   
| |       renamed train method to train_machine and made it private in order to complete changes made to CMachine
| |   
| |   M	src/shogun/classifier/KNN.cpp
| |   M	src/shogun/classifier/KNN.h
| |   M	src/shogun/classifier/LDA.cpp
| |   M	src/shogun/classifier/LDA.h
| |   M	src/shogun/classifier/LPBoost.cpp
| |   M	src/shogun/classifier/LPBoost.h
| |   M	src/shogun/classifier/LPM.cpp
| |   M	src/shogun/classifier/LPM.h
| |   M	src/shogun/classifier/Perceptron.cpp
| |   M	src/shogun/classifier/Perceptron.h
| |   M	src/shogun/classifier/PluginEstimate.cpp
| |   M	src/shogun/classifier/PluginEstimate.h
| |   M	src/shogun/classifier/SubGradientLPM.cpp
| |   M	src/shogun/classifier/SubGradientLPM.h
| |   M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| |   M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.h
| |   M	src/shogun/classifier/svm/SVMLin.cpp
| |   M	src/shogun/classifier/svm/SVMLin.h
| |   M	src/shogun/classifier/svm/SVMOcas.cpp
| |   M	src/shogun/classifier/svm/SVMOcas.h
| |   M	src/shogun/classifier/svm/SVMSGD.cpp
| |   M	src/shogun/classifier/svm/SVMSGD.h
| |   M	src/shogun/classifier/svm/SubGradientSVM.cpp
| |   M	src/shogun/classifier/svm/SubGradientSVM.h
| |   M	src/shogun/classifier/svm/WDSVMOcas.cpp
| |   M	src/shogun/classifier/svm/WDSVMOcas.h
| |   M	src/shogun/clustering/Hierarchical.cpp
| |   M	src/shogun/clustering/Hierarchical.h
| |   M	src/shogun/clustering/KMeans.cpp
| |   M	src/shogun/clustering/KMeans.h
| |     
* |   commit 1510d315efcc4018dcbf47838a561ddc6a8d77cc
|\ \  Merge: 035f3cb 3ba5d3b
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Fri Jul 29 13:30:31 2011 +0200
| |   
| |       Merge branch 'master' of github.com:shogun-toolbox/shogun
| |     
| *   commit 3ba5d3b7fd505a444d5d8bdb6dd3595e5aa79aa2
| |\  Merge: 89bf991 dba50f2
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jul 29 03:35:46 2011 -0700
| | | 
| | |     Merge pull request #246 from karlnapf/master
| | |     
| | |     example corrections
| | |    
| | * commit dba50f2be70b444ea53778284c06ad878bcff047
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Fri Jul 29 11:31:23 2011 +0200
| |   
| |       -made search space smaller
| |       -removed stuff from stacdk to heap to be able to trace memory blocks
| |       -cleaned up comments
| |   
| |   M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| |   M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| |   M	examples/undocumented/libshogun/modelselection_grid_search_string_kernel.cpp
| |   
* | commit 035f3cbd443ae6eba756fb7cc609305ad90be90c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jul 29 13:30:13 2011 +0200
| | 
| |     fix minimal_test example to work with modshogun
| | 
| | M	examples/undocumented/csharp_modular/minimal_test.cs
| |   
* | commit 2d44753eb5506eb6415c5dfee71e082754cc83fb
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Fri Jul 29 13:29:02 2011 +0200
|   
|       fix compile csharp errors
|       
|       - made read_vector* variables protected such that there is no get_/set_
|       naming clash
|       - use same signature for get_num_vectors() in attributefeatures to fix warning
|   
|   M	src/shogun/features/AttributeFeatures.h
|   M	src/shogun/io/InputParser.h
|  
* commit 89bf991a142d09d55b2e99e171e3e655e0f90e90
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jul 29 10:46:08 2011 +0200
| 
|     introduce SGCachedVector prototype
| 
| M	src/shogun/lib/DataType.h
|    
*   commit 01b3fc30fe6a5a4926c0f750177efe8b7100610a
|\  Merge: 620037e 5ce74be
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jul 29 07:42:46 2011 +0200
| | 
| |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| |   
| * commit 5ce74beed864066a3506f85c2a5a1d0251f63e6b
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Jul 29 00:13:49 2011 +0400
| | 
| |     Some additions and fixes for NEWS
| | 
| | M	src/NEWS
| |   
* | commit 620037ed381d27a99b8dc2ce304b85fe58a0159d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jul 29 00:42:10 2011 +0200
| | 
| |     add single file test
| | 
| | M	examples/undocumented/ruby_modular/check.sh
| |   
* | commit 107276dba7c6f4cb8713b6e81a887f6f8dbada1d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jul 29 00:19:55 2011 +0200
| | 
| |     add a ruby examples check script
| | 
| | A	examples/undocumented/ruby_modular/check.sh
| |   
* | commit 5fab0e0ebf63105c7d92eccb654b3c1cb7fcf8fe
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Thu Jul 28 21:49:30 2011 +0200
|   
|       rename length -> slen to  match SGString change
|   
|   M	src/interfaces/java_modular/swig_typemaps.i
|   M	src/interfaces/lua_modular/swig_typemaps.i
|   M	src/interfaces/octave_modular/swig_typemaps.i
|   M	src/interfaces/r_modular/swig_typemaps.i
|   M	src/interfaces/ruby_modular/swig_typemaps.i
|  
* commit b2464db95dfe09f80c0203452dbe1504f91bad74
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 28 21:30:15 2011 +0200
| 
|     fix compile errors in static interfaces
| 
| M	src/interfaces/cmdline_static/CmdLineInterface.cpp
| M	src/interfaces/matlab_static/MatlabInterface.cpp
| M	src/interfaces/octave_static/OctaveInterface.cpp
| M	src/interfaces/r_static/RInterface.cpp
|  
* commit 1c631698486d9708d10e14f91743d095fa99e01d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 28 21:29:52 2011 +0200
| 
|     fix compile error in string subset example
| 
| M	examples/undocumented/libshogun/features_copy_subset_string_features.cpp
|    
*   commit 4c5fc86f761bd73f1c2423282da496d10de1f2f6
|\  Merge: a45b631 4172a45
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Jul 28 23:25:50 2011 +0400
| | 
| |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| |   
| * commit 4172a4540b588bb845764ab14c3b5f8868e6645d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jul 28 21:18:36 2011 +0200
| | 
| |     don't allocate objects on stack (this did evade the memory tracing)
| | 
| | M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| |   
| * commit c8fa3276755a73ff426dd10ecd7ddc3aeeb10dfc
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jul 28 20:58:55 2011 +0200
| | 
| |     fix compile error in static python interface
| | 
| | M	src/interfaces/python_static/PythonInterface.cpp
| |   
* | commit a45b631cc43de354310f4d3ece5414b9fdd11399
|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|   Date:   Thu Jul 28 23:25:17 2011 +0400
|   
|       DSYEVR for LLE
|   
|   M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
|    
*   commit 72b9bef392f25fd1f0971367b0d574359700d112
|\  Merge: 5f296e7 625600e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jul 28 11:24:52 2011 -0700
| | 
| |     Merge pull request #245 from karlnapf/master
| |     
| |     model selection for string kernels
| |   
| * commit 625600e3b49f7ae97a665ad630d1fda88b4a5c3a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 18:44:26 2011 +0200
| | 
| |     added more meaningful not implemented message
| | 
| | M	src/shogun/features/Features.h
| |   
| * commit 4bfd1b6c29b2220209a5f7c6e0cb35e57c096a15
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 18:39:28 2011 +0200
| | 
| |     made example smaller
| | 
| | M	examples/undocumented/python_modular/modelselection_grid_search_linear_modular.py
| |   
| * commit f19b158af48a2a5ab247d3cb7fe3c954d19f47c4
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 18:39:04 2011 +0200
| | 
| |     renamed example
| | 
| | A	examples/undocumented/python_modular/modelselection_grid_search_linear_modular.py
| | D	examples/undocumented/python_modular/modelselection_grid_search_simple_modular.py
| |   
| * commit b0c7e3348e4d4ef02b7d74abe005cc3929b23c6e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 18:30:51 2011 +0200
| | 
| |     made example smaller
| | 
| | M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| |   
| * commit ace078bfb20041708aff0d91f06ca43ba4e84181
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 18:22:22 2011 +0200
| | 
| |     renamed SGString::length to slen
| | 
| | M	src/interfaces/python_modular/swig_typemaps.i
| |   
| * commit 1f1939eab22cad23e04ca2245335b75fdeaeabc2
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 18:11:32 2011 +0200
| | 
| |     made example smaller
| | 
| | M	examples/undocumented/libshogun/modelselection_grid_search_string_kernel.cpp
| |   
| * commit bf37785f24b88aa24c117841631954c6280ec1bc
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 17:37:12 2011 +0200
| | 
| |     made example work
| | 
| | M	examples/undocumented/libshogun/features_copy_subset_string_features.cpp
| |   
| * commit 66e0302cee13d6af04a8714876e6124ff8cf2e09
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 17:24:54 2011 +0200
| | 
| |     added example of grid search using a string kernel
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/modelselection_grid_search_string_kernel.cpp
| |   
| * commit e72835a056db2f3995ac75cbcd602944bb15eecb
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 17:23:42 2011 +0200
| | 
| |     added test for copy_subset on StringFeatures
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/features_copy_subset_string_features.cpp
| |   
| * commit 46f5ff5e2b2c1bd7458c044add08807ae8f87e1e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 16:46:18 2011 +0200
| | 
| |     undone changes according to chat with soeren
| | 
| | M	src/shogun/features/StringFeatures.h
| |   
| * commit 257c54d8a3bbecefb24126772a59603578606285
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 16:19:55 2011 +0200
| | 
| |     white space change
| | 
| | M	src/shogun/features/Subset.cpp
| |   
| * commit 3e5ce23993394e788ae00d271a34812ee720718a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 16:11:31 2011 +0200
| | 
| |     -more fixes towards working copy_subset method
| |     -get_feature_vector now returns a copy of an SGString with do_free=true
| | 
| | M	src/shogun/features/StringFeatures.h
| |   
| * commit e1a4965d0e929493978f5495dd0bcbc4b08b4736
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:48:24 2011 +0200
| | 
| |     fix compile error
| | 
| | M	src/shogun/features/StringFeatures.h
| |   
| * commit 5a777a66a81bdbacfc6f2911083103a9a123e437
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:47:32 2011 +0200
| | 
| |     removed unnecessary logcal check
| | 
| | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| |   
| * commit 32476c995e4064365c3dc8936b17832ddfc3a83a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:47:20 2011 +0200
| | 
| |     copy_subset did not really copy data but reference ->memerror. fixed
| | 
| | M	src/shogun/features/StringFeatures.h
| |   
| * commit e62c95415ae29fdd20539c335692f84d897e5acb
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:46:49 2011 +0200
| | 
| |     removed display method (have to think about this some more)
| | 
| | M	src/shogun/lib/DataType.h
| |   
| * commit f27ace85e966d09323d581d1768e71ca1e1713a7
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:29:10 2011 +0200
| | 
| |     renamed SGString::length to slen
| | 
| | M	src/shogun/features/StringFileFeatures.h
| |   
| * commit 9fdee0d0cdb36333d3885f4080d1be304f9f0ac9
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:14:48 2011 +0200
| | 
| |     renamed SGString::length to slen
| | 
| | M	src/shogun/features/StreamingStringFeatures.h
| |   
| * commit 95d79b28db086f6ed82956dd55a04780eed4a0d8
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:12:17 2011 +0200
| | 
| |     renamed SGString::length to slen
| | 
| | M	src/shogun/base/Parameter.cpp
| |   
| * commit ec4c2106253ca38f9053a25e866903f5e8fa1f23
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:10:13 2011 +0200
| | 
| |     renamed SGVector::length to slen
| | 
| | M	src/shogun/kernel/SpectrumRBFKernel.cpp
| |   
| * commit 250b0023d9316ece17d3596acdf83d8fcef1cadf
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:04:58 2011 +0200
| | 
| |     renamed SGString::length to slen
| | 
| | M	src/shogun/io/AsciiFile.cpp
| |   
| * commit 6e2a26082d229082902a4560a4fccc4ee1cda765
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:04:03 2011 +0200
| | 
| |     renamed SGString::length to slen
| | 
| | M	src/shogun/io/BinaryFile.cpp
| |   
| * commit 3cc585a5df97311aeb7ac83c15a12d82f3393ae1
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:03:10 2011 +0200
| | 
| |     renamed SGString::length to slen
| | 
| | M	src/shogun/io/File.cpp
| |   
| * commit db0295d210db6124c8866166f97129b3f0809618
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:02:03 2011 +0200
| | 
| |     renamed SGString::length to slen
| | 
| | M	src/shogun/ui/SGInterface.cpp
| |   
| * commit ef6032885285a79f4d0b0283bea6b18ea95f3c5e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:01:25 2011 +0200
| | 
| |     renamed SGString.length to slen
| |     added display method for SGString
| | 
| | M	src/shogun/lib/DataType.h
| |   
| * commit 5737a842e8bd99554881c86be700b8dd66aa922d
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:01:08 2011 +0200
| | 
| |     renamed length field of SGString to slen
| | 
| | M	src/shogun/features/StringFeatures.h
| | M	src/shogun/ui/GUIFeatures.cpp
| |   
| * commit c48b1312a826a4d6708ff6dbe3aeed5d14d35b72
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 13:34:54 2011 +0200
| | 
| |     work towards supporting model storage
| | 
| | M	src/shogun/machine/DistanceMachine.cpp
| | M	src/shogun/machine/DistanceMachine.h
| |   
| * commit dca186c2fd828dbcfdf805dabd7a2f9ecce47c3b
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jul 27 18:05:48 2011 +0200
| | 
| |     usage of SG_FREE instead of delete
| | 
| | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| |   
| * commit 4cfabaa75174d23dd4e9a8d357f706b6a1eaf992
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jul 27 18:03:59 2011 +0200
| | 
| |     SGVector usage
| | 
| | M	src/shogun/classifier/KNN.cpp
| | M	src/shogun/classifier/KNN.h
| |   
| * commit 070b2c290299c273ddbaa95689478bffc4b43cca
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jul 27 17:55:21 2011 +0200
| | 
| |     removed unnecessary ASSERT
| | 
| | M	src/shogun/classifier/KNN.cpp
| |   
| * commit e8934c6c3d6cce90c322d1b40a259d5dbd539219
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Wed Jul 27 17:53:13 2011 +0200
|   
|       removed unnecessary ASSERTs
|   
|   M	src/shogun/classifier/KNN.cpp
|  
* commit 5f296e7885667071409c47300c54b67bb1f7991d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 28 17:06:30 2011 +0200
| 
|     print leaks on exit when configure with --enable-trace-mallocs and do
|     proper cleanup
| 
| M	src/shogun/base/DynArray.h
| M	src/shogun/base/init.cpp
|    
*   commit d3602de6dc7b55ba0bb8142cf700dcd0664c9f2d
|\  Merge: 8bc3d93 a57a098
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jul 28 03:37:36 2011 -0700
| | 
| |     Merge pull request #244 from sploving/master
| |     
| |     add some ruby examples
| |   
| * commit a57a098fda4d2a21c20af2a07b56b3ba6eefb16a
| | Author: Baozeng Ding <sploving1@gmail.com>
| | Date:   Thu Jul 28 15:57:35 2011 +0800
| | 
| |     add kernel_gaussian_modular.rb
| | 
| | A	examples/undocumented/ruby_modular/kernel_gaussian_modular.rb
| |   
| * commit eb2cd3b7fff35211769564ae999dcd25c1aeeaa1
| | Author: Baozeng Ding <sploving1@gmail.com>
| | Date:   Thu Jul 28 15:57:01 2011 +0800
| | 
| |     add kernel_comm_word_string_modular.rb example
| | 
| | A	examples/undocumented/ruby_modular/kernel_comm_word_string_modular.rb
| |   
| * commit 216347d82db319ba724d720e92ec82791e2907c1
| | Author: Baozeng Ding <sploving1@gmail.com>
| | Date:   Thu Jul 28 15:55:14 2011 +0800
| | 
| |     add load.rb file
| | 
| | A	examples/undocumented/ruby_modular/load.rb
| |   
| * commit 485e7bde75ef0214b48b27afb10e5bcf6e60ffdf
| | Author: Baozeng Ding <sploving1@gmail.com>
| | Date:   Thu Jul 28 15:25:55 2011 +0800
| | 
| |     add kerenle_comm_ulong_string_modular.rb
| | 
| | A	examples/undocumented/ruby_modular/kernel_comm_ulong_string_modular.rb
| |   
| * commit 4a71946d4f84fe9f220d546ea1698643b9f1d33d
| | Author: Baozeng Ding <sploving1@gmail.com>
| | Date:   Thu Jul 28 14:43:40 2011 +0800
| | 
| |     add typecheck for stringlist
| | 
| | M	src/interfaces/ruby_modular/swig_typemaps.i
| |   
* | commit 8bc3d93c5fbb28609d061a7140529e874e3aa7b6
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Jul 28 03:47:26 2011 +0400
| | 
| |     Cleaned lapack wrappers
| | 
| | M	src/shogun/mathematics/lapack.cpp
| |   
* | commit 0238667449394761a104560c33973a7c02c7975e
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Jul 28 03:45:09 2011 +0400
| | 
| |     Changed MDS solver to DSYEVR
| | 
| | M	src/shogun/preprocessor/ClassicMDS.cpp
| |   
* | commit 5286e9425b20f0f1dd89365208b8220ad2b4c562
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Jul 28 03:43:40 2011 +0400
| | 
| |     Added wrapper for DSYEVR lapack routine
| | 
| | M	src/shogun/mathematics/lapack.cpp
| | M	src/shogun/mathematics/lapack.h
| |     
* |   commit 57066ac8ec89a73253a7a21e8d9f215efb9aae55
|\ \  Merge: 1454579 fc63d7f
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Jul 28 00:05:39 2011 +0200
| | | 
| | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | |      
| * |   commit fc63d7f69f2ba5e38845d5c917a28b2249081949
| |\ \  Merge: ec69179 dbf8677
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Jul 27 08:39:20 2011 -0700
| | | | 
| | | |     Merge pull request #243 from karlnapf/master
| | | |     
| | | |     replacement for new
| | | |     
| | * | commit dbf8677d0af2ea7e402daf9cf86ee4f9b6afbf67
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 17:35:53 2011 +0200
| | | | 
| | | |     moved the store_model_features method from LibLinear to LinearMachine. Now all linear machines support model selection
| | | | 
| | | | M	src/shogun/classifier/svm/LibLinear.h
| | | | M	src/shogun/machine/LinearMachine.h
| | | |     
| | * | commit 4820267aaf94fc47ed657e1f1f9d598d957a84fd
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 17:18:42 2011 +0200
| | | | 
| | | |     made LibLinear support model selection again
| | | | 
| | | | M	src/shogun/classifier/svm/LibLinear.cpp
| | | | M	src/shogun/classifier/svm/LibLinear.h
| | | |     
| | * | commit b5bc9c3257054d93bb0de93e908d0d586e4e6dd6
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 17:18:25 2011 +0200
| | | | 
| | | |     added a more meaningfull error message
| | | | 
| | | | M	src/shogun/machine/Machine.h
| | | |     
| | * | commit 52bcd9c2a79da37bcaff60a0dedc80b3aa9054be
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 15:44:52 2011 +0200
| | | | 
| | | |     made example smaller and removed set_store_sv_features call (is in CrossValidation now)
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | | |     
| | * | commit c7587344b47f5b8fceb0a5da8ff99e2662687b85
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 15:35:14 2011 +0200
| | | | 
| | | |     removed name clash and added forgotten return value
| | | | 
| | | | M	src/shogun/machine/Machine.h
| | | |     
| | * | commit 4a66e226cf8d4368077e536b826b2825d101cc06
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 15:34:59 2011 +0200
| | | | 
| | | |     tell machine to store model before starting x-validation
| | | | 
| | | | M	src/shogun/evaluation/CrossValidation.cpp
| | | |     
| | * | commit 60ec8f566bad9759a46ea8045ba91382849e349b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 15:28:16 2011 +0200
| | | | 
| | | |     moved store_model flag from CKernelMachine to CMachine
| | | | 
| | | | M	src/shogun/machine/KernelMachine.cpp
| | | | M	src/shogun/machine/KernelMachine.h
| | | | M	src/shogun/machine/Machine.cpp
| | | | M	src/shogun/machine/Machine.h
| | | |     
| | * | commit f211b25bc962973df099febbf2d5c4773d151a87
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 15:19:46 2011 +0200
| | | | 
| | | |     renamed variable
| | | | 
| | | | M	src/shogun/machine/Machine.h
| | | |     
| | * | commit 8296a9ac693d1b361483745e7c9b1f458256e72b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 15:19:35 2011 +0200
| | | | 
| | | |     directly use math.h function
| | | | 
| | | | M	src/shogun/mathematics/Math.h
| | | |     
| | * | commit 872919bd987db95d7275324a95c9a419648d80bc
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 15:13:55 2011 +0200
| | | | 
| | | |     renamed train_kernel_machine to train_machine due to the method is now defined in CMachine instead of CKernelMachine
| | | | 
| | | | M	src/shogun/classifier/mkl/MKL.cpp
| | | | M	src/shogun/classifier/mkl/MKL.h
| | | | M	src/shogun/classifier/mkl/MKLMultiClass.cpp
| | | | M	src/shogun/classifier/mkl/MKLMultiClass.h
| | | | M	src/shogun/classifier/svm/CPLEXSVM.cpp
| | | | M	src/shogun/classifier/svm/CPLEXSVM.h
| | | | M	src/shogun/classifier/svm/DomainAdaptationSVM.cpp
| | | | M	src/shogun/classifier/svm/DomainAdaptationSVM.h
| | | | M	src/shogun/classifier/svm/GMNPSVM.cpp
| | | | M	src/shogun/classifier/svm/GMNPSVM.h
| | | | M	src/shogun/classifier/svm/GNPPSVM.cpp
| | | | M	src/shogun/classifier/svm/GNPPSVM.h
| | | | M	src/shogun/classifier/svm/GPBTSVM.cpp
| | | | M	src/shogun/classifier/svm/GPBTSVM.h
| | | | M	src/shogun/classifier/svm/LaRank.cpp
| | | | M	src/shogun/classifier/svm/LaRank.h
| | | | M	src/shogun/classifier/svm/LibSVM.cpp
| | | | M	src/shogun/classifier/svm/LibSVM.h
| | | | M	src/shogun/classifier/svm/LibSVMMultiClass.cpp
| | | | M	src/shogun/classifier/svm/LibSVMMultiClass.h
| | | | M	src/shogun/classifier/svm/LibSVMOneClass.cpp
| | | | M	src/shogun/classifier/svm/LibSVMOneClass.h
| | | | M	src/shogun/classifier/svm/MPDSVM.cpp
| | | | M	src/shogun/classifier/svm/MPDSVM.h
| | | | M	src/shogun/classifier/svm/SVMLight.cpp
| | | | M	src/shogun/classifier/svm/SVMLight.h
| | | | M	src/shogun/classifier/svm/SVMLightOneClass.cpp
| | | | M	src/shogun/classifier/svm/SVMLightOneClass.h
| | | | M	src/shogun/classifier/svm/ScatterSVM.cpp
| | | | M	src/shogun/classifier/svm/ScatterSVM.h
| | | | M	src/shogun/regression/KRR.cpp
| | | | M	src/shogun/regression/KRR.h
| | | | M	src/shogun/regression/svr/LibSVR.cpp
| | | | M	src/shogun/regression/svr/LibSVR.h
| | | | M	src/shogun/regression/svr/SVRLight.cpp
| | | | M	src/shogun/regression/svr/SVRLight.h
| | | |     
| | * | commit 060555b421f446d4e9f60d90ce0b4d02590669e4
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 15:13:14 2011 +0200
| | | | 
| | | |     moved model storage code to CMachine
| | | | 
| | | | M	src/shogun/machine/KernelMachine.h
| | | |     
| | * | commit b763c092209e2842fb5720fcef6eec2c7363f14b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 15:12:57 2011 +0200
| | | | 
| | | |     moved train_machine and model storage flag here from KernelMachine
| | | | 
| | | | M	src/shogun/machine/Machine.h
| | | |     
| | * | commit c8ce7adf0edf755347c9a41e9fc45250e2f65685
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 14:57:00 2011 +0200
| | | | 
| | | |     fixed a failed assertion due to wrong pow method selection when having two integers as arguments
| | | | 
| | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | |     
| | * | commit 436995926e5fe628f47e8f3b597288210d765a2b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 14:52:44 2011 +0200
| | | | 
| | | |     Revert "extended pow method to take negative exponents"
| | | |     
| | | |     This reverts commit 473327f146943c1d5d2954fec39f764e6ebafa65.
| | | | 
| | | | M	src/shogun/mathematics/Math.h
| | | |     
| | * | commit 473327f146943c1d5d2954fec39f764e6ebafa65
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 14:51:27 2011 +0200
| | | | 
| | | |     extended pow method to take negative exponents
| | | | 
| | | | M	src/shogun/mathematics/Math.h
| | | |     
* | | | commit 14545797611459782da964cb59559e79063f3464
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| |   Date:   Thu Jul 28 00:03:04 2011 +0200
| | |   
| | |       enable memory tracing when compiled with --enable-trace-mallocs
| | |       just call CSGObject::list_memory_allocs() or list_memory_allocs() if
| | |       you've include lib/memory.h
| | |   
| | |   M	src/shogun/base/DynArray.h
| | |   M	src/shogun/base/SGObject.cpp
| | |   M	src/shogun/base/SGObject.h
| | |   M	src/shogun/base/init.cpp
| | |   M	src/shogun/lib/Set.h
| | |   M	src/shogun/lib/memory.cpp
| | |   M	src/shogun/lib/memory.h
| | |    
* | | commit 0e5b6781c5e6c8a98819a2164012401cdac17c4f
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jul 27 14:44:26 2011 +0200
| | | 
| | |     pow(float, int) now also takes exponents smaller than zero
| | | 
| | | M	src/shogun/mathematics/Math.h
| | |    
* | | commit b4a845225fd354c9a2bfa3293d5b91c3c246b690
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Wed Jul 27 14:35:59 2011 +0200
| |   
| |       replaced new by SG_MALLOC
| |   
| |   M	src/shogun/lib/DataType.h
| |   
* | commit ec69179210b7d8f4587de129f3ebb726daeeaf01
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Jul 27 16:21:15 2011 +0400
| | 
| |     Added HLLE and LTSA to swissroll graphical example
| | 
| | M	examples/undocumented/python_modular/graphical/dimreduct/swissroll.py
| |   
* | commit 34dfe53d8f3ec7eebbfd8cf6cd84aa5317a3ecc2
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Jul 27 16:00:45 2011 +0400
| | 
| |     Removed note about octave crash from FAQ
| | 
| | M	doc/pages/FAQ.mainpage
| |   
* | commit 9df895b9b474c21f6d2486c547a3f5262e8316d5
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jul 27 13:13:56 2011 +0200
| | 
| |     fix mistake in string data type
| | 
| | M	src/shogun/lib/DataType.h
| |     
* |   commit 440c5efb2787654db9db583a44514cef20d8fc81
|\ \  Merge: 7821411 637aa52
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jul 27 12:59:36 2011 +0200
| | | 
| | |     Merge branch 'master' of git://github.com/karlnapf/shogun
| | |      
| * |   commit 637aa52f782c150393046d9c8de60aac14e3bb04
| |\ \  Merge: 76081df 37dce37
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 12:49:30 2011 +0200
| | | | 
| | | |     Merge branch 'master' of github.com:karlnapf/shogun
| | | |       
| | * |   commit 37dce37c4a55c41149d58e630aad3961db826ac3
| | |\ \  Merge: cb70e27 2bd248e
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jul 27 12:19:15 2011 +0200
| | | | | 
| | | | |     Merge branch 'master' of github.com:karlnapf/shogun
| | | | |      
| | | * | commit 2bd248ea4837b0d0100f942ab9af72d26f34c680
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:25:37 2011 +0200
| | | | | 
| | | | |     method calls should remain float64, not in integer type
| | | | | 
| | | | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | | | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | | | | M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| | | | | M	examples/undocumented/libshogun/modelselection_model_selection_parameters_test.cpp
| | | | |      
| | | * | commit fe4490e47e59122f1b433b67f3b316fb1f6284c9
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:24:56 2011 +0200
| | | | | 
| | | | |     class is now able to take multiple types of values.
| | | | |     currently float64_t and int32_t are implemented
| | | | | 
| | | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | | |      
| | | * | commit fd77e3477bbf04f2ddb90b999a2108cbc1c53b55
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:13:19 2011 +0200
| | | | | 
| | | | |     work towards handling of multiple data types
| | | | | 
| | | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | | |      
| | | * | commit 965a8ca2a3f75211106153aada1dccdf97fe930d
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:12:05 2011 +0200
| | | | | 
| | | | |     print method now handles different data types
| | | | | 
| | | | | M	src/shogun/modelselection/ParameterCombination.cpp
| | | | |      
| | | * | commit d37a0d4c81f9df5c6cc9742c751fa3ede7a65a9f
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:06:55 2011 +0200
| | | | | 
| | | | |     added constructors for SGStringList and SGString
| | | | | 
| | | | | M	src/shogun/lib/DataType.h
| | | | |      
| | | * | commit c3756726f7c7870bc098fbbd146d678c2794edac
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:06:39 2011 +0200
| | | | | 
| | | | |     added copy_subset implementation
| | | | | 
| | | | | M	src/shogun/features/StringFeatures.h
| | | | |      
| | | * | commit 4d1e64ea57d208295b25bad5b6dbfddab2f01da7
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:06:22 2011 +0200
| | | | | 
| | | | |     added comment
| | | | | 
| | | | | M	src/shogun/features/SimpleFeatures.h
| | | | |      
| | * | | commit cb70e27319e6277db67b5ff3174c13767ac80fef
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:25:37 2011 +0200
| | | | | 
| | | | |     method calls should remain float64, not in integer type
| | | | | 
| | | | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | | | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | | | | M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| | | | | M	examples/undocumented/libshogun/modelselection_model_selection_parameters_test.cpp
| | | | |      
| | * | | commit c2afee0648f4255631710db70c1dd684650c24a6
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:24:56 2011 +0200
| | | | | 
| | | | |     class is now able to take multiple types of values.
| | | | |     currently float64_t and int32_t are implemented
| | | | | 
| | | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | | |      
| | * | | commit 9a118f918f5a009c83e794ee3576d90d29394ea4
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jul 27 12:16:55 2011 +0200
| | | | | 
| | | | |     merge of current upstream
| | | | | 
| | | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | | |      
| | * | | commit 53e86bb94103f86c0c53327ff23e16790907cf8b
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:12:05 2011 +0200
| | | | | 
| | | | |     print method now handles different data types
| | | | | 
| | | | | M	src/shogun/modelselection/ParameterCombination.cpp
| | | | |      
| | * | | commit 0322ee178e61518a92c925f69a729f1b3728068d
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:06:55 2011 +0200
| | | | | 
| | | | |     added constructors for SGStringList and SGString
| | | | | 
| | | | | M	src/shogun/lib/DataType.h
| | | | |      
| | * | | commit 7d4b026f2da1d0d60637c6446eee5fdcb318f75c
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:06:39 2011 +0200
| | | | | 
| | | | |     added copy_subset implementation
| | | | | 
| | | | | M	src/shogun/features/StringFeatures.h
| | | | |      
| | * | | commit 43f699ff4529d6ebf09a1d26a1e6e38ed086d316
| | | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |/|   Date:   Tue Jul 26 00:06:22 2011 +0200
| | | |   
| | | |       added comment
| | | |   
| | | |   M	src/shogun/features/SimpleFeatures.h
| | | |     
| * | | commit 76081dfa9fc96978575295e7e0a8a7d4db19faba
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 26 00:24:56 2011 +0200
| | | | 
| | | |     class is now able to take multiple types of values.
| | | |     currently float64_t and int32_t are implemented
| | | | 
| | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | |     
| * | | commit 171a0f21887221c81c4bb43c05a64d244f588fb6
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 12:16:55 2011 +0200
| | | | 
| | | |     merge of current upstream
| | | | 
| | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | |     
| * | | commit 1e259a959d14ae925aaadbcda6db026cdb058e82
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 26 00:25:37 2011 +0200
| | | | 
| | | |     method calls should remain float64, not in integer type
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| | | | M	examples/undocumented/libshogun/modelselection_model_selection_parameters_test.cpp
| | | |     
| * | | commit 85dbe9ddde75fea583c70c61b2a3fdd4e407cbf3
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 26 00:24:56 2011 +0200
| | | | 
| | | |     class is now able to take multiple types of values.
| | | |     currently float64_t and int32_t are implemented
| | | | 
| | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | |     
| * | | commit e2c9030e0c33189763e5f1dda9f05fb9565e1623
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 26 00:13:19 2011 +0200
| | | | 
| | | |     work towards handling of multiple data types
| | | | 
| | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | |     
| * | | commit cd32001298a7fdf2216f9225ab29cc159f2fd781
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 26 00:12:05 2011 +0200
| | | | 
| | | |     print method now handles different data types
| | | | 
| | | | M	src/shogun/modelselection/ParameterCombination.cpp
| | | |     
| * | | commit 0d06cb4fd96b87f49030a747054c7cff021e7dfb
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 26 00:06:55 2011 +0200
| | | | 
| | | |     added constructors for SGStringList and SGString
| | | | 
| | | | M	src/shogun/lib/DataType.h
| | | |     
| * | | commit cfa2699907cc8a2d923e363bd1a9b31489e7e188
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 26 00:06:39 2011 +0200
| | | | 
| | | |     added copy_subset implementation
| | | | 
| | | | M	src/shogun/features/StringFeatures.h
| | | |     
| * | | commit b358503181d09816525573c811e42141111c1db3
| |/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Tue Jul 26 00:06:22 2011 +0200
| | |   
| | |       added comment
| | |   
| | |   M	src/shogun/features/SimpleFeatures.h
| | |    
* | | commit 7821411c082cab87afb162564431bca82df0d845
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Wed Jul 27 10:26:00 2011 +0200
| |   
| |       include GSoC student contributions in NEWS / CONTRIBUTIONS
| |   
| |   M	src/CONTRIBUTIONS
| |   M	src/NEWS
| |     
* |   commit 9bb26bc315ab8d8645391df3ab87c2a3538985d2
|\ \  Merge: 8f5a9eb b61710c
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jul 27 01:41:25 2011 +0200
| | | 
| | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | |    
| * | commit b61710c72ab5550c7a6b859a1f93e85ff65fc3b4
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Jul 27 03:03:21 2011 +0400
| | | 
| | |     Fixed HLLE python example and added LTSA one
| | | 
| | | M	examples/undocumented/python_modular/preprocessor_hessianlocallylinearembedding_modular.py
| | | A	examples/undocumented/python_modular/preprocessor_localtangentspacealignment_modular.py
| | |    
| * | commit 16acbc2a648c7c522badba20e76849c0107e7ea0
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Jul 27 02:34:05 2011 +0400
| | | 
| | |     SG_CALLOC usage for LLE and HLLE
| | | 
| | | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | |    
| * | commit 5918132d0383e371969afc9afb7593891bb08ba0
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Jul 27 02:32:12 2011 +0400
| | | 
| | |     Introduced Local Tangent Space Alignment preprocessor
| | | 
| | | M	src/interfaces/modular/Preprocessor.i
| | | M	src/interfaces/modular/Preprocessor_includes.i
| | | A	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| | | A	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| | | M	src/shogun/preprocessor/Preprocessor.h
| | |    
* | | commit 8f5a9ebd403f0cedd97c21f95f385769ec532a32
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jul 27 01:40:47 2011 +0200
| | | 
| | |     get TRACE_MALLOCS to compile again (but still crashes for some reason)
| | | 
| | | M	src/shogun/base/DynArray.h
| | | M	src/shogun/base/init.cpp
| | | M	src/shogun/lib/Set.h
| | | M	src/shogun/lib/common.h
| | | M	src/shogun/lib/memory.cpp
| | | M	src/shogun/lib/memory.h
| | | M	src/shogun/ui/SGInterface.cpp
| | |    
* | | commit 91c9490d766564d8a82947f5b4cbc362319315b9
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jul 27 01:40:02 2011 +0200
| | | 
| | |     get the ruby examples to work again
| | | 
| | | M	examples/undocumented/ruby_modular/MatrixTest.rb
| | | M	examples/undocumented/ruby_modular/VectorTest.rb
| | | M	examples/undocumented/ruby_modular/classifier_libsvm_minimal_modular.rb
| | | M	examples/undocumented/ruby_modular/minimal_test.rb
| | |    
* | | commit 1a6d8f2a1dbc6ea95687bb6f17266d96f091f8d9
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Tue Jul 26 23:43:47 2011 +0200
| |   
| |       hide makefile generation
| |   
| |   M	src/Makefile
| |   
* | commit 8431a6db403e11a7b0b678bb348ba5a35b70e0b6
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 26 22:58:06 2011 +0200
| | 
| |     examples all run trough nicely, so rename SG_MALLOCX -> SG_MALLOC
| | 
| | M	examples/undocumented/libshogun/classifier_libsvm.cpp
| | M	examples/undocumented/libshogun/classifier_minimal_svm.cpp
| | M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| | M	examples/undocumented/libshogun/kernel_gaussian.cpp
| | M	examples/undocumented/libshogun/kernel_revlin.cpp
| | M	examples/undocumented/libshogun/library_indirect_object.cpp
| | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| | M	examples/undocumented/libshogun/parameter_iterate_float64.cpp
| | M	examples/undocumented/libshogun/parameter_iterate_sgobject.cpp
| | M	examples/undocumented/libshogun/parameter_set_from_parameters.cpp
| | M	examples/undocumented/libshogun/preproc_randomfouriergauss.cpp
| | M	examples/undocumented/libshogun/streaming_from_simple.cpp
| | M	src/interfaces/cmdline_static/CmdLineInterface.cpp
| | M	src/interfaces/csharp_modular/swig_typemaps.i
| | M	src/interfaces/java_modular/swig_typemaps.i
| | M	src/interfaces/lua_modular/swig_typemaps.i
| | M	src/interfaces/matlab_static/MatlabInterface.cpp
| | M	src/interfaces/octave_modular/swig_typemaps.i
| | M	src/interfaces/octave_static/OctaveInterface.cpp
| | M	src/interfaces/python_modular/swig_typemaps.i
| | M	src/interfaces/python_static/PythonInterface.cpp
| | M	src/interfaces/r_modular/swig_typemaps.i
| | M	src/interfaces/r_static/RInterface.cpp
| | M	src/interfaces/ruby_modular/swig_typemaps.i
| | M	src/shogun/base/Parameter.cpp
| | M	src/shogun/classifier/AveragedPerceptron.cpp
| | M	src/shogun/classifier/GaussianNaiveBayes.cpp
| | M	src/shogun/classifier/KNN.cpp
| | M	src/shogun/classifier/LDA.cpp
| | M	src/shogun/classifier/LPBoost.cpp
| | M	src/shogun/classifier/LPM.cpp
| | M	src/shogun/classifier/Perceptron.cpp
| | M	src/shogun/classifier/PluginEstimate.cpp
| | M	src/shogun/classifier/SubGradientLPM.cpp
| | M	src/shogun/classifier/mkl/MKL.cpp
| | M	src/shogun/classifier/mkl/MKLMultiClass.cpp
| | M	src/shogun/classifier/mkl/MKLMultiClassGLPK.cpp
| | M	src/shogun/classifier/svm/CPLEXSVM.cpp
| | M	src/shogun/classifier/svm/DomainAdaptationSVM.cpp
| | M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | M	src/shogun/classifier/svm/GMNPLib.cpp
| | M	src/shogun/classifier/svm/GMNPSVM.cpp
| | M	src/shogun/classifier/svm/GNPPLib.cpp
| | M	src/shogun/classifier/svm/GNPPSVM.cpp
| | M	src/shogun/classifier/svm/GPBTSVM.cpp
| | M	src/shogun/classifier/svm/LaRank.cpp
| | M	src/shogun/classifier/svm/LibLinear.cpp
| | M	src/shogun/classifier/svm/LibSVM.cpp
| | M	src/shogun/classifier/svm/LibSVMMultiClass.cpp
| | M	src/shogun/classifier/svm/LibSVMOneClass.cpp
| | M	src/shogun/classifier/svm/MPDSVM.cpp
| | M	src/shogun/classifier/svm/MultiClassSVM.cpp
| | M	src/shogun/classifier/svm/QPBSVMLib.cpp
| | M	src/shogun/classifier/svm/SGDQN.cpp
| | M	src/shogun/classifier/svm/SVM.cpp
| | M	src/shogun/classifier/svm/SVMLight.cpp
| | M	src/shogun/classifier/svm/SVMLin.cpp
| | M	src/shogun/classifier/svm/SVMOcas.cpp
| | M	src/shogun/classifier/svm/SVMSGD.cpp
| | M	src/shogun/classifier/svm/SVM_libsvm.cpp
| | M	src/shogun/classifier/svm/SVM_linear.cpp
| | M	src/shogun/classifier/svm/ScatterSVM.cpp
| | M	src/shogun/classifier/svm/SubGradientSVM.cpp
| | M	src/shogun/classifier/svm/Tron.cpp
| | M	src/shogun/classifier/svm/WDSVMOcas.cpp
| | M	src/shogun/classifier/svm/pr_loqo.cpp
| | M	src/shogun/classifier/svm/ssl.cpp
| | M	src/shogun/clustering/GMM.cpp
| | M	src/shogun/clustering/Hierarchical.cpp
| | M	src/shogun/clustering/KMeans.cpp
| | M	src/shogun/distance/CustomDistance.cpp
| | M	src/shogun/distance/CustomDistance.h
| | M	src/shogun/distance/Distance.cpp
| | M	src/shogun/distance/SparseEuclidianDistance.cpp
| | M	src/shogun/distributions/Distribution.cpp
| | M	src/shogun/distributions/Gaussian.cpp
| | M	src/shogun/distributions/HMM.cpp
| | M	src/shogun/distributions/Histogram.cpp
| | M	src/shogun/distributions/LinearHMM.cpp
| | M	src/shogun/distributions/PositionalPWM.cpp
| | M	src/shogun/evaluation/CrossValidation.cpp
| | M	src/shogun/evaluation/PRCEvaluation.cpp
| | M	src/shogun/evaluation/ROCEvaluation.cpp
| | M	src/shogun/features/CombinedDotFeatures.cpp
| | M	src/shogun/features/CombinedDotFeatures.h
| | M	src/shogun/features/DotFeatures.cpp
| | M	src/shogun/features/ExplicitSpecFeatures.cpp
| | M	src/shogun/features/FKFeatures.cpp
| | M	src/shogun/features/Features.cpp
| | M	src/shogun/features/HashedWDFeatures.cpp
| | M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| | M	src/shogun/features/ImplicitWeightedSpecFeatures.cpp
| | M	src/shogun/features/PolyFeatures.cpp
| | M	src/shogun/features/RealFileFeatures.cpp
| | M	src/shogun/features/SNPFeatures.cpp
| | M	src/shogun/features/SimpleFeatures.h
| | M	src/shogun/features/SparseFeatures.h
| | M	src/shogun/features/SparsePolyFeatures.cpp
| | M	src/shogun/features/StreamingSparseFeatures.h
| | M	src/shogun/features/StringFeatures.h
| | M	src/shogun/features/StringFileFeatures.h
| | M	src/shogun/features/TOPFeatures.cpp
| | M	src/shogun/features/WDFeatures.cpp
| | M	src/shogun/io/AsciiFile.cpp
| | M	src/shogun/io/BinaryFile.cpp
| | M	src/shogun/io/File.cpp
| | M	src/shogun/io/HDF5File.cpp
| | M	src/shogun/io/ParseBuffer.h
| | M	src/shogun/io/SerializableHdf5File.cpp
| | M	src/shogun/io/SerializableHdf5Reader00.cpp
| | M	src/shogun/io/SimpleFile.h
| | M	src/shogun/io/StreamingAsciiFile.cpp
| | M	src/shogun/kernel/ANOVAKernel.cpp
| | M	src/shogun/kernel/AUCKernel.cpp
| | M	src/shogun/kernel/CombinedKernel.cpp
| | M	src/shogun/kernel/CommWordStringKernel.cpp
| | M	src/shogun/kernel/CustomKernel.h
| | M	src/shogun/kernel/DiceKernelNormalizer.h
| | M	src/shogun/kernel/DistantSegmentsKernel.cpp
| | M	src/shogun/kernel/GaussianKernel.cpp
| | M	src/shogun/kernel/HistogramWordStringKernel.cpp
| | M	src/shogun/kernel/Kernel.cpp
| | M	src/shogun/kernel/Kernel.h
| | M	src/shogun/kernel/LinearKernel.cpp
| | M	src/shogun/kernel/LinearStringKernel.cpp
| | M	src/shogun/kernel/LocalAlignmentStringKernel.cpp
| | M	src/shogun/kernel/LocalityImprovedStringKernel.cpp
| | M	src/shogun/kernel/OligoStringKernel.cpp
| | M	src/shogun/kernel/PyramidChi2.cpp
| | M	src/shogun/kernel/RegulatoryModulesStringKernel.cpp
| | M	src/shogun/kernel/SalzbergWordStringKernel.cpp
| | M	src/shogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| | M	src/shogun/kernel/SpectrumMismatchRBFKernel.cpp
| | M	src/shogun/kernel/SpectrumRBFKernel.cpp
| | M	src/shogun/kernel/SqrtDiagKernelNormalizer.h
| | M	src/shogun/kernel/TanimotoKernelNormalizer.h
| | M	src/shogun/kernel/WeightedCommWordStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreePositionStringKernel.h
| | M	src/shogun/kernel/WeightedDegreeRBFKernel.cpp
| | M	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreeStringKernel.h
| | M	src/shogun/kernel/ZeroMeanCenterKernelNormalizer.h
| | M	src/shogun/lib/BitString.h
| | M	src/shogun/lib/Cache.h
| | M	src/shogun/lib/Compressor.cpp
| | M	src/shogun/lib/DataType.h
| | M	src/shogun/lib/FibonacciHeap.cpp
| | M	src/shogun/lib/GCArray.h
| | M	src/shogun/lib/Trie.cpp
| | M	src/shogun/lib/Trie.h
| | M	src/shogun/lib/memory.h
| | M	src/shogun/machine/DistanceMachine.cpp
| | M	src/shogun/machine/KernelMachine.cpp
| | M	src/shogun/machine/KernelMachine.h
| | M	src/shogun/machine/LinearMachine.cpp
| | M	src/shogun/machine/LinearMachine.h
| | M	src/shogun/machine/OnlineLinearMachine.h
| | M	src/shogun/mathematics/Cplex.cpp
| | M	src/shogun/mathematics/Math.cpp
| | M	src/shogun/mathematics/Math.h
| | M	src/shogun/mathematics/arpack.cpp
| | M	src/shogun/mathematics/lapack.cpp
| | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | M	src/shogun/modelselection/ParameterCombination.cpp
| | M	src/shogun/preprocessor/ClassicMDS.cpp
| | M	src/shogun/preprocessor/DecompressString.h
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/KernelPCACut.cpp
| | M	src/shogun/preprocessor/LandmarkMDS.cpp
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/LogPlusOne.cpp
| | M	src/shogun/preprocessor/NormOne.cpp
| | M	src/shogun/preprocessor/PCA.cpp
| | M	src/shogun/preprocessor/PruneVarSubMean.cpp
| | M	src/shogun/preprocessor/RandomFourierGaussPreproc.cpp
| | M	src/shogun/preprocessor/SortUlongString.cpp
| | M	src/shogun/preprocessor/SortWordString.cpp
| | M	src/shogun/regression/svr/LibSVR.cpp
| | M	src/shogun/regression/svr/SVRLight.cpp
| | M	src/shogun/structure/DynProg.cpp
| | M	src/shogun/structure/IntronList.cpp
| | M	src/shogun/structure/Plif.cpp
| | M	src/shogun/structure/Plif.h
| | M	src/shogun/structure/PlifMatrix.cpp
| | M	src/shogun/ui/GUIClassifier.cpp
| | M	src/shogun/ui/GUIFeatures.cpp
| | M	src/shogun/ui/GUIHMM.cpp
| | M	src/shogun/ui/GUIKernel.cpp
| | M	src/shogun/ui/GUIStructure.h
| | M	src/shogun/ui/SGInterface.cpp
| |   
* | commit c362c79ce940ad626d95618ffae9e4ef28af97b0
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 26 22:56:10 2011 +0200
| | 
| |     translate new T[size] -> SG_MALLOCX(T, size)
| | 
| | M	examples/undocumented/libshogun/classifier_libsvm.cpp
| | M	examples/undocumented/libshogun/classifier_minimal_svm.cpp
| | M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| | M	examples/undocumented/libshogun/kernel_gaussian.cpp
| | M	examples/undocumented/libshogun/kernel_revlin.cpp
| | M	examples/undocumented/libshogun/library_dyn_int.cpp
| | M	examples/undocumented/libshogun/library_indirect_object.cpp
| | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| | M	examples/undocumented/libshogun/parameter_iterate_float64.cpp
| | M	examples/undocumented/libshogun/parameter_iterate_sgobject.cpp
| | M	examples/undocumented/libshogun/parameter_set_from_parameters.cpp
| | M	examples/undocumented/libshogun/preproc_randomfouriergauss.cpp
| | M	examples/undocumented/libshogun/streaming_from_simple.cpp
| | M	src/interfaces/cmdline_static/CmdLineInterface.cpp
| | M	src/interfaces/csharp_modular/swig_typemaps.i
| | M	src/interfaces/java_modular/swig_typemaps.i
| | M	src/interfaces/lua_modular/swig_typemaps.i
| | M	src/interfaces/matlab_static/MatlabInterface.cpp
| | M	src/interfaces/octave_modular/swig_typemaps.i
| | M	src/interfaces/octave_static/OctaveInterface.cpp
| | M	src/interfaces/python_modular/swig_typemaps.i
| | M	src/interfaces/python_static/PythonInterface.cpp
| | M	src/interfaces/r_modular/swig_typemaps.i
| | M	src/interfaces/r_static/RInterface.cpp
| | M	src/interfaces/ruby_modular/swig_typemaps.i
| | M	src/shogun/base/Parameter.cpp
| | M	src/shogun/classifier/AveragedPerceptron.cpp
| | M	src/shogun/classifier/GaussianNaiveBayes.cpp
| | M	src/shogun/classifier/KNN.cpp
| | M	src/shogun/classifier/LDA.cpp
| | M	src/shogun/classifier/LPBoost.cpp
| | M	src/shogun/classifier/LPM.cpp
| | M	src/shogun/classifier/Perceptron.cpp
| | M	src/shogun/classifier/PluginEstimate.cpp
| | M	src/shogun/classifier/SubGradientLPM.cpp
| | M	src/shogun/classifier/mkl/MKL.cpp
| | M	src/shogun/classifier/mkl/MKLMultiClass.cpp
| | M	src/shogun/classifier/mkl/MKLMultiClassGLPK.cpp
| | M	src/shogun/classifier/svm/CPLEXSVM.cpp
| | M	src/shogun/classifier/svm/DomainAdaptationSVM.cpp
| | M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | M	src/shogun/classifier/svm/GMNPLib.cpp
| | M	src/shogun/classifier/svm/GMNPSVM.cpp
| | M	src/shogun/classifier/svm/GNPPLib.cpp
| | M	src/shogun/classifier/svm/GNPPSVM.cpp
| | M	src/shogun/classifier/svm/GPBTSVM.cpp
| | M	src/shogun/classifier/svm/LaRank.cpp
| | M	src/shogun/classifier/svm/LibLinear.cpp
| | M	src/shogun/classifier/svm/LibSVM.cpp
| | M	src/shogun/classifier/svm/LibSVMMultiClass.cpp
| | M	src/shogun/classifier/svm/LibSVMOneClass.cpp
| | M	src/shogun/classifier/svm/MPDSVM.cpp
| | M	src/shogun/classifier/svm/MultiClassSVM.cpp
| | M	src/shogun/classifier/svm/QPBSVMLib.cpp
| | M	src/shogun/classifier/svm/SGDQN.cpp
| | M	src/shogun/classifier/svm/SVM.cpp
| | M	src/shogun/classifier/svm/SVMLight.cpp
| | M	src/shogun/classifier/svm/SVMLin.cpp
| | M	src/shogun/classifier/svm/SVMOcas.cpp
| | M	src/shogun/classifier/svm/SVMSGD.cpp
| | M	src/shogun/classifier/svm/SVM_libsvm.cpp
| | M	src/shogun/classifier/svm/SVM_linear.cpp
| | M	src/shogun/classifier/svm/ScatterSVM.cpp
| | M	src/shogun/classifier/svm/SubGradientSVM.cpp
| | M	src/shogun/classifier/svm/Tron.cpp
| | M	src/shogun/classifier/svm/WDSVMOcas.cpp
| | M	src/shogun/classifier/svm/pr_loqo.cpp
| | M	src/shogun/classifier/svm/ssl.cpp
| | M	src/shogun/clustering/GMM.cpp
| | M	src/shogun/clustering/Hierarchical.cpp
| | M	src/shogun/clustering/KMeans.cpp
| | M	src/shogun/distance/CustomDistance.cpp
| | M	src/shogun/distance/CustomDistance.h
| | M	src/shogun/distance/Distance.cpp
| | M	src/shogun/distance/SparseEuclidianDistance.cpp
| | M	src/shogun/distributions/Distribution.cpp
| | M	src/shogun/distributions/Gaussian.cpp
| | M	src/shogun/distributions/HMM.cpp
| | M	src/shogun/distributions/Histogram.cpp
| | M	src/shogun/distributions/LinearHMM.cpp
| | M	src/shogun/distributions/PositionalPWM.cpp
| | M	src/shogun/evaluation/CrossValidation.cpp
| | M	src/shogun/evaluation/PRCEvaluation.cpp
| | M	src/shogun/evaluation/ROCEvaluation.cpp
| | M	src/shogun/features/CombinedDotFeatures.cpp
| | M	src/shogun/features/CombinedDotFeatures.h
| | M	src/shogun/features/DotFeatures.cpp
| | M	src/shogun/features/ExplicitSpecFeatures.cpp
| | M	src/shogun/features/FKFeatures.cpp
| | M	src/shogun/features/Features.cpp
| | M	src/shogun/features/HashedWDFeatures.cpp
| | M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| | M	src/shogun/features/ImplicitWeightedSpecFeatures.cpp
| | M	src/shogun/features/PolyFeatures.cpp
| | M	src/shogun/features/RealFileFeatures.cpp
| | M	src/shogun/features/SNPFeatures.cpp
| | M	src/shogun/features/SimpleFeatures.h
| | M	src/shogun/features/SparseFeatures.h
| | M	src/shogun/features/SparsePolyFeatures.cpp
| | M	src/shogun/features/StreamingSparseFeatures.h
| | M	src/shogun/features/StringFeatures.h
| | M	src/shogun/features/StringFileFeatures.h
| | M	src/shogun/features/TOPFeatures.cpp
| | M	src/shogun/features/WDFeatures.cpp
| | M	src/shogun/io/AsciiFile.cpp
| | M	src/shogun/io/BinaryFile.cpp
| | M	src/shogun/io/File.cpp
| | M	src/shogun/io/HDF5File.cpp
| | M	src/shogun/io/ParseBuffer.h
| | M	src/shogun/io/SerializableHdf5File.cpp
| | M	src/shogun/io/SerializableHdf5Reader00.cpp
| | M	src/shogun/io/SimpleFile.h
| | M	src/shogun/io/StreamingAsciiFile.cpp
| | M	src/shogun/kernel/ANOVAKernel.cpp
| | M	src/shogun/kernel/AUCKernel.cpp
| | M	src/shogun/kernel/CombinedKernel.cpp
| | M	src/shogun/kernel/CommUlongStringKernel.cpp
| | M	src/shogun/kernel/CommWordStringKernel.cpp
| | M	src/shogun/kernel/CustomKernel.h
| | M	src/shogun/kernel/DiceKernelNormalizer.h
| | M	src/shogun/kernel/DistantSegmentsKernel.cpp
| | M	src/shogun/kernel/GaussianKernel.cpp
| | M	src/shogun/kernel/HistogramWordStringKernel.cpp
| | M	src/shogun/kernel/Kernel.cpp
| | M	src/shogun/kernel/Kernel.h
| | M	src/shogun/kernel/LinearKernel.cpp
| | M	src/shogun/kernel/LinearStringKernel.cpp
| | M	src/shogun/kernel/LocalAlignmentStringKernel.cpp
| | M	src/shogun/kernel/LocalityImprovedStringKernel.cpp
| | M	src/shogun/kernel/OligoStringKernel.cpp
| | M	src/shogun/kernel/PyramidChi2.cpp
| | M	src/shogun/kernel/RegulatoryModulesStringKernel.cpp
| | M	src/shogun/kernel/SalzbergWordStringKernel.cpp
| | M	src/shogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| | M	src/shogun/kernel/SpectrumMismatchRBFKernel.cpp
| | M	src/shogun/kernel/SpectrumRBFKernel.cpp
| | M	src/shogun/kernel/SqrtDiagKernelNormalizer.h
| | M	src/shogun/kernel/TanimotoKernelNormalizer.h
| | M	src/shogun/kernel/WeightedCommWordStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreePositionStringKernel.h
| | M	src/shogun/kernel/WeightedDegreeRBFKernel.cpp
| | M	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreeStringKernel.h
| | M	src/shogun/kernel/ZeroMeanCenterKernelNormalizer.h
| | M	src/shogun/lib/BitString.h
| | M	src/shogun/lib/Cache.h
| | M	src/shogun/lib/Compressor.cpp
| | M	src/shogun/lib/DataType.h
| | M	src/shogun/lib/FibonacciHeap.cpp
| | M	src/shogun/lib/GCArray.h
| | M	src/shogun/lib/Trie.cpp
| | M	src/shogun/lib/Trie.h
| | M	src/shogun/lib/memory.h
| | M	src/shogun/machine/DistanceMachine.cpp
| | M	src/shogun/machine/KernelMachine.cpp
| | M	src/shogun/machine/KernelMachine.h
| | M	src/shogun/machine/LinearMachine.cpp
| | M	src/shogun/machine/LinearMachine.h
| | M	src/shogun/machine/OnlineLinearMachine.h
| | M	src/shogun/mathematics/Cplex.cpp
| | M	src/shogun/mathematics/Math.cpp
| | M	src/shogun/mathematics/Math.h
| | M	src/shogun/mathematics/arpack.cpp
| | M	src/shogun/mathematics/lapack.cpp
| | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | M	src/shogun/modelselection/ParameterCombination.cpp
| | M	src/shogun/preprocessor/ClassicMDS.cpp
| | M	src/shogun/preprocessor/DecompressString.h
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/KernelPCACut.cpp
| | M	src/shogun/preprocessor/LandmarkMDS.cpp
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/LogPlusOne.cpp
| | M	src/shogun/preprocessor/NormOne.cpp
| | M	src/shogun/preprocessor/PCA.cpp
| | M	src/shogun/preprocessor/PruneVarSubMean.cpp
| | M	src/shogun/preprocessor/RandomFourierGaussPreproc.cpp
| | M	src/shogun/preprocessor/SortUlongString.cpp
| | M	src/shogun/preprocessor/SortWordString.cpp
| | M	src/shogun/regression/svr/LibSVR.cpp
| | M	src/shogun/regression/svr/SVRLight.cpp
| | M	src/shogun/structure/DynProg.cpp
| | M	src/shogun/structure/IntronList.cpp
| | M	src/shogun/structure/Plif.cpp
| | M	src/shogun/structure/Plif.h
| | M	src/shogun/structure/PlifMatrix.cpp
| | M	src/shogun/ui/GUIClassifier.cpp
| | M	src/shogun/ui/GUIFeatures.cpp
| | M	src/shogun/ui/GUIHMM.cpp
| | M	src/shogun/ui/GUIKernel.cpp
| | M	src/shogun/ui/GUIStructure.h
| | M	src/shogun/ui/SGInterface.cpp
| |   
* | commit 9da4005b912c6a3d3f316bde31905e53f8aee80b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 26 22:11:48 2011 +0200
| | 
| |     new[] -> SG_MALLOC: change a few difficult to automagically convert cases
| | 
| | M	src/shogun/classifier/LDA.cpp
| | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | M	src/shogun/lib/Trie.h
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| |   
* | commit dacdc4b99e49f15bfc1019e8ab7f339a6b034c1a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 26 22:05:32 2011 +0200
| | 
| |     start to replace new[] with SG_MALLOC
| | 
| | M	src/shogun/base/Parameter.cpp
| | M	src/shogun/evaluation/CrossValidation.cpp
| | M	src/shogun/preprocessor/ClassicMDS.cpp
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/PCA.cpp
| |   
* | commit 8c838b849a588c67714d4c4920383337137f0b79
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 26 20:34:52 2011 +0200
| | 
| |     don't make the weights const
| | 
| | M	src/shogun/lib/Trie.h
| |   
* | commit 74ee7d0bc1d23e86398db221cdb2e9791b02c36b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 26 20:19:19 2011 +0200
| | 
| |     replace delete[] with SG_FREE() also in examples
| | 
| | M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| | M	examples/undocumented/libshogun/features_copy_subset_simple_features.cpp
| | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| | M	examples/undocumented/libshogun/library_dyn_int.cpp
| | M	examples/undocumented/libshogun/parameter_iterate_sgobject.cpp
| | M	examples/undocumented/libshogun/preproc_randomfouriergauss.cpp
| | M	examples/undocumented/libshogun/streaming_from_simple.cpp
| |   
* | commit ecae80dc13ad9f8746d069c4299bfde226994933
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 26 20:17:17 2011 +0200
| | 
| |     replace delete[] with SG_FREE()
| | 
| | M	src/interfaces/cmdline_static/CmdLineInterface.cpp
| | M	src/interfaces/java_modular/swig_typemaps.i
| | M	src/interfaces/octave_static/OctaveInterface.cpp
| | M	src/interfaces/python_modular/swig_typemaps.i
| | M	src/interfaces/python_static/PythonInterface.cpp
| | M	src/interfaces/r_static/RInterface.cpp
| | M	src/interfaces/ruby_modular/swig_typemaps.i
| | M	src/shogun/base/DynArray.h
| | M	src/shogun/base/Parameter.cpp
| | M	src/shogun/classifier/AveragedPerceptron.cpp
| | M	src/shogun/classifier/GaussianNaiveBayes.cpp
| | M	src/shogun/classifier/KNN.cpp
| | M	src/shogun/classifier/LDA.cpp
| | M	src/shogun/classifier/LPBoost.cpp
| | M	src/shogun/classifier/LPM.cpp
| | M	src/shogun/classifier/Perceptron.cpp
| | M	src/shogun/classifier/PluginEstimate.cpp
| | M	src/shogun/classifier/SubGradientLPM.cpp
| | M	src/shogun/classifier/mkl/MKL.cpp
| | M	src/shogun/classifier/mkl/MKLMultiClass.cpp
| | M	src/shogun/classifier/mkl/MKLMultiClass.h
| | M	src/shogun/classifier/mkl/MKLMultiClassGLPK.cpp
| | M	src/shogun/classifier/svm/CPLEXSVM.cpp
| | M	src/shogun/classifier/svm/DomainAdaptationSVM.cpp
| | M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | M	src/shogun/classifier/svm/GMNPLib.cpp
| | M	src/shogun/classifier/svm/GMNPSVM.cpp
| | M	src/shogun/classifier/svm/GNPPLib.cpp
| | M	src/shogun/classifier/svm/GNPPSVM.cpp
| | M	src/shogun/classifier/svm/GPBTSVM.cpp
| | M	src/shogun/classifier/svm/LaRank.cpp
| | M	src/shogun/classifier/svm/LibLinear.cpp
| | M	src/shogun/classifier/svm/LibSVM.cpp
| | M	src/shogun/classifier/svm/LibSVMMultiClass.cpp
| | M	src/shogun/classifier/svm/LibSVMOneClass.cpp
| | M	src/shogun/classifier/svm/MPDSVM.cpp
| | M	src/shogun/classifier/svm/MultiClassSVM.cpp
| | M	src/shogun/classifier/svm/OnlineSVMSGD.cpp
| | M	src/shogun/classifier/svm/QPBSVMLib.cpp
| | M	src/shogun/classifier/svm/SGDQN.cpp
| | M	src/shogun/classifier/svm/SVM.cpp
| | M	src/shogun/classifier/svm/SVMLight.cpp
| | M	src/shogun/classifier/svm/SVMLin.cpp
| | M	src/shogun/classifier/svm/SVMOcas.cpp
| | M	src/shogun/classifier/svm/SVMSGD.cpp
| | M	src/shogun/classifier/svm/SVM_libsvm.cpp
| | M	src/shogun/classifier/svm/SVM_linear.cpp
| | M	src/shogun/classifier/svm/ScatterSVM.cpp
| | M	src/shogun/classifier/svm/SubGradientSVM.cpp
| | M	src/shogun/classifier/svm/Tron.cpp
| | M	src/shogun/classifier/svm/WDSVMOcas.cpp
| | M	src/shogun/classifier/svm/pr_loqo.cpp
| | M	src/shogun/classifier/svm/ssl.cpp
| | M	src/shogun/clustering/GMM.cpp
| | M	src/shogun/clustering/Hierarchical.cpp
| | M	src/shogun/clustering/KMeans.cpp
| | M	src/shogun/distance/CustomDistance.cpp
| | M	src/shogun/distance/Distance.cpp
| | M	src/shogun/distance/Distance.h
| | M	src/shogun/distance/SparseEuclidianDistance.cpp
| | M	src/shogun/distributions/Gaussian.cpp
| | M	src/shogun/distributions/HMM.cpp
| | M	src/shogun/distributions/Histogram.cpp
| | M	src/shogun/distributions/LinearHMM.cpp
| | M	src/shogun/distributions/PositionalPWM.cpp
| | M	src/shogun/evaluation/CrossValidation.cpp
| | M	src/shogun/evaluation/PRCEvaluation.cpp
| | M	src/shogun/evaluation/ROCEvaluation.cpp
| | M	src/shogun/features/CombinedDotFeatures.cpp
| | M	src/shogun/features/CombinedDotFeatures.h
| | M	src/shogun/features/DotFeatures.cpp
| | M	src/shogun/features/ExplicitSpecFeatures.cpp
| | M	src/shogun/features/FKFeatures.cpp
| | M	src/shogun/features/Features.cpp
| | M	src/shogun/features/HashedWDFeatures.cpp
| | M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| | M	src/shogun/features/ImplicitWeightedSpecFeatures.cpp
| | M	src/shogun/features/Labels.cpp
| | M	src/shogun/features/PolyFeatures.cpp
| | M	src/shogun/features/RealFileFeatures.cpp
| | M	src/shogun/features/SNPFeatures.cpp
| | M	src/shogun/features/SimpleFeatures.h
| | M	src/shogun/features/SparseFeatures.h
| | M	src/shogun/features/SparsePolyFeatures.cpp
| | M	src/shogun/features/StreamingSparseFeatures.h
| | M	src/shogun/features/StreamingStringFeatures.h
| | M	src/shogun/features/StringFeatures.h
| | M	src/shogun/features/StringFileFeatures.h
| | M	src/shogun/features/Subset.cpp
| | M	src/shogun/features/TOPFeatures.cpp
| | M	src/shogun/features/WDFeatures.cpp
| | M	src/shogun/io/AsciiFile.cpp
| | M	src/shogun/io/File.cpp
| | M	src/shogun/io/HDF5File.cpp
| | M	src/shogun/io/InputParser.h
| | M	src/shogun/io/ParseBuffer.h
| | M	src/shogun/io/SerializableHdf5File.cpp
| | M	src/shogun/io/SimpleFile.h
| | M	src/shogun/io/StreamingAsciiFile.cpp
| | M	src/shogun/kernel/ANOVAKernel.cpp
| | M	src/shogun/kernel/AUCKernel.cpp
| | M	src/shogun/kernel/CombinedKernel.cpp
| | M	src/shogun/kernel/CommWordStringKernel.cpp
| | M	src/shogun/kernel/CustomKernel.cpp
| | M	src/shogun/kernel/DiceKernelNormalizer.h
| | M	src/shogun/kernel/GaussianKernel.cpp
| | M	src/shogun/kernel/HistogramWordStringKernel.cpp
| | M	src/shogun/kernel/Kernel.cpp
| | M	src/shogun/kernel/Kernel.h
| | M	src/shogun/kernel/LinearKernel.cpp
| | M	src/shogun/kernel/LinearStringKernel.cpp
| | M	src/shogun/kernel/LocalAlignmentStringKernel.cpp
| | M	src/shogun/kernel/LocalityImprovedStringKernel.cpp
| | M	src/shogun/kernel/OligoStringKernel.cpp
| | M	src/shogun/kernel/PyramidChi2.cpp
| | M	src/shogun/kernel/RegulatoryModulesStringKernel.cpp
| | M	src/shogun/kernel/SalzbergWordStringKernel.cpp
| | M	src/shogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| | M	src/shogun/kernel/SpectrumMismatchRBFKernel.cpp
| | M	src/shogun/kernel/SpectrumRBFKernel.cpp
| | M	src/shogun/kernel/SqrtDiagKernelNormalizer.h
| | M	src/shogun/kernel/TanimotoKernelNormalizer.h
| | M	src/shogun/kernel/WeightedCommWordStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreePositionStringKernel.h
| | M	src/shogun/kernel/WeightedDegreeRBFKernel.cpp
| | M	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreeStringKernel.h
| | M	src/shogun/kernel/ZeroMeanCenterKernelNormalizer.h
| | M	src/shogun/lib/BitString.h
| | M	src/shogun/lib/Cache.h
| | M	src/shogun/lib/DataType.h
| | M	src/shogun/lib/DynamicArray.h
| | M	src/shogun/lib/DynamicObjectArray.h
| | M	src/shogun/lib/GCArray.h
| | M	src/shogun/lib/Trie.cpp
| | M	src/shogun/lib/Trie.h
| | M	src/shogun/machine/DistanceMachine.cpp
| | M	src/shogun/machine/KernelMachine.cpp
| | M	src/shogun/machine/KernelMachine.h
| | M	src/shogun/machine/LinearMachine.cpp
| | M	src/shogun/machine/LinearMachine.h
| | M	src/shogun/machine/OnlineLinearMachine.cpp
| | M	src/shogun/machine/OnlineLinearMachine.h
| | M	src/shogun/mathematics/Cplex.cpp
| | M	src/shogun/mathematics/Math.cpp
| | M	src/shogun/mathematics/Math.h
| | M	src/shogun/mathematics/arpack.cpp
| | M	src/shogun/mathematics/lapack.cpp
| | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | M	src/shogun/modelselection/ParameterCombination.cpp
| | M	src/shogun/preprocessor/ClassicMDS.cpp
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/KernelPCACut.cpp
| | M	src/shogun/preprocessor/LandmarkMDS.cpp
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/PCA.cpp
| | M	src/shogun/preprocessor/PruneVarSubMean.cpp
| | M	src/shogun/preprocessor/RandomFourierGaussPreproc.cpp
| | M	src/shogun/regression/KRR.cpp
| | M	src/shogun/regression/svr/LibSVR.cpp
| | M	src/shogun/regression/svr/SVRLight.cpp
| | M	src/shogun/structure/DynProg.cpp
| | M	src/shogun/structure/IntronList.cpp
| | M	src/shogun/structure/Plif.cpp
| | M	src/shogun/structure/Plif.h
| | M	src/shogun/structure/PlifMatrix.cpp
| | M	src/shogun/ui/GUIHMM.cpp
| | M	src/shogun/ui/GUIKernel.cpp
| | M	src/shogun/ui/GUIStructure.h
| | M	src/shogun/ui/SGInterface.cpp
| |   
* | commit cc045e9cfb9e08c439f5fad300c81a6623661c92
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 26 19:52:18 2011 +0200
| | 
| |     Introduce new SG_MALLOC/REALLOC/CALLOC macros calling sg_malloc etc but
| |     have the type information as first argument. Change all of shogun to use
| |     these new macros.
| | 
| | M	src/interfaces/octave_modular/swig_typemaps.i
| | M	src/interfaces/python_modular/swig_typemaps.i
| | M	src/shogun/base/DynArray.h
| | M	src/shogun/classifier/KNN.cpp
| | M	src/shogun/classifier/svm/LaRank.cpp
| | M	src/shogun/classifier/svm/LibLinear.cpp
| | M	src/shogun/classifier/svm/SVM_libsvm.cpp
| | M	src/shogun/classifier/svm/gpdt.cpp
| | M	src/shogun/classifier/svm/gpdtsolve.cpp
| | M	src/shogun/classifier/svm/gpm.cpp
| | M	src/shogun/classifier/svm/pr_loqo.cpp
| | M	src/shogun/features/Alphabet.h
| | M	src/shogun/features/SNPFeatures.cpp
| | M	src/shogun/features/SimpleFeatures.h
| | M	src/shogun/features/StreamingDotFeatures.h
| | M	src/shogun/features/StringFeatures.h
| | M	src/shogun/kernel/CombinedKernel.cpp
| | M	src/shogun/kernel/CommUlongStringKernel.cpp
| | M	src/shogun/kernel/LinearKernel.h
| | M	src/shogun/kernel/SNPStringKernel.cpp
| | M	src/shogun/kernel/SparseSpatialSampleStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | M	src/shogun/lib/Array.h
| | M	src/shogun/lib/Trie.h
| | M	src/shogun/lib/memory.cpp
| | M	src/shogun/lib/memory.h
| | M	src/shogun/machine/KernelMachine.h
| | M	src/shogun/preprocessor/KernelPCACut.cpp
| | M	src/shogun/structure/DynProg.cpp
| | M	src/shogun/structure/IntronList.cpp
| |     
* |   commit 0370104d67d2da5f5fd734d984459700354ac190
|\ \  Merge: e0df385 f8fba71
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue Jul 26 20:55:39 2011 +0400
| | | 
| | |     Merge branch 'master' of git://github.com/gsomix/shogun
| | |    
| * | commit f8fba71e0d82189adb15a49df3003013a6d54396
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Tue Jul 26 20:53:00 2011 +0400
| | | 
| | |     Fix fatal bug
| | | 
| | | M	src/shogun/lib/FibonacciHeap.cpp
| | |      
* | |   commit e0df3851f64846855e56dde8e2092f22e0ef6977
|\ \ \  Merge: 08e35cf 72b9f6c
| |/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | |   Date:   Tue Jul 26 20:12:29 2011 +0400
| | |   
| | |       Merge branch 'master' of git://github.com/gsomix/shogun
| | |    
| * | commit 72b9f6c797f73f1f83007de84c5f4b5a0e6cb118
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Tue Jul 26 20:08:58 2011 +0400
| | | 
| | |     Added get_key function for Fibonacci heap
| | | 
| | | M	src/shogun/lib/FibonacciHeap.cpp
| | | M	src/shogun/lib/FibonacciHeap.h
| | |    
* | | commit 08e35cf3e7d080c3469a412458013fae92d86274
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue Jul 26 18:50:00 2011 +0400
| | | 
| | |     Moved isomap_distance to .cpp
| | | 
| | | A	src/shogun/preprocessor/Isomap.cpp
| | | M	src/shogun/preprocessor/Isomap.h
| | |      
* | |   commit 6536a37bdeed738599eb1a3d1206878886f470aa
|\ \ \  Merge: 6ffbbae e79b597
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 26 06:24:07 2011 -0700
| | | | 
| | | |     Merge pull request #237 from sploving/master
| | | |     
| | | |     splite SGVector<char> from other types, since there is no char type in lua, we need use one-len string in lua to map a char in C
| | | |     
| * | | commit e79b5978ee002a6c210cb9312ad913503b47deee
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Tue Jul 26 21:08:16 2011 +0800
| | | | 
| | | |     splite SGVector<char> from other types, since there is no char type in lua, we need use one-len string in lua to map a char in C
| | | | 
| | | | M	src/interfaces/lua_modular/swig_typemaps.i
| | | |     
* | | | commit 6ffbbae774955b7de9e581b1718b8479823b9eb2
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 26 14:36:25 2011 +0200
| | | | 
| | | |     fix python out typemap for strings
| | | | 
| | | | M	src/interfaces/python_modular/swig_typemaps.i
| | | |     
* | | | commit 595aee74bcf5dd8bfec404d6a36b87b4269cbc03
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 26 13:43:02 2011 +0200
| | | | 
| | | |     Introduce destroy_vector/matrix. This function should be called only be
| | | |     the 'owner' of the vector/matrix object.
| | | | 
| | | | M	src/shogun/lib/DataType.h
| | | |     
* | | | commit 5ee1b7e12b32b6da3ddfc81c24197fb95ea77f75
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 26 13:42:30 2011 +0200
| | | | 
| | | |     fix ruby linkflags
| | | | 
| | | | M	src/configure
| | | |     
* | | | commit 19b3616126b6507227003aff3753a7c075d632e9
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Tue Jul 26 13:41:40 2011 +0200
| | |   
| | |       take care of dealloc of python objects in python typemaps and remove unused functions
| | |   
| | |   M	src/interfaces/python_modular/swig_typemaps.i
| | |    
* | | commit 2387fee9f7071e46aaf9c70e4171dfb870473c4f
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jul 26 12:33:24 2011 +0200
| | | 
| | |     fix compile failure w/o arpack
| | | 
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | |      
* | |   commit c9e1279f9fb46924a77d276ca155a1a20acbf912
|\ \ \  Merge: cb17d3a c4fc6c5
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 26 03:23:45 2011 -0700
| | | | 
| | | |     Merge pull request #236 from sploving/master
| | | |     
| | | |     support ruby narray library
| | | |     
| * | | commit c4fc6c56b4039b949f0a939559a46ebad65c0662
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Tue Jul 26 18:19:40 2011 +0800
| | | | 
| | | |     support ruby narray library
| | | | 
| | | | M	src/interfaces/ruby_modular/swig_typemaps.i
| | | |       
* | | |   commit cb17d3ad839c39d942986d5955d165151e77482d
|\ \ \ \  Merge: 93a63c7 0654cea
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Tue Jul 26 03:18:41 2011 -0700
| | | |   
| | | |       Merge pull request #235 from sploving/master
| | | |       
| | | |       support lua sgvector<char>
| | | |     
| * | | commit 0654cead46731267087bad0b73baf5f51e5d7ac5
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Tue Jul 26 18:10:34 2011 +0800
| | | | 
| | | |     support SGVector<char>
| | | | 
| | | | M	examples/undocumented/lua_modular/features_string_char_modular.lua
| | | | M	src/interfaces/lua_modular/shogun.lua
| | | | M	src/interfaces/lua_modular/swig_typemaps.i
| | | |     
* | | | commit 93a63c749ac5994478b04611d696a6cc73eb8076
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 26 11:28:04 2011 +0200
| | | | 
| | | |     add ruby narray detection in configure
| | | | 
| | | | M	src/configure
| | | |       
* | | |   commit 16fc2a1b93f5e2121524a6d468a6f972b2f2d8c2
|\ \ \ \  Merge: 05427ed f5b05f4
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | /   Date:   Tue Jul 26 02:27:45 2011 -0700
| |_|/    
|/| |         Merge pull request #234 from sploving/master
| | |         
| | |         add lua string features modular
| | |    
| * | commit f5b05f473c275c9cc78d2d102ee8101c80fac3cb
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Tue Jul 26 16:39:20 2011 +0800
| | | 
| | |     add string features lua example
| | | 
| | | A	examples/undocumented/lua_modular/features_string_char_modular.lua
| | |    
* | | commit 05427edcff160e1241f9b9b8ad6674e8fc7b31cc
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue Jul 26 00:39:48 2011 +0400
| | | 
| | |     Changed solver for LLE and removed unnecessary default parameter
| | | 
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | |    
* | | commit e11c4bcfcfab8163380b8c13933aaa3bc9d171a3
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue Jul 26 00:35:16 2011 +0400
| | | 
| | |     Improved HLLE
| | | 
| | | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | |    
* | | commit 1fff667d78a71a7ab8fd3c0ab9ca303ef8502359
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue Jul 26 00:33:05 2011 +0400
| | | 
| | |     Improved stability of Locally Linear Embedding
| | | 
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | |    
* | | commit ac722b7fafeb94352f855b66dbfe66aca0cdd509
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue Jul 26 00:32:00 2011 +0400
| | | 
| | |     Improved arpack wrapper
| | | 
| | | M	src/shogun/mathematics/arpack.cpp
| | |    
* | | commit 053c634fce544b1efb1b2141826dc5d4d7ba3ad7
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue Jul 26 00:30:26 2011 +0400
| | | 
| | |     Added some more filetypes to ignore by git
| | | 
| | | M	.gitignore
| | |    
* | | commit 9ff99546af4be84dfc1c079b4318f29e7b729735
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Jul 25 23:05:48 2011 +0400
| | | 
| | |     Added force_lapack option for Locally Linear Embedding and forced HLLE to use lapack solver
| | | 
| | | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | |    
* | | commit fe563a7c46e90eace5ec4177ab458883510986db
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 25 20:50:42 2011 +0200
| | | 
| | |     fix documentation for ALPHANUM and PROTEIN alphabets (they take upper
| | |     case chars not lowercase)
| | | 
| | | M	src/shogun/features/Alphabet.h
| | |    
* | | commit 179091b1af287374bc754b852f2a833321e8704e
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Jul 25 20:41:25 2011 +0400
| | | 
| | |     Fixed LLE and added HLLE python modular example
| | | 
| | | A	examples/undocumented/python_modular/preprocessor_hessianlocallylinearembedding_modular.py
| | | M	examples/undocumented/python_modular/preprocessor_locallylinearembedding_modular.py
| | |    
* | | commit 988360ca58dfa56181aedb7cb7781b7d64ee0a3d
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Jul 25 20:37:11 2011 +0400
| | | 
| | |     Introduced Hessian Locally Linear Embedding preprocessor
| | | 
| | | M	src/interfaces/modular/Preprocessor.i
| | | M	src/interfaces/modular/Preprocessor_includes.i
| | | A	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | | A	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| | | M	src/shogun/preprocessor/Preprocessor.h
| | |    
* | | commit bcb7bb8f5a965e5eb7e51f7c158a4015411f5cf5
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Jul 25 20:35:49 2011 +0400
| | | 
| | |     Added DORGQR routine wrapper for lapack
| | | 
| | | M	src/shogun/mathematics/lapack.cpp
| | | M	src/shogun/mathematics/lapack.h
| | |    
* | | commit 00d57d584f283a8ed9512f97e74b6a8413b7b662
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 25 17:45:12 2011 +0200
| | | 
| | |     fix clustering example
| | | 
| | | M	examples/undocumented/python_modular/clustering_gmm_modular.py
| | |      
* | |   commit b3b2501e0a626e1dbf1cde9f83153c2ca6f61249
|\ \ \  Merge: 58fd62c e9d4632
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jul 25 17:35:39 2011 +0200
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |       
| * | |   commit e9d463232d97ebb290e9db25ae31905469c22acf
| |\ \ \  Merge: f70a405 ad8130a
| | |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Mon Jul 25 02:47:16 2011 -0700
| | | |   
| | | |       Merge pull request #232 from sploving/master
| | | |       
| | | |       fix matrix typemap(columns first then rows)
| | | |     
| | * | commit ad8130a578f008d729f4f2525b83631b52ba4620
| |/ /  Author: Baozeng Ding <sploving1@gmail.com>
| | |   Date:   Mon Jul 25 17:21:30 2011 +0800
| | |   
| | |       fix matrix typemap(columns first then rows)
| | |   
| | |   M	src/interfaces/lua_modular/swig_typemaps.i
| | |    
* | | commit 58fd62cc8e2765e82b9e4fc5926603942355d47e
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 25 17:33:24 2011 +0200
| | | 
| | |     various bugfixes related to SGVector/SGMatrix transition
| | |     
| | |     - in out typemap of python_modular for vectors
| | |     - in simplefeatures set_feature_matrix
| | |     - KRR double free
| | |      ...
| | | 
| | | M	examples/undocumented/libshogun/classifier_libsvm.cpp
| | | M	examples/undocumented/libshogun/features_subset_labels.cpp
| | | M	src/interfaces/modular/SGBase.i
| | | M	src/interfaces/python_modular/swig_typemaps.i
| | | M	src/shogun/base/SGObject.cpp
| | | M	src/shogun/features/Labels.cpp
| | | M	src/shogun/features/Labels.h
| | | M	src/shogun/features/SimpleFeatures.h
| | | M	src/shogun/machine/LinearMachine.cpp
| | | M	src/shogun/regression/KRR.cpp
| | |    
* | | commit d2f13fb17d3f9998af1a175dfd4e2bea4544fb3d
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 25 17:28:48 2011 +0200
| | | 
| | |     add example to just serialize matrix
| | | 
| | | A	examples/undocumented/python_modular/serialization_matrix_modular.py
| | |    
* | | commit d85cb655161d037c2d0a0c2f0970f44de3a9e131
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 25 14:00:49 2011 +0200
| | | 
| | |     remove unused confidences from labels and add SGVector in methods
| | |     utilizing labels when possible
| | | 
| | | M	src/shogun/classifier/AveragedPerceptron.cpp
| | | M	src/shogun/classifier/GaussianNaiveBayes.cpp
| | | M	src/shogun/classifier/GaussianNaiveBayes.h
| | | M	src/shogun/classifier/KNN.cpp
| | | M	src/shogun/classifier/LDA.cpp
| | | M	src/shogun/classifier/Perceptron.cpp
| | | M	src/shogun/classifier/svm/GPBTSVM.cpp
| | | M	src/shogun/classifier/svm/OnlineLibLinear.cpp
| | | M	src/shogun/classifier/svm/SVMLight.cpp
| | | M	src/shogun/classifier/svm/SVMLin.cpp
| | | M	src/shogun/classifier/svm/WDSVMOcas.cpp
| | | M	src/shogun/classifier/svm/libqp_splx.cpp
| | | M	src/shogun/clustering/GMM.cpp
| | | M	src/shogun/distributions/HMM.cpp
| | | M	src/shogun/evaluation/PRCEvaluation.cpp
| | | M	src/shogun/evaluation/ROCEvaluation.cpp
| | | M	src/shogun/features/Labels.cpp
| | | M	src/shogun/features/Labels.h
| | | M	src/shogun/kernel/AUCKernel.cpp
| | | M	src/shogun/kernel/SparseSpatialSampleStringKernel.cpp
| | | M	src/shogun/machine/LinearMachine.cpp
| | | M	src/shogun/machine/OnlineLinearMachine.cpp
| | | M	src/shogun/regression/KRR.cpp
| | |    
* | | commit 1083498b7d9c95c7c9adbca1d5156cc03ef5573b
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Mon Jul 25 10:33:24 2011 +0200
| |   
| |       start transition of label to use SGVector
| |   
| |   M	examples/undocumented/python_modular/classifier_averaged_perceptron_modular.py
| |   M	src/shogun/classifier/mkl/MKLMultiClass.cpp
| |   M	src/shogun/classifier/svm/SVMOcas.cpp
| |   M	src/shogun/classifier/svm/SVMOcas.h
| |   M	src/shogun/features/Labels.cpp
| |   M	src/shogun/features/Labels.h
| |   
* | commit f70a4056edbfef3e3070a99a787331c591b7d321
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Jul 25 01:42:28 2011 +0400
| | 
| |     Fixed load matrix for java modular
| | 
| | M	examples/undocumented/java_modular/Load.java
| |   
* | commit 480b7177dab18f8844fdd44a2c28c8023aa49549
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Jul 25 01:30:42 2011 +0400
| | 
| |     Fixed load.py
| | 
| | M	examples/undocumented/python_modular/tools/load.py
| |     
* |   commit 020d90962a1ff71ab4a67e7b689f4c50dbae1fce
|\ \  Merge: d8c70f9 a844225
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Jul 24 23:09:05 2011 +0200
| | | 
| | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | |    
| * | commit a8442259d8ac93013e54eb86148d94b76fa159fa
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Jul 25 00:19:54 2011 +0400
| | | 
| | |     Removed unnecessary println at landmark isomap java example
| | | 
| | | M	examples/undocumented/java_modular/preprocessor_landmarkisomap_modular.java
| | |    
| * | commit c1bbc5df97c100500f386a85c40b4e5976bec7f3
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Jul 25 00:18:45 2011 +0400
| | | 
| | |     Split isomap java example
| | | 
| | | M	examples/undocumented/java_modular/preprocessor_classicisomap_modular.java
| | | D	examples/undocumented/java_modular/preprocessor_isomap_modular.java
| | | M	examples/undocumented/java_modular/preprocessor_landmarkisomap_modular.java
| | |    
| * | commit 32df164cd0a76b87248fef5e9cca2bcdcd15d4a0
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Jul 25 00:15:21 2011 +0400
| | | 
| | |     Replaced simple features java test with one
| | | 
| | | D	examples/undocumented/java_modular/features_simple_byte_modular.java
| | | D	examples/undocumented/java_modular/features_simple_longint_modular.java
| | | M	examples/undocumented/java_modular/features_simple_modular.java
| | | D	examples/undocumented/java_modular/features_simple_real_modular.java
| | |      
| * |   commit 4a479cce25911d1de3477babd7c9d288e7e0b6c9
| |\ \  Merge: 8d1fa89 a75874e
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Mon Jul 25 00:11:59 2011 +0400
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |       
| * | |   commit 8d1fa89dc2980b3d42939655800d159f886410ea
| |\ \ \  Merge: 36d16cf 96ba02b
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Jul 24 17:08:50 2011 +0400
| | | | | 
| | | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | | |        
| * | | |   commit 36d16cf37317b5b2a7761f6c8fbc621a236a22a9
| |\ \ \ \  Merge: cdc1dc6 bb39c2f
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Sun Jul 24 15:19:26 2011 +0400
| | | | | | 
| | | | | |     Merge branch 'master' of git://github.com/gsomix/shogun
| | | | | |       
* | | | | | commit d8c70f99ee09ace4bca8c8d192997e60ada519d6
| |_|_|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | |   Date:   Sun Jul 24 23:08:09 2011 +0200
| | | | |   
| | | | |       fix loading of matrices (we now have one example per line - no longer
| | | | |       		one per column)
| | | | |   
| | | | |   M	examples/undocumented/python_modular/tools/load.py
| | | | |        
* | | | |   commit a75874e61e7719575310acc46bb68df5134a26e3
|\ \ \ \ \  Merge: 96ba02b 74f3665
| |_|_|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | |   Date:   Sun Jul 24 11:35:37 2011 -0700
| | | | |   
| | | | |       Merge pull request #231 from alesis/gmm
| | | | |       
| | | | |       Important EM bug fix and nice examples
| | | | |      
| * | | | commit 74f3665bb02bf1ad2240471acd3d76994023746b
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Sun Jul 24 18:13:40 2011 +0100
| | | | | 
| | | | |     A more illustrative example of SMEMs effect.
| | | | | 
| | | | | M	examples/undocumented/python_modular/graphical/smem_2d_gmm.py
| | | | |      
| * | | | commit 220e8bf4829ddc1203abd613281d01d4ea9c7a7a
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Sun Jul 24 18:02:29 2011 +0100
| | | | | 
| | | | |     Bug fixes for Gaussian and example
| | | | | 
| | | | | M	examples/undocumented/python_modular/graphical/smem_2d_gmm.py
| | | | | M	src/shogun/distributions/Gaussian.h
| | | | |      
| * | | | commit 81c0c6de0de7fbf69ef6e16ce6aba4a62a094bb3
|/ / / /  Author: Alesis Novik <alesisnov@gmail.com>
| | | |   Date:   Sun Jul 24 09:19:59 2011 +0100
| | | |   
| | | |       Small example changes
| | | |   
| | | |   M	examples/undocumented/python_modular/graphical/em_1d_gmm.py
| | | |       
* | | |   commit 96ba02b9a7073d8a4b8acd943b447a1bd37c9ca9
|\ \ \ \  Merge: cdc1dc6 1ba5573
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | /   Date:   Sun Jul 24 06:06:04 2011 -0700
| | |/    
| |/|         Merge pull request #230 from gsomix/master
| | |         
| | |         Implemented Fibonacci heap.
| | |    
| * | commit 1ba5573b2f2c3d06af937d0da92a3804156c423d
| |/  Author: Evgeniy Andreev <gsomix@gmail.com>
| |   Date:   Sun Jul 24 15:30:51 2011 +0400
| |   
| |       Some fixes.
| |   
| |   M	src/shogun/lib/FibonacciHeap.cpp
| |   M	src/shogun/lib/FibonacciHeap.h
| |   
| * commit bb39c2f33cd6e1d8301fd98e097581236a12de07
| | Author: Evgeniy Andreev <gsomix@gmail.com>
| | Date:   Sun Jul 24 15:13:08 2011 +0400
| | 
| |     Some fixes.
| | 
| | M	src/shogun/lib/FibonacciHeap.cpp
| | M	src/shogun/lib/FibonacciHeap.h
| |   
| * commit 194468a2e9867b9aa5645edaabe70c951f2e6da0
| | Author: Evgeniy Andreev <gsomix@gmail.com>
| | Date:   Sun Jul 24 15:02:34 2011 +0400
| | 
| |     Rewritten and added CFibonacciHeap class.
| | 
| | M	src/shogun/lib/FibonacciHeap.cpp
| | M	src/shogun/lib/FibonacciHeap.h
| |   
| * commit dcea2d6401fa91d51ad71e445920e806a6f4a09a
| | Author: Evgeniy Andreev <gsomix@gmail.com>
| | Date:   Tue Jul 19 10:42:34 2011 +0400
| | 
| |     Renamed some files.
| | 
| | D	src/libshogun/lib/FibonacciHeap.cpp
| | D	src/libshogun/lib/FibonacciHeap.h
| | A	src/shogun/lib/FibonacciHeap.cpp
| | A	src/shogun/lib/FibonacciHeap.h
| |     
| *   commit b00c496e964aeaff32353fb11109a03790c66d2d
| |\  Merge: 1dbb5bf d67fba1
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Mon Jul 18 23:51:14 2011 +0400
| | | 
| | |     Merge branch 'master' of git://github.com/shogun-toolbox/shogun
| | |    
| * | commit 1dbb5bfe1d4eb095d1d048a92016b8c1af1c1a38
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Thu Jul 14 23:10:11 2011 +0400
| | | 
| | |     Implemented Fibonacci heap
| | | 
| | | A	src/libshogun/lib/FibonacciHeap.cpp
| | | A	src/libshogun/lib/FibonacciHeap.h
| | |    
* | | commit cdc1dc6ae1467816896f449cb98d871feede8f2f
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Jul 24 11:57:50 2011 +0200
| | | 
| | |     mention modular interfaces at the top and static ones below
| | | 
| | | M	README
| | |      
* | |   commit a6e9a4a0b386ac2d9abef5bcbda74d1f943cfdd7
|\ \ \  Merge: 1db16d9 fc4baa4
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sun Jul 24 02:46:03 2011 -0700
| | | | 
| | | |     Merge pull request #229 from alesis/gmm
| | | |     
| | | |     SMEM for GMM
| | | |     
| * | | commit fc4baa4e08676a1501b5a244cb3c16dd7392d9a1
| | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | Date:   Sun Jul 24 09:08:11 2011 +0100
| | | | 
| | | |     Added SMEM GMM examples
| | | | 
| | | | A	examples/undocumented/python_modular/graphical/smem_1d_gmm.py
| | | | A	examples/undocumented/python_modular/graphical/smem_2d_gmm.py
| | | |     
| * | | commit 104f0f0ee5e23d95562fa7bd21b69b0da230fd91
| | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | Date:   Sun Jul 24 08:11:59 2011 +0100
| | | | 
| | | |     Some memory leaks and general fixes. Mostly works now.
| | | | 
| | | | M	src/shogun/clustering/GMM.cpp
| | | |     
| * | | commit 8af741f5fb1f39d97ddbbd4fce3810a2c953f07f
|/ / /  Author: Alesis Novik <alesisnov@gmail.com>
| | |   Date:   Sun Jul 24 01:19:59 2011 +0100
| | |   
| | |       Initial SMEM implementation. With bugs, fix will follow.
| | |   
| | |   M	src/shogun/clustering/GMM.cpp
| | |   M	src/shogun/clustering/GMM.h
| | |   M	src/shogun/distributions/Gaussian.h
| | |    
* | | commit 1db16d9cbf7fe0da5c2645f8ab175840c357f97c
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jul 24 01:45:07 2011 +0400
| | | 
| | |     Added DGEQR wrapper for QR factorization
| | | 
| | | M	src/shogun/mathematics/lapack.cpp
| | | M	src/shogun/mathematics/lapack.h
| | |      
* | |   commit 9d9ea5c4ef651932817e4f72f3a5de838c469dea
|\ \ \  Merge: 31d21d3 77d27f6
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Jul 22 10:56:48 2011 -0700
| | | | 
| | | |     Merge pull request #228 from karlnapf/master
| | | |     
| | | |     first working grid search with a kernel
| | | |     
| * | | commit 77d27f642bbf6dcd5c3247ebf04b2e590a0a9a2b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 22 19:52:43 2011 +0200
| | | | 
| | | |     extended model selection to select kernel with SGObject parameters
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | | |     
| * | | commit f7a8c7da2d4b93dffbd84a22ee295820b31176fe
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 22 19:41:42 2011 +0200
| | | | 
| | | |     cleaned up includes
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | | |       
| * | |   commit b0ac9e5257badad9a09a41558467c3e7c07ae934
| |\ \ \  Merge: 31d21d3 0092dd8
|/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Fri Jul 22 19:37:50 2011 +0200
| | | |   
| | | |       Merge branch 'kernelmachine'
| | | |     
| * | | commit 0092dd8e1d36822c005834ed70ce9e0cdee3d4e9
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 22 19:37:14 2011 +0200
| | | | 
| | | |     -renaming
| | | |     -added confidence interval computation
| | | | 
| | | | M	src/shogun/evaluation/CrossValidation.cpp
| | | | M	src/shogun/evaluation/CrossValidation.h
| | | | M	src/shogun/modelselection/GridSearchModelSelection.cpp
| | | |     
| * | | commit 094c0160219591ab874c87860a47c0f50a445524
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 22 19:36:23 2011 +0200
| | | | 
| | | |     added grid search example with a kernel
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | A	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | | |     
| * | | commit b792f0f7972e975e7c575d97bcccbed6f62c0882
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 22 19:36:02 2011 +0200
| | | | 
| | | |     renamed grid_search_simple
| | | | 
| | | | A	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| | | | D	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| | | |       
* | | |   commit 31d21d3b65ca24884fa8bbb2c7e343774cdb130c
|\ \ \ \  Merge: 0f1f5d9 80b7302
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Fri Jul 22 09:13:41 2011 -0700
| | | |   
| | | |       Merge pull request #227 from karlnapf/master
| | | |       
| | | |       simplified parameter trees for model selection
| | | |     
| * | | commit 80b730257932bb5e116ec8c67114dc0bd8ba0ee7
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 22 18:08:29 2011 +0200
| | | | 
| | | |     applied name node removal of model selection parameters
| | | | 
| | | | M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| | | |     
| * | | commit d05c40c773f1a9cee48475b4624267fb5d94ef8b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 22 18:01:45 2011 +0200
| | | | 
| | | |     removed "name nodes" which were a placeholder to group SGObject nodes. This is just not necessary
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | | M	examples/undocumented/libshogun/modelselection_model_selection_parameters_test.cpp
| | | | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | | M	src/shogun/modelselection/ParameterCombination.cpp
| | | | M	src/shogun/modelselection/ParameterCombination.h
| | | |     
| * | | commit c94ebcc313eb30725c1c9be2c2ab71a0a31cb903
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 22 18:00:23 2011 +0200
| | | | 
| | | |     usage of CStatisitcs::mean instead of CMath
| | | | 
| | | | M	src/shogun/evaluation/CrossValidation.cpp
| | | |     
| * | | commit 20f697448860a53f4fc1063f0abcdd119d03326b
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Fri Jul 22 16:25:30 2011 +0200
| | |   
| | |       usage of mean method of CStatistics instead of CMath
| | |   
| | |   M	src/shogun/evaluation/CrossValidation.cpp
| | |    
* | | commit 0f1f5d9ed7352a33426c5c8285670ecf36fb1b39
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jul 22 16:34:45 2011 +0200
| | | 
| | |     enable major/minor string finding over 2 snp feature objects
| | | 
| | | M	src/shogun/features/SNPFeatures.cpp
| | | M	src/shogun/features/SNPFeatures.h
| | |      
* | |   commit 35719a854d3721aaaa87e5d443117e29ffbe375e
|\ \ \  Merge: abdbf53 c3629a8
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Jul 22 07:31:38 2011 -0700
| | | | 
| | | |     Merge pull request #226 from karlnapf/master
| | | |     
| | | |     correction
| | | |     
| * | | commit c3629a8bd39ce17e8015aaea1ef89000d43b500d
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 22 16:18:24 2011 +0200
| | | | 
| | | |     removed a check that did not make sense
| | | | 
| | | | M	src/shogun/machine/KernelMachine.cpp
| | | |       
* | | |   commit abdbf5369b6b1796f669b7fa24bc5c0d569982cd
|\ \ \ \  Merge: f8239e9 68f6f71
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Fri Jul 22 03:38:09 2011 -0700
| | | |   
| | | |       Merge pull request #225 from karlnapf/master
| | | |       
| | | |       implementation of copy_subset
| | | |     
| * | | commit 68f6f71f7c62f425b875526a316ccb032e1db493
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 22 12:33:37 2011 +0200
| | | | 
| | | |     added example/test for copy_subset method of SimpleFeatures
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | A	examples/undocumented/libshogun/features_copy_subset_simple_features.cpp
| | | |     
| * | | commit 295d6f0ace7c41881e6dd6ac89d4432579ceed81
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Fri Jul 22 12:29:48 2011 +0200
| | |   
| | |       implemented copy_subset method
| | |   
| | |   M	src/shogun/features/SimpleFeatures.h
| | |      
* | |   commit f8239e91fd171086786a114fae9b61c578c4ee20
|\ \ \  Merge: 6d0ae13 3bb09d5
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Jul 22 03:25:35 2011 -0700
| | | | 
| | | |     Merge pull request #224 from karlnapf/master
| | | |     
| | | |     made get_num_vectors method const
| | | |     
| * | | commit 3bb09d5aee7ac6f12f0b393e70f8bdf3d9ee9b66
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 22 10:54:05 2011 +0200
| | | | 
| | | |     made get_num_vectors() a const method
| | | | 
| | | | M	src/shogun/features/CombinedDotFeatures.h
| | | | M	src/shogun/features/CombinedFeatures.h
| | | | M	src/shogun/features/DummyFeatures.h
| | | | M	src/shogun/features/ExplicitSpecFeatures.h
| | | | M	src/shogun/features/Features.h
| | | | M	src/shogun/features/HashedWDFeatures.h
| | | | M	src/shogun/features/HashedWDFeaturesTransposed.h
| | | | M	src/shogun/features/ImplicitWeightedSpecFeatures.h
| | | | M	src/shogun/features/LBPPyrDotFeatures.h
| | | | M	src/shogun/features/PolyFeatures.h
| | | | M	src/shogun/features/SNPFeatures.h
| | | | M	src/shogun/features/SimpleFeatures.h
| | | | M	src/shogun/features/SparseFeatures.h
| | | | M	src/shogun/features/SparsePolyFeatures.h
| | | | M	src/shogun/features/StreamingSimpleFeatures.h
| | | | M	src/shogun/features/StreamingSparseFeatures.h
| | | | M	src/shogun/features/StreamingStringFeatures.h
| | | | M	src/shogun/features/StringFeatures.h
| | | | M	src/shogun/features/WDFeatures.h
| | | |       
* | | |   commit 6d0ae13a0b07debbcf09db4b2fd7c072874fd23e
|\ \ \ \  Merge: c86e131 fe2408f
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Fri Jul 22 01:27:41 2011 -0700
| | | |   
| | | |       Merge pull request #223 from sploving/master
| | | |       
| | | |       add lua docs and further examples
| | | |     
| * | | commit fe2408fa7b2f9aad282381981bdd5019341c49fa
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 22 16:21:35 2011 +0800
| | | | 
| | | |     add lua doc in ModularTutorial.mainpage
| | | | 
| | | | M	doc/pages/ModularTutorial.mainpage
| | | |     
| * | | commit 49f6d5e82a6dfe0d2d75964d4f37381184423ccf
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 22 16:15:50 2011 +0800
| | | | 
| | | |     add minimal libsvm lua modular
| | | | 
| | | | A	examples/undocumented/lua_modular/classifier_libsvm_minimal_modular.lua
| | | | M	src/interfaces/lua_modular/shogun.lua
| | | |     
| * | | commit e385d7177cb165e59d5f33c8c3af110c2982ebb8
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 22 15:16:08 2011 +0800
| | | | 
| | | |     add lua doc in Installion.mainpage
| | | | 
| | | | M	doc/pages/Installation.mainpage
| | | |     
| * | | commit 669e97cc7e70fff90616863b22578358b2a4a65b
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 22 13:55:13 2011 +0800
| | | | 
| | | |     add debug.getinfo(3), which is simliar to __main__ function in python
| | | | 
| | | | M	examples/undocumented/lua_modular/classifier_averaged_perceptron_modular.lua
| | | | M	examples/undocumented/lua_modular/distance_braycurtis_modular.lua
| | | | M	examples/undocumented/lua_modular/evaluation_contingencytableevaluation_modular.lua
| | | | M	examples/undocumented/lua_modular/features_simple_real_modular.lua
| | | | M	examples/undocumented/lua_modular/kernel_gaussian_modular.lua
| | | | M	examples/undocumented/lua_modular/kernel_weighted_degree_string_modular.lua
| | | | M	examples/undocumented/lua_modular/preprocessor_classicisomap_modular.lua
| | | | M	examples/undocumented/lua_modular/serialization_complex_example.lua
| | | |     
| * | | commit 33d2b2354cdd3cb45a44b6f58b2854ffc9a6c2f1
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 22 13:24:44 2011 +0800
| | | | 
| | | |     add kernel_comm_word_string_modular.lua example
| | | | 
| | | | A	examples/undocumented/lua_modular/kernel_comm_word_string_modular.lua
| | | | M	src/interfaces/lua_modular/shogun.lua
| | | |     
| * | | commit 7875d7b28665760a3421cb0e992f88ea14c459a3
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 22 13:17:09 2011 +0800
| | | | 
| | | |     add kerenel_comm_ulong_string_modular.lua example
| | | | 
| | | | A	examples/undocumented/lua_modular/kernel_comm_ulong_string_modular.lua
| | | | M	src/interfaces/lua_modular/shogun.lua
| | | |     
| * | | commit 6ee1f50f27794826a0ac772bb51eb806270f05ee
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 22 13:06:14 2011 +0800
| | | | 
| | | |     add kernel_linear_word_modular.lua example
| | | | 
| | | | A	examples/undocumented/lua_modular/kernel_linear_word_modular.lua
| | | | M	src/interfaces/lua_modular/shogun.lua
| | | |     
| * | | commit 93c62a63abaded3278c2de8d0fbf5466cd5cc6e1
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 22 12:59:45 2011 +0800
| | | | 
| | | |     add kernel_linear_byte_modular.lua example
| | | | 
| | | | A	examples/undocumented/lua_modular/kernel_linear_byte_modular.lua
| | | | M	src/interfaces/lua_modular/shogun.lua
| | | |       
* | | |   commit c86e131225489bddbe45932604fd40c3177a9157
|\ \ \ \  Merge: fd2da15 8bb327a
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Thu Jul 21 23:40:38 2011 -0700
| | | |   
| | | |       Merge pull request #222 from sploving/8bb327a2f81c5e85ea97070aa548739bbb96291d
| | | |       
| | | |       add string support in typemap and example
| | | |     
| * | | commit 8bb327a2f81c5e85ea97070aa548739bbb96291d
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 22 11:22:01 2011 +0800
| | | | 
| | | |     add kernel_weighted_degree_string_modular.lua example
| | | | 
| | | | A	examples/undocumented/lua_modular/kernel_weighted_degree_string_modular.lua
| | | | M	src/interfaces/lua_modular/shogun.lua
| | | |     
| * | | commit 334cc39b56b30d5f79415c48ef9bf3a3587346da
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 22 11:20:45 2011 +0800
| | | | 
| | | |     add stringfeatures check typemap
| | | | 
| | | | M	src/interfaces/lua_modular/swig_typemaps.i
| | | |     
* | | | commit fd2da157e85cc3b6534f2eaa1af2963915834015
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jul 21 22:34:21 2011 +0200
| | | | 
| | | |     Modify examples to only load modshogun.
| | | | 
| | | | M	examples/undocumented/java_modular/Load.java
| | | | M	examples/undocumented/java_modular/MatrixTest.java
| | | | M	examples/undocumented/java_modular/VectorTest.java
| | | | M	examples/undocumented/java_modular/classifier_averaged_perceptron_modular.java
| | | | M	examples/undocumented/java_modular/classifier_domainadaptationsvm_modular.java
| | | | M	examples/undocumented/java_modular/classifier_gaussiannaivebayes_modular.java
| | | | M	examples/undocumented/java_modular/classifier_gmnpsvm_modular.java
| | | | M	examples/undocumented/java_modular/classifier_gpbtsvm_modular.java
| | | | M	examples/undocumented/java_modular/classifier_knn_modular.java
| | | | M	examples/undocumented/java_modular/classifier_larank_modular.java
| | | | M	examples/undocumented/java_modular/classifier_lda_modular.java
| | | | M	examples/undocumented/java_modular/classifier_liblinear_modular.java
| | | | M	examples/undocumented/java_modular/classifier_libsvm_minimal_modular.java
| | | | M	examples/undocumented/java_modular/classifier_libsvm_modular.java
| | | | M	examples/undocumented/java_modular/classifier_libsvmmulticlass_modular.java
| | | | M	examples/undocumented/java_modular/classifier_libsvmoneclass_modular.java
| | | | M	examples/undocumented/java_modular/classifier_mpdsvm_modular.java
| | | | M	examples/undocumented/java_modular/classifier_perceptron_modular.java
| | | | M	examples/undocumented/java_modular/classifier_svmlight_linear_term_modular.java
| | | | M	examples/undocumented/java_modular/classifier_svmlight_modular.java
| | | | M	examples/undocumented/java_modular/clustering_hierarchical_modular.java
| | | | M	examples/undocumented/java_modular/clustering_kmeans_modular.java
| | | | M	examples/undocumented/java_modular/distance_braycurtis_modular.java
| | | | M	examples/undocumented/java_modular/distance_canberra_modular.java
| | | | M	examples/undocumented/java_modular/distance_canberraword_modular.java
| | | | M	examples/undocumented/java_modular/distance_chebyshew_modular.java
| | | | M	examples/undocumented/java_modular/distance_chisquare_modular.java
| | | | M	examples/undocumented/java_modular/distance_cosine_modular.java
| | | | M	examples/undocumented/java_modular/distance_euclidian_modular.java
| | | | M	examples/undocumented/java_modular/distance_geodesic_modular.java
| | | | M	examples/undocumented/java_modular/distance_hammingword_modular.java
| | | | M	examples/undocumented/java_modular/distance_jensen_modular.java
| | | | M	examples/undocumented/java_modular/distance_manhatten_modular.java
| | | | M	examples/undocumented/java_modular/distance_manhattenword_modular.java
| | | | M	examples/undocumented/java_modular/distance_minkowski_modular.java
| | | | M	examples/undocumented/java_modular/distance_normsquared_modular.java
| | | | M	examples/undocumented/java_modular/distance_tanimoto_modular.java
| | | | M	examples/undocumented/java_modular/distribution_histogram_modular.java
| | | | M	examples/undocumented/java_modular/distribution_hmm_modular.java
| | | | M	examples/undocumented/java_modular/distribution_linearhmm_modular.java
| | | | M	examples/undocumented/java_modular/distribution_ppwm_modular.java
| | | | M	examples/undocumented/java_modular/evaluation_contingencytableevaluation_modular.java
| | | | M	examples/undocumented/java_modular/evaluation_meansquarederror_modular.java
| | | | M	examples/undocumented/java_modular/evaluation_multiclassaccuracy_modular.java
| | | | M	examples/undocumented/java_modular/evaluation_prcevaluation_modular.java
| | | | M	examples/undocumented/java_modular/evaluation_rocevaluation_modular.java
| | | | M	examples/undocumented/java_modular/features_simple_byte_modular.java
| | | | M	examples/undocumented/java_modular/features_simple_longint_modular.java
| | | | M	examples/undocumented/java_modular/features_simple_modular.java
| | | | M	examples/undocumented/java_modular/features_simple_real_modular.java
| | | | M	examples/undocumented/java_modular/features_snp_modular.java
| | | | M	examples/undocumented/java_modular/features_string_char_compressed_modular.java
| | | | M	examples/undocumented/java_modular/features_string_char_modular.java
| | | | M	examples/undocumented/java_modular/features_string_file_char_modular.java
| | | | M	examples/undocumented/java_modular/features_string_file_modular.java
| | | | M	examples/undocumented/java_modular/features_string_hashed_wd_modular.java
| | | | M	examples/undocumented/java_modular/features_string_sliding_window_modular.java
| | | | M	examples/undocumented/java_modular/features_string_ulong_modular.java
| | | | M	examples/undocumented/java_modular/features_string_word_modular.java
| | | | M	examples/undocumented/java_modular/kernel_anova_modular.java
| | | | M	examples/undocumented/java_modular/kernel_auc_modular.java
| | | | M	examples/undocumented/java_modular/kernel_cauchy_modular.java
| | | | M	examples/undocumented/java_modular/kernel_chi2_modular.java
| | | | M	examples/undocumented/java_modular/kernel_circular_modular.java
| | | | M	examples/undocumented/java_modular/kernel_combined_custom_poly_modular.java
| | | | M	examples/undocumented/java_modular/kernel_combined_modular.java
| | | | M	examples/undocumented/java_modular/kernel_comm_ulong_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_comm_word_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_const_modular.java
| | | | M	examples/undocumented/java_modular/kernel_custom_modular.java
| | | | M	examples/undocumented/java_modular/kernel_diag_modular.java
| | | | M	examples/undocumented/java_modular/kernel_distance_modular.java
| | | | M	examples/undocumented/java_modular/kernel_distantsegments_modular.java
| | | | M	examples/undocumented/java_modular/kernel_exponential_modular.java
| | | | M	examples/undocumented/java_modular/kernel_fisher_modular.java
| | | | M	examples/undocumented/java_modular/kernel_fixed_degree_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_gaussian_modular.java
| | | | M	examples/undocumented/java_modular/kernel_gaussian_shift_modular.java
| | | | M	examples/undocumented/java_modular/kernel_histogram_word_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_inversemultiquadric_modular.java
| | | | M	examples/undocumented/java_modular/kernel_io_modular.java
| | | | M	examples/undocumented/java_modular/kernel_linear_byte_modular.java
| | | | M	examples/undocumented/java_modular/kernel_linear_modular.java
| | | | M	examples/undocumented/java_modular/kernel_linear_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_linear_word_modular.java
| | | | M	examples/undocumented/java_modular/kernel_local_alignment_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_locality_improved_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_log_modular.java
| | | | M	examples/undocumented/java_modular/kernel_match_word_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_multiquadric_modular.java
| | | | M	examples/undocumented/java_modular/kernel_oligo_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_poly_match_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_poly_match_word_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_poly_modular.java
| | | | M	examples/undocumented/java_modular/kernel_power_modular.java
| | | | M	examples/undocumented/java_modular/kernel_rationalquadratic_modular.java
| | | | M	examples/undocumented/java_modular/kernel_salzberg_word_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_sigmoid_modular.java
| | | | M	examples/undocumented/java_modular/kernel_simple_locality_improved_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_spherical_modular.java
| | | | M	examples/undocumented/java_modular/kernel_spline_modular.java
| | | | M	examples/undocumented/java_modular/kernel_top_modular.java
| | | | M	examples/undocumented/java_modular/kernel_tstudent_modular.java
| | | | M	examples/undocumented/java_modular/kernel_wave_modular.java
| | | | M	examples/undocumented/java_modular/kernel_wavelet_modular.java
| | | | M	examples/undocumented/java_modular/kernel_weighted_comm_word_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_weighted_degree_position_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_weighted_degree_string_modular.java
| | | | M	examples/undocumented/java_modular/mkl_binclass_modular.java
| | | | M	examples/undocumented/java_modular/mkl_multiclass_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_classicisomap_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_classicmds_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_isomap_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_kernelpcacut_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_landmarkisomap_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_landmarkmds_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_locallylinearembedding_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_logplusone_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_normone_modular.java
| | | | A	examples/undocumented/java_modular/preprocessor_pca_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_prunevarsubmean_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_randomfouriergausspreproc_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_sortulongstring_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_sortwordstring_modular.java
| | | | M	examples/undocumented/java_modular/regression_krr_modular.java
| | | | M	examples/undocumented/java_modular/regression_libsvr_modular.java
| | | | M	examples/undocumented/java_modular/regression_svrlight_modular.java
| | | | M	examples/undocumented/java_modular/serialization_complex_example.java
| | | | M	examples/undocumented/java_modular/serialization_svmlight_modular.java
| | | | M	examples/undocumented/java_modular/tests_check_commwordkernel_memleak_modular.java
| | | |       
* | | |   commit 2399d29c2d8889531388a2b15dc4138cfd93a639
|\ \ \ \  Merge: 5ac6102 963da14
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Thu Jul 21 08:20:15 2011 -0700
| | | | | 
| | | | |     Merge pull request #221 from karlnapf/master
| | | | |     
| | | | |     changes towards kernel machine model storage
| | | | |      
| * | | | commit 963da14fdd1aa6673f59559d7d0129e450993f39
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 17:09:25 2011 +0200
| | | | | 
| | | | |     renamed train() to train_kernel_machine() which is private and being called from KernelMachine
| | | | | 
| | | | | M	src/shogun/classifier/mkl/MKL.cpp
| | | | | M	src/shogun/classifier/mkl/MKL.h
| | | | | M	src/shogun/classifier/mkl/MKLMultiClass.cpp
| | | | | M	src/shogun/classifier/mkl/MKLMultiClass.h
| | | | | M	src/shogun/classifier/svm/CPLEXSVM.cpp
| | | | | M	src/shogun/classifier/svm/CPLEXSVM.h
| | | | | M	src/shogun/classifier/svm/DomainAdaptationSVM.cpp
| | | | | M	src/shogun/classifier/svm/DomainAdaptationSVM.h
| | | | | M	src/shogun/classifier/svm/GMNPSVM.cpp
| | | | | M	src/shogun/classifier/svm/GMNPSVM.h
| | | | | M	src/shogun/classifier/svm/GNPPSVM.cpp
| | | | | M	src/shogun/classifier/svm/GNPPSVM.h
| | | | | M	src/shogun/classifier/svm/GPBTSVM.cpp
| | | | | M	src/shogun/classifier/svm/GPBTSVM.h
| | | | | M	src/shogun/classifier/svm/LaRank.cpp
| | | | | M	src/shogun/classifier/svm/LaRank.h
| | | | | M	src/shogun/classifier/svm/LibSVM.cpp
| | | | | M	src/shogun/classifier/svm/LibSVM.h
| | | | | M	src/shogun/classifier/svm/LibSVMMultiClass.cpp
| | | | | M	src/shogun/classifier/svm/LibSVMMultiClass.h
| | | | | M	src/shogun/classifier/svm/LibSVMOneClass.cpp
| | | | | M	src/shogun/classifier/svm/LibSVMOneClass.h
| | | | | M	src/shogun/classifier/svm/MPDSVM.cpp
| | | | | M	src/shogun/classifier/svm/MPDSVM.h
| | | | | M	src/shogun/classifier/svm/SVMLight.cpp
| | | | | M	src/shogun/classifier/svm/SVMLight.h
| | | | | M	src/shogun/classifier/svm/SVMLightOneClass.cpp
| | | | | M	src/shogun/classifier/svm/SVMLightOneClass.h
| | | | | M	src/shogun/classifier/svm/ScatterSVM.cpp
| | | | | M	src/shogun/classifier/svm/ScatterSVM.h
| | | | | M	src/shogun/regression/KRR.cpp
| | | | | M	src/shogun/regression/KRR.h
| | | | | M	src/shogun/regression/svr/LibSVR.cpp
| | | | | M	src/shogun/regression/svr/LibSVR.h
| | | | | M	src/shogun/regression/svr/SVRLight.cpp
| | | | | M	src/shogun/regression/svr/SVRLight.h
| | | | |      
| * | | | commit 4a2bcb739095e9f202f44bb81062b964e95961af
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 17:09:14 2011 +0200
| | | | | 
| | | | |     added has_subset method
| | | | | 
| | | | | M	src/shogun/features/Features.h
| | | | |      
| * | | | commit 608d4641c74842a3ad8de4b9e0067db30ad6e265
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 17:07:45 2011 +0200
| | | | | 
| | | | |     added comments
| | | | | 
| | | | | M	src/shogun/machine/KernelMachine.h
| | | | |      
| * | | | commit 545972e1e9e293165b24ed27c920c4e5c0694699
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 17:07:31 2011 +0200
| | | | | 
| | | | |     forbid subset on lhs when calling apply
| | | | | 
| | | | | M	src/shogun/machine/KernelMachine.cpp
| | | | |      
| * | | | commit 0c66e74c3b557354c97ad70d520b7494738040cb
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 16:49:08 2011 +0200
| | | | | 
| | | | |     removed warning
| | | | | 
| | | | | M	src/shogun/structure/SegmentLoss.cpp
| | | | |      
| * | | | commit bfa3fad6556bb3d70619c82df635e040f87c6139
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 16:48:20 2011 +0200
| | | | | 
| | | | |     removed KernelPerceptron
| | | | | 
| | | | | M	src/shogun/ui/GUIClassifier.cpp
| | | | |      
| * | | | commit 7a629ffac127f9a3cdc5f7a45adea74a28707f00
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 16:47:02 2011 +0200
| | | | | 
| | | | |     removed debug stuff
| | | | | 
| | | | | M	src/shogun/machine/KernelMachine.h
| | | | |      
| * | | | commit 87d622b4ed714fd2a9b15e677909483dfbce1dcb
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 16:41:02 2011 +0200
| | | | | 
| | | | |     added method to copy a subset of features
| | | | | 
| | | | | M	src/shogun/features/Features.h
| | | | |      
| * | | | commit ebad67e9b3dfb23db8ce3cee29da9e7739458e27
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 16:40:15 2011 +0200
| | | | | 
| | | | |     added store_sv_features method to store SV data after training locally
| | | | |     some changes go along with this
| | | | |     train method now calls train_kernel_machine
| | | | | 
| | | | | M	src/shogun/machine/KernelMachine.cpp
| | | | | M	src/shogun/machine/KernelMachine.h
| | | | |      
| * | | | commit 1eb0e2355284abce73ccd74b1d332e78b0e104ff
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 16:38:57 2011 +0200
| | | | | 
| | | | |     removed KernelPerceptron
| | | | | 
| | | | | M	src/interfaces/modular/Classifier.i
| | | | | M	src/interfaces/modular/Classifier_includes.i
| | | | | D	src/shogun/classifier/KernelPerceptron.cpp
| | | | | D	src/shogun/classifier/KernelPerceptron.h
| | | | |      
| * | | | commit 4599e80c41597b02d88c81ae9e6eb5b1c03fb771
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 15:02:15 2011 +0200
| | | | | 
| | | | |     fixed compile error
| | | | | 
| | | | | M	src/shogun/mathematics/Math.h
| | | | |      
| * | | | commit 15a9a2ff1d4828b312a9e2fe4a3774af80aaf8b5
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 15:02:06 2011 +0200
| | | | | 
| | | | |     better assert
| | | | | 
| | | | | M	src/shogun/mathematics/Statistics.cpp
| | | | |        
* | | | |   commit 5ac61021fb14249b0270ba77eca07e1a35e5233e
|\ \ \ \ \  Merge: 541e13e c3d0e6d
| | |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | |   Date:   Thu Jul 21 06:25:55 2011 -0700
| | | | |   
| | | | |       Merge pull request #220 from sploving/master
| | | | |       
| | | | |       add generator.lua
| | | | |      
| * | | | commit c3d0e6d9f092cd80dede9852d10a6d9588e23987
| | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | Date:   Thu Jul 21 20:18:18 2011 +0800
| | | | | 
| | | | |     add generator.lua
| | | | | 
| | | | | A	testsuite/lua_modular/generator.lua
| | | | |      
| * | | | commit b3eb3765ad8358821da2e068dff15bbd2ccd8a71
| | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | Date:   Wed Jul 20 21:56:02 2011 +0800
| | | | | 
| | | | |     add serialization_complex_example.lua
| | | | | 
| | | | | A	examples/undocumented/lua_modular/serialization_complex_example.lua
| | | | | M	src/interfaces/lua_modular/shogun.lua
| | | | |        
* | | | |   commit 541e13e1d053411e8b8e742fc405fcb4312bab38
|\ \ \ \ \  Merge: ef357f2 77cda69
| | |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | |   Date:   Wed Jul 20 10:59:10 2011 -0700
| | | | |   
| | | | |       Merge pull request #218 from karlnapf/master
| | | | |       
| | | | |       use SGVector for KernelMachine svs and alphas
| | | | |        
| * | | |   commit 77cda696b2ca9a89c50f7e9bb4411d4c8515eca7
| |\ \ \ \  Merge: 9e9338a 91d2b12
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Jul 20 17:15:54 2011 +0200
| | | | | | 
| | | | | |     Merge branch 'master' of github.com:karlnapf/shogun
| | | | | |       
| | * | | | commit 91d2b122042604601b732a238c88b43d349e20ab
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Jul 20 17:13:58 2011 +0200
| | | | | | 
| | | | | |     removed a warning
| | | | | | 
| | | | | | M	src/shogun/kernel/Kernel.cpp
| | | | | |       
| | * | | | commit ccd35adab282352ceb14dd00e942884b1e83a413
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Jul 20 17:13:50 2011 +0200
| | | | | | 
| | | | | |     applied SGVector changes in KernelMachine
| | | | | | 
| | | | | | M	src/shogun/classifier/svm/SVMLight.cpp
| | | | | |       
| | * | | | commit e6252645b301d7cc4d2cae1c9871a2d56c4eb49e
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Jul 20 17:13:32 2011 +0200
| | | | | | 
| | | | | |     usage of SGVector for support vectors and alpha coefficients
| | | | | | 
| | | | | | M	src/shogun/machine/KernelMachine.cpp
| | | | | | M	src/shogun/machine/KernelMachine.h
| | | | | |       
| * | | | | commit 9e9338ada1fdbfe3f9cc3c9e85e7857f31027bee
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Jul 20 17:13:58 2011 +0200
| | | | | | 
| | | | | |     removed a warning
| | | | | | 
| | | | | | M	src/shogun/kernel/Kernel.cpp
| | | | | |       
| * | | | | commit 60be54821762fa6c4d8c923007c017b4d0803b4a
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Jul 20 17:13:50 2011 +0200
| | | | | | 
| | | | | |     applied SGVector changes in KernelMachine
| | | | | | 
| | | | | | M	src/shogun/classifier/svm/SVMLight.cpp
| | | | | |       
| * | | | | commit 96570bde463f21befc2e3c8041f7325246de8d93
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Jul 20 17:13:32 2011 +0200
| | | | | | 
| | | | | |     usage of SGVector for support vectors and alpha coefficients
| | | | | | 
| | | | | | M	src/shogun/machine/KernelMachine.cpp
| | | | | | M	src/shogun/machine/KernelMachine.h
| | | | | |         
* | | | | |   commit ef357f2a6ff48da25c96f19b17242742c0a87555
|\ \ \ \ \ \  Merge: eeec47b dc33d39
| |/ / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | | |   Date:   Wed Jul 20 10:57:40 2011 -0700
| | | | | |   
| | | | | |       Merge pull request #219 from alesis/gmm
| | | | | |       
| | | | | |       Example and fix
| | | | | |       
| * | | | | commit dc33d39f1697de5fd52662911d1ac7e54b114264
|/ / / / /  Author: Alesis Novik <alesisnov@gmail.com>
| | | | |   Date:   Tue Jul 19 23:45:06 2011 +0100
| | | | |   
| | | | |       Example and fix
| | | | |   
| | | | |   A	examples/undocumented/python_modular/clustering_gmm_modular.py
| | | | |   M	examples/undocumented/python_modular/graphical/em_2d_gmm.py
| | | | |      
* | | | | commit eeec47b285abbed7c9123737589f015b03243c7f
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Wed Jul 20 16:30:06 2011 +0200
| | | | | 
| | | | |     comment these typemaps - they just don't work yet
| | | | | 
| | | | | M	src/interfaces/csharp_modular/swig_typemaps.i
| | | | |        
* | | | |   commit 9cd2e5e1378c72c57b4a8711a7721d3bb28ae804
|\ \ \ \ \  Merge: 43cd548 0e4d085
| | |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | |   Date:   Wed Jul 20 06:35:05 2011 -0700
| | | | |   
| | | | |       Merge pull request #217 from sploving/master
| | | | |       
| | | | |       add some more lua examples
| | | | |      
| * | | | commit 0e4d08584523a36db40a6a935f92ff7d5d439e0d
| | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | Date:   Wed Jul 20 15:12:53 2011 +0800
| | | | | 
| | | | |     regression_krr_modular.lua
| | | | | 
| | | | | A	examples/undocumented/lua_modular/regression_krr_modular.lua
| | | | |      
| * | | | commit 181e6650360adbc5c44b7f220b7682fda9d2a967
| | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | Date:   Wed Jul 20 15:09:27 2011 +0800
| | | | | 
| | | | |     add preprocessor_classicisomap example
| | | | | 
| | | | | A	examples/undocumented/lua_modular/preprocessor_classicisomap_modular.lua
| | | | | M	src/interfaces/lua_modular/shogun.lua
| | | | |      
| * | | | commit 355c82cb2b7e7a969f5aeca3ded2ef7577b7e3be
| | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | Date:   Wed Jul 20 15:04:58 2011 +0800
| | | | | 
| | | | |     add features_simple_real_modular example
| | | | | 
| | | | | A	examples/undocumented/lua_modular/features_simple_real_modular.lua
| | | | |      
| * | | | commit 2c98bc0a75c1e8b0eb7c1c0bdf52e304295f31b7
| | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | Date:   Wed Jul 20 14:56:41 2011 +0800
| | | | | 
| | | | |     fix typo
| | | | | 
| | | | | M	examples/undocumented/lua_modular/evaluation_contingencytableevaluation_modular.lua
| | | | |      
| * | | | commit 026cf32b2b41a1d85ca8b01180fefb9e2339ef5f
| | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | Date:   Wed Jul 20 14:42:28 2011 +0800
| | | | | 
| | | | |     add evaluation_contingencytableevaluation_modular example
| | | | | 
| | | | | A	examples/undocumented/lua_modular/evaluation_contingencytableevaluation_modular.lua
| | | | | M	src/interfaces/lua_modular/shogun.lua
| | | | |        
* | | | |   commit 43cd548bfad5a1d09b5fcf309962e3605445937e
|\ \ \ \ \  Merge: 1e6799c 3d831f7
| | |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | |   Date:   Wed Jul 20 05:36:55 2011 -0700
| | | | |   
| | | | |       Merge pull request #216 from karlnapf/master
| | | | |       
| | | | |       confidence interval example and some minor fixes
| | | | |      
| * | | | commit 3d831f7622ed9657297e2b0acf5e6646b7ff41c1
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jul 20 14:33:34 2011 +0200
| | | | | 
| | | | |     fixed mem-leak
| | | | | 
| | | | | M	examples/undocumented/libshogun/mathematics_confidence_intervals.cpp
| | | | |      
| * | | | commit 5de9e44d70028b679ddebb10f47a8e1ec8f3e541
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jul 20 14:30:53 2011 +0200
| | | | | 
| | | | |     corrected includes
| | | | | 
| | | | | M	src/shogun/mathematics/Statistics.cpp
| | | | | M	src/shogun/mathematics/Statistics.h
| | | | |      
| * | | | commit 7055cec2fba430ac82b60c714bfeff11f532db0c
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jul 20 14:27:28 2011 +0200
| | | | | 
| | | | |     added confidence interval example
| | | | | 
| | | | | M	examples/undocumented/libshogun/Makefile
| | | | |      
| * | | | commit a19dcaea1b2b9d109465c8e893bb6f94f5d206e1
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jul 20 14:26:42 2011 +0200
| | | | | 
| | | | |     initial add
| | | | | 
| | | | | A	examples/undocumented/libshogun/mathematics_confidence_intervals.cpp
| | | | |      
| * | | | commit 2898c6a4866eb303909eb00648f84c1baddc7e26
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jul 20 14:26:36 2011 +0200
| | | | | 
| | | | |     use absolute value of inverse student t value (symmetric anyways)
| | | | | 
| | | | | M	src/shogun/mathematics/Statistics.cpp
| | | | |      
| * | | | commit 4c34b9726b6c745062115a011d75ce44f373eba7
|/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Wed Jul 20 14:08:25 2011 +0200
| | | |   
| | | |       added important comment
| | | |   
| | | |   M	src/shogun/mathematics/Statistics.h
| | | |     
* | | | commit 1e6799c31de7225cce2179692e93d492e39d056c
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Jul 20 09:16:09 2011 +0200
| | | | 
| | | |     install modshogun in base level directory and only underneath in
| | | |     shogun/* Kernel, Features, ... compatibility helpers
| | | | 
| | | | M	src/Makefile.template
| | | |       
* | | |   commit f2b409277e46e9a32fc428d63cda2673278fa62b
|\ \ \ \  Merge: 417cfbb d4aa6d9
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Tue Jul 19 23:46:53 2011 -0700
| | | |   
| | | |       Merge pull request #215 from frx/streaming_1
| | | |       
| | | |       Use of pthread_cond_wait in place of busy-loop in parser
| | | |     
| * | | commit d4aa6d9a084d32da144b94d2b8a7f3e1b5cd3e61
|/ / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | |   Date:   Wed Jul 20 10:23:00 2011 +0530
| | |   
| | |       Parser changed to use condition variable waiting in place of the spinlock.
| | |   
| | |   M	src/shogun/io/InputParser.h
| | |    
* | | commit 417cfbbd42809aad7a18eb81bf4fb72d83bfc3b0
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jul 20 02:52:22 2011 +0200
| | | 
| | |     doxygen support for python_modular's modshogun
| | | 
| | | M	src/.generate_link_dependencies.py
| | | M	src/configure
| | | M	src/interfaces/modular/Classifier.i
| | | M	src/interfaces/modular/Clustering.i
| | | M	src/interfaces/modular/Distance.i
| | | M	src/interfaces/modular/Distribution.i
| | | M	src/interfaces/modular/Evaluation.i
| | | M	src/interfaces/modular/Features.i
| | | M	src/interfaces/modular/IO.i
| | | M	src/interfaces/modular/Kernel.i
| | | M	src/interfaces/modular/Library.i
| | | M	src/interfaces/modular/Mathematics.i
| | | M	src/interfaces/modular/ModelSelection.i
| | | M	src/interfaces/modular/Preprocessor.i
| | | M	src/interfaces/modular/Regression.i
| | | M	src/interfaces/modular/Structure.i
| | | A	src/interfaces/modular/modshogun.doxy
| | | M	src/interfaces/modular/modshogun.i
| | |      
* | |   commit e31becc5899810fd0b8cc63b8bdbbc473ebe4b71
|\ \ \  Merge: ec1939d 00691c6
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 19 17:22:27 2011 -0700
| | | | 
| | | |     Merge pull request #214 from karlnapf/master
| | | |     
| | | |     introduced CStatistics class
| | | |     
| * | | commit 00691c6073797e5887d689e5ce6cc6b4bdc0d2e9
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 19 20:24:33 2011 +0200
| | | | 
| | | |     removed a warning
| | | | 
| | | | M	src/shogun/kernel/SqrtDiagKernelNormalizer.h
| | | |     
| * | | commit 06ba167dd5629f0916fcf6a317e60fce62af78c2
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 19 20:22:36 2011 +0200
| | | | 
| | | |     marked mean method as deprecated
| | | | 
| | | | M	src/shogun/mathematics/Math.h
| | | |     
| * | | commit 961441f94cbf3df29047f648e3851f9f89effa08
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 19 20:19:59 2011 +0200
| | | | 
| | | |     initial add
| | | |     -includes methods to compute confidence intervals using the student's t distribution
| | | | 
| | | | A	src/shogun/mathematics/Statistics.cpp
| | | | A	src/shogun/mathematics/Statistics.h
| | | |     
| * | | commit 134ed8b53aa837a3d6b9e18a6fda318992b3aa9f
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 19 20:16:44 2011 +0200
| | | | 
| | | |     added some constants and gnu math function wrappers
| | | | 
| | | | M	src/shogun/mathematics/Math.cpp
| | | | M	src/shogun/mathematics/Math.h
| | | |       
* | | |   commit ec1939de4689ba2fcac3a236741bf768c2a67598
|\ \ \ \  Merge: 4b9fc30 0454959
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Wed Jul 20 02:19:50 2011 +0200
| | | | | 
| | | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | | |        
| * | | |   commit 0454959dadac42b2c09dd085c2a052a02e20b6dd
| |\ \ \ \  Merge: 44cf499 8286ce3
| | |/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | |   Date:   Tue Jul 19 23:43:47 2011 +0400
| | | | |   
| | | | |       Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | | |      
| * | | | commit 44cf4999f8e2f345c920d7b4f99a91c800e5cd36
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Tue Jul 19 23:43:39 2011 +0400
| | | | | 
| | | | |     Fixed z_matrix size at LocallyLinearEmbedding
| | | | | 
| | | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | | |      
* | | | | commit 4b9fc307eee4243bda374af1018d0c947fde722a
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Wed Jul 20 02:14:44 2011 +0200
| | | |   
| | | |       Just create a single modshogun object for the modular interfaces. While
| | | |       this increases wrapper size (memory requirements when compiling) - it
| | | |       avoids all the issues we were having utilizing %import and multiple swig
| | | |       modules. Namely octave_modular is now working reliably / rock-stable.
| | | |       Require order in lua_modular decides no longer if sth works or not, etc
| | | |       
| | | |       To reduce wrapper size the Array* wrappings were removed from the
| | | |       interfaces and std.i is no longer included.
| | | |   
| | | |   M	README
| | | |   M	examples/undocumented/java_modular/kernel_gaussian_modular.java
| | | |   M	examples/undocumented/lua_modular/check.sh
| | | |   M	examples/undocumented/lua_modular/distance_braycurtis_modular.lua
| | | |   M	src/Makefile.template
| | | |   M	src/interfaces/lua_modular/shogun.lua
| | | |   D	src/interfaces/modular/Classifier.doxy
| | | |   M	src/interfaces/modular/Classifier.i
| | | |   D	src/interfaces/modular/Clustering.doxy
| | | |   M	src/interfaces/modular/Clustering.i
| | | |   D	src/interfaces/modular/Distance.doxy
| | | |   M	src/interfaces/modular/Distance.i
| | | |   D	src/interfaces/modular/Distribution.doxy
| | | |   M	src/interfaces/modular/Distribution.i
| | | |   D	src/interfaces/modular/Evaluation.doxy
| | | |   M	src/interfaces/modular/Evaluation.i
| | | |   D	src/interfaces/modular/Features.doxy
| | | |   M	src/interfaces/modular/Features.i
| | | |   D	src/interfaces/modular/IO.doxy
| | | |   M	src/interfaces/modular/IO.i
| | | |   D	src/interfaces/modular/Kernel.doxy
| | | |   M	src/interfaces/modular/Kernel.i
| | | |   D	src/interfaces/modular/Library.doxy
| | | |   M	src/interfaces/modular/Library.i
| | | |   D	src/interfaces/modular/Mathematics.doxy
| | | |   M	src/interfaces/modular/Mathematics.i
| | | |   D	src/interfaces/modular/ModelSelection.doxy
| | | |   M	src/interfaces/modular/ModelSelection.i
| | | |   D	src/interfaces/modular/Preprocessor.doxy
| | | |   M	src/interfaces/modular/Preprocessor.i
| | | |   D	src/interfaces/modular/Regression.doxy
| | | |   M	src/interfaces/modular/Regression.i
| | | |   M	src/interfaces/modular/SGBase.i
| | | |   D	src/interfaces/modular/Structure.doxy
| | | |   M	src/interfaces/modular/Structure.i
| | | |   A	src/interfaces/modular/modshogun.i
| | | |       
* | | |   commit 8286ce3c7ce74c4caacbc79dd7fe97913841a046
|\ \ \ \  Merge: 6dab54f 9fb1c7c
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Tue Jul 19 17:06:21 2011 +0200
| | | |   
| | | |       Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |     
| * | | commit 9fb1c7cdd87c1976afb5121ec953c4139ef5ecf3
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Tue Jul 19 17:27:27 2011 +0400
| | | | 
| | | |     Design improvement for LocallyLinearEmbedding
| | | | 
| | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | | |     
* | | | commit 6dab54f7d71500a7d350d0f8c6d4b1e1c43823d0
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Tue Jul 19 17:05:00 2011 +0200
| | |   
| | |       zero poim before computing it
| | |   
| | |   M	src/shogun/distributions/PositionalPWM.cpp
| | |   M	src/shogun/distributions/PositionalPWM.h
| | |    
* | | commit dc9ddee591a319a302297bc9155d4f9ecf381dbb
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jul 19 14:31:30 2011 +0200
| | | 
| | |     remove get_distance_matrix(float64_t** dst, int32_t* m, int32_t* n) and
| | |     adjust preprocs accordingly
| | | 
| | | M	src/shogun/distance/Distance.cpp
| | | M	src/shogun/distance/Distance.h
| | | M	src/shogun/preprocessor/Isomap.h
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | |      
* | |   commit 003fbf5fa073970ec1ca143fea0f49c4ef39bf9d
|\ \ \  Merge: 33f0c26 360ef02
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 19 05:10:44 2011 -0700
| | | | 
| | | |     Merge pull request #213 from sploving/master
| | | |     
| | | |     add AveragedPerceptron for classifier
| | | |     
| * | | commit 360ef02a9da9800b9598d21f1e92510c1d2adb86
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Tue Jul 19 20:09:33 2011 +0800
| | | | 
| | | |     add AveragedPerceptron for classifier
| | | | 
| | | | M	src/interfaces/lua_modular/shogun.lua
| | | |     
* | | | commit 33f0c26827c48577297f765a4a7f6d19271ce416
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 19 14:06:37 2011 +0200
| | | | 
| | | |     add lua example check script
| | | | 
| | | | A	examples/undocumented/lua_modular/check.sh
| | | |     
* | | | commit 584c096427cc8cda49b9e7dcc509ee2670889779
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 19 13:38:33 2011 +0200
| | | | 
| | | |     fix build failure w/ {IO,Mathematics,ModelSelection}_doxygen.i
| | | | 
| | | | M	src/.generate_link_dependencies.py
| | | |     
* | | | commit 2682d26dca45941b8b02d1ecb2e404ae0c416f18
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 19 13:13:08 2011 +0200
| | | | 
| | | |     enable java autodetection
| | | | 
| | | | M	src/configure
| | | |       
* | | |   commit b908d51c942f58d315d976f3da5ee63846089e79
|\ \ \ \  Merge: 3c9006f 909ad5f
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Tue Jul 19 04:11:47 2011 -0700
| | | |   
| | | |       Merge pull request #212 from sploving/master
| | | |       
| | | |       add a lua  kernel  example
| | | |     
| * | | commit 909ad5f5feb413b2716096eecb0c8b25d279fd02
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Tue Jul 19 18:42:36 2011 +0800
| | | | 
| | | |     add one kernel example
| | | | 
| | | | A	examples/undocumented/lua_modular/kernel_gaussian_modular.lua
| | | |       
* | | |   commit 3c9006f0afbf3594fc6f80206f4e9a7342cfe238
|\ \ \ \  Merge: 6d22179 7118c47
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Tue Jul 19 03:37:26 2011 -0700
| | | |   
| | | |       Merge pull request #211 from sploving/master
| | | |       
| | | |       add load.lua, two examples and lua doc
| | | |     
| * | | commit 7118c473172a25762f09c80b3008795e13117c9c
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Tue Jul 19 18:28:32 2011 +0800
| | | | 
| | | |     add one distance example
| | | | 
| | | | A	examples/undocumented/lua_modular/distance_braycurtis_modular.lua
| | | |     
| * | | commit 190958ea8c2566a1a42893d18c7d48681d73d6bf
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Tue Jul 19 18:27:39 2011 +0800
| | | | 
| | | |     add one classifier example
| | | | 
| | | | A	examples/undocumented/lua_modular/classifier_averaged_perceptron_modular.lua
| | | |     
| * | | commit 1bebd27f55a9e86739c1025667ae74a873198fa4
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Tue Jul 19 18:26:24 2011 +0800
| | | | 
| | | |     add lua doc for lua path set
| | | | 
| | | | M	doc/pages/ModularTutorial.mainpage
| | | |     
| * | | commit 8590caf191328308cb0665efb22ff8c90025e45e
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Tue Jul 19 18:15:07 2011 +0800
| | | | 
| | | |     add load.lua
| | | | 
| | | | A	examples/undocumented/lua_modular/load.lua
| | | |       
* | | |   commit 6d221799594fe7b28e8b573113880245893df193
|\ \ \ \  Merge: 21de43e 0a35e71
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Tue Jul 19 10:04:28 2011 +0200
| | | | | 
| | | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | | |        
| * | | |   commit 0a35e712a33d8e6fb92f4eebfada0df3d911f1be
| |\ \ \ \  Merge: 2a8980b 5f2d2b1
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Tue Jul 19 01:03:56 2011 -0700
| | | | | | 
| | | | | |     Merge pull request #210 from frx/streaming_1
| | | | | |     
| | | | | |     Transition to file descriptors in StreamingFeatures
| | | | | |       
| | * | | | commit 5f2d2b137263d8076cbf0f03fac713176017ee6a
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Tue Jul 19 12:54:00 2011 +0530
| | | | | | 
| | | | | |     Correction in include path in StreamingFile.
| | | | | | 
| | | | | | M	src/shogun/io/StreamingFile.h
| | | | | |         
| | * | | |   commit 9c42aa22b66118da67ee580d2c8c395f074bc35d
| | |\ \ \ \  Merge: 2a8980b 48366d4
| |/ / / / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | |   Date:   Tue Jul 19 12:35:06 2011 +0530
| | | | | |   
| | | | | |       Transition from file streams to descriptors for streaming features.
| | | | | |       
| | * | | | commit 48366d4999205776119d706953e01866dab0f77c
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Tue Jul 19 12:25:44 2011 +0530
| | | | | | 
| | | | | |     Corrected get_vector and get_vector_and_label to work with new non-null terminated strings from read_line.
| | | | | | 
| | | | | | M	src/shogun/lib/StreamingAsciiFile.cpp
| | | | | |       
| | * | | | commit ce95818b2bab096717e2c2d16d449fe0a5575655
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Tue Jul 19 10:09:26 2011 +0530
| | | | | | 
| | | | | |     Completed modification of StreamingAsciiFile to use buffer-proxied input.
| | | | | | 
| | | | | | M	src/shogun/lib/IOBuffer.cpp
| | | | | | M	src/shogun/lib/IOBuffer.h
| | | | | | M	src/shogun/lib/StreamingAsciiFile.cpp
| | | | | | M	src/shogun/lib/StreamingFile.cpp
| | | | | | M	src/shogun/lib/StreamingFile.h
| | | | | |       
| | * | | | commit 3994bb8fcfd609abc440e02715ddbd108e78b189
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Tue Jul 19 08:00:26 2011 +0530
| | | | | | 
| | | | | |     Updated v_array and IOBuffer to use v_array member functions.
| | | | | | 
| | | | | | M	src/shogun/lib/IOBuffer.cpp
| | | | | | M	src/shogun/lib/v_array.h
| | | | | |       
| | * | | | commit 8fce7e7fff066176fba9d09ecce77d8b6a173094
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Tue Jul 19 06:59:30 2011 +0530
| | | | | | 
| | | | | |     Initial changes in IOBuffer and StreamingFile to use file descriptors.
| | | | | | 
| | | | | | M	src/shogun/lib/IOBuffer.cpp
| | | | | | M	src/shogun/lib/IOBuffer.h
| | | | | | M	src/shogun/lib/StreamingFile.cpp
| | | | | | M	src/shogun/lib/StreamingFile.h
| | | | | |         
* | | | | |   commit 21de43e0e1c4d54d7a6626c9d0d68c86c34ecd8b
|\ \ \ \ \ \  Merge: 4a43d33 2a8980b
| |/ / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | |   Date:   Tue Jul 19 10:00:08 2011 +0200
| | | | | |   
| | | | | |       Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | | | |         
| * | | | |   commit 2a8980bc6e359af7fde90458d1717d11b0c584bc
| |\ \ \ \ \  Merge: 6c8f9ca ddc2e2a
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Mon Jul 18 23:29:07 2011 -0700
| | | | | | | 
| | | | | | |     Merge pull request #209 from alesis/gmm
| | | | | | |     
| | | | | | |     Added examples for GMM
| | | | | | |        
| | * | | | | commit ddc2e2af4bf5c4982bf7e192762d1c45ef1016a2
| | | |/ / /  Author: Alesis Novik <alesisnov@gmail.com>
| | |/| | |   Date:   Tue Jul 19 03:59:20 2011 +0100
| | | | | |   
| | | | | |       Added examples
| | | | | |   
| | | | | |   A	examples/undocumented/python_modular/graphical/em_1d_gmm.py
| | | | | |   A	examples/undocumented/python_modular/graphical/em_2d_gmm.py
| | | | | |       
* | | | | | commit 4a43d33a62e00e5666f16fec2e11fa431f2750a8
|/ / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | |   Date:   Tue Jul 19 09:58:02 2011 +0200
| | | | |   
| | | | |       fix examples and check-examples for libshogun
| | | | |   
| | | | |   M	examples/undocumented/libshogun/classifier_libsvm.cpp
| | | | |   M	examples/undocumented/libshogun/classifier_minimal_svm.cpp
| | | | |   M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| | | | |   M	examples/undocumented/libshogun/features_subset_labels.cpp
| | | | |   M	examples/undocumented/libshogun/kernel_gaussian.cpp
| | | | |   M	examples/undocumented/libshogun/kernel_revlin.cpp
| | | | |   M	examples/undocumented/libshogun/library_dyn_int.cpp
| | | | |   M	examples/undocumented/libshogun/library_indirect_object.cpp
| | | | |   M	examples/undocumented/libshogun/parameter_iterate_float64.cpp
| | | | |   M	examples/undocumented/libshogun/parameter_iterate_sgobject.cpp
| | | | |   M	examples/undocumented/libshogun/parameter_set_from_parameters.cpp
| | | | |   M	src/Makefile
| | | | |      
* | | | | commit 6c8f9ca9abd2dc64b7ed3311f997d2bbc236d916
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Tue Jul 19 00:07:09 2011 +0200
| | | | | 
| | | | |     rename IO class to SGIO to avoid IO (module) vs. IO (class) naming clash
| | | | | 
| | | | | M	src/NEWS
| | | | | M	src/README.developer
| | | | | M	src/interfaces/cmdline_static/CmdLineInterface.cpp
| | | | | M	src/interfaces/csharp_modular/sg_print_functions.cpp
| | | | | M	src/interfaces/java_modular/sg_print_functions.cpp
| | | | | M	src/interfaces/lua_modular/sg_print_functions.cpp
| | | | | M	src/interfaces/modular/SGBase.i
| | | | | M	src/interfaces/octave_modular/sg_print_functions.cpp
| | | | | M	src/interfaces/octave_static/OctaveInterface.cpp
| | | | | M	src/interfaces/python_modular/sg_print_functions.cpp
| | | | | M	src/interfaces/python_static/PythonInterface.cpp
| | | | | M	src/interfaces/r_static/RInterface.cpp
| | | | | M	src/interfaces/ruby_modular/sg_print_functions.cpp
| | | | | M	src/shogun/base/DynArray.h
| | | | | M	src/shogun/base/Parallel.h
| | | | | M	src/shogun/base/Parameter.h
| | | | | M	src/shogun/base/SGObject.cpp
| | | | | M	src/shogun/base/SGObject.h
| | | | | M	src/shogun/base/Version.h
| | | | | M	src/shogun/base/init.cpp
| | | | | M	src/shogun/base/init.h
| | | | | M	src/shogun/classifier/KNN.h
| | | | | M	src/shogun/classifier/PluginEstimate.cpp
| | | | | M	src/shogun/classifier/mkl/MKLMultiClass.cpp
| | | | | M	src/shogun/classifier/svm/CPLEXSVM.cpp
| | | | | M	src/shogun/classifier/svm/DomainAdaptationSVM.cpp
| | | | | M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | | | | M	src/shogun/classifier/svm/GMNPLib.h
| | | | | M	src/shogun/classifier/svm/GMNPSVM.cpp
| | | | | M	src/shogun/classifier/svm/GNPPLib.cpp
| | | | | M	src/shogun/classifier/svm/GNPPLib.h
| | | | | M	src/shogun/classifier/svm/GNPPSVM.cpp
| | | | | M	src/shogun/classifier/svm/GPBTSVM.cpp
| | | | | M	src/shogun/classifier/svm/LaRank.cpp
| | | | | M	src/shogun/classifier/svm/LaRank.h
| | | | | M	src/shogun/classifier/svm/LibLinear.cpp
| | | | | M	src/shogun/classifier/svm/LibSVM.cpp
| | | | | M	src/shogun/classifier/svm/LibSVMMultiClass.cpp
| | | | | M	src/shogun/classifier/svm/LibSVMOneClass.cpp
| | | | | M	src/shogun/classifier/svm/MPDSVM.cpp
| | | | | M	src/shogun/classifier/svm/MultiClassSVM.cpp
| | | | | M	src/shogun/classifier/svm/QPBSVMLib.cpp
| | | | | M	src/shogun/classifier/svm/QPBSVMLib.h
| | | | | M	src/shogun/classifier/svm/SVM.cpp
| | | | | M	src/shogun/classifier/svm/SVMLight.cpp
| | | | | M	src/shogun/classifier/svm/SVMLightOneClass.cpp
| | | | | M	src/shogun/classifier/svm/SVM_libsvm.cpp
| | | | | M	src/shogun/classifier/svm/ScatterSVM.cpp
| | | | | M	src/shogun/classifier/svm/gpdtsolve.cpp
| | | | | M	src/shogun/classifier/svm/gpm.cpp
| | | | | M	src/shogun/classifier/svm/libocas_common.h
| | | | | M	src/shogun/classifier/svm/pr_loqo.cpp
| | | | | M	src/shogun/classifier/svm/ssl.cpp
| | | | | M	src/shogun/clustering/Hierarchical.h
| | | | | M	src/shogun/clustering/KMeans.h
| | | | | M	src/shogun/distance/AttenuatedEuclidianDistance.cpp
| | | | | M	src/shogun/distance/BrayCurtisDistance.cpp
| | | | | M	src/shogun/distance/CanberraMetric.cpp
| | | | | M	src/shogun/distance/CanberraWordDistance.cpp
| | | | | M	src/shogun/distance/ChebyshewMetric.cpp
| | | | | M	src/shogun/distance/ChiSquareDistance.cpp
| | | | | M	src/shogun/distance/CosineDistance.cpp
| | | | | M	src/shogun/distance/CustomDistance.cpp
| | | | | M	src/shogun/distance/Distance.cpp
| | | | | M	src/shogun/distance/EuclidianDistance.cpp
| | | | | M	src/shogun/distance/GeodesicMetric.cpp
| | | | | M	src/shogun/distance/HammingWordDistance.cpp
| | | | | M	src/shogun/distance/JensenMetric.cpp
| | | | | M	src/shogun/distance/KernelDistance.cpp
| | | | | M	src/shogun/distance/ManhattanMetric.cpp
| | | | | M	src/shogun/distance/ManhattanWordDistance.cpp
| | | | | M	src/shogun/distance/MinkowskiMetric.cpp
| | | | | M	src/shogun/distance/SimpleDistance.h
| | | | | M	src/shogun/distance/SparseEuclidianDistance.cpp
| | | | | M	src/shogun/distance/TanimotoDistance.cpp
| | | | | M	src/shogun/distributions/HMM.cpp
| | | | | M	src/shogun/distributions/HMM.h
| | | | | M	src/shogun/distributions/Histogram.cpp
| | | | | M	src/shogun/distributions/LinearHMM.cpp
| | | | | M	src/shogun/evaluation/ContingencyTableEvaluation.h
| | | | | M	src/shogun/features/Alphabet.cpp
| | | | | M	src/shogun/features/CombinedDotFeatures.cpp
| | | | | M	src/shogun/features/CombinedFeatures.cpp
| | | | | M	src/shogun/features/DotFeatures.cpp
| | | | | M	src/shogun/features/ExplicitSpecFeatures.cpp
| | | | | M	src/shogun/features/ExplicitSpecFeatures.h
| | | | | M	src/shogun/features/FKFeatures.cpp
| | | | | M	src/shogun/features/Features.cpp
| | | | | M	src/shogun/features/HashedWDFeatures.cpp
| | | | | M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| | | | | M	src/shogun/features/ImplicitWeightedSpecFeatures.cpp
| | | | | M	src/shogun/features/ImplicitWeightedSpecFeatures.h
| | | | | M	src/shogun/features/Labels.cpp
| | | | | M	src/shogun/features/Labels.h
| | | | | M	src/shogun/features/RealFileFeatures.cpp
| | | | | M	src/shogun/features/SNPFeatures.cpp
| | | | | M	src/shogun/features/SimpleFeatures.h
| | | | | M	src/shogun/features/SparseFeatures.h
| | | | | M	src/shogun/features/StringFeatures.h
| | | | | M	src/shogun/features/StringFileFeatures.h
| | | | | M	src/shogun/features/Subset.cpp
| | | | | M	src/shogun/features/TOPFeatures.cpp
| | | | | M	src/shogun/features/WDFeatures.cpp
| | | | | M	src/shogun/io/AsciiFile.h
| | | | | M	src/shogun/io/BinaryFile.h
| | | | | M	src/shogun/io/BinaryStream.h
| | | | | M	src/shogun/io/HDF5File.h
| | | | | M	src/shogun/io/IOBuffer.h
| | | | | M	src/shogun/io/InputParser.h
| | | | | M	src/shogun/io/LibSVMFile.h
| | | | | M	src/shogun/io/MemoryMappedFile.h
| | | | | A	src/shogun/io/SGIO.cpp
| | | | | A	src/shogun/io/SGIO.h
| | | | | M	src/shogun/io/SimpleFile.h
| | | | | M	src/shogun/io/StreamingFile.h
| | | | | D	src/shogun/io/io.cpp
| | | | | D	src/shogun/io/io.h
| | | | | M	src/shogun/kernel/AUCKernel.cpp
| | | | | M	src/shogun/kernel/Chi2Kernel.cpp
| | | | | M	src/shogun/kernel/CombinedKernel.cpp
| | | | | M	src/shogun/kernel/CombinedKernel.h
| | | | | M	src/shogun/kernel/CommUlongStringKernel.cpp
| | | | | M	src/shogun/kernel/CommWordStringKernel.cpp
| | | | | M	src/shogun/kernel/ConstKernel.cpp
| | | | | M	src/shogun/kernel/CustomKernel.cpp
| | | | | M	src/shogun/kernel/DiagKernel.cpp
| | | | | M	src/shogun/kernel/DistanceKernel.cpp
| | | | | M	src/shogun/kernel/DotKernel.h
| | | | | M	src/shogun/kernel/ExponentialKernel.cpp
| | | | | M	src/shogun/kernel/FixedDegreeStringKernel.cpp
| | | | | M	src/shogun/kernel/GaussianKernel.cpp
| | | | | M	src/shogun/kernel/GaussianMatchStringKernel.cpp
| | | | | M	src/shogun/kernel/GaussianShiftKernel.cpp
| | | | | M	src/shogun/kernel/GaussianShortRealKernel.cpp
| | | | | M	src/shogun/kernel/HistogramIntersectionKernel.cpp
| | | | | M	src/shogun/kernel/HistogramWordStringKernel.cpp
| | | | | M	src/shogun/kernel/Kernel.cpp
| | | | | M	src/shogun/kernel/LinearKernel.cpp
| | | | | M	src/shogun/kernel/LinearStringKernel.cpp
| | | | | M	src/shogun/kernel/LocalityImprovedStringKernel.cpp
| | | | | M	src/shogun/kernel/MatchWordStringKernel.cpp
| | | | | M	src/shogun/kernel/PolyKernel.cpp
| | | | | M	src/shogun/kernel/PolyMatchStringKernel.cpp
| | | | | M	src/shogun/kernel/PolyMatchWordStringKernel.cpp
| | | | | M	src/shogun/kernel/PyramidChi2.cpp
| | | | | M	src/shogun/kernel/RegulatoryModulesStringKernel.cpp
| | | | | M	src/shogun/kernel/SNPStringKernel.cpp
| | | | | M	src/shogun/kernel/SalzbergWordStringKernel.cpp
| | | | | M	src/shogun/kernel/ScatterKernelNormalizer.h
| | | | | M	src/shogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| | | | | M	src/shogun/kernel/SparseSpatialSampleStringKernel.cpp
| | | | | M	src/shogun/kernel/SpectrumMismatchRBFKernel.cpp
| | | | | M	src/shogun/kernel/SpectrumRBFKernel.cpp
| | | | | M	src/shogun/kernel/SplineKernel.cpp
| | | | | M	src/shogun/kernel/TensorProductPairKernel.cpp
| | | | | M	src/shogun/kernel/WeightedCommWordStringKernel.cpp
| | | | | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | | | | M	src/shogun/kernel/WeightedDegreeRBFKernel.cpp
| | | | | M	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | | | | M	src/shogun/lib/BitString.h
| | | | | M	src/shogun/lib/Cache.h
| | | | | M	src/shogun/lib/Compressor.h
| | | | | M	src/shogun/lib/DynInt.h
| | | | | M	src/shogun/lib/Signal.cpp
| | | | | M	src/shogun/lib/Time.cpp
| | | | | M	src/shogun/lib/Time.h
| | | | | M	src/shogun/lib/Trie.cpp
| | | | | M	src/shogun/lib/Trie.h
| | | | | M	src/shogun/machine/KernelMachine.h
| | | | | M	src/shogun/mathematics/Cplex.cpp
| | | | | M	src/shogun/mathematics/Loss.h
| | | | | M	src/shogun/mathematics/Math.cpp
| | | | | M	src/shogun/mathematics/Math.h
| | | | | M	src/shogun/mathematics/arpack.cpp
| | | | | M	src/shogun/mathematics/arpack.h
| | | | | M	src/shogun/mathematics/lapack.cpp
| | | | | M	src/shogun/preprocessor/ClassicMDS.cpp
| | | | | M	src/shogun/preprocessor/Isomap.h
| | | | | M	src/shogun/preprocessor/KernelPCACut.cpp
| | | | | M	src/shogun/preprocessor/LandmarkMDS.cpp
| | | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | | | M	src/shogun/preprocessor/PCA.cpp
| | | | | M	src/shogun/preprocessor/Preprocessor.cpp
| | | | | M	src/shogun/preprocessor/PruneVarSubMean.cpp
| | | | | M	src/shogun/regression/svr/LibSVR.cpp
| | | | | M	src/shogun/regression/svr/SVRLight.cpp
| | | | | M	src/shogun/structure/DynProg.cpp
| | | | | M	src/shogun/structure/DynProg.h
| | | | | M	src/shogun/structure/IntronList.cpp
| | | | | M	src/shogun/structure/Plif.cpp
| | | | | M	src/shogun/structure/PlifArray.cpp
| | | | | M	src/shogun/structure/SegmentLoss.cpp
| | | | | M	src/shogun/ui/GUIClassifier.cpp
| | | | | M	src/shogun/ui/GUIDistance.cpp
| | | | | M	src/shogun/ui/GUIFeatures.cpp
| | | | | M	src/shogun/ui/GUIKernel.cpp
| | | | | M	src/shogun/ui/GUILabels.cpp
| | | | | M	src/shogun/ui/GUIMath.cpp
| | | | | M	src/shogun/ui/GUIPluginEstimate.cpp
| | | | | M	src/shogun/ui/GUIPreprocessor.cpp
| | | | | M	src/shogun/ui/GUISignals.cpp.orig
| | | | | M	src/shogun/ui/GUIStructure.cpp
| | | | | M	src/shogun/ui/SGInterface.cpp
| | | | |      
* | | | | commit 4c71689ff029f1c900adad6a2cb1b89e57f856f9
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Jul 18 23:19:35 2011 +0200
| | | | | 
| | | | |     mention doxy files in link dependency generator
| | | | | 
| | | | | M	src/.generate_link_dependencies.py
| | | | |      
* | | | | commit 2514157dad708883a35532dbdff847984c618a60
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Jul 18 23:15:49 2011 +0200
| | | | | 
| | | | |     move data types back to library
| | | | | 
| | | | | M	examples/undocumented/python_modular/library_fisher2x3_modular.py
| | | | | M	src/interfaces/modular/Library.i
| | | | | M	src/interfaces/modular/Library_includes.i
| | | | | M	src/interfaces/modular/SGBase.i
| | | | | M	src/shogun/classifier/svm/SGDQN.cpp
| | | | | M	src/shogun/io/SerializableAsciiFile.cpp
| | | | | M	src/shogun/io/SerializableAsciiReader00.cpp
| | | | | M	src/shogun/io/SerializableHdf5File.cpp
| | | | | M	src/shogun/io/SerializableHdf5Reader00.cpp
| | | | | M	src/shogun/io/SerializableJsonFile.cpp
| | | | | M	src/shogun/io/SerializableJsonReader00.cpp
| | | | | M	src/shogun/io/SerializableXmlFile.cpp
| | | | | M	src/shogun/io/SerializableXmlReader00.cpp
| | | | |      
* | | | | commit e70754fdb1a5cc9abc5ef39825e6954e5f472a19
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Jul 18 22:56:49 2011 +0200
| | | | | 
| | | | |     split up modular Library interface into Library, Mathematics and IO
| | | | | 
| | | | | M	examples/undocumented/python_modular/classifier_larank_modular.py
| | | | | M	examples/undocumented/python_modular/classifier_liblinear_modular.py
| | | | | M	examples/undocumented/python_modular/clustering_kmeans_modular.py
| | | | | M	examples/undocumented/python_modular/features_io_modular.py
| | | | | M	examples/undocumented/python_modular/features_string_file_modular.py
| | | | | M	examples/undocumented/python_modular/features_string_hashed_wd_modular.py
| | | | | M	examples/undocumented/python_modular/kernel_io_modular.py
| | | | | M	examples/undocumented/python_modular/serialization_complex_example.py
| | | | | M	examples/undocumented/python_modular/serialization_svmlight_modular.py
| | | | | A	src/interfaces/modular/IO.doxy
| | | | | A	src/interfaces/modular/IO.i
| | | | | A	src/interfaces/modular/IO_includes.i
| | | | | M	src/interfaces/modular/Library.i
| | | | | M	src/interfaces/modular/Library_includes.i
| | | | | A	src/interfaces/modular/Mathematics.doxy
| | | | | A	src/interfaces/modular/Mathematics.i
| | | | | A	src/interfaces/modular/Mathematics_includes.i
| | | | |      
* | | | | commit 85442d2d49003aff902975d2d5fe9925ebd92864
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Jul 18 22:28:55 2011 +0200
| | | | | 
| | | | |     don't try to remove shogun on distclean
| | | | | 
| | | | | M	src/Makefile
| | | | |      
* | | | | commit 65694368b5c7fac9c61de6d7cdc688fc2afa9f1c
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Jul 18 22:24:56 2011 +0200
| | | | | 
| | | | |     split up lib/ into io/ lib/ mathematics/ for clarity
| | | | | 
| | | | | M	src/README.developer
| | | | | M	src/interfaces/cmdline_static/CmdLineInterface.cpp
| | | | | M	src/interfaces/csharp_modular/sg_print_functions.cpp
| | | | | M	src/interfaces/java_modular/sg_print_functions.cpp
| | | | | M	src/interfaces/lua_modular/sg_print_functions.cpp
| | | | | M	src/interfaces/modular/Library.i
| | | | | M	src/interfaces/modular/Library_includes.i
| | | | | M	src/interfaces/modular/SGBase.i
| | | | | M	src/interfaces/octave_modular/sg_print_functions.cpp
| | | | | M	src/interfaces/octave_static/OctaveInterface.cpp
| | | | | M	src/interfaces/python_modular/sg_print_functions.cpp
| | | | | M	src/interfaces/python_static/PythonInterface.cpp
| | | | | M	src/interfaces/r_static/RInterface.cpp
| | | | | M	src/interfaces/ruby_modular/sg_print_functions.cpp
| | | | | M	src/shogun/base/DynArray.h
| | | | | M	src/shogun/base/Parallel.h
| | | | | M	src/shogun/base/Parameter.h
| | | | | M	src/shogun/base/SGObject.cpp
| | | | | M	src/shogun/base/SGObject.h
| | | | | M	src/shogun/base/Version.h
| | | | | M	src/shogun/base/init.cpp
| | | | | M	src/shogun/classifier/AveragedPerceptron.cpp
| | | | | M	src/shogun/classifier/GaussianNaiveBayes.cpp
| | | | | M	src/shogun/classifier/KNN.cpp
| | | | | M	src/shogun/classifier/KNN.h
| | | | | M	src/shogun/classifier/KernelPerceptron.cpp
| | | | | M	src/shogun/classifier/LDA.cpp
| | | | | M	src/shogun/classifier/LPBoost.cpp
| | | | | M	src/shogun/classifier/LPM.cpp
| | | | | M	src/shogun/classifier/Perceptron.cpp
| | | | | M	src/shogun/classifier/PluginEstimate.cpp
| | | | | M	src/shogun/classifier/SubGradientLPM.cpp
| | | | | M	src/shogun/classifier/SubGradientLPM.h
| | | | | D	src/shogun/classifier/__init__.py
| | | | | M	src/shogun/classifier/mkl/MKLMultiClass.cpp
| | | | | M	src/shogun/classifier/svm/CPLEXSVM.cpp
| | | | | M	src/shogun/classifier/svm/DomainAdaptationSVM.cpp
| | | | | M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | | | | M	src/shogun/classifier/svm/GMNPLib.cpp
| | | | | M	src/shogun/classifier/svm/GMNPLib.h
| | | | | M	src/shogun/classifier/svm/GMNPSVM.cpp
| | | | | M	src/shogun/classifier/svm/GNPPLib.cpp
| | | | | M	src/shogun/classifier/svm/GNPPLib.h
| | | | | M	src/shogun/classifier/svm/GNPPSVM.cpp
| | | | | M	src/shogun/classifier/svm/GPBTSVM.cpp
| | | | | M	src/shogun/classifier/svm/LaRank.cpp
| | | | | M	src/shogun/classifier/svm/LaRank.h
| | | | | M	src/shogun/classifier/svm/LibLinear.cpp
| | | | | M	src/shogun/classifier/svm/LibSVM.cpp
| | | | | M	src/shogun/classifier/svm/LibSVMMultiClass.cpp
| | | | | M	src/shogun/classifier/svm/LibSVMOneClass.cpp
| | | | | M	src/shogun/classifier/svm/MPDSVM.cpp
| | | | | M	src/shogun/classifier/svm/MultiClassSVM.cpp
| | | | | M	src/shogun/classifier/svm/QPBSVMLib.cpp
| | | | | M	src/shogun/classifier/svm/QPBSVMLib.h
| | | | | M	src/shogun/classifier/svm/SGDQN.cpp
| | | | | M	src/shogun/classifier/svm/SVM.cpp
| | | | | M	src/shogun/classifier/svm/SVMLight.cpp
| | | | | M	src/shogun/classifier/svm/SVMLight.h
| | | | | M	src/shogun/classifier/svm/SVMLightOneClass.cpp
| | | | | M	src/shogun/classifier/svm/SVMLin.cpp
| | | | | M	src/shogun/classifier/svm/SVMOcas.cpp
| | | | | M	src/shogun/classifier/svm/SVM_libsvm.cpp
| | | | | M	src/shogun/classifier/svm/SVM_linear.cpp
| | | | | M	src/shogun/classifier/svm/ScatterSVM.cpp
| | | | | M	src/shogun/classifier/svm/SubGradientSVM.cpp
| | | | | M	src/shogun/classifier/svm/Tron.cpp
| | | | | M	src/shogun/classifier/svm/WDSVMOcas.cpp
| | | | | D	src/shogun/classifier/svm/__init__.py
| | | | | M	src/shogun/classifier/svm/gpdtsolve.cpp
| | | | | M	src/shogun/classifier/svm/gpm.cpp
| | | | | M	src/shogun/classifier/svm/libocas_common.h
| | | | | M	src/shogun/classifier/svm/pr_loqo.cpp
| | | | | M	src/shogun/classifier/svm/ssl.cpp
| | | | | M	src/shogun/clustering/GMM.cpp
| | | | | M	src/shogun/clustering/Hierarchical.cpp
| | | | | M	src/shogun/clustering/Hierarchical.h
| | | | | M	src/shogun/clustering/KMeans.cpp
| | | | | M	src/shogun/clustering/KMeans.h
| | | | | M	src/shogun/distance/AttenuatedEuclidianDistance.cpp
| | | | | M	src/shogun/distance/BrayCurtisDistance.cpp
| | | | | M	src/shogun/distance/CanberraMetric.cpp
| | | | | M	src/shogun/distance/CanberraWordDistance.cpp
| | | | | M	src/shogun/distance/ChebyshewMetric.cpp
| | | | | M	src/shogun/distance/ChiSquareDistance.cpp
| | | | | M	src/shogun/distance/CosineDistance.cpp
| | | | | M	src/shogun/distance/CustomDistance.cpp
| | | | | M	src/shogun/distance/CustomDistance.h
| | | | | M	src/shogun/distance/Distance.cpp
| | | | | M	src/shogun/distance/Distance.h
| | | | | M	src/shogun/distance/EuclidianDistance.cpp
| | | | | M	src/shogun/distance/GeodesicMetric.cpp
| | | | | M	src/shogun/distance/HammingWordDistance.cpp
| | | | | M	src/shogun/distance/JensenMetric.cpp
| | | | | M	src/shogun/distance/KernelDistance.cpp
| | | | | M	src/shogun/distance/ManhattanMetric.cpp
| | | | | M	src/shogun/distance/ManhattanWordDistance.cpp
| | | | | M	src/shogun/distance/MinkowskiMetric.cpp
| | | | | M	src/shogun/distance/SimpleDistance.h
| | | | | M	src/shogun/distance/SparseEuclidianDistance.cpp
| | | | | M	src/shogun/distance/TanimotoDistance.cpp
| | | | | M	src/shogun/distributions/Distribution.cpp
| | | | | M	src/shogun/distributions/Distribution.h
| | | | | M	src/shogun/distributions/GHMM.h
| | | | | M	src/shogun/distributions/Gaussian.cpp
| | | | | M	src/shogun/distributions/Gaussian.h
| | | | | M	src/shogun/distributions/HMM.cpp
| | | | | M	src/shogun/distributions/HMM.h
| | | | | M	src/shogun/distributions/Histogram.cpp
| | | | | M	src/shogun/distributions/LinearHMM.cpp
| | | | | M	src/shogun/distributions/PositionalPWM.cpp
| | | | | M	src/shogun/distributions/PositionalPWM.h
| | | | | M	src/shogun/evaluation/ContingencyTableEvaluation.h
| | | | | M	src/shogun/evaluation/MeanSquaredError.cpp
| | | | | M	src/shogun/evaluation/MulticlassAccuracy.cpp
| | | | | M	src/shogun/evaluation/PRCEvaluation.cpp
| | | | | M	src/shogun/evaluation/ROCEvaluation.cpp
| | | | | M	src/shogun/features/Alphabet.cpp
| | | | | M	src/shogun/features/Alphabet.h
| | | | | M	src/shogun/features/CombinedDotFeatures.cpp
| | | | | M	src/shogun/features/CombinedFeatures.cpp
| | | | | M	src/shogun/features/DotFeatures.cpp
| | | | | M	src/shogun/features/DotFeatures.h
| | | | | M	src/shogun/features/ExplicitSpecFeatures.cpp
| | | | | M	src/shogun/features/ExplicitSpecFeatures.h
| | | | | M	src/shogun/features/FKFeatures.cpp
| | | | | M	src/shogun/features/Features.cpp
| | | | | M	src/shogun/features/Features.h
| | | | | M	src/shogun/features/HashedWDFeatures.cpp
| | | | | M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| | | | | M	src/shogun/features/ImplicitWeightedSpecFeatures.cpp
| | | | | M	src/shogun/features/ImplicitWeightedSpecFeatures.h
| | | | | M	src/shogun/features/Labels.cpp
| | | | | M	src/shogun/features/Labels.h
| | | | | M	src/shogun/features/RealFileFeatures.cpp
| | | | | M	src/shogun/features/SNPFeatures.cpp
| | | | | M	src/shogun/features/SimpleFeatures.h
| | | | | M	src/shogun/features/SparseFeatures.h
| | | | | M	src/shogun/features/StreamingDotFeatures.h
| | | | | M	src/shogun/features/StreamingFeatures.h
| | | | | M	src/shogun/features/StreamingSimpleFeatures.h
| | | | | M	src/shogun/features/StreamingSparseFeatures.h
| | | | | M	src/shogun/features/StreamingStringFeatures.h
| | | | | M	src/shogun/features/StringFeatures.h
| | | | | M	src/shogun/features/StringFileFeatures.h
| | | | | M	src/shogun/features/Subset.cpp
| | | | | M	src/shogun/features/TOPFeatures.cpp
| | | | | M	src/shogun/features/WDFeatures.cpp
| | | | | D	src/shogun/features/__init__.py
| | | | | A	src/shogun/io/AsciiFile.cpp
| | | | | A	src/shogun/io/AsciiFile.h
| | | | | A	src/shogun/io/BinaryFile.cpp
| | | | | A	src/shogun/io/BinaryFile.h
| | | | | A	src/shogun/io/BinaryStream.h
| | | | | A	src/shogun/io/File.cpp
| | | | | A	src/shogun/io/File.h
| | | | | A	src/shogun/io/HDF5File.cpp
| | | | | A	src/shogun/io/HDF5File.h
| | | | | A	src/shogun/io/IOBuffer.cpp
| | | | | A	src/shogun/io/IOBuffer.h
| | | | | A	src/shogun/io/InputParser.h
| | | | | A	src/shogun/io/LibSVMFile.h
| | | | | A	src/shogun/io/MemoryMappedFile.h
| | | | | A	src/shogun/io/ParseBuffer.h
| | | | | A	src/shogun/io/SerializableAsciiFile.cpp
| | | | | A	src/shogun/io/SerializableAsciiFile.h
| | | | | A	src/shogun/io/SerializableAsciiReader00.cpp
| | | | | A	src/shogun/io/SerializableAsciiReader00.h
| | | | | A	src/shogun/io/SerializableFile.cpp
| | | | | A	src/shogun/io/SerializableFile.h
| | | | | A	src/shogun/io/SerializableHdf5File.cpp
| | | | | A	src/shogun/io/SerializableHdf5File.h
| | | | | A	src/shogun/io/SerializableHdf5Reader00.cpp
| | | | | A	src/shogun/io/SerializableHdf5Reader00.h
| | | | | A	src/shogun/io/SerializableJsonFile.cpp
| | | | | A	src/shogun/io/SerializableJsonFile.h
| | | | | A	src/shogun/io/SerializableJsonReader00.cpp
| | | | | A	src/shogun/io/SerializableJsonReader00.h
| | | | | A	src/shogun/io/SerializableXmlFile.cpp
| | | | | A	src/shogun/io/SerializableXmlFile.h
| | | | | A	src/shogun/io/SerializableXmlReader00.cpp
| | | | | A	src/shogun/io/SerializableXmlReader00.h
| | | | | A	src/shogun/io/SimpleFile.h
| | | | | A	src/shogun/io/StreamingAsciiFile.cpp
| | | | | A	src/shogun/io/StreamingAsciiFile.h
| | | | | A	src/shogun/io/StreamingFile.cpp
| | | | | A	src/shogun/io/StreamingFile.h
| | | | | A	src/shogun/io/StreamingFileFromFeatures.cpp
| | | | | A	src/shogun/io/StreamingFileFromFeatures.h
| | | | | A	src/shogun/io/StreamingFileFromSimpleFeatures.h
| | | | | A	src/shogun/io/StreamingFileFromSparseFeatures.h
| | | | | A	src/shogun/io/StreamingFileFromStringFeatures.h
| | | | | A	src/shogun/io/io.cpp
| | | | | A	src/shogun/io/io.h
| | | | | M	src/shogun/kernel/ANOVAKernel.cpp
| | | | | M	src/shogun/kernel/AUCKernel.cpp
| | | | | M	src/shogun/kernel/BesselKernel.cpp
| | | | | M	src/shogun/kernel/CauchyKernel.cpp
| | | | | M	src/shogun/kernel/Chi2Kernel.cpp
| | | | | M	src/shogun/kernel/CircularKernel.cpp
| | | | | M	src/shogun/kernel/CombinedKernel.cpp
| | | | | M	src/shogun/kernel/CombinedKernel.h
| | | | | M	src/shogun/kernel/CommUlongStringKernel.cpp
| | | | | M	src/shogun/kernel/CommUlongStringKernel.h
| | | | | M	src/shogun/kernel/CommWordStringKernel.cpp
| | | | | M	src/shogun/kernel/CommWordStringKernel.h
| | | | | M	src/shogun/kernel/ConstKernel.cpp
| | | | | M	src/shogun/kernel/ConstKernel.h
| | | | | M	src/shogun/kernel/CustomKernel.cpp
| | | | | M	src/shogun/kernel/CustomKernel.h
| | | | | M	src/shogun/kernel/DiagKernel.cpp
| | | | | M	src/shogun/kernel/DistanceKernel.cpp
| | | | | M	src/shogun/kernel/DotKernel.h
| | | | | M	src/shogun/kernel/ExponentialKernel.cpp
| | | | | M	src/shogun/kernel/FixedDegreeStringKernel.cpp
| | | | | M	src/shogun/kernel/GaussianKernel.cpp
| | | | | M	src/shogun/kernel/GaussianMatchStringKernel.cpp
| | | | | M	src/shogun/kernel/GaussianShiftKernel.cpp
| | | | | M	src/shogun/kernel/GaussianShortRealKernel.cpp
| | | | | M	src/shogun/kernel/HistogramIntersectionKernel.cpp
| | | | | M	src/shogun/kernel/HistogramWordStringKernel.cpp
| | | | | M	src/shogun/kernel/InverseMultiQuadricKernel.cpp
| | | | | M	src/shogun/kernel/Kernel.cpp
| | | | | M	src/shogun/kernel/Kernel.h
| | | | | M	src/shogun/kernel/LinearKernel.cpp
| | | | | M	src/shogun/kernel/LinearStringKernel.cpp
| | | | | M	src/shogun/kernel/LocalityImprovedStringKernel.cpp
| | | | | M	src/shogun/kernel/LogKernel.cpp
| | | | | M	src/shogun/kernel/MatchWordStringKernel.cpp
| | | | | M	src/shogun/kernel/MultiquadricKernel.cpp
| | | | | M	src/shogun/kernel/PolyKernel.cpp
| | | | | M	src/shogun/kernel/PolyMatchStringKernel.cpp
| | | | | M	src/shogun/kernel/PolyMatchWordStringKernel.cpp
| | | | | M	src/shogun/kernel/PowerKernel.cpp
| | | | | M	src/shogun/kernel/PyramidChi2.cpp
| | | | | M	src/shogun/kernel/RationalQuadraticKernel.cpp
| | | | | M	src/shogun/kernel/RegulatoryModulesStringKernel.cpp
| | | | | M	src/shogun/kernel/SNPStringKernel.cpp
| | | | | M	src/shogun/kernel/SalzbergWordStringKernel.cpp
| | | | | M	src/shogun/kernel/ScatterKernelNormalizer.h
| | | | | M	src/shogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| | | | | M	src/shogun/kernel/SparseSpatialSampleStringKernel.cpp
| | | | | M	src/shogun/kernel/SpectrumMismatchRBFKernel.cpp
| | | | | M	src/shogun/kernel/SpectrumRBFKernel.cpp
| | | | | M	src/shogun/kernel/SphericalKernel.cpp
| | | | | M	src/shogun/kernel/SplineKernel.cpp
| | | | | M	src/shogun/kernel/TStudentKernel.cpp
| | | | | M	src/shogun/kernel/TensorProductPairKernel.cpp
| | | | | M	src/shogun/kernel/WaveKernel.cpp
| | | | | M	src/shogun/kernel/WeightedCommWordStringKernel.cpp
| | | | | M	src/shogun/kernel/WeightedCommWordStringKernel.h
| | | | | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | | | | M	src/shogun/kernel/WeightedDegreeRBFKernel.cpp
| | | | | M	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | | | | D	src/shogun/kernel/__init__.py
| | | | | D	src/shogun/lib/AsciiFile.cpp
| | | | | D	src/shogun/lib/AsciiFile.h
| | | | | D	src/shogun/lib/BinaryFile.cpp
| | | | | D	src/shogun/lib/BinaryFile.h
| | | | | D	src/shogun/lib/BinaryStream.h
| | | | | M	src/shogun/lib/BitString.h
| | | | | M	src/shogun/lib/Cache.h
| | | | | M	src/shogun/lib/Compressor.cpp
| | | | | M	src/shogun/lib/Compressor.h
| | | | | D	src/shogun/lib/Cplex.cpp
| | | | | D	src/shogun/lib/Cplex.h
| | | | | M	src/shogun/lib/DynInt.h
| | | | | D	src/shogun/lib/File.cpp
| | | | | D	src/shogun/lib/File.h
| | | | | D	src/shogun/lib/HDF5File.cpp
| | | | | D	src/shogun/lib/HDF5File.h
| | | | | D	src/shogun/lib/IOBuffer.cpp
| | | | | D	src/shogun/lib/IOBuffer.h
| | | | | D	src/shogun/lib/InputParser.h
| | | | | D	src/shogun/lib/LibSVMFile.h
| | | | | D	src/shogun/lib/Loss.h
| | | | | D	src/shogun/lib/Mathematics.cpp
| | | | | D	src/shogun/lib/Mathematics.h
| | | | | D	src/shogun/lib/MemoryMappedFile.h
| | | | | D	src/shogun/lib/ParseBuffer.h
| | | | | D	src/shogun/lib/SerializableAsciiFile.cpp
| | | | | D	src/shogun/lib/SerializableAsciiFile.h
| | | | | D	src/shogun/lib/SerializableAsciiReader00.cpp
| | | | | D	src/shogun/lib/SerializableAsciiReader00.h
| | | | | D	src/shogun/lib/SerializableFile.cpp
| | | | | D	src/shogun/lib/SerializableFile.h
| | | | | D	src/shogun/lib/SerializableHdf5File.cpp
| | | | | D	src/shogun/lib/SerializableHdf5File.h
| | | | | D	src/shogun/lib/SerializableHdf5Reader00.cpp
| | | | | D	src/shogun/lib/SerializableHdf5Reader00.h
| | | | | D	src/shogun/lib/SerializableJsonFile.cpp
| | | | | D	src/shogun/lib/SerializableJsonFile.h
| | | | | D	src/shogun/lib/SerializableJsonReader00.cpp
| | | | | D	src/shogun/lib/SerializableJsonReader00.h
| | | | | D	src/shogun/lib/SerializableXmlFile.cpp
| | | | | D	src/shogun/lib/SerializableXmlFile.h
| | | | | D	src/shogun/lib/SerializableXmlReader00.cpp
| | | | | D	src/shogun/lib/SerializableXmlReader00.h
| | | | | M	src/shogun/lib/Set.h
| | | | | M	src/shogun/lib/Signal.cpp
| | | | | D	src/shogun/lib/SimpleFile.h
| | | | | D	src/shogun/lib/StreamingAsciiFile.cpp
| | | | | D	src/shogun/lib/StreamingAsciiFile.h
| | | | | D	src/shogun/lib/StreamingFile.cpp
| | | | | D	src/shogun/lib/StreamingFile.h
| | | | | D	src/shogun/lib/StreamingFileFromFeatures.cpp
| | | | | D	src/shogun/lib/StreamingFileFromFeatures.h
| | | | | D	src/shogun/lib/StreamingFileFromSimpleFeatures.h
| | | | | D	src/shogun/lib/StreamingFileFromSparseFeatures.h
| | | | | D	src/shogun/lib/StreamingFileFromStringFeatures.h
| | | | | M	src/shogun/lib/Time.cpp
| | | | | M	src/shogun/lib/Time.h
| | | | | M	src/shogun/lib/Trie.cpp
| | | | | M	src/shogun/lib/Trie.h
| | | | | D	src/shogun/lib/__init__.py
| | | | | D	src/shogun/lib/arpack.cpp
| | | | | D	src/shogun/lib/arpack.h
| | | | | D	src/shogun/lib/io.cpp
| | | | | D	src/shogun/lib/io.h
| | | | | D	src/shogun/lib/lapack.cpp
| | | | | D	src/shogun/lib/lapack.h
| | | | | M	src/shogun/machine/KernelMachine.h
| | | | | M	src/shogun/machine/Machine.h
| | | | | A	src/shogun/mathematics/Cplex.cpp
| | | | | A	src/shogun/mathematics/Cplex.h
| | | | | A	src/shogun/mathematics/Loss.h
| | | | | A	src/shogun/mathematics/Math.cpp
| | | | | A	src/shogun/mathematics/Math.h
| | | | | A	src/shogun/mathematics/arpack.cpp
| | | | | A	src/shogun/mathematics/arpack.h
| | | | | A	src/shogun/mathematics/lapack.cpp
| | | | | A	src/shogun/mathematics/lapack.h
| | | | | M	src/shogun/preprocessor/ClassicMDS.cpp
| | | | | M	src/shogun/preprocessor/Isomap.h
| | | | | M	src/shogun/preprocessor/KernelPCACut.cpp
| | | | | M	src/shogun/preprocessor/LandmarkMDS.cpp
| | | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | | | M	src/shogun/preprocessor/LogPlusOne.cpp
| | | | | M	src/shogun/preprocessor/NormOne.cpp
| | | | | M	src/shogun/preprocessor/PCA.cpp
| | | | | M	src/shogun/preprocessor/PCA.h
| | | | | M	src/shogun/preprocessor/Preprocessor.cpp
| | | | | M	src/shogun/preprocessor/PruneVarSubMean.cpp
| | | | | M	src/shogun/preprocessor/RandomFourierGaussPreproc.h
| | | | | M	src/shogun/preprocessor/SortUlongString.cpp
| | | | | M	src/shogun/preprocessor/SortWordString.cpp
| | | | | M	src/shogun/regression/KRR.cpp
| | | | | M	src/shogun/regression/svr/LibSVR.cpp
| | | | | M	src/shogun/regression/svr/SVRLight.cpp
| | | | | M	src/shogun/structure/DynProg.cpp
| | | | | M	src/shogun/structure/DynProg.h
| | | | | M	src/shogun/structure/IntronList.cpp
| | | | | M	src/shogun/structure/Plif.cpp
| | | | | M	src/shogun/structure/Plif.h
| | | | | M	src/shogun/structure/PlifArray.cpp
| | | | | M	src/shogun/structure/PlifArray.h
| | | | | M	src/shogun/structure/PlifBase.h
| | | | | M	src/shogun/structure/SegmentLoss.cpp
| | | | | M	src/shogun/ui/GUIClassifier.cpp
| | | | | M	src/shogun/ui/GUIDistance.cpp
| | | | | M	src/shogun/ui/GUIFeatures.cpp
| | | | | M	src/shogun/ui/GUIKernel.cpp
| | | | | M	src/shogun/ui/GUILabels.cpp
| | | | | M	src/shogun/ui/GUIMath.cpp
| | | | | M	src/shogun/ui/GUIPluginEstimate.cpp
| | | | | M	src/shogun/ui/GUIPreprocessor.cpp
| | | | | M	src/shogun/ui/GUISignals.cpp.orig
| | | | | M	src/shogun/ui/GUIStructure.cpp
| | | | | M	src/shogun/ui/SGInterface.cpp
| | | | |      
* | | | | commit 245cf3e996c2c93397f8b053da3658bdf11b6acb
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Jul 18 21:30:14 2011 +0200
| | | | | 
| | | | |     remove sed -i operation on shogun dir - no longer necessary with new
| | | | |     directory layout
| | | | | 
| | | | | M	src/Makefile.template
| | | | |      
* | | | | commit bf5a3a340c0cb77adf77aa47cd6ac1ec06d0d543
| |_|_|/  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Mon Jul 18 21:29:44 2011 +0200
| | | |   
| | | |       remove shogun from ignored dirs since that is now the main shogun aka
| | | |       libshogun dir
| | | |   
| | | |   M	.gitignore
| | | |       
* | | |   commit d67fba135096bc7e0781a5df2bb736f73435e586
|\ \ \ \  Merge: 8e49447 9541603
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Jul 18 08:08:49 2011 -0700
| | | | | 
| | | | |     Merge pull request #208 from karlnapf/master
| | | | |     
| | | | |     Modelselection ->ModelSelection
| | | | |      
| * | | | commit 95416034bcaeb2a73b6463c36c4f3a06efa5e2e6
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jul 18 17:01:17 2011 +0200
| | | | | 
| | | | |     renamed Modelselection to ModelSelection
| | | | | 
| | | | | M	examples/undocumented/python_modular/modelselection_grid_search_simple_modular.py
| | | | | M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| | | | | A	src/interfaces/modular/ModelSelection.doxy
| | | | | A	src/interfaces/modular/ModelSelection.i
| | | | | A	src/interfaces/modular/ModelSelection_includes.i
| | | | | D	src/interfaces/modular/Modelselection.doxy
| | | | | D	src/interfaces/modular/Modelselection.i
| | | | | D	src/interfaces/modular/Modelselection_includes.i
| | | | |      
* | | | | commit 8e49447cacb89df18751bcdd772cdce277ad4d8b
|/ / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Mon Jul 18 16:59:17 2011 +0200
| | | |   
| | | |       test whether ant is installed (and disable java if not available)
| | | |   
| | | |   M	src/configure
| | | |     
* | | | commit e36498950e9d509792cb57ae543187ae728717bf
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jul 18 15:38:32 2011 +0200
| | | | 
| | | |     change include paths to be all relative to /src, e.g.
| | | |     <shogun/features/SimpleFeatures.i>
| | | | 
| | | | M	src/shogun/base/DynArray.h
| | | | M	src/shogun/base/Parallel.cpp
| | | | M	src/shogun/base/Parallel.h
| | | | M	src/shogun/base/Parameter.cpp
| | | | M	src/shogun/base/Parameter.h
| | | | M	src/shogun/base/SGObject.cpp
| | | | M	src/shogun/base/SGObject.h
| | | | M	src/shogun/base/Version.cpp
| | | | M	src/shogun/base/Version.h
| | | | M	src/shogun/base/class_list.h
| | | | M	src/shogun/base/init.cpp
| | | | M	src/shogun/classifier/AveragedPerceptron.cpp
| | | | M	src/shogun/classifier/AveragedPerceptron.h
| | | | M	src/shogun/classifier/GaussianNaiveBayes.cpp
| | | | M	src/shogun/classifier/GaussianNaiveBayes.h
| | | | M	src/shogun/classifier/KNN.cpp
| | | | M	src/shogun/classifier/KNN.h
| | | | M	src/shogun/classifier/KernelPerceptron.cpp
| | | | M	src/shogun/classifier/KernelPerceptron.h
| | | | M	src/shogun/classifier/LDA.cpp
| | | | M	src/shogun/classifier/LDA.h
| | | | M	src/shogun/classifier/LPBoost.cpp
| | | | M	src/shogun/classifier/LPBoost.h
| | | | M	src/shogun/classifier/LPM.cpp
| | | | M	src/shogun/classifier/LPM.h
| | | | M	src/shogun/classifier/Perceptron.cpp
| | | | M	src/shogun/classifier/Perceptron.h
| | | | M	src/shogun/classifier/PluginEstimate.cpp
| | | | M	src/shogun/classifier/PluginEstimate.h
| | | | M	src/shogun/classifier/SubGradientLPM.cpp
| | | | M	src/shogun/classifier/SubGradientLPM.h
| | | | M	src/shogun/classifier/mkl/MKL.cpp
| | | | M	src/shogun/classifier/mkl/MKL.h
| | | | M	src/shogun/classifier/mkl/MKLClassification.cpp
| | | | M	src/shogun/classifier/mkl/MKLClassification.h
| | | | M	src/shogun/classifier/mkl/MKLMultiClass.cpp
| | | | M	src/shogun/classifier/mkl/MKLMultiClass.h
| | | | M	src/shogun/classifier/mkl/MKLMultiClassGLPK.cpp
| | | | M	src/shogun/classifier/mkl/MKLMultiClassGLPK.h
| | | | M	src/shogun/classifier/mkl/MKLMultiClassGradient.cpp
| | | | M	src/shogun/classifier/mkl/MKLMultiClassGradient.h
| | | | M	src/shogun/classifier/mkl/MKLMultiClassOptimizationBase.cpp
| | | | M	src/shogun/classifier/mkl/MKLMultiClassOptimizationBase.h
| | | | M	src/shogun/classifier/mkl/MKLOneClass.cpp
| | | | M	src/shogun/classifier/mkl/MKLOneClass.h
| | | | M	src/shogun/classifier/svm/CPLEXSVM.cpp
| | | | M	src/shogun/classifier/svm/CPLEXSVM.h
| | | | M	src/shogun/classifier/svm/DomainAdaptationSVM.cpp
| | | | M	src/shogun/classifier/svm/DomainAdaptationSVM.h
| | | | M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | | | M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.h
| | | | M	src/shogun/classifier/svm/GMNPLib.cpp
| | | | M	src/shogun/classifier/svm/GMNPLib.h
| | | | M	src/shogun/classifier/svm/GMNPSVM.cpp
| | | | M	src/shogun/classifier/svm/GMNPSVM.h
| | | | M	src/shogun/classifier/svm/GNPPLib.cpp
| | | | M	src/shogun/classifier/svm/GNPPLib.h
| | | | M	src/shogun/classifier/svm/GNPPSVM.cpp
| | | | M	src/shogun/classifier/svm/GNPPSVM.h
| | | | M	src/shogun/classifier/svm/GPBTSVM.cpp
| | | | M	src/shogun/classifier/svm/GPBTSVM.h
| | | | M	src/shogun/classifier/svm/LaRank.cpp
| | | | M	src/shogun/classifier/svm/LaRank.h
| | | | M	src/shogun/classifier/svm/LibLinear.cpp
| | | | M	src/shogun/classifier/svm/LibLinear.h
| | | | M	src/shogun/classifier/svm/LibSVM.cpp
| | | | M	src/shogun/classifier/svm/LibSVM.h
| | | | M	src/shogun/classifier/svm/LibSVMMultiClass.cpp
| | | | M	src/shogun/classifier/svm/LibSVMMultiClass.h
| | | | M	src/shogun/classifier/svm/LibSVMOneClass.cpp
| | | | M	src/shogun/classifier/svm/LibSVMOneClass.h
| | | | M	src/shogun/classifier/svm/MPDSVM.cpp
| | | | M	src/shogun/classifier/svm/MPDSVM.h
| | | | M	src/shogun/classifier/svm/MultiClassSVM.cpp
| | | | M	src/shogun/classifier/svm/MultiClassSVM.h
| | | | M	src/shogun/classifier/svm/OnlineLibLinear.cpp
| | | | M	src/shogun/classifier/svm/OnlineLibLinear.h
| | | | M	src/shogun/classifier/svm/OnlineSVMSGD.cpp
| | | | M	src/shogun/classifier/svm/OnlineSVMSGD.h
| | | | M	src/shogun/classifier/svm/QPBSVMLib.cpp
| | | | M	src/shogun/classifier/svm/QPBSVMLib.h
| | | | M	src/shogun/classifier/svm/SGDQN.cpp
| | | | M	src/shogun/classifier/svm/SGDQN.h
| | | | M	src/shogun/classifier/svm/SVM.cpp
| | | | M	src/shogun/classifier/svm/SVM.h
| | | | M	src/shogun/classifier/svm/SVMLight.cpp
| | | | M	src/shogun/classifier/svm/SVMLight.h
| | | | M	src/shogun/classifier/svm/SVMLightOneClass.cpp
| | | | M	src/shogun/classifier/svm/SVMLightOneClass.h
| | | | M	src/shogun/classifier/svm/SVMLin.cpp
| | | | M	src/shogun/classifier/svm/SVMLin.h
| | | | M	src/shogun/classifier/svm/SVMOcas.cpp
| | | | M	src/shogun/classifier/svm/SVMOcas.h
| | | | M	src/shogun/classifier/svm/SVMSGD.cpp
| | | | M	src/shogun/classifier/svm/SVMSGD.h
| | | | M	src/shogun/classifier/svm/SVM_libsvm.cpp
| | | | M	src/shogun/classifier/svm/SVM_libsvm.h
| | | | M	src/shogun/classifier/svm/SVM_linear.cpp
| | | | M	src/shogun/classifier/svm/SVM_linear.h
| | | | M	src/shogun/classifier/svm/ScatterSVM.cpp
| | | | M	src/shogun/classifier/svm/ScatterSVM.h
| | | | M	src/shogun/classifier/svm/SubGradientSVM.cpp
| | | | M	src/shogun/classifier/svm/SubGradientSVM.h
| | | | M	src/shogun/classifier/svm/Tron.cpp
| | | | M	src/shogun/classifier/svm/Tron.h
| | | | M	src/shogun/classifier/svm/WDSVMOcas.cpp
| | | | M	src/shogun/classifier/svm/WDSVMOcas.h
| | | | M	src/shogun/classifier/svm/gpdt.cpp
| | | | M	src/shogun/classifier/svm/gpdt.h
| | | | M	src/shogun/classifier/svm/gpdtsolve.cpp
| | | | M	src/shogun/classifier/svm/gpdtsolve.h
| | | | M	src/shogun/classifier/svm/gpm.cpp
| | | | M	src/shogun/classifier/svm/gpm.h
| | | | M	src/shogun/classifier/svm/libocas.cpp
| | | | M	src/shogun/classifier/svm/libocas.h
| | | | M	src/shogun/classifier/svm/libocas_common.h
| | | | M	src/shogun/classifier/svm/libqp.h
| | | | M	src/shogun/classifier/svm/libqp_splx.cpp
| | | | M	src/shogun/classifier/svm/pr_loqo.cpp
| | | | M	src/shogun/classifier/svm/ssl.cpp
| | | | M	src/shogun/classifier/svm/ssl.h
| | | | M	src/shogun/clustering/GMM.cpp
| | | | M	src/shogun/clustering/GMM.h
| | | | M	src/shogun/clustering/Hierarchical.cpp
| | | | M	src/shogun/clustering/Hierarchical.h
| | | | M	src/shogun/clustering/KMeans.cpp
| | | | M	src/shogun/clustering/KMeans.h
| | | | M	src/shogun/distance/AttenuatedEuclidianDistance.cpp
| | | | M	src/shogun/distance/AttenuatedEuclidianDistance.h
| | | | M	src/shogun/distance/BrayCurtisDistance.cpp
| | | | M	src/shogun/distance/BrayCurtisDistance.h
| | | | M	src/shogun/distance/CanberraMetric.cpp
| | | | M	src/shogun/distance/CanberraMetric.h
| | | | M	src/shogun/distance/CanberraWordDistance.cpp
| | | | M	src/shogun/distance/CanberraWordDistance.h
| | | | M	src/shogun/distance/ChebyshewMetric.cpp
| | | | M	src/shogun/distance/ChebyshewMetric.h
| | | | M	src/shogun/distance/ChiSquareDistance.cpp
| | | | M	src/shogun/distance/ChiSquareDistance.h
| | | | M	src/shogun/distance/CosineDistance.cpp
| | | | M	src/shogun/distance/CosineDistance.h
| | | | M	src/shogun/distance/CustomDistance.cpp
| | | | M	src/shogun/distance/CustomDistance.h
| | | | M	src/shogun/distance/Distance.cpp
| | | | M	src/shogun/distance/Distance.h
| | | | M	src/shogun/distance/EuclidianDistance.cpp
| | | | M	src/shogun/distance/EuclidianDistance.h
| | | | M	src/shogun/distance/GeodesicMetric.cpp
| | | | M	src/shogun/distance/GeodesicMetric.h
| | | | M	src/shogun/distance/HammingWordDistance.cpp
| | | | M	src/shogun/distance/HammingWordDistance.h
| | | | M	src/shogun/distance/JensenMetric.cpp
| | | | M	src/shogun/distance/JensenMetric.h
| | | | M	src/shogun/distance/KernelDistance.cpp
| | | | M	src/shogun/distance/KernelDistance.h
| | | | M	src/shogun/distance/ManhattanMetric.cpp
| | | | M	src/shogun/distance/ManhattanMetric.h
| | | | M	src/shogun/distance/ManhattanWordDistance.cpp
| | | | M	src/shogun/distance/ManhattanWordDistance.h
| | | | M	src/shogun/distance/MinkowskiMetric.cpp
| | | | M	src/shogun/distance/MinkowskiMetric.h
| | | | M	src/shogun/distance/RealDistance.h
| | | | M	src/shogun/distance/SimpleDistance.h
| | | | M	src/shogun/distance/SparseDistance.h
| | | | M	src/shogun/distance/SparseEuclidianDistance.cpp
| | | | M	src/shogun/distance/SparseEuclidianDistance.h
| | | | M	src/shogun/distance/StringDistance.h
| | | | M	src/shogun/distance/TanimotoDistance.cpp
| | | | M	src/shogun/distance/TanimotoDistance.h
| | | | M	src/shogun/distributions/Distribution.cpp
| | | | M	src/shogun/distributions/Distribution.h
| | | | M	src/shogun/distributions/GHMM.cpp
| | | | M	src/shogun/distributions/GHMM.h
| | | | M	src/shogun/distributions/Gaussian.cpp
| | | | M	src/shogun/distributions/Gaussian.h
| | | | M	src/shogun/distributions/HMM.cpp
| | | | M	src/shogun/distributions/HMM.h
| | | | M	src/shogun/distributions/Histogram.cpp
| | | | M	src/shogun/distributions/Histogram.h
| | | | M	src/shogun/distributions/LinearHMM.cpp
| | | | M	src/shogun/distributions/LinearHMM.h
| | | | M	src/shogun/distributions/PositionalPWM.cpp
| | | | M	src/shogun/distributions/PositionalPWM.h
| | | | M	src/shogun/evaluation/BinaryClassEvaluation.h
| | | | M	src/shogun/evaluation/ContingencyTableEvaluation.cpp
| | | | M	src/shogun/evaluation/ContingencyTableEvaluation.h
| | | | M	src/shogun/evaluation/CrossValidation.cpp
| | | | M	src/shogun/evaluation/CrossValidation.h
| | | | M	src/shogun/evaluation/Evaluation.h
| | | | M	src/shogun/evaluation/MeanSquaredError.cpp
| | | | M	src/shogun/evaluation/MeanSquaredError.h
| | | | M	src/shogun/evaluation/MulticlassAccuracy.cpp
| | | | M	src/shogun/evaluation/MulticlassAccuracy.h
| | | | M	src/shogun/evaluation/PRCEvaluation.cpp
| | | | M	src/shogun/evaluation/PRCEvaluation.h
| | | | M	src/shogun/evaluation/ROCEvaluation.cpp
| | | | M	src/shogun/evaluation/ROCEvaluation.h
| | | | M	src/shogun/evaluation/SplittingStrategy.cpp
| | | | M	src/shogun/evaluation/SplittingStrategy.h
| | | | M	src/shogun/evaluation/StratifiedCrossValidationSplitting.cpp
| | | | M	src/shogun/evaluation/StratifiedCrossValidationSplitting.h
| | | | M	src/shogun/features/Alphabet.cpp
| | | | M	src/shogun/features/Alphabet.h
| | | | M	src/shogun/features/AttributeFeatures.cpp
| | | | M	src/shogun/features/AttributeFeatures.h
| | | | M	src/shogun/features/CombinedDotFeatures.cpp
| | | | M	src/shogun/features/CombinedDotFeatures.h
| | | | M	src/shogun/features/CombinedFeatures.cpp
| | | | M	src/shogun/features/CombinedFeatures.h
| | | | M	src/shogun/features/DotFeatures.cpp
| | | | M	src/shogun/features/DotFeatures.h
| | | | M	src/shogun/features/DummyFeatures.h
| | | | M	src/shogun/features/ExplicitSpecFeatures.cpp
| | | | M	src/shogun/features/ExplicitSpecFeatures.h
| | | | M	src/shogun/features/FKFeatures.cpp
| | | | M	src/shogun/features/FKFeatures.h
| | | | M	src/shogun/features/Features.cpp
| | | | M	src/shogun/features/Features.h
| | | | M	src/shogun/features/HashedWDFeatures.cpp
| | | | M	src/shogun/features/HashedWDFeatures.h
| | | | M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| | | | M	src/shogun/features/HashedWDFeaturesTransposed.h
| | | | M	src/shogun/features/ImplicitWeightedSpecFeatures.cpp
| | | | M	src/shogun/features/ImplicitWeightedSpecFeatures.h
| | | | M	src/shogun/features/LBPPyrDotFeatures.cpp
| | | | M	src/shogun/features/LBPPyrDotFeatures.h
| | | | M	src/shogun/features/Labels.cpp
| | | | M	src/shogun/features/Labels.h
| | | | M	src/shogun/features/PolyFeatures.cpp
| | | | M	src/shogun/features/PolyFeatures.h
| | | | M	src/shogun/features/RealFileFeatures.cpp
| | | | M	src/shogun/features/RealFileFeatures.h
| | | | M	src/shogun/features/SNPFeatures.cpp
| | | | M	src/shogun/features/SNPFeatures.h
| | | | M	src/shogun/features/SimpleFeatures.h
| | | | M	src/shogun/features/SparseFeatures.h
| | | | M	src/shogun/features/SparsePolyFeatures.cpp
| | | | M	src/shogun/features/SparsePolyFeatures.h
| | | | M	src/shogun/features/StreamingDotFeatures.h
| | | | M	src/shogun/features/StreamingFeatures.h
| | | | M	src/shogun/features/StreamingSimpleFeatures.h
| | | | M	src/shogun/features/StreamingSparseFeatures.h
| | | | M	src/shogun/features/StreamingStringFeatures.h
| | | | M	src/shogun/features/StringFeatures.h
| | | | M	src/shogun/features/StringFileFeatures.h
| | | | M	src/shogun/features/Subset.cpp
| | | | M	src/shogun/features/Subset.h
| | | | M	src/shogun/features/TOPFeatures.cpp
| | | | M	src/shogun/features/TOPFeatures.h
| | | | M	src/shogun/features/WDFeatures.cpp
| | | | M	src/shogun/features/WDFeatures.h
| | | | M	src/shogun/kernel/ANOVAKernel.cpp
| | | | M	src/shogun/kernel/ANOVAKernel.h
| | | | M	src/shogun/kernel/AUCKernel.cpp
| | | | M	src/shogun/kernel/AUCKernel.h
| | | | M	src/shogun/kernel/AvgDiagKernelNormalizer.h
| | | | M	src/shogun/kernel/BesselKernel.cpp
| | | | M	src/shogun/kernel/BesselKernel.h
| | | | M	src/shogun/kernel/CauchyKernel.cpp
| | | | M	src/shogun/kernel/CauchyKernel.h
| | | | M	src/shogun/kernel/Chi2Kernel.cpp
| | | | M	src/shogun/kernel/Chi2Kernel.h
| | | | M	src/shogun/kernel/CircularKernel.cpp
| | | | M	src/shogun/kernel/CircularKernel.h
| | | | M	src/shogun/kernel/CombinedKernel.cpp
| | | | M	src/shogun/kernel/CombinedKernel.h
| | | | M	src/shogun/kernel/CommUlongStringKernel.cpp
| | | | M	src/shogun/kernel/CommUlongStringKernel.h
| | | | M	src/shogun/kernel/CommWordStringKernel.cpp
| | | | M	src/shogun/kernel/CommWordStringKernel.h
| | | | M	src/shogun/kernel/ConstKernel.cpp
| | | | M	src/shogun/kernel/ConstKernel.h
| | | | M	src/shogun/kernel/CustomKernel.cpp
| | | | M	src/shogun/kernel/CustomKernel.h
| | | | M	src/shogun/kernel/DiagKernel.cpp
| | | | M	src/shogun/kernel/DiagKernel.h
| | | | M	src/shogun/kernel/DiceKernelNormalizer.h
| | | | M	src/shogun/kernel/DistanceKernel.cpp
| | | | M	src/shogun/kernel/DistanceKernel.h
| | | | M	src/shogun/kernel/DistantSegmentsKernel.cpp
| | | | M	src/shogun/kernel/DistantSegmentsKernel.h
| | | | M	src/shogun/kernel/DotKernel.h
| | | | M	src/shogun/kernel/ExponentialKernel.cpp
| | | | M	src/shogun/kernel/ExponentialKernel.h
| | | | M	src/shogun/kernel/FirstElementKernelNormalizer.h
| | | | M	src/shogun/kernel/FixedDegreeStringKernel.cpp
| | | | M	src/shogun/kernel/FixedDegreeStringKernel.h
| | | | M	src/shogun/kernel/GaussianKernel.cpp
| | | | M	src/shogun/kernel/GaussianKernel.h
| | | | M	src/shogun/kernel/GaussianMatchStringKernel.cpp
| | | | M	src/shogun/kernel/GaussianMatchStringKernel.h
| | | | M	src/shogun/kernel/GaussianShiftKernel.cpp
| | | | M	src/shogun/kernel/GaussianShiftKernel.h
| | | | M	src/shogun/kernel/GaussianShortRealKernel.cpp
| | | | M	src/shogun/kernel/GaussianShortRealKernel.h
| | | | M	src/shogun/kernel/HistogramIntersectionKernel.cpp
| | | | M	src/shogun/kernel/HistogramIntersectionKernel.h
| | | | M	src/shogun/kernel/HistogramWordStringKernel.cpp
| | | | M	src/shogun/kernel/HistogramWordStringKernel.h
| | | | M	src/shogun/kernel/IdentityKernelNormalizer.h
| | | | M	src/shogun/kernel/InverseMultiQuadricKernel.cpp
| | | | M	src/shogun/kernel/InverseMultiQuadricKernel.h
| | | | M	src/shogun/kernel/Kernel.cpp
| | | | M	src/shogun/kernel/Kernel.h
| | | | M	src/shogun/kernel/KernelNormalizer.h
| | | | M	src/shogun/kernel/LinearKernel.cpp
| | | | M	src/shogun/kernel/LinearKernel.h
| | | | M	src/shogun/kernel/LinearStringKernel.cpp
| | | | M	src/shogun/kernel/LinearStringKernel.h
| | | | M	src/shogun/kernel/LocalAlignmentStringKernel.cpp
| | | | M	src/shogun/kernel/LocalAlignmentStringKernel.h
| | | | M	src/shogun/kernel/LocalityImprovedStringKernel.cpp
| | | | M	src/shogun/kernel/LocalityImprovedStringKernel.h
| | | | M	src/shogun/kernel/LogKernel.cpp
| | | | M	src/shogun/kernel/LogKernel.h
| | | | M	src/shogun/kernel/MatchWordStringKernel.cpp
| | | | M	src/shogun/kernel/MatchWordStringKernel.h
| | | | M	src/shogun/kernel/MultiquadricKernel.cpp
| | | | M	src/shogun/kernel/MultiquadricKernel.h
| | | | M	src/shogun/kernel/MultitaskKernelMaskNormalizer.h
| | | | M	src/shogun/kernel/MultitaskKernelMaskPairNormalizer.h
| | | | M	src/shogun/kernel/MultitaskKernelMklNormalizer.h
| | | | M	src/shogun/kernel/MultitaskKernelNormalizer.h
| | | | M	src/shogun/kernel/MultitaskKernelPlifNormalizer.h
| | | | M	src/shogun/kernel/MultitaskKernelTreeNormalizer.h
| | | | M	src/shogun/kernel/OligoStringKernel.cpp
| | | | M	src/shogun/kernel/OligoStringKernel.h
| | | | M	src/shogun/kernel/PolyKernel.cpp
| | | | M	src/shogun/kernel/PolyKernel.h
| | | | M	src/shogun/kernel/PolyMatchStringKernel.cpp
| | | | M	src/shogun/kernel/PolyMatchStringKernel.h
| | | | M	src/shogun/kernel/PolyMatchWordStringKernel.cpp
| | | | M	src/shogun/kernel/PolyMatchWordStringKernel.h
| | | | M	src/shogun/kernel/PowerKernel.cpp
| | | | M	src/shogun/kernel/PowerKernel.h
| | | | M	src/shogun/kernel/PyramidChi2.cpp
| | | | M	src/shogun/kernel/PyramidChi2.h
| | | | M	src/shogun/kernel/RationalQuadraticKernel.cpp
| | | | M	src/shogun/kernel/RationalQuadraticKernel.h
| | | | M	src/shogun/kernel/RegulatoryModulesStringKernel.cpp
| | | | M	src/shogun/kernel/RegulatoryModulesStringKernel.h
| | | | M	src/shogun/kernel/RidgeKernelNormalizer.h
| | | | M	src/shogun/kernel/SNPStringKernel.cpp
| | | | M	src/shogun/kernel/SNPStringKernel.h
| | | | M	src/shogun/kernel/SalzbergWordStringKernel.cpp
| | | | M	src/shogun/kernel/SalzbergWordStringKernel.h
| | | | M	src/shogun/kernel/ScatterKernelNormalizer.h
| | | | M	src/shogun/kernel/SigmoidKernel.cpp
| | | | M	src/shogun/kernel/SigmoidKernel.h
| | | | M	src/shogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| | | | M	src/shogun/kernel/SimpleLocalityImprovedStringKernel.h
| | | | M	src/shogun/kernel/SparseKernel.h
| | | | M	src/shogun/kernel/SparseSpatialSampleStringKernel.cpp
| | | | M	src/shogun/kernel/SparseSpatialSampleStringKernel.h
| | | | M	src/shogun/kernel/SpectrumMismatchRBFKernel.cpp
| | | | M	src/shogun/kernel/SpectrumMismatchRBFKernel.h
| | | | M	src/shogun/kernel/SpectrumRBFKernel.cpp
| | | | M	src/shogun/kernel/SpectrumRBFKernel.h
| | | | M	src/shogun/kernel/SphericalKernel.cpp
| | | | M	src/shogun/kernel/SphericalKernel.h
| | | | M	src/shogun/kernel/SplineKernel.cpp
| | | | M	src/shogun/kernel/SplineKernel.h
| | | | M	src/shogun/kernel/SqrtDiagKernelNormalizer.h
| | | | M	src/shogun/kernel/StringKernel.h
| | | | M	src/shogun/kernel/TStudentKernel.cpp
| | | | M	src/shogun/kernel/TStudentKernel.h
| | | | M	src/shogun/kernel/TanimotoKernelNormalizer.h
| | | | M	src/shogun/kernel/TensorProductPairKernel.cpp
| | | | M	src/shogun/kernel/TensorProductPairKernel.h
| | | | M	src/shogun/kernel/VarianceKernelNormalizer.h
| | | | M	src/shogun/kernel/WaveKernel.cpp
| | | | M	src/shogun/kernel/WaveKernel.h
| | | | M	src/shogun/kernel/WaveletKernel.cpp
| | | | M	src/shogun/kernel/WaveletKernel.h
| | | | M	src/shogun/kernel/WeightedCommWordStringKernel.cpp
| | | | M	src/shogun/kernel/WeightedCommWordStringKernel.h
| | | | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | | | M	src/shogun/kernel/WeightedDegreePositionStringKernel.h
| | | | M	src/shogun/kernel/WeightedDegreeRBFKernel.cpp
| | | | M	src/shogun/kernel/WeightedDegreeRBFKernel.h
| | | | M	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | | | M	src/shogun/kernel/WeightedDegreeStringKernel.h
| | | | M	src/shogun/kernel/ZeroMeanCenterKernelNormalizer.h
| | | | M	src/shogun/lib/Array.h
| | | | M	src/shogun/lib/Array2.h
| | | | M	src/shogun/lib/Array3.h
| | | | M	src/shogun/lib/AsciiFile.cpp
| | | | M	src/shogun/lib/AsciiFile.h
| | | | M	src/shogun/lib/BinaryFile.cpp
| | | | M	src/shogun/lib/BinaryFile.h
| | | | M	src/shogun/lib/BinaryStream.h
| | | | M	src/shogun/lib/BitString.h
| | | | M	src/shogun/lib/Cache.h
| | | | M	src/shogun/lib/Compressor.cpp
| | | | M	src/shogun/lib/Compressor.h
| | | | M	src/shogun/lib/Cplex.cpp
| | | | M	src/shogun/lib/Cplex.h
| | | | M	src/shogun/lib/DataType.cpp
| | | | M	src/shogun/lib/DataType.h
| | | | M	src/shogun/lib/DynInt.h
| | | | M	src/shogun/lib/DynamicArray.h
| | | | M	src/shogun/lib/DynamicObjectArray.h
| | | | M	src/shogun/lib/File.cpp
| | | | M	src/shogun/lib/File.h
| | | | M	src/shogun/lib/GCArray.h
| | | | M	src/shogun/lib/HDF5File.cpp
| | | | M	src/shogun/lib/HDF5File.h
| | | | M	src/shogun/lib/Hash.cpp
| | | | M	src/shogun/lib/Hash.h
| | | | M	src/shogun/lib/IOBuffer.cpp
| | | | M	src/shogun/lib/IOBuffer.h
| | | | M	src/shogun/lib/IndirectObject.h
| | | | M	src/shogun/lib/InputParser.h
| | | | M	src/shogun/lib/LibSVMFile.h
| | | | M	src/shogun/lib/List.h
| | | | M	src/shogun/lib/Loss.h
| | | | M	src/shogun/lib/Mathematics.cpp
| | | | M	src/shogun/lib/Mathematics.h
| | | | M	src/shogun/lib/MemoryMappedFile.h
| | | | M	src/shogun/lib/ParseBuffer.h
| | | | M	src/shogun/lib/SerializableAsciiFile.cpp
| | | | M	src/shogun/lib/SerializableAsciiFile.h
| | | | M	src/shogun/lib/SerializableAsciiReader00.cpp
| | | | M	src/shogun/lib/SerializableAsciiReader00.h
| | | | M	src/shogun/lib/SerializableFile.cpp
| | | | M	src/shogun/lib/SerializableFile.h
| | | | M	src/shogun/lib/SerializableHdf5File.cpp
| | | | M	src/shogun/lib/SerializableHdf5File.h
| | | | M	src/shogun/lib/SerializableHdf5Reader00.cpp
| | | | M	src/shogun/lib/SerializableHdf5Reader00.h
| | | | M	src/shogun/lib/SerializableJsonFile.cpp
| | | | M	src/shogun/lib/SerializableJsonFile.h
| | | | M	src/shogun/lib/SerializableJsonReader00.cpp
| | | | M	src/shogun/lib/SerializableJsonReader00.h
| | | | M	src/shogun/lib/SerializableXmlFile.cpp
| | | | M	src/shogun/lib/SerializableXmlFile.h
| | | | M	src/shogun/lib/SerializableXmlReader00.cpp
| | | | M	src/shogun/lib/SerializableXmlReader00.h
| | | | M	src/shogun/lib/Set.h
| | | | M	src/shogun/lib/ShogunException.cpp
| | | | M	src/shogun/lib/Signal.cpp
| | | | M	src/shogun/lib/Signal.h
| | | | M	src/shogun/lib/SimpleFile.h
| | | | M	src/shogun/lib/StreamingAsciiFile.cpp
| | | | M	src/shogun/lib/StreamingAsciiFile.h
| | | | M	src/shogun/lib/StreamingFile.cpp
| | | | M	src/shogun/lib/StreamingFile.h
| | | | M	src/shogun/lib/StreamingFileFromFeatures.cpp
| | | | M	src/shogun/lib/StreamingFileFromFeatures.h
| | | | M	src/shogun/lib/StreamingFileFromSimpleFeatures.h
| | | | M	src/shogun/lib/StreamingFileFromSparseFeatures.h
| | | | M	src/shogun/lib/StreamingFileFromStringFeatures.h
| | | | M	src/shogun/lib/Time.cpp
| | | | M	src/shogun/lib/Time.h
| | | | M	src/shogun/lib/Trie.cpp
| | | | M	src/shogun/lib/Trie.h
| | | | M	src/shogun/lib/arpack.cpp
| | | | M	src/shogun/lib/arpack.h
| | | | M	src/shogun/lib/common.h
| | | | M	src/shogun/lib/io.cpp
| | | | M	src/shogun/lib/io.h
| | | | M	src/shogun/lib/lapack.cpp
| | | | M	src/shogun/lib/lapack.h
| | | | M	src/shogun/lib/memory.cpp
| | | | M	src/shogun/machine/DistanceMachine.cpp
| | | | M	src/shogun/machine/DistanceMachine.h
| | | | M	src/shogun/machine/KernelMachine.cpp
| | | | M	src/shogun/machine/KernelMachine.h
| | | | M	src/shogun/machine/LinearMachine.cpp
| | | | M	src/shogun/machine/LinearMachine.h
| | | | M	src/shogun/machine/Machine.cpp
| | | | M	src/shogun/machine/Machine.h
| | | | M	src/shogun/machine/OnlineLinearMachine.cpp
| | | | M	src/shogun/machine/OnlineLinearMachine.h
| | | | M	src/shogun/modelselection/GridSearchModelSelection.cpp
| | | | M	src/shogun/modelselection/GridSearchModelSelection.h
| | | | M	src/shogun/modelselection/ModelSelection.cpp
| | | | M	src/shogun/modelselection/ModelSelection.h
| | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | | M	src/shogun/modelselection/ParameterCombination.cpp
| | | | M	src/shogun/modelselection/ParameterCombination.h
| | | | M	src/shogun/preprocessor/ClassicIsomap.h
| | | | M	src/shogun/preprocessor/ClassicMDS.cpp
| | | | M	src/shogun/preprocessor/ClassicMDS.h
| | | | M	src/shogun/preprocessor/DecompressString.h
| | | | M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| | | | M	src/shogun/preprocessor/Isomap.h
| | | | M	src/shogun/preprocessor/KernelPCACut.cpp
| | | | M	src/shogun/preprocessor/KernelPCACut.h
| | | | M	src/shogun/preprocessor/LandmarkIsomap.h
| | | | M	src/shogun/preprocessor/LandmarkMDS.cpp
| | | | M	src/shogun/preprocessor/LandmarkMDS.h
| | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | | | M	src/shogun/preprocessor/LogPlusOne.cpp
| | | | M	src/shogun/preprocessor/LogPlusOne.h
| | | | M	src/shogun/preprocessor/NormOne.cpp
| | | | M	src/shogun/preprocessor/NormOne.h
| | | | M	src/shogun/preprocessor/PCA.cpp
| | | | M	src/shogun/preprocessor/PCA.h
| | | | M	src/shogun/preprocessor/Preprocessor.cpp
| | | | M	src/shogun/preprocessor/Preprocessor.h
| | | | M	src/shogun/preprocessor/PruneVarSubMean.cpp
| | | | M	src/shogun/preprocessor/PruneVarSubMean.h
| | | | M	src/shogun/preprocessor/RandomFourierGaussPreproc.cpp
| | | | M	src/shogun/preprocessor/RandomFourierGaussPreproc.h
| | | | M	src/shogun/preprocessor/SimplePreprocessor.h
| | | | M	src/shogun/preprocessor/SortUlongString.cpp
| | | | M	src/shogun/preprocessor/SortUlongString.h
| | | | M	src/shogun/preprocessor/SortWordString.cpp
| | | | M	src/shogun/preprocessor/SortWordString.h
| | | | M	src/shogun/preprocessor/SparsePreprocessor.h
| | | | M	src/shogun/preprocessor/StringPreprocessor.h
| | | | M	src/shogun/regression/KRR.cpp
| | | | M	src/shogun/regression/KRR.h
| | | | M	src/shogun/regression/svr/LibSVR.cpp
| | | | M	src/shogun/regression/svr/LibSVR.h
| | | | M	src/shogun/regression/svr/MKLRegression.cpp
| | | | M	src/shogun/regression/svr/MKLRegression.h
| | | | M	src/shogun/regression/svr/SVRLight.cpp
| | | | M	src/shogun/regression/svr/SVRLight.h
| | | | M	src/shogun/structure/DynProg.cpp
| | | | M	src/shogun/structure/DynProg.h
| | | | M	src/shogun/structure/IntronList.cpp
| | | | M	src/shogun/structure/IntronList.h
| | | | M	src/shogun/structure/Plif.cpp
| | | | M	src/shogun/structure/Plif.h
| | | | M	src/shogun/structure/PlifArray.cpp
| | | | M	src/shogun/structure/PlifArray.h
| | | | M	src/shogun/structure/PlifBase.h
| | | | M	src/shogun/structure/PlifMatrix.cpp
| | | | M	src/shogun/structure/PlifMatrix.h
| | | | M	src/shogun/structure/SegmentLoss.cpp
| | | | M	src/shogun/structure/SegmentLoss.h
| | | | M	src/shogun/ui/GUIClassifier.cpp
| | | | M	src/shogun/ui/GUIDistance.cpp
| | | | M	src/shogun/ui/GUIFeatures.cpp
| | | | M	src/shogun/ui/GUIHMM.cpp
| | | | M	src/shogun/ui/GUIKernel.cpp
| | | | M	src/shogun/ui/GUILabels.cpp
| | | | M	src/shogun/ui/GUIMath.cpp
| | | | M	src/shogun/ui/GUIPluginEstimate.cpp
| | | | M	src/shogun/ui/GUIPreprocessor.cpp
| | | | M	src/shogun/ui/GUIStructure.cpp
| | | | M	src/shogun/ui/GUITime.cpp
| | | | M	src/shogun/ui/SGInterface.cpp
| | | | M	src/shogun/ui/SGInterface.h
| | | |     
* | | | commit 7719b1c7dd0d686aa22a7a0d260e7deaa71683fa
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Mon Jul 18 15:38:13 2011 +0200
| | |   
| | |       make ppwm example a bit more meaningful
| | |   
| | |   M	examples/undocumented/python_modular/distribution_ppwm_modular.py
| | |    
* | | commit ebf230ae6c15318ecc6d004888a863b0cb345621
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 18 10:35:00 2011 +0200
| | | 
| | |     update documentation to new layout (libshogun never needs to be
| | |     specified on ./configure --interfaces=xxx from now on)
| | | 
| | | M	src/INSTALL
| | | M	src/README.developer
| | | M	src/configure
| | |    
* | | commit 118155e82bbb9710446bf048a1eaff65e3b576f2
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 18 10:10:39 2011 +0200
| | | 
| | |     fix configure to not generate a.out cruft
| | | 
| | | M	src/configure
| | |    
* | | commit 5dbeb215377eb085ba44d6d951595a7025453423
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 18 09:49:48 2011 +0200
| | | 
| | |     move modular into interfaces/
| | | 
| | | M	src/Makefile.template
| | | A	src/interfaces/modular/Classifier.doxy
| | | A	src/interfaces/modular/Classifier.i
| | | A	src/interfaces/modular/Classifier_includes.i
| | | A	src/interfaces/modular/Clustering.doxy
| | | A	src/interfaces/modular/Clustering.i
| | | A	src/interfaces/modular/Clustering_includes.i
| | | A	src/interfaces/modular/Distance.doxy
| | | A	src/interfaces/modular/Distance.i
| | | A	src/interfaces/modular/Distance_includes.i
| | | A	src/interfaces/modular/Distribution.doxy
| | | A	src/interfaces/modular/Distribution.i
| | | A	src/interfaces/modular/Distribution_includes.i
| | | A	src/interfaces/modular/Evaluation.doxy
| | | A	src/interfaces/modular/Evaluation.i
| | | A	src/interfaces/modular/Evaluation_includes.i
| | | A	src/interfaces/modular/Features.doxy
| | | A	src/interfaces/modular/Features.i
| | | A	src/interfaces/modular/Features_includes.i
| | | A	src/interfaces/modular/Kernel.doxy
| | | A	src/interfaces/modular/Kernel.i
| | | A	src/interfaces/modular/Kernel_includes.i
| | | A	src/interfaces/modular/Library.doxy
| | | A	src/interfaces/modular/Library.i
| | | A	src/interfaces/modular/Library_includes.i
| | | A	src/interfaces/modular/Modelselection.doxy
| | | A	src/interfaces/modular/Modelselection.i
| | | A	src/interfaces/modular/Modelselection_includes.i
| | | A	src/interfaces/modular/Preprocessor.doxy
| | | A	src/interfaces/modular/Preprocessor.i
| | | A	src/interfaces/modular/Preprocessor_includes.i
| | | A	src/interfaces/modular/Regression.doxy
| | | A	src/interfaces/modular/Regression.i
| | | A	src/interfaces/modular/Regression_includes.i
| | | A	src/interfaces/modular/SGBase.i
| | | A	src/interfaces/modular/Structure.doxy
| | | A	src/interfaces/modular/Structure.i
| | | A	src/interfaces/modular/Structure_includes.i
| | | D	src/modular/Classifier.doxy
| | | D	src/modular/Classifier.i
| | | D	src/modular/Classifier_includes.i
| | | D	src/modular/Clustering.doxy
| | | D	src/modular/Clustering.i
| | | D	src/modular/Clustering_includes.i
| | | D	src/modular/Distance.doxy
| | | D	src/modular/Distance.i
| | | D	src/modular/Distance_includes.i
| | | D	src/modular/Distribution.doxy
| | | D	src/modular/Distribution.i
| | | D	src/modular/Distribution_includes.i
| | | D	src/modular/Evaluation.doxy
| | | D	src/modular/Evaluation.i
| | | D	src/modular/Evaluation_includes.i
| | | D	src/modular/Features.doxy
| | | D	src/modular/Features.i
| | | D	src/modular/Features_includes.i
| | | D	src/modular/Kernel.doxy
| | | D	src/modular/Kernel.i
| | | D	src/modular/Kernel_includes.i
| | | D	src/modular/Library.doxy
| | | D	src/modular/Library.i
| | | D	src/modular/Library_includes.i
| | | D	src/modular/Modelselection.doxy
| | | D	src/modular/Modelselection.i
| | | D	src/modular/Modelselection_includes.i
| | | D	src/modular/Preprocessor.doxy
| | | D	src/modular/Preprocessor.i
| | | D	src/modular/Preprocessor_includes.i
| | | D	src/modular/Regression.doxy
| | | D	src/modular/Regression.i
| | | D	src/modular/Regression_includes.i
| | | D	src/modular/SGBase.i
| | | D	src/modular/Structure.doxy
| | | D	src/modular/Structure.i
| | | D	src/modular/Structure_includes.i
| | |    
* | | commit 300df4a5dabc5059edb0f40cde570877c5f9b517
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 18 09:37:18 2011 +0200
| | | 
| | |     fix a number of path issues caused by interface transition
| | | 
| | | M	examples/Makefile
| | | M	examples/generate_documented.sh
| | | M	examples/undocumented/java_modular/check.sh
| | | M	src/Makefile.template
| | | M	src/NEWS
| | | M	src/configure
| | |    
* | | commit 61a56fcc8bb7a69470c4e15a9206b14927e38c9e
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 18 08:58:44 2011 +0200
| | | 
| | |     generated shogun/Makefile depends on Makefile.template
| | | 
| | | M	src/Makefile
| | |      
* | |   commit 9c679cc8cb7eff120d707d1936856c8915a9a494
|\ \ \  Merge: ff7b19d 2283c65
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Sun Jul 17 23:56:52 2011 -0700
| | |   
| | |       Merge pull request #207 from frx/python_stream_bad
| | |       
| | |       StreamingFeatures modular interfaces
| | |    
| * | commit 2283c65edf14c46d0d418030ca20f3c7b03aa218
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Jul 18 10:15:15 2011 +0530
| | | 
| | |     minor makefile change to compile.
| | | 
| | | M	src/Makefile
| | |    
| * | commit 02dc299ba7e78a185c41658a0b88c1f790784b3d
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Jul 18 08:26:43 2011 +0530
| | | 
| | |     python_modular seems to compile now, with the streaming changes.
| | | 
| | | M	src/modular/Library.i
| | |    
| * | commit 39605f05106c9b5a0f12b67d5970ce448f7faa56
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Jul 18 07:34:44 2011 +0530
| | | 
| | |     Updated .i files to the latest upstream version.
| | |     Included streaming* into Features.i, Library.i and Classifier.i
| | | 
| | | M	src/modular/Classifier.i
| | | M	src/modular/Clustering.i
| | | M	src/modular/Distance.i
| | | M	src/modular/Distribution.i
| | | M	src/modular/Evaluation.i
| | | M	src/modular/Features.i
| | | M	src/modular/Features_includes.i
| | | M	src/modular/Library.i
| | | M	src/modular/Library_includes.i
| | | M	src/modular/Regression.i
| | | M	src/modular/Structure.i
| | |    
| * | commit 0fd04b62a6229ae5565291a5d8dd5fb8e2ec128d
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Jul 18 01:56:57 2011 +0530
| | | 
| | |     Unintended change in Preprocessor.i reverted.
| | | 
| | | M	src/modular/Preprocessor.i
| | | M	src/modular/Preprocessor_includes.i
| | |    
| * | commit 4c15f676682bcf7e7771d0eb18d6eaee69833a29
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Jul 18 01:40:38 2011 +0530
| | | 
| | |     Modified swig interfaces for streaming* to include everything in exisiting .i files.
| | | 
| | | M	src/.generate_link_dependencies.py
| | | M	src/modular/Classifier.i
| | | M	src/modular/Clustering.i
| | | M	src/modular/Distance.i
| | | M	src/modular/Distribution.i
| | | M	src/modular/Evaluation.i
| | | M	src/modular/Features.i
| | | M	src/modular/Features_includes.i
| | | M	src/modular/Library.i
| | | M	src/modular/Library_includes.i
| | | M	src/modular/Preprocessor.i
| | | M	src/modular/Preprocessor_includes.i
| | | M	src/modular/Regression.i
| | | D	src/modular/Streaming.i
| | | D	src/modular/Streaming_includes.i
| | | M	src/modular/Structure.i
| | |    
| * | commit ecfaff6c3df00ef41c1e6a218ef242a7f9ecdf74
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sat Jul 16 04:46:13 2011 +0530
| | | 
| | |     Typo found.
| | | 
| | | M	src/.generate_link_dependencies.py
| | |    
| * | commit e9567b242a5c1b18d971bc396377c39d037d1ab8
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sat Jul 16 03:00:35 2011 +0530
| | | 
| | |     Changed order of includes in streaming interface file, moved inline definition in StreamingAsciiFile to the .h file
| | | 
| | | M	src/modular/Streaming.i
| | | M	src/shogun/lib/StreamingAsciiFile.cpp
| | | M	src/shogun/lib/StreamingAsciiFile.h
| | |    
| * | commit 8cee47d08768bc31f84067997a7e8009f43d29ee
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sat Jul 16 02:52:46 2011 +0530
| | | 
| | |     Improved swig interface files for streaming features. Added dependency for Streaming.i
| | | 
| | | M	src/.generate_link_dependencies.py
| | | M	src/modular/Classifier.i
| | | M	src/modular/Classifier_includes.i
| | | M	src/modular/Regression.i
| | | M	src/modular/Streaming.i
| | | M	src/modular/Streaming_includes.i
| | | M	src/shogun/lib/InputParser.h
| | | M	src/shogun/lib/StreamingFile.h
| | |    
| * | commit 0103e9c48c6c9d282c3e93c196039f20ff845c2a
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Fri Jul 15 21:36:29 2011 +0530
| | | 
| | |     Basic StreamingFeatures swig interface files.
| | | 
| | | A	src/modular/Streaming.i
| | | A	src/modular/Streaming_includes.i
| | |    
* | | commit ff7b19d833b88b3e14b88b198c30b43d39e21f82
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Mon Jul 18 08:52:59 2011 +0200
| |   
| |       don't try to tail configure.log if file doesn't exist
| |   
| |   M	src/configure
| |   
* | commit ccc1ef335c4184694b8fefea179bee7907dc922c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jul 18 02:58:13 2011 +0200
| | 
| |     fix errors after occurring with doxygen etc caused by the interfaces/
| |     move
| | 
| | M	src/.r-install.sh
| | M	src/Makefile.template
| | M	src/interfaces/cmdline_static/CmdLineInterface.cpp
| | M	src/modular/Classifier.doxy
| | M	src/modular/Clustering.doxy
| | M	src/modular/Distance.doxy
| | M	src/modular/Distribution.doxy
| | M	src/modular/Evaluation.doxy
| | M	src/modular/Features.doxy
| | M	src/modular/Kernel.doxy
| | M	src/modular/Library.doxy
| | M	src/modular/Modelselection.doxy
| | M	src/modular/Preprocessor.doxy
| | M	src/modular/Regression.doxy
| | M	src/modular/Structure.doxy
| | M	src/shogun/lib/AsciiFile.h
| |   
* | commit b01925e6f434d4f08e50ac69b91f5391dd38ea14
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jul 18 02:08:47 2011 +0200
| | 
| |     Restructure repository, such that
| |     
| |     - libshogun and libshogunui are merged and in shogun subdir
| |     - all interfaces are found in src/interfaces/<interface>
| |     - static interfaces have a _static suffix
| | 
| | M	.gitignore
| | D	examples/undocumented/cmdline/check.sh
| | D	examples/undocumented/cmdline/classifier_gmnpsvm.sg
| | D	examples/undocumented/cmdline/classifier_gpbtsvm.sg
| | D	examples/undocumented/cmdline/classifier_knn.sg
| | D	examples/undocumented/cmdline/classifier_lda.sg
| | D	examples/undocumented/cmdline/classifier_liblinear.sg
| | D	examples/undocumented/cmdline/classifier_libsvm.sg
| | D	examples/undocumented/cmdline/classifier_libsvmmulticlass.sg
| | D	examples/undocumented/cmdline/classifier_libsvmoneclass.sg
| | D	examples/undocumented/cmdline/classifier_mpdsvm.sg
| | D	examples/undocumented/cmdline/classifier_perceptron.sg
| | D	examples/undocumented/cmdline/classifier_subgradientsvm.sg
| | D	examples/undocumented/cmdline/classifier_svmlight.sg
| | D	examples/undocumented/cmdline/classifier_svmlin.sg
| | D	examples/undocumented/cmdline/classifier_svmocas.sg
| | D	examples/undocumented/cmdline/classifier_svmsgd.sg
| | D	examples/undocumented/cmdline/clustering_hierarchical.sg
| | D	examples/undocumented/cmdline/clustering_kmeans.sg
| | D	examples/undocumented/cmdline/distance_braycurtis.sg
| | D	examples/undocumented/cmdline/distance_canberra.sg
| | D	examples/undocumented/cmdline/distance_canberraword.sg
| | D	examples/undocumented/cmdline/distance_chebyshew.sg
| | D	examples/undocumented/cmdline/distance_chisquare.sg
| | D	examples/undocumented/cmdline/distance_cosine.sg
| | D	examples/undocumented/cmdline/distance_euclidean.sg
| | D	examples/undocumented/cmdline/distance_geodesic.sg
| | D	examples/undocumented/cmdline/distance_hammingword.sg
| | D	examples/undocumented/cmdline/distance_jensen.sg
| | D	examples/undocumented/cmdline/distance_manhatten.sg
| | D	examples/undocumented/cmdline/distance_manhattenword.sg
| | D	examples/undocumented/cmdline/distance_minkowski.sg
| | D	examples/undocumented/cmdline/distance_tanimoto.sg
| | D	examples/undocumented/cmdline/distribution_histogram.sg
| | D	examples/undocumented/cmdline/distribution_hmm.sg
| | D	examples/undocumented/cmdline/distribution_linearhmm.sg
| | D	examples/undocumented/cmdline/kernel_chi2.sg
| | D	examples/undocumented/cmdline/kernel_combined.sg
| | D	examples/undocumented/cmdline/kernel_commulongstring.sg
| | D	examples/undocumented/cmdline/kernel_commwordstring.sg
| | D	examples/undocumented/cmdline/kernel_const.sg
| | D	examples/undocumented/cmdline/kernel_diag.sg
| | D	examples/undocumented/cmdline/kernel_distance.sg
| | D	examples/undocumented/cmdline/kernel_fixeddegreestring.sg
| | D	examples/undocumented/cmdline/kernel_gaussian.sg
| | D	examples/undocumented/cmdline/kernel_gaussianshift.sg
| | D	examples/undocumented/cmdline/kernel_linear.sg
| | D	examples/undocumented/cmdline/kernel_linearbyte.sg
| | D	examples/undocumented/cmdline/kernel_linearstring.sg
| | D	examples/undocumented/cmdline/kernel_linearword.sg
| | D	examples/undocumented/cmdline/kernel_localalignmentstring.sg
| | D	examples/undocumented/cmdline/kernel_localityimprovedstring.sg
| | D	examples/undocumented/cmdline/kernel_oligostring.sg
| | D	examples/undocumented/cmdline/kernel_poly.sg
| | D	examples/undocumented/cmdline/kernel_polymatchstring.sg
| | D	examples/undocumented/cmdline/kernel_polymatchword.sg
| | D	examples/undocumented/cmdline/kernel_sigmoid.sg
| | D	examples/undocumented/cmdline/kernel_simplelocalityimprovedstring.sg
| | D	examples/undocumented/cmdline/kernel_sparsegaussian.sg
| | D	examples/undocumented/cmdline/kernel_sparselinear.sg
| | D	examples/undocumented/cmdline/kernel_sparsepoly.sg
| | D	examples/undocumented/cmdline/kernel_top.sg
| | D	examples/undocumented/cmdline/kernel_weightedcommwordstring.sg
| | D	examples/undocumented/cmdline/kernel_weighteddegreepositionstring.sg
| | D	examples/undocumented/cmdline/kernel_weighteddegreestring.sg
| | D	examples/undocumented/cmdline/mkl_multiclass.sg
| | D	examples/undocumented/cmdline/preproc_logplusone.sg
| | D	examples/undocumented/cmdline/preproc_normone.sg
| | D	examples/undocumented/cmdline/preproc_prunevarsubmean.sg
| | D	examples/undocumented/cmdline/preproc_sortulongstring.sg
| | D	examples/undocumented/cmdline/preproc_sortwordstring.sg
| | D	examples/undocumented/cmdline/regression_krr.sg
| | D	examples/undocumented/cmdline/regression_libsvr.sg
| | D	examples/undocumented/cmdline/regression_svrlight.sg
| | A	examples/undocumented/cmdline_static/check.sh
| | A	examples/undocumented/cmdline_static/classifier_gmnpsvm.sg
| | A	examples/undocumented/cmdline_static/classifier_gpbtsvm.sg
| | A	examples/undocumented/cmdline_static/classifier_knn.sg
| | A	examples/undocumented/cmdline_static/classifier_lda.sg
| | A	examples/undocumented/cmdline_static/classifier_liblinear.sg
| | A	examples/undocumented/cmdline_static/classifier_libsvm.sg
| | A	examples/undocumented/cmdline_static/classifier_libsvmmulticlass.sg
| | A	examples/undocumented/cmdline_static/classifier_libsvmoneclass.sg
| | A	examples/undocumented/cmdline_static/classifier_mpdsvm.sg
| | A	examples/undocumented/cmdline_static/classifier_perceptron.sg
| | A	examples/undocumented/cmdline_static/classifier_subgradientsvm.sg
| | A	examples/undocumented/cmdline_static/classifier_svmlight.sg
| | A	examples/undocumented/cmdline_static/classifier_svmlin.sg
| | A	examples/undocumented/cmdline_static/classifier_svmocas.sg
| | A	examples/undocumented/cmdline_static/classifier_svmsgd.sg
| | A	examples/undocumented/cmdline_static/clustering_hierarchical.sg
| | A	examples/undocumented/cmdline_static/clustering_kmeans.sg
| | A	examples/undocumented/cmdline_static/distance_braycurtis.sg
| | A	examples/undocumented/cmdline_static/distance_canberra.sg
| | A	examples/undocumented/cmdline_static/distance_canberraword.sg
| | A	examples/undocumented/cmdline_static/distance_chebyshew.sg
| | A	examples/undocumented/cmdline_static/distance_chisquare.sg
| | A	examples/undocumented/cmdline_static/distance_cosine.sg
| | A	examples/undocumented/cmdline_static/distance_euclidean.sg
| | A	examples/undocumented/cmdline_static/distance_geodesic.sg
| | A	examples/undocumented/cmdline_static/distance_hammingword.sg
| | A	examples/undocumented/cmdline_static/distance_jensen.sg
| | A	examples/undocumented/cmdline_static/distance_manhatten.sg
| | A	examples/undocumented/cmdline_static/distance_manhattenword.sg
| | A	examples/undocumented/cmdline_static/distance_minkowski.sg
| | A	examples/undocumented/cmdline_static/distance_tanimoto.sg
| | A	examples/undocumented/cmdline_static/distribution_histogram.sg
| | A	examples/undocumented/cmdline_static/distribution_hmm.sg
| | A	examples/undocumented/cmdline_static/distribution_linearhmm.sg
| | A	examples/undocumented/cmdline_static/kernel_chi2.sg
| | A	examples/undocumented/cmdline_static/kernel_combined.sg
| | A	examples/undocumented/cmdline_static/kernel_commulongstring.sg
| | A	examples/undocumented/cmdline_static/kernel_commwordstring.sg
| | A	examples/undocumented/cmdline_static/kernel_const.sg
| | A	examples/undocumented/cmdline_static/kernel_diag.sg
| | A	examples/undocumented/cmdline_static/kernel_distance.sg
| | A	examples/undocumented/cmdline_static/kernel_fixeddegreestring.sg
| | A	examples/undocumented/cmdline_static/kernel_gaussian.sg
| | A	examples/undocumented/cmdline_static/kernel_gaussianshift.sg
| | A	examples/undocumented/cmdline_static/kernel_linear.sg
| | A	examples/undocumented/cmdline_static/kernel_linearbyte.sg
| | A	examples/undocumented/cmdline_static/kernel_linearstring.sg
| | A	examples/undocumented/cmdline_static/kernel_linearword.sg
| | A	examples/undocumented/cmdline_static/kernel_localalignmentstring.sg
| | A	examples/undocumented/cmdline_static/kernel_localityimprovedstring.sg
| | A	examples/undocumented/cmdline_static/kernel_oligostring.sg
| | A	examples/undocumented/cmdline_static/kernel_poly.sg
| | A	examples/undocumented/cmdline_static/kernel_polymatchstring.sg
| | A	examples/undocumented/cmdline_static/kernel_polymatchword.sg
| | A	examples/undocumented/cmdline_static/kernel_sigmoid.sg
| | A	examples/undocumented/cmdline_static/kernel_simplelocalityimprovedstring.sg
| | A	examples/undocumented/cmdline_static/kernel_sparsegaussian.sg
| | A	examples/undocumented/cmdline_static/kernel_sparselinear.sg
| | A	examples/undocumented/cmdline_static/kernel_sparsepoly.sg
| | A	examples/undocumented/cmdline_static/kernel_top.sg
| | A	examples/undocumented/cmdline_static/kernel_weightedcommwordstring.sg
| | A	examples/undocumented/cmdline_static/kernel_weighteddegreepositionstring.sg
| | A	examples/undocumented/cmdline_static/kernel_weighteddegreestring.sg
| | A	examples/undocumented/cmdline_static/mkl_multiclass.sg
| | A	examples/undocumented/cmdline_static/preproc_logplusone.sg
| | A	examples/undocumented/cmdline_static/preproc_normone.sg
| | A	examples/undocumented/cmdline_static/preproc_prunevarsubmean.sg
| | A	examples/undocumented/cmdline_static/preproc_sortulongstring.sg
| | A	examples/undocumented/cmdline_static/preproc_sortwordstring.sg
| | A	examples/undocumented/cmdline_static/regression_krr.sg
| | A	examples/undocumented/cmdline_static/regression_libsvr.sg
| | A	examples/undocumented/cmdline_static/regression_svrlight.sg
| | D	examples/undocumented/elwms/foo.R
| | D	examples/undocumented/elwms/octave_matplotlib.m
| | D	examples/undocumented/elwms/octave_to_python.m
| | D	examples/undocumented/elwms/octave_to_r.m
| | D	examples/undocumented/elwms/python_to_octave.py
| | D	examples/undocumented/elwms/r_to_octave.m
| | D	examples/undocumented/elwms/r_to_python.R
| | A	examples/undocumented/elwms_static/foo.R
| | A	examples/undocumented/elwms_static/octave_matplotlib.m
| | A	examples/undocumented/elwms_static/octave_to_python.m
| | A	examples/undocumented/elwms_static/octave_to_r.m
| | A	examples/undocumented/elwms_static/python_to_octave.py
| | A	examples/undocumented/elwms_static/r_to_octave.m
| | A	examples/undocumented/elwms_static/r_to_python.R
| | D	examples/undocumented/matlab
| | A	examples/undocumented/matlab_static
| | D	examples/undocumented/octave
| | A	examples/undocumented/octave_static
| | D	examples/undocumented/python/check.sh
| | D	examples/undocumented/python/classifier_gmnpsvm.py
| | D	examples/undocumented/python/classifier_gpbtsvm.py
| | D	examples/undocumented/python/classifier_knn.py
| | D	examples/undocumented/python/classifier_lda.py
| | D	examples/undocumented/python/classifier_libsvm.py
| | D	examples/undocumented/python/classifier_libsvmmulticlass.py
| | D	examples/undocumented/python/classifier_libsvmoneclass.py
| | D	examples/undocumented/python/classifier_mpdsvm.py
| | D	examples/undocumented/python/classifier_perceptron.py
| | D	examples/undocumented/python/classifier_svmlight.py
| | D	examples/undocumented/python/clustering_hierarchical.py
| | D	examples/undocumented/python/clustering_kmeans.py
| | D	examples/undocumented/python/distance_braycurtis.py
| | D	examples/undocumented/python/distance_canberra.py
| | D	examples/undocumented/python/distance_canberraword.py
| | D	examples/undocumented/python/distance_chebyshew.py
| | D	examples/undocumented/python/distance_chisquare.py
| | D	examples/undocumented/python/distance_cosine.py
| | D	examples/undocumented/python/distance_euclidian.py
| | D	examples/undocumented/python/distance_geodesic.py
| | D	examples/undocumented/python/distance_hammingword.py
| | D	examples/undocumented/python/distance_jensen.py
| | D	examples/undocumented/python/distance_manhatten.py
| | D	examples/undocumented/python/distance_manhattenword.py
| | D	examples/undocumented/python/distance_minkowski.py
| | D	examples/undocumented/python/distance_tanimoto.py
| | D	examples/undocumented/python/distribution_histogram.py
| | D	examples/undocumented/python/distribution_hmm.py
| | D	examples/undocumented/python/distribution_linearhmm.py
| | D	examples/undocumented/python/graphical/svm_classification.py
| | D	examples/undocumented/python/graphical/svr_regression.py
| | D	examples/undocumented/python/graphical/util.py
| | D	examples/undocumented/python/kernel_chi2.py
| | D	examples/undocumented/python/kernel_combined.py
| | D	examples/undocumented/python/kernel_commulongstring.py
| | D	examples/undocumented/python/kernel_commwordstring.py
| | D	examples/undocumented/python/kernel_const.py
| | D	examples/undocumented/python/kernel_diag.py
| | D	examples/undocumented/python/kernel_fixeddegreestring.py
| | D	examples/undocumented/python/kernel_gaussian.py
| | D	examples/undocumented/python/kernel_gaussianshift.py
| | D	examples/undocumented/python/kernel_linear.py
| | D	examples/undocumented/python/kernel_linearbyte.py
| | D	examples/undocumented/python/kernel_linearstring.py
| | D	examples/undocumented/python/kernel_linearword.py
| | D	examples/undocumented/python/kernel_localalignmentstring.py
| | D	examples/undocumented/python/kernel_localityimprovedstring.py
| | D	examples/undocumented/python/kernel_oligostring.py
| | D	examples/undocumented/python/kernel_pluginestimatehistogram.py
| | D	examples/undocumented/python/kernel_poly.py
| | D	examples/undocumented/python/kernel_polymatchstring.py
| | D	examples/undocumented/python/kernel_polymatchword.py
| | D	examples/undocumented/python/kernel_salzbergstring.py
| | D	examples/undocumented/python/kernel_sigmoid.py
| | D	examples/undocumented/python/kernel_simplelocalityimprovedstring.py
| | D	examples/undocumented/python/kernel_weightedcommwordstring.py
| | D	examples/undocumented/python/kernel_weighteddegreepositionstring.py
| | D	examples/undocumented/python/kernel_weighteddegreestring.py
| | D	examples/undocumented/python/mkl_multiclass.py
| | D	examples/undocumented/python/mkl_regression.py
| | D	examples/undocumented/python/mkl_twoclass.py
| | D	examples/undocumented/python/preproc_logplusone.py
| | D	examples/undocumented/python/preproc_normone.py
| | D	examples/undocumented/python/preproc_prunevarsubmean.py
| | D	examples/undocumented/python/preproc_sortulongstring.py
| | D	examples/undocumented/python/preproc_sortwordstring.py
| | D	examples/undocumented/python/regression_krr.py
| | D	examples/undocumented/python/regression_libsvr.py
| | D	examples/undocumented/python/regression_svrlight.py
| | D	examples/undocumented/python/tools/__init__.py
| | D	examples/undocumented/python/tools/load.py
| | A	examples/undocumented/python_static/check.sh
| | A	examples/undocumented/python_static/classifier_gmnpsvm.py
| | A	examples/undocumented/python_static/classifier_gpbtsvm.py
| | A	examples/undocumented/python_static/classifier_knn.py
| | A	examples/undocumented/python_static/classifier_lda.py
| | A	examples/undocumented/python_static/classifier_libsvm.py
| | A	examples/undocumented/python_static/classifier_libsvmmulticlass.py
| | A	examples/undocumented/python_static/classifier_libsvmoneclass.py
| | A	examples/undocumented/python_static/classifier_mpdsvm.py
| | A	examples/undocumented/python_static/classifier_perceptron.py
| | A	examples/undocumented/python_static/classifier_svmlight.py
| | A	examples/undocumented/python_static/clustering_hierarchical.py
| | A	examples/undocumented/python_static/clustering_kmeans.py
| | A	examples/undocumented/python_static/distance_braycurtis.py
| | A	examples/undocumented/python_static/distance_canberra.py
| | A	examples/undocumented/python_static/distance_canberraword.py
| | A	examples/undocumented/python_static/distance_chebyshew.py
| | A	examples/undocumented/python_static/distance_chisquare.py
| | A	examples/undocumented/python_static/distance_cosine.py
| | A	examples/undocumented/python_static/distance_euclidian.py
| | A	examples/undocumented/python_static/distance_geodesic.py
| | A	examples/undocumented/python_static/distance_hammingword.py
| | A	examples/undocumented/python_static/distance_jensen.py
| | A	examples/undocumented/python_static/distance_manhatten.py
| | A	examples/undocumented/python_static/distance_manhattenword.py
| | A	examples/undocumented/python_static/distance_minkowski.py
| | A	examples/undocumented/python_static/distance_tanimoto.py
| | A	examples/undocumented/python_static/distribution_histogram.py
| | A	examples/undocumented/python_static/distribution_hmm.py
| | A	examples/undocumented/python_static/distribution_linearhmm.py
| | A	examples/undocumented/python_static/graphical/svm_classification.py
| | A	examples/undocumented/python_static/graphical/svr_regression.py
| | A	examples/undocumented/python_static/graphical/util.py
| | A	examples/undocumented/python_static/kernel_chi2.py
| | A	examples/undocumented/python_static/kernel_combined.py
| | A	examples/undocumented/python_static/kernel_commulongstring.py
| | A	examples/undocumented/python_static/kernel_commwordstring.py
| | A	examples/undocumented/python_static/kernel_const.py
| | A	examples/undocumented/python_static/kernel_diag.py
| | A	examples/undocumented/python_static/kernel_fixeddegreestring.py
| | A	examples/undocumented/python_static/kernel_gaussian.py
| | A	examples/undocumented/python_static/kernel_gaussianshift.py
| | A	examples/undocumented/python_static/kernel_linear.py
| | A	examples/undocumented/python_static/kernel_linearbyte.py
| | A	examples/undocumented/python_static/kernel_linearstring.py
| | A	examples/undocumented/python_static/kernel_linearword.py
| | A	examples/undocumented/python_static/kernel_localalignmentstring.py
| | A	examples/undocumented/python_static/kernel_localityimprovedstring.py
| | A	examples/undocumented/python_static/kernel_oligostring.py
| | A	examples/undocumented/python_static/kernel_pluginestimatehistogram.py
| | A	examples/undocumented/python_static/kernel_poly.py
| | A	examples/undocumented/python_static/kernel_polymatchstring.py
| | A	examples/undocumented/python_static/kernel_polymatchword.py
| | A	examples/undocumented/python_static/kernel_salzbergstring.py
| | A	examples/undocumented/python_static/kernel_sigmoid.py
| | A	examples/undocumented/python_static/kernel_simplelocalityimprovedstring.py
| | A	examples/undocumented/python_static/kernel_weightedcommwordstring.py
| | A	examples/undocumented/python_static/kernel_weighteddegreepositionstring.py
| | A	examples/undocumented/python_static/kernel_weighteddegreestring.py
| | A	examples/undocumented/python_static/mkl_multiclass.py
| | A	examples/undocumented/python_static/mkl_regression.py
| | A	examples/undocumented/python_static/mkl_twoclass.py
| | A	examples/undocumented/python_static/preproc_logplusone.py
| | A	examples/undocumented/python_static/preproc_normone.py
| | A	examples/undocumented/python_static/preproc_prunevarsubmean.py
| | A	examples/undocumented/python_static/preproc_sortulongstring.py
| | A	examples/undocumented/python_static/preproc_sortwordstring.py
| | A	examples/undocumented/python_static/regression_krr.py
| | A	examples/undocumented/python_static/regression_libsvr.py
| | A	examples/undocumented/python_static/regression_svrlight.py
| | A	examples/undocumented/python_static/tools/__init__.py
| | A	examples/undocumented/python_static/tools/load.py
| | D	examples/undocumented/r/check.sh
| | D	examples/undocumented/r/classifier_gmnpsvm.R
| | D	examples/undocumented/r/classifier_gpbtsvm.R
| | D	examples/undocumented/r/classifier_knn.R
| | D	examples/undocumented/r/classifier_lda.R
| | D	examples/undocumented/r/classifier_libsvm.R
| | D	examples/undocumented/r/classifier_libsvmmulticlass.R
| | D	examples/undocumented/r/classifier_libsvmoneclass.R
| | D	examples/undocumented/r/classifier_mpdsvm.R
| | D	examples/undocumented/r/classifier_perceptron.R
| | D	examples/undocumented/r/classifier_svmlight.R
| | D	examples/undocumented/r/clustering_hierarchical.R
| | D	examples/undocumented/r/clustering_kmeans.R
| | D	examples/undocumented/r/distance_braycurtis.R
| | D	examples/undocumented/r/distance_canberra.R
| | D	examples/undocumented/r/distance_canberraword.R
| | D	examples/undocumented/r/distance_chebyshew.R
| | D	examples/undocumented/r/distance_chisquare.R
| | D	examples/undocumented/r/distance_cosine.R
| | D	examples/undocumented/r/distance_euclidian.R
| | D	examples/undocumented/r/distance_geodesic.R
| | D	examples/undocumented/r/distance_hammingword.R
| | D	examples/undocumented/r/distance_jensen.R
| | D	examples/undocumented/r/distance_manhatten.R
| | D	examples/undocumented/r/distance_manhattenword.R
| | D	examples/undocumented/r/distance_minkowski.R
| | D	examples/undocumented/r/distance_tanimoto.R
| | D	examples/undocumented/r/distribution_histogram.R
| | D	examples/undocumented/r/distribution_hmm.R
| | D	examples/undocumented/r/distribution_linearhmm.R
| | D	examples/undocumented/r/graphical/hmm.R
| | D	examples/undocumented/r/graphical/svm_classification.R
| | D	examples/undocumented/r/graphical/svr_regression.R
| | D	examples/undocumented/r/kernel_chi2.R
| | D	examples/undocumented/r/kernel_combined.R
| | D	examples/undocumented/r/kernel_commulongstring.R
| | D	examples/undocumented/r/kernel_commwordstring.R
| | D	examples/undocumented/r/kernel_const.R
| | D	examples/undocumented/r/kernel_diag.R
| | D	examples/undocumented/r/kernel_distance.R
| | D	examples/undocumented/r/kernel_fixeddegreestring.R
| | D	examples/undocumented/r/kernel_gaussian.R
| | D	examples/undocumented/r/kernel_gaussianshift.R
| | D	examples/undocumented/r/kernel_histogramword.R
| | D	examples/undocumented/r/kernel_linear.R
| | D	examples/undocumented/r/kernel_linearstring.R
| | D	examples/undocumented/r/kernel_localalignmentstring.R
| | D	examples/undocumented/r/kernel_localityimprovedstring.R
| | D	examples/undocumented/r/kernel_oligostring.R
| | D	examples/undocumented/r/kernel_poly.R
| | D	examples/undocumented/r/kernel_polymatchstring.R
| | D	examples/undocumented/r/kernel_sigmoid.R
| | D	examples/undocumented/r/kernel_simplelocalityimprovedstring.R
| | D	examples/undocumented/r/kernel_spectrum.R
| | D	examples/undocumented/r/kernel_weightedcommwordstring.R
| | D	examples/undocumented/r/kernel_weighteddegreepositionstring.R
| | D	examples/undocumented/r/kernel_weighteddegreestring.R
| | D	examples/undocumented/r/mkl_classify_christmas_star.R
| | D	examples/undocumented/r/mkl_multiclass.R
| | D	examples/undocumented/r/mkl_regression_3sine_waves.R
| | D	examples/undocumented/r/mkl_regression_sine.R
| | D	examples/undocumented/r/mkl_wd.R
| | D	examples/undocumented/r/preproc_logplusone.R
| | D	examples/undocumented/r/preproc_normone.R
| | D	examples/undocumented/r/preproc_prunevarsubmean.R
| | D	examples/undocumented/r/preproc_sortulongstring.R
| | D	examples/undocumented/r/preproc_sortwordstring.R
| | D	examples/undocumented/r/regression_krr.R
| | D	examples/undocumented/r/regression_libsvr.R
| | D	examples/undocumented/r/regression_svrlight.R
| | A	examples/undocumented/r_static/check.sh
| | A	examples/undocumented/r_static/classifier_gmnpsvm.R
| | A	examples/undocumented/r_static/classifier_gpbtsvm.R
| | A	examples/undocumented/r_static/classifier_knn.R
| | A	examples/undocumented/r_static/classifier_lda.R
| | A	examples/undocumented/r_static/classifier_libsvm.R
| | A	examples/undocumented/r_static/classifier_libsvmmulticlass.R
| | A	examples/undocumented/r_static/classifier_libsvmoneclass.R
| | A	examples/undocumented/r_static/classifier_mpdsvm.R
| | A	examples/undocumented/r_static/classifier_perceptron.R
| | A	examples/undocumented/r_static/classifier_svmlight.R
| | A	examples/undocumented/r_static/clustering_hierarchical.R
| | A	examples/undocumented/r_static/clustering_kmeans.R
| | A	examples/undocumented/r_static/distance_braycurtis.R
| | A	examples/undocumented/r_static/distance_canberra.R
| | A	examples/undocumented/r_static/distance_canberraword.R
| | A	examples/undocumented/r_static/distance_chebyshew.R
| | A	examples/undocumented/r_static/distance_chisquare.R
| | A	examples/undocumented/r_static/distance_cosine.R
| | A	examples/undocumented/r_static/distance_euclidian.R
| | A	examples/undocumented/r_static/distance_geodesic.R
| | A	examples/undocumented/r_static/distance_hammingword.R
| | A	examples/undocumented/r_static/distance_jensen.R
| | A	examples/undocumented/r_static/distance_manhatten.R
| | A	examples/undocumented/r_static/distance_manhattenword.R
| | A	examples/undocumented/r_static/distance_minkowski.R
| | A	examples/undocumented/r_static/distance_tanimoto.R
| | A	examples/undocumented/r_static/distribution_histogram.R
| | A	examples/undocumented/r_static/distribution_hmm.R
| | A	examples/undocumented/r_static/distribution_linearhmm.R
| | A	examples/undocumented/r_static/graphical/hmm.R
| | A	examples/undocumented/r_static/graphical/svm_classification.R
| | A	examples/undocumented/r_static/graphical/svr_regression.R
| | A	examples/undocumented/r_static/kernel_chi2.R
| | A	examples/undocumented/r_static/kernel_combined.R
| | A	examples/undocumented/r_static/kernel_commulongstring.R
| | A	examples/undocumented/r_static/kernel_commwordstring.R
| | A	examples/undocumented/r_static/kernel_const.R
| | A	examples/undocumented/r_static/kernel_diag.R
| | A	examples/undocumented/r_static/kernel_distance.R
| | A	examples/undocumented/r_static/kernel_fixeddegreestring.R
| | A	examples/undocumented/r_static/kernel_gaussian.R
| | A	examples/undocumented/r_static/kernel_gaussianshift.R
| | A	examples/undocumented/r_static/kernel_histogramword.R
| | A	examples/undocumented/r_static/kernel_linear.R
| | A	examples/undocumented/r_static/kernel_linearstring.R
| | A	examples/undocumented/r_static/kernel_localalignmentstring.R
| | A	examples/undocumented/r_static/kernel_localityimprovedstring.R
| | A	examples/undocumented/r_static/kernel_oligostring.R
| | A	examples/undocumented/r_static/kernel_poly.R
| | A	examples/undocumented/r_static/kernel_polymatchstring.R
| | A	examples/undocumented/r_static/kernel_sigmoid.R
| | A	examples/undocumented/r_static/kernel_simplelocalityimprovedstring.R
| | A	examples/undocumented/r_static/kernel_spectrum.R
| | A	examples/undocumented/r_static/kernel_weightedcommwordstring.R
| | A	examples/undocumented/r_static/kernel_weighteddegreepositionstring.R
| | A	examples/undocumented/r_static/kernel_weighteddegreestring.R
| | A	examples/undocumented/r_static/mkl_classify_christmas_star.R
| | A	examples/undocumented/r_static/mkl_multiclass.R
| | A	examples/undocumented/r_static/mkl_regression_3sine_waves.R
| | A	examples/undocumented/r_static/mkl_regression_sine.R
| | A	examples/undocumented/r_static/mkl_wd.R
| | A	examples/undocumented/r_static/preproc_logplusone.R
| | A	examples/undocumented/r_static/preproc_normone.R
| | A	examples/undocumented/r_static/preproc_prunevarsubmean.R
| | A	examples/undocumented/r_static/preproc_sortulongstring.R
| | A	examples/undocumented/r_static/preproc_sortwordstring.R
| | A	examples/undocumented/r_static/regression_krr.R
| | A	examples/undocumented/r_static/regression_libsvr.R
| | A	examples/undocumented/r_static/regression_svrlight.R
| | M	src/.generate_link_dependencies.py
| | M	src/Makefile
| | M	src/Makefile.template
| | D	src/cmdline/CmdLineInterface.cpp
| | D	src/cmdline/CmdLineInterface.h
| | D	src/cmdline/cmdline.cpp
| | M	src/configure
| | D	src/csharp_modular/sg_print_functions.cpp
| | D	src/csharp_modular/swig_typemaps.i
| | D	src/elwms/elwms.cpp
| | A	src/interfaces/cmdline_static/CmdLineInterface.cpp
| | A	src/interfaces/cmdline_static/CmdLineInterface.h
| | A	src/interfaces/cmdline_static/cmdline.cpp
| | A	src/interfaces/csharp_modular/sg_print_functions.cpp
| | A	src/interfaces/csharp_modular/swig_typemaps.i
| | A	src/interfaces/elwms_static/elwms.cpp
| | A	src/interfaces/java_modular/build.xml
| | A	src/interfaces/java_modular/sg_print_functions.cpp
| | A	src/interfaces/java_modular/swig_typemaps.i
| | A	src/interfaces/lua_modular/sg_print_functions.cpp
| | A	src/interfaces/lua_modular/shogun.lua
| | A	src/interfaces/lua_modular/swig_typemaps.i
| | A	src/interfaces/matlab_static/MatlabInterface.cpp
| | A	src/interfaces/matlab_static/MatlabInterface.h
| | A	src/interfaces/octave_modular/sg_print_functions.cpp
| | A	src/interfaces/octave_modular/swig_typemaps.i
| | A	src/interfaces/octave_static/OctaveInterface.cpp
| | A	src/interfaces/octave_static/OctaveInterface.h
| | A	src/interfaces/python_modular/sg_print_functions.cpp
| | A	src/interfaces/python_modular/swig_typemaps.i
| | A	src/interfaces/python_static/PythonInterface.cpp
| | A	src/interfaces/python_static/PythonInterface.h
| | A	src/interfaces/r_modular/sg_print_functions.cpp
| | A	src/interfaces/r_modular/swig_typemaps.i
| | A	src/interfaces/r_static/RInterface.cpp
| | A	src/interfaces/r_static/RInterface.h
| | A	src/interfaces/ruby_modular/sg_print_functions.cpp
| | A	src/interfaces/ruby_modular/swig_typemaps.i
| | D	src/java_modular/build.xml
| | D	src/java_modular/sg_print_functions.cpp
| | D	src/java_modular/swig_typemaps.i
| | D	src/libshogun/base/DynArray.h
| | D	src/libshogun/base/Parallel.cpp
| | D	src/libshogun/base/Parallel.h
| | D	src/libshogun/base/Parameter.cpp
| | D	src/libshogun/base/Parameter.h
| | D	src/libshogun/base/SGObject.cpp
| | D	src/libshogun/base/SGObject.h
| | D	src/libshogun/base/Version.cpp
| | D	src/libshogun/base/Version.h
| | D	src/libshogun/base/class_list.cpp.py
| | D	src/libshogun/base/class_list.cpp.templ
| | D	src/libshogun/base/class_list.h
| | D	src/libshogun/base/init.cpp
| | D	src/libshogun/base/init.h
| | D	src/libshogun/classifier/AveragedPerceptron.cpp
| | D	src/libshogun/classifier/AveragedPerceptron.h
| | D	src/libshogun/classifier/GaussianNaiveBayes.cpp
| | D	src/libshogun/classifier/GaussianNaiveBayes.h
| | D	src/libshogun/classifier/KNN.cpp
| | D	src/libshogun/classifier/KNN.h
| | D	src/libshogun/classifier/KernelPerceptron.cpp
| | D	src/libshogun/classifier/KernelPerceptron.h
| | D	src/libshogun/classifier/LDA.cpp
| | D	src/libshogun/classifier/LDA.h
| | D	src/libshogun/classifier/LPBoost.cpp
| | D	src/libshogun/classifier/LPBoost.h
| | D	src/libshogun/classifier/LPM.cpp
| | D	src/libshogun/classifier/LPM.h
| | D	src/libshogun/classifier/Perceptron.cpp
| | D	src/libshogun/classifier/Perceptron.h
| | D	src/libshogun/classifier/PluginEstimate.cpp
| | D	src/libshogun/classifier/PluginEstimate.h
| | D	src/libshogun/classifier/SubGradientLPM.cpp
| | D	src/libshogun/classifier/SubGradientLPM.h
| | D	src/libshogun/classifier/__init__.py
| | D	src/libshogun/classifier/mkl/MKL.cpp
| | D	src/libshogun/classifier/mkl/MKL.h
| | D	src/libshogun/classifier/mkl/MKLClassification.cpp
| | D	src/libshogun/classifier/mkl/MKLClassification.h
| | D	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| | D	src/libshogun/classifier/mkl/MKLMultiClass.h
| | D	src/libshogun/classifier/mkl/MKLMultiClassGLPK.cpp
| | D	src/libshogun/classifier/mkl/MKLMultiClassGLPK.h
| | D	src/libshogun/classifier/mkl/MKLMultiClassGradient.cpp
| | D	src/libshogun/classifier/mkl/MKLMultiClassGradient.h
| | D	src/libshogun/classifier/mkl/MKLMultiClassOptimizationBase.cpp
| | D	src/libshogun/classifier/mkl/MKLMultiClassOptimizationBase.h
| | D	src/libshogun/classifier/mkl/MKLOneClass.cpp
| | D	src/libshogun/classifier/mkl/MKLOneClass.h
| | D	src/libshogun/classifier/svm/CPLEXSVM.cpp
| | D	src/libshogun/classifier/svm/CPLEXSVM.h
| | D	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| | D	src/libshogun/classifier/svm/DomainAdaptationSVM.h
| | D	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | D	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| | D	src/libshogun/classifier/svm/GMNPLib.cpp
| | D	src/libshogun/classifier/svm/GMNPLib.h
| | D	src/libshogun/classifier/svm/GMNPSVM.cpp
| | D	src/libshogun/classifier/svm/GMNPSVM.h
| | D	src/libshogun/classifier/svm/GNPPLib.cpp
| | D	src/libshogun/classifier/svm/GNPPLib.h
| | D	src/libshogun/classifier/svm/GNPPSVM.cpp
| | D	src/libshogun/classifier/svm/GNPPSVM.h
| | D	src/libshogun/classifier/svm/GPBTSVM.cpp
| | D	src/libshogun/classifier/svm/GPBTSVM.h
| | D	src/libshogun/classifier/svm/LaRank.cpp
| | D	src/libshogun/classifier/svm/LaRank.h
| | D	src/libshogun/classifier/svm/LibLinear.cpp
| | D	src/libshogun/classifier/svm/LibLinear.h
| | D	src/libshogun/classifier/svm/LibSVM.cpp
| | D	src/libshogun/classifier/svm/LibSVM.h
| | D	src/libshogun/classifier/svm/LibSVMMultiClass.cpp
| | D	src/libshogun/classifier/svm/LibSVMMultiClass.h
| | D	src/libshogun/classifier/svm/LibSVMOneClass.cpp
| | D	src/libshogun/classifier/svm/LibSVMOneClass.h
| | D	src/libshogun/classifier/svm/MPDSVM.cpp
| | D	src/libshogun/classifier/svm/MPDSVM.h
| | D	src/libshogun/classifier/svm/MultiClassSVM.cpp
| | D	src/libshogun/classifier/svm/MultiClassSVM.h
| | D	src/libshogun/classifier/svm/OnlineLibLinear.cpp
| | D	src/libshogun/classifier/svm/OnlineLibLinear.h
| | D	src/libshogun/classifier/svm/OnlineSVMSGD.cpp
| | D	src/libshogun/classifier/svm/OnlineSVMSGD.h
| | D	src/libshogun/classifier/svm/QPBSVMLib.cpp
| | D	src/libshogun/classifier/svm/QPBSVMLib.h
| | D	src/libshogun/classifier/svm/SGDQN.cpp
| | D	src/libshogun/classifier/svm/SGDQN.h
| | D	src/libshogun/classifier/svm/SVM.cpp
| | D	src/libshogun/classifier/svm/SVM.h
| | D	src/libshogun/classifier/svm/SVMLight.cpp
| | D	src/libshogun/classifier/svm/SVMLight.h
| | D	src/libshogun/classifier/svm/SVMLightOneClass.cpp
| | D	src/libshogun/classifier/svm/SVMLightOneClass.h
| | D	src/libshogun/classifier/svm/SVMLin.cpp
| | D	src/libshogun/classifier/svm/SVMLin.h
| | D	src/libshogun/classifier/svm/SVMOcas.cpp
| | D	src/libshogun/classifier/svm/SVMOcas.h
| | D	src/libshogun/classifier/svm/SVMSGD.cpp
| | D	src/libshogun/classifier/svm/SVMSGD.h
| | D	src/libshogun/classifier/svm/SVM_libsvm.cpp
| | D	src/libshogun/classifier/svm/SVM_libsvm.h
| | D	src/libshogun/classifier/svm/SVM_linear.cpp
| | D	src/libshogun/classifier/svm/SVM_linear.h
| | D	src/libshogun/classifier/svm/ScatterSVM.cpp
| | D	src/libshogun/classifier/svm/ScatterSVM.h
| | D	src/libshogun/classifier/svm/SubGradientSVM.cpp
| | D	src/libshogun/classifier/svm/SubGradientSVM.h
| | D	src/libshogun/classifier/svm/Tron.cpp
| | D	src/libshogun/classifier/svm/Tron.h
| | D	src/libshogun/classifier/svm/WDSVMOcas.cpp
| | D	src/libshogun/classifier/svm/WDSVMOcas.h
| | D	src/libshogun/classifier/svm/__init__.py
| | D	src/libshogun/classifier/svm/gpdt.cpp
| | D	src/libshogun/classifier/svm/gpdt.h
| | D	src/libshogun/classifier/svm/gpdtsolve.cpp
| | D	src/libshogun/classifier/svm/gpdtsolve.h
| | D	src/libshogun/classifier/svm/gpm.cpp
| | D	src/libshogun/classifier/svm/gpm.h
| | D	src/libshogun/classifier/svm/libocas.cpp
| | D	src/libshogun/classifier/svm/libocas.h
| | D	src/libshogun/classifier/svm/libocas_common.h
| | D	src/libshogun/classifier/svm/libqp.h
| | D	src/libshogun/classifier/svm/libqp_splx.cpp
| | D	src/libshogun/classifier/svm/pr_loqo.cpp
| | D	src/libshogun/classifier/svm/pr_loqo.h
| | D	src/libshogun/classifier/svm/ssl.cpp
| | D	src/libshogun/classifier/svm/ssl.h
| | D	src/libshogun/clustering/GMM.cpp
| | D	src/libshogun/clustering/GMM.h
| | D	src/libshogun/clustering/Hierarchical.cpp
| | D	src/libshogun/clustering/Hierarchical.h
| | D	src/libshogun/clustering/KMeans.cpp
| | D	src/libshogun/clustering/KMeans.h
| | D	src/libshogun/distance/AttenuatedEuclidianDistance.cpp
| | D	src/libshogun/distance/AttenuatedEuclidianDistance.h
| | D	src/libshogun/distance/BrayCurtisDistance.cpp
| | D	src/libshogun/distance/BrayCurtisDistance.h
| | D	src/libshogun/distance/CanberraMetric.cpp
| | D	src/libshogun/distance/CanberraMetric.h
| | D	src/libshogun/distance/CanberraWordDistance.cpp
| | D	src/libshogun/distance/CanberraWordDistance.h
| | D	src/libshogun/distance/ChebyshewMetric.cpp
| | D	src/libshogun/distance/ChebyshewMetric.h
| | D	src/libshogun/distance/ChiSquareDistance.cpp
| | D	src/libshogun/distance/ChiSquareDistance.h
| | D	src/libshogun/distance/CosineDistance.cpp
| | D	src/libshogun/distance/CosineDistance.h
| | D	src/libshogun/distance/CustomDistance.cpp
| | D	src/libshogun/distance/CustomDistance.h
| | D	src/libshogun/distance/Distance.cpp
| | D	src/libshogun/distance/Distance.h
| | D	src/libshogun/distance/EuclidianDistance.cpp
| | D	src/libshogun/distance/EuclidianDistance.h
| | D	src/libshogun/distance/GeodesicMetric.cpp
| | D	src/libshogun/distance/GeodesicMetric.h
| | D	src/libshogun/distance/HammingWordDistance.cpp
| | D	src/libshogun/distance/HammingWordDistance.h
| | D	src/libshogun/distance/JensenMetric.cpp
| | D	src/libshogun/distance/JensenMetric.h
| | D	src/libshogun/distance/KernelDistance.cpp
| | D	src/libshogun/distance/KernelDistance.h
| | D	src/libshogun/distance/ManhattanMetric.cpp
| | D	src/libshogun/distance/ManhattanMetric.h
| | D	src/libshogun/distance/ManhattanWordDistance.cpp
| | D	src/libshogun/distance/ManhattanWordDistance.h
| | D	src/libshogun/distance/MinkowskiMetric.cpp
| | D	src/libshogun/distance/MinkowskiMetric.h
| | D	src/libshogun/distance/RealDistance.h
| | D	src/libshogun/distance/SimpleDistance.h
| | D	src/libshogun/distance/SparseDistance.h
| | D	src/libshogun/distance/SparseEuclidianDistance.cpp
| | D	src/libshogun/distance/SparseEuclidianDistance.h
| | D	src/libshogun/distance/StringDistance.h
| | D	src/libshogun/distance/TanimotoDistance.cpp
| | D	src/libshogun/distance/TanimotoDistance.h
| | D	src/libshogun/distributions/Distribution.cpp
| | D	src/libshogun/distributions/Distribution.h
| | D	src/libshogun/distributions/GHMM.cpp
| | D	src/libshogun/distributions/GHMM.h
| | D	src/libshogun/distributions/Gaussian.cpp
| | D	src/libshogun/distributions/Gaussian.h
| | D	src/libshogun/distributions/HMM.cpp
| | D	src/libshogun/distributions/HMM.h
| | D	src/libshogun/distributions/Histogram.cpp
| | D	src/libshogun/distributions/Histogram.h
| | D	src/libshogun/distributions/LinearHMM.cpp
| | D	src/libshogun/distributions/LinearHMM.h
| | D	src/libshogun/distributions/PositionalPWM.cpp
| | D	src/libshogun/distributions/PositionalPWM.h
| | D	src/libshogun/evaluation/BinaryClassEvaluation.h
| | D	src/libshogun/evaluation/ContingencyTableEvaluation.cpp
| | D	src/libshogun/evaluation/ContingencyTableEvaluation.h
| | D	src/libshogun/evaluation/CrossValidation.cpp
| | D	src/libshogun/evaluation/CrossValidation.h
| | D	src/libshogun/evaluation/Evaluation.h
| | D	src/libshogun/evaluation/MeanSquaredError.cpp
| | D	src/libshogun/evaluation/MeanSquaredError.h
| | D	src/libshogun/evaluation/MulticlassAccuracy.cpp
| | D	src/libshogun/evaluation/MulticlassAccuracy.h
| | D	src/libshogun/evaluation/PRCEvaluation.cpp
| | D	src/libshogun/evaluation/PRCEvaluation.h
| | D	src/libshogun/evaluation/ROCEvaluation.cpp
| | D	src/libshogun/evaluation/ROCEvaluation.h
| | D	src/libshogun/evaluation/SplittingStrategy.cpp
| | D	src/libshogun/evaluation/SplittingStrategy.h
| | D	src/libshogun/evaluation/StratifiedCrossValidationSplitting.cpp
| | D	src/libshogun/evaluation/StratifiedCrossValidationSplitting.h
| | D	src/libshogun/features/Alphabet.cpp
| | D	src/libshogun/features/Alphabet.h
| | D	src/libshogun/features/AttributeFeatures.cpp
| | D	src/libshogun/features/AttributeFeatures.h
| | D	src/libshogun/features/CombinedDotFeatures.cpp
| | D	src/libshogun/features/CombinedDotFeatures.h
| | D	src/libshogun/features/CombinedFeatures.cpp
| | D	src/libshogun/features/CombinedFeatures.h
| | D	src/libshogun/features/DotFeatures.cpp
| | D	src/libshogun/features/DotFeatures.h
| | D	src/libshogun/features/DummyFeatures.h
| | D	src/libshogun/features/ExplicitSpecFeatures.cpp
| | D	src/libshogun/features/ExplicitSpecFeatures.h
| | D	src/libshogun/features/FKFeatures.cpp
| | D	src/libshogun/features/FKFeatures.h
| | D	src/libshogun/features/FeatureTypes.h
| | D	src/libshogun/features/Features.cpp
| | D	src/libshogun/features/Features.h
| | D	src/libshogun/features/HashedWDFeatures.cpp
| | D	src/libshogun/features/HashedWDFeatures.h
| | D	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| | D	src/libshogun/features/HashedWDFeaturesTransposed.h
| | D	src/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| | D	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| | D	src/libshogun/features/LBPPyrDotFeatures.cpp
| | D	src/libshogun/features/LBPPyrDotFeatures.h
| | D	src/libshogun/features/Labels.cpp
| | D	src/libshogun/features/Labels.h
| | D	src/libshogun/features/PolyFeatures.cpp
| | D	src/libshogun/features/PolyFeatures.h
| | D	src/libshogun/features/RealFileFeatures.cpp
| | D	src/libshogun/features/RealFileFeatures.h
| | D	src/libshogun/features/SNPFeatures.cpp
| | D	src/libshogun/features/SNPFeatures.h
| | D	src/libshogun/features/SimpleFeatures.h
| | D	src/libshogun/features/SparseFeatures.h
| | D	src/libshogun/features/SparsePolyFeatures.cpp
| | D	src/libshogun/features/SparsePolyFeatures.h
| | D	src/libshogun/features/StreamingDotFeatures.h
| | D	src/libshogun/features/StreamingFeatures.h
| | D	src/libshogun/features/StreamingSimpleFeatures.h
| | D	src/libshogun/features/StreamingSparseFeatures.h
| | D	src/libshogun/features/StreamingStringFeatures.h
| | D	src/libshogun/features/StringFeatures.h
| | D	src/libshogun/features/StringFileFeatures.h
| | D	src/libshogun/features/Subset.cpp
| | D	src/libshogun/features/Subset.h
| | D	src/libshogun/features/TOPFeatures.cpp
| | D	src/libshogun/features/TOPFeatures.h
| | D	src/libshogun/features/WDFeatures.cpp
| | D	src/libshogun/features/WDFeatures.h
| | D	src/libshogun/features/__init__.py
| | D	src/libshogun/kernel/ANOVAKernel.cpp
| | D	src/libshogun/kernel/ANOVAKernel.h
| | D	src/libshogun/kernel/AUCKernel.cpp
| | D	src/libshogun/kernel/AUCKernel.h
| | D	src/libshogun/kernel/AvgDiagKernelNormalizer.h
| | D	src/libshogun/kernel/BesselKernel.cpp
| | D	src/libshogun/kernel/BesselKernel.h
| | D	src/libshogun/kernel/CauchyKernel.cpp
| | D	src/libshogun/kernel/CauchyKernel.h
| | D	src/libshogun/kernel/Chi2Kernel.cpp
| | D	src/libshogun/kernel/Chi2Kernel.h
| | D	src/libshogun/kernel/CircularKernel.cpp
| | D	src/libshogun/kernel/CircularKernel.h
| | D	src/libshogun/kernel/CombinedKernel.cpp
| | D	src/libshogun/kernel/CombinedKernel.h
| | D	src/libshogun/kernel/CommUlongStringKernel.cpp
| | D	src/libshogun/kernel/CommUlongStringKernel.h
| | D	src/libshogun/kernel/CommWordStringKernel.cpp
| | D	src/libshogun/kernel/CommWordStringKernel.h
| | D	src/libshogun/kernel/ConstKernel.cpp
| | D	src/libshogun/kernel/ConstKernel.h
| | D	src/libshogun/kernel/CustomKernel.cpp
| | D	src/libshogun/kernel/CustomKernel.h
| | D	src/libshogun/kernel/DiagKernel.cpp
| | D	src/libshogun/kernel/DiagKernel.h
| | D	src/libshogun/kernel/DiceKernelNormalizer.h
| | D	src/libshogun/kernel/DistanceKernel.cpp
| | D	src/libshogun/kernel/DistanceKernel.h
| | D	src/libshogun/kernel/DistantSegmentsKernel.cpp
| | D	src/libshogun/kernel/DistantSegmentsKernel.h
| | D	src/libshogun/kernel/DotKernel.h
| | D	src/libshogun/kernel/ExponentialKernel.cpp
| | D	src/libshogun/kernel/ExponentialKernel.h
| | D	src/libshogun/kernel/FirstElementKernelNormalizer.h
| | D	src/libshogun/kernel/FixedDegreeStringKernel.cpp
| | D	src/libshogun/kernel/FixedDegreeStringKernel.h
| | D	src/libshogun/kernel/GaussianKernel.cpp
| | D	src/libshogun/kernel/GaussianKernel.h
| | D	src/libshogun/kernel/GaussianMatchStringKernel.cpp
| | D	src/libshogun/kernel/GaussianMatchStringKernel.h
| | D	src/libshogun/kernel/GaussianShiftKernel.cpp
| | D	src/libshogun/kernel/GaussianShiftKernel.h
| | D	src/libshogun/kernel/GaussianShortRealKernel.cpp
| | D	src/libshogun/kernel/GaussianShortRealKernel.h
| | D	src/libshogun/kernel/HistogramIntersectionKernel.cpp
| | D	src/libshogun/kernel/HistogramIntersectionKernel.h
| | D	src/libshogun/kernel/HistogramWordStringKernel.cpp
| | D	src/libshogun/kernel/HistogramWordStringKernel.h
| | D	src/libshogun/kernel/IdentityKernelNormalizer.h
| | D	src/libshogun/kernel/InverseMultiQuadricKernel.cpp
| | D	src/libshogun/kernel/InverseMultiQuadricKernel.h
| | D	src/libshogun/kernel/Kernel.cpp
| | D	src/libshogun/kernel/Kernel.h
| | D	src/libshogun/kernel/KernelNormalizer.h
| | D	src/libshogun/kernel/LinearKernel.cpp
| | D	src/libshogun/kernel/LinearKernel.h
| | D	src/libshogun/kernel/LinearStringKernel.cpp
| | D	src/libshogun/kernel/LinearStringKernel.h
| | D	src/libshogun/kernel/LocalAlignmentStringKernel.cpp
| | D	src/libshogun/kernel/LocalAlignmentStringKernel.h
| | D	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
| | D	src/libshogun/kernel/LocalityImprovedStringKernel.h
| | D	src/libshogun/kernel/LogKernel.cpp
| | D	src/libshogun/kernel/LogKernel.h
| | D	src/libshogun/kernel/MatchWordStringKernel.cpp
| | D	src/libshogun/kernel/MatchWordStringKernel.h
| | D	src/libshogun/kernel/MultiquadricKernel.cpp
| | D	src/libshogun/kernel/MultiquadricKernel.h
| | D	src/libshogun/kernel/MultitaskKernelMaskNormalizer.h
| | D	src/libshogun/kernel/MultitaskKernelMaskPairNormalizer.h
| | D	src/libshogun/kernel/MultitaskKernelMklNormalizer.h
| | D	src/libshogun/kernel/MultitaskKernelNormalizer.h
| | D	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
| | D	src/libshogun/kernel/MultitaskKernelTreeNormalizer.h
| | D	src/libshogun/kernel/OligoStringKernel.cpp
| | D	src/libshogun/kernel/OligoStringKernel.h
| | D	src/libshogun/kernel/PolyKernel.cpp
| | D	src/libshogun/kernel/PolyKernel.h
| | D	src/libshogun/kernel/PolyMatchStringKernel.cpp
| | D	src/libshogun/kernel/PolyMatchStringKernel.h
| | D	src/libshogun/kernel/PolyMatchWordStringKernel.cpp
| | D	src/libshogun/kernel/PolyMatchWordStringKernel.h
| | D	src/libshogun/kernel/PowerKernel.cpp
| | D	src/libshogun/kernel/PowerKernel.h
| | D	src/libshogun/kernel/PyramidChi2.cpp
| | D	src/libshogun/kernel/PyramidChi2.h
| | D	src/libshogun/kernel/RationalQuadraticKernel.cpp
| | D	src/libshogun/kernel/RationalQuadraticKernel.h
| | D	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
| | D	src/libshogun/kernel/RegulatoryModulesStringKernel.h
| | D	src/libshogun/kernel/RidgeKernelNormalizer.h
| | D	src/libshogun/kernel/SNPStringKernel.cpp
| | D	src/libshogun/kernel/SNPStringKernel.h
| | D	src/libshogun/kernel/SalzbergWordStringKernel.cpp
| | D	src/libshogun/kernel/SalzbergWordStringKernel.h
| | D	src/libshogun/kernel/ScatterKernelNormalizer.h
| | D	src/libshogun/kernel/SigmoidKernel.cpp
| | D	src/libshogun/kernel/SigmoidKernel.h
| | D	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| | D	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
| | D	src/libshogun/kernel/SparseKernel.h
| | D	src/libshogun/kernel/SparseSpatialSampleStringKernel.cpp
| | D	src/libshogun/kernel/SparseSpatialSampleStringKernel.h
| | D	src/libshogun/kernel/SpectrumMismatchRBFKernel.cpp
| | D	src/libshogun/kernel/SpectrumMismatchRBFKernel.h
| | D	src/libshogun/kernel/SpectrumRBFKernel.cpp
| | D	src/libshogun/kernel/SpectrumRBFKernel.h
| | D	src/libshogun/kernel/SphericalKernel.cpp
| | D	src/libshogun/kernel/SphericalKernel.h
| | D	src/libshogun/kernel/SplineKernel.cpp
| | D	src/libshogun/kernel/SplineKernel.h
| | D	src/libshogun/kernel/SqrtDiagKernelNormalizer.h
| | D	src/libshogun/kernel/StringKernel.h
| | D	src/libshogun/kernel/TStudentKernel.cpp
| | D	src/libshogun/kernel/TStudentKernel.h
| | D	src/libshogun/kernel/TanimotoKernelNormalizer.h
| | D	src/libshogun/kernel/TensorProductPairKernel.cpp
| | D	src/libshogun/kernel/TensorProductPairKernel.h
| | D	src/libshogun/kernel/VarianceKernelNormalizer.h
| | D	src/libshogun/kernel/WaveKernel.cpp
| | D	src/libshogun/kernel/WaveKernel.h
| | D	src/libshogun/kernel/WaveletKernel.cpp
| | D	src/libshogun/kernel/WaveletKernel.h
| | D	src/libshogun/kernel/WeightedCommWordStringKernel.cpp
| | D	src/libshogun/kernel/WeightedCommWordStringKernel.h
| | D	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| | D	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| | D	src/libshogun/kernel/WeightedDegreeRBFKernel.cpp
| | D	src/libshogun/kernel/WeightedDegreeRBFKernel.h
| | D	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| | D	src/libshogun/kernel/WeightedDegreeStringKernel.h
| | D	src/libshogun/kernel/ZeroMeanCenterKernelNormalizer.h
| | D	src/libshogun/kernel/__init__.py
| | D	src/libshogun/lib/Array.h
| | D	src/libshogun/lib/Array2.h
| | D	src/libshogun/lib/Array3.h
| | D	src/libshogun/lib/AsciiFile.cpp
| | D	src/libshogun/lib/AsciiFile.h
| | D	src/libshogun/lib/BinaryFile.cpp
| | D	src/libshogun/lib/BinaryFile.h
| | D	src/libshogun/lib/BinaryStream.h
| | D	src/libshogun/lib/BitString.h
| | D	src/libshogun/lib/Cache.h
| | D	src/libshogun/lib/Compressor.cpp
| | D	src/libshogun/lib/Compressor.h
| | D	src/libshogun/lib/Cplex.cpp
| | D	src/libshogun/lib/Cplex.h
| | D	src/libshogun/lib/DataType.cpp
| | D	src/libshogun/lib/DataType.h
| | D	src/libshogun/lib/DynInt.h
| | D	src/libshogun/lib/DynamicArray.h
| | D	src/libshogun/lib/DynamicObjectArray.h
| | D	src/libshogun/lib/File.cpp
| | D	src/libshogun/lib/File.h
| | D	src/libshogun/lib/GCArray.h
| | D	src/libshogun/lib/HDF5File.cpp
| | D	src/libshogun/lib/HDF5File.h
| | D	src/libshogun/lib/Hash.cpp
| | D	src/libshogun/lib/Hash.h
| | D	src/libshogun/lib/IOBuffer.cpp
| | D	src/libshogun/lib/IOBuffer.h
| | D	src/libshogun/lib/IndirectObject.h
| | D	src/libshogun/lib/InputParser.h
| | D	src/libshogun/lib/LibSVMFile.h
| | D	src/libshogun/lib/List.h
| | D	src/libshogun/lib/Loss.h
| | D	src/libshogun/lib/Mathematics.cpp
| | D	src/libshogun/lib/Mathematics.h
| | D	src/libshogun/lib/MemoryMappedFile.h
| | D	src/libshogun/lib/ParseBuffer.h
| | D	src/libshogun/lib/SerializableAsciiFile.cpp
| | D	src/libshogun/lib/SerializableAsciiFile.h
| | D	src/libshogun/lib/SerializableAsciiReader00.cpp
| | D	src/libshogun/lib/SerializableAsciiReader00.h
| | D	src/libshogun/lib/SerializableFile.cpp
| | D	src/libshogun/lib/SerializableFile.h
| | D	src/libshogun/lib/SerializableHdf5File.cpp
| | D	src/libshogun/lib/SerializableHdf5File.h
| | D	src/libshogun/lib/SerializableHdf5Reader00.cpp
| | D	src/libshogun/lib/SerializableHdf5Reader00.h
| | D	src/libshogun/lib/SerializableJsonFile.cpp
| | D	src/libshogun/lib/SerializableJsonFile.h
| | D	src/libshogun/lib/SerializableJsonReader00.cpp
| | D	src/libshogun/lib/SerializableJsonReader00.h
| | D	src/libshogun/lib/SerializableXmlFile.cpp
| | D	src/libshogun/lib/SerializableXmlFile.h
| | D	src/libshogun/lib/SerializableXmlReader00.cpp
| | D	src/libshogun/lib/SerializableXmlReader00.h
| | D	src/libshogun/lib/Set.h
| | D	src/libshogun/lib/ShogunException.cpp
| | D	src/libshogun/lib/ShogunException.h
| | D	src/libshogun/lib/Signal.cpp
| | D	src/libshogun/lib/Signal.h
| | D	src/libshogun/lib/SimpleFile.h
| | D	src/libshogun/lib/StreamingAsciiFile.cpp
| | D	src/libshogun/lib/StreamingAsciiFile.h
| | D	src/libshogun/lib/StreamingFile.cpp
| | D	src/libshogun/lib/StreamingFile.h
| | D	src/libshogun/lib/StreamingFileFromFeatures.cpp
| | D	src/libshogun/lib/StreamingFileFromFeatures.h
| | D	src/libshogun/lib/StreamingFileFromSimpleFeatures.h
| | D	src/libshogun/lib/StreamingFileFromSparseFeatures.h
| | D	src/libshogun/lib/StreamingFileFromStringFeatures.h
| | D	src/libshogun/lib/Time.cpp
| | D	src/libshogun/lib/Time.h
| | D	src/libshogun/lib/Trie.cpp
| | D	src/libshogun/lib/Trie.h
| | D	src/libshogun/lib/__init__.py
| | D	src/libshogun/lib/arpack.cpp
| | D	src/libshogun/lib/arpack.h
| | D	src/libshogun/lib/common.h
| | D	src/libshogun/lib/io.cpp
| | D	src/libshogun/lib/io.h
| | D	src/libshogun/lib/lapack.cpp
| | D	src/libshogun/lib/lapack.h
| | D	src/libshogun/lib/memory.cpp
| | D	src/libshogun/lib/memory.h
| | D	src/libshogun/lib/v_array.h
| | D	src/libshogun/machine/DistanceMachine.cpp
| | D	src/libshogun/machine/DistanceMachine.h
| | D	src/libshogun/machine/KernelMachine.cpp
| | D	src/libshogun/machine/KernelMachine.h
| | D	src/libshogun/machine/LinearMachine.cpp
| | D	src/libshogun/machine/LinearMachine.h
| | D	src/libshogun/machine/Machine.cpp
| | D	src/libshogun/machine/Machine.h
| | D	src/libshogun/machine/OnlineLinearMachine.cpp
| | D	src/libshogun/machine/OnlineLinearMachine.h
| | D	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | D	src/libshogun/modelselection/GridSearchModelSelection.h
| | D	src/libshogun/modelselection/ModelSelection.cpp
| | D	src/libshogun/modelselection/ModelSelection.h
| | D	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | D	src/libshogun/modelselection/ModelSelectionParameters.h
| | D	src/libshogun/modelselection/ParameterCombination.cpp
| | D	src/libshogun/modelselection/ParameterCombination.h
| | D	src/libshogun/preprocessor/ClassicIsomap.h
| | D	src/libshogun/preprocessor/ClassicMDS.cpp
| | D	src/libshogun/preprocessor/ClassicMDS.h
| | D	src/libshogun/preprocessor/DecompressString.h
| | D	src/libshogun/preprocessor/DimensionReductionPreprocessor.h
| | D	src/libshogun/preprocessor/Isomap.h
| | D	src/libshogun/preprocessor/KernelPCACut.cpp
| | D	src/libshogun/preprocessor/KernelPCACut.h
| | D	src/libshogun/preprocessor/LandmarkIsomap.h
| | D	src/libshogun/preprocessor/LandmarkMDS.cpp
| | D	src/libshogun/preprocessor/LandmarkMDS.h
| | D	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | D	src/libshogun/preprocessor/LocallyLinearEmbedding.h
| | D	src/libshogun/preprocessor/LogPlusOne.cpp
| | D	src/libshogun/preprocessor/LogPlusOne.h
| | D	src/libshogun/preprocessor/NormOne.cpp
| | D	src/libshogun/preprocessor/NormOne.h
| | D	src/libshogun/preprocessor/PCA.cpp
| | D	src/libshogun/preprocessor/PCA.h
| | D	src/libshogun/preprocessor/Preprocessor.cpp
| | D	src/libshogun/preprocessor/Preprocessor.h
| | D	src/libshogun/preprocessor/PruneVarSubMean.cpp
| | D	src/libshogun/preprocessor/PruneVarSubMean.h
| | D	src/libshogun/preprocessor/RandomFourierGaussPreproc.cpp
| | D	src/libshogun/preprocessor/RandomFourierGaussPreproc.h
| | D	src/libshogun/preprocessor/SimplePreprocessor.h
| | D	src/libshogun/preprocessor/SortUlongString.cpp
| | D	src/libshogun/preprocessor/SortUlongString.h
| | D	src/libshogun/preprocessor/SortWordString.cpp
| | D	src/libshogun/preprocessor/SortWordString.h
| | D	src/libshogun/preprocessor/SparsePreprocessor.h
| | D	src/libshogun/preprocessor/StringPreprocessor.h
| | D	src/libshogun/regression/KRR.cpp
| | D	src/libshogun/regression/KRR.h
| | D	src/libshogun/regression/Regression.h
| | D	src/libshogun/regression/svr/LibSVR.cpp
| | D	src/libshogun/regression/svr/LibSVR.h
| | D	src/libshogun/regression/svr/MKLRegression.cpp
| | D	src/libshogun/regression/svr/MKLRegression.h
| | D	src/libshogun/regression/svr/SVRLight.cpp
| | D	src/libshogun/regression/svr/SVRLight.h
| | D	src/libshogun/structure/DynProg.cpp
| | D	src/libshogun/structure/DynProg.h
| | D	src/libshogun/structure/IntronList.cpp
| | D	src/libshogun/structure/IntronList.h
| | D	src/libshogun/structure/Plif.cpp
| | D	src/libshogun/structure/Plif.h
| | D	src/libshogun/structure/PlifArray.cpp
| | D	src/libshogun/structure/PlifArray.h
| | D	src/libshogun/structure/PlifBase.h
| | D	src/libshogun/structure/PlifMatrix.cpp
| | D	src/libshogun/structure/PlifMatrix.h
| | D	src/libshogun/structure/SegmentLoss.cpp
| | D	src/libshogun/structure/SegmentLoss.h
| | D	src/libshogunui/GUIClassifier.cpp
| | D	src/libshogunui/GUIClassifier.h
| | D	src/libshogunui/GUICommands.h
| | D	src/libshogunui/GUIDistance.cpp
| | D	src/libshogunui/GUIDistance.h
| | D	src/libshogunui/GUIFeatures.cpp
| | D	src/libshogunui/GUIFeatures.h
| | D	src/libshogunui/GUIHMM.cpp
| | D	src/libshogunui/GUIHMM.h
| | D	src/libshogunui/GUIKernel.cpp
| | D	src/libshogunui/GUIKernel.h
| | D	src/libshogunui/GUILabels.cpp
| | D	src/libshogunui/GUILabels.h
| | D	src/libshogunui/GUIMath.cpp
| | D	src/libshogunui/GUIMath.h
| | D	src/libshogunui/GUIPluginEstimate.cpp
| | D	src/libshogunui/GUIPluginEstimate.h
| | D	src/libshogunui/GUIPreprocessor.cpp
| | D	src/libshogunui/GUIPreprocessor.h
| | D	src/libshogunui/GUISignals.cpp.orig
| | D	src/libshogunui/GUISignals.h
| | D	src/libshogunui/GUIStructure.cpp
| | D	src/libshogunui/GUIStructure.h
| | D	src/libshogunui/GUITime.cpp
| | D	src/libshogunui/GUITime.h
| | D	src/libshogunui/SGInterface.cpp
| | D	src/libshogunui/SGInterface.h
| | D	src/libshogunui/SyntaxHighLight.h
| | D	src/lua_modular/sg_print_functions.cpp
| | D	src/lua_modular/shogun.lua
| | D	src/lua_modular/swig_typemaps.i
| | D	src/matlab/MatlabInterface.cpp
| | D	src/matlab/MatlabInterface.h
| | D	src/octave/OctaveInterface.cpp
| | D	src/octave/OctaveInterface.h
| | D	src/octave_modular/sg_print_functions.cpp
| | D	src/octave_modular/swig_typemaps.i
| | D	src/python/PythonInterface.cpp
| | D	src/python/PythonInterface.h
| | D	src/python_modular/sg_print_functions.cpp
| | D	src/python_modular/swig_typemaps.i
| | D	src/r/RInterface.cpp
| | D	src/r/RInterface.h
| | D	src/r_modular/sg_print_functions.cpp
| | D	src/r_modular/swig_typemaps.i
| | D	src/ruby_modular/sg_print_functions.cpp
| | D	src/ruby_modular/swig_typemaps.i
| | A	src/shogun/base/DynArray.h
| | A	src/shogun/base/Parallel.cpp
| | A	src/shogun/base/Parallel.h
| | A	src/shogun/base/Parameter.cpp
| | A	src/shogun/base/Parameter.h
| | A	src/shogun/base/SGObject.cpp
| | A	src/shogun/base/SGObject.h
| | A	src/shogun/base/Version.cpp
| | A	src/shogun/base/Version.h
| | A	src/shogun/base/class_list.cpp.py
| | A	src/shogun/base/class_list.cpp.templ
| | A	src/shogun/base/class_list.h
| | A	src/shogun/base/init.cpp
| | A	src/shogun/base/init.h
| | A	src/shogun/classifier/AveragedPerceptron.cpp
| | A	src/shogun/classifier/AveragedPerceptron.h
| | A	src/shogun/classifier/GaussianNaiveBayes.cpp
| | A	src/shogun/classifier/GaussianNaiveBayes.h
| | A	src/shogun/classifier/KNN.cpp
| | A	src/shogun/classifier/KNN.h
| | A	src/shogun/classifier/KernelPerceptron.cpp
| | A	src/shogun/classifier/KernelPerceptron.h
| | A	src/shogun/classifier/LDA.cpp
| | A	src/shogun/classifier/LDA.h
| | A	src/shogun/classifier/LPBoost.cpp
| | A	src/shogun/classifier/LPBoost.h
| | A	src/shogun/classifier/LPM.cpp
| | A	src/shogun/classifier/LPM.h
| | A	src/shogun/classifier/Perceptron.cpp
| | A	src/shogun/classifier/Perceptron.h
| | A	src/shogun/classifier/PluginEstimate.cpp
| | A	src/shogun/classifier/PluginEstimate.h
| | A	src/shogun/classifier/SubGradientLPM.cpp
| | A	src/shogun/classifier/SubGradientLPM.h
| | A	src/shogun/classifier/__init__.py
| | A	src/shogun/classifier/mkl/MKL.cpp
| | A	src/shogun/classifier/mkl/MKL.h
| | A	src/shogun/classifier/mkl/MKLClassification.cpp
| | A	src/shogun/classifier/mkl/MKLClassification.h
| | A	src/shogun/classifier/mkl/MKLMultiClass.cpp
| | A	src/shogun/classifier/mkl/MKLMultiClass.h
| | A	src/shogun/classifier/mkl/MKLMultiClassGLPK.cpp
| | A	src/shogun/classifier/mkl/MKLMultiClassGLPK.h
| | A	src/shogun/classifier/mkl/MKLMultiClassGradient.cpp
| | A	src/shogun/classifier/mkl/MKLMultiClassGradient.h
| | A	src/shogun/classifier/mkl/MKLMultiClassOptimizationBase.cpp
| | A	src/shogun/classifier/mkl/MKLMultiClassOptimizationBase.h
| | A	src/shogun/classifier/mkl/MKLOneClass.cpp
| | A	src/shogun/classifier/mkl/MKLOneClass.h
| | A	src/shogun/classifier/svm/CPLEXSVM.cpp
| | A	src/shogun/classifier/svm/CPLEXSVM.h
| | A	src/shogun/classifier/svm/DomainAdaptationSVM.cpp
| | A	src/shogun/classifier/svm/DomainAdaptationSVM.h
| | A	src/shogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | A	src/shogun/classifier/svm/DomainAdaptationSVMLinear.h
| | A	src/shogun/classifier/svm/GMNPLib.cpp
| | A	src/shogun/classifier/svm/GMNPLib.h
| | A	src/shogun/classifier/svm/GMNPSVM.cpp
| | A	src/shogun/classifier/svm/GMNPSVM.h
| | A	src/shogun/classifier/svm/GNPPLib.cpp
| | A	src/shogun/classifier/svm/GNPPLib.h
| | A	src/shogun/classifier/svm/GNPPSVM.cpp
| | A	src/shogun/classifier/svm/GNPPSVM.h
| | A	src/shogun/classifier/svm/GPBTSVM.cpp
| | A	src/shogun/classifier/svm/GPBTSVM.h
| | A	src/shogun/classifier/svm/LaRank.cpp
| | A	src/shogun/classifier/svm/LaRank.h
| | A	src/shogun/classifier/svm/LibLinear.cpp
| | A	src/shogun/classifier/svm/LibLinear.h
| | A	src/shogun/classifier/svm/LibSVM.cpp
| | A	src/shogun/classifier/svm/LibSVM.h
| | A	src/shogun/classifier/svm/LibSVMMultiClass.cpp
| | A	src/shogun/classifier/svm/LibSVMMultiClass.h
| | A	src/shogun/classifier/svm/LibSVMOneClass.cpp
| | A	src/shogun/classifier/svm/LibSVMOneClass.h
| | A	src/shogun/classifier/svm/MPDSVM.cpp
| | A	src/shogun/classifier/svm/MPDSVM.h
| | A	src/shogun/classifier/svm/MultiClassSVM.cpp
| | A	src/shogun/classifier/svm/MultiClassSVM.h
| | A	src/shogun/classifier/svm/OnlineLibLinear.cpp
| | A	src/shogun/classifier/svm/OnlineLibLinear.h
| | A	src/shogun/classifier/svm/OnlineSVMSGD.cpp
| | A	src/shogun/classifier/svm/OnlineSVMSGD.h
| | A	src/shogun/classifier/svm/QPBSVMLib.cpp
| | A	src/shogun/classifier/svm/QPBSVMLib.h
| | A	src/shogun/classifier/svm/SGDQN.cpp
| | A	src/shogun/classifier/svm/SGDQN.h
| | A	src/shogun/classifier/svm/SVM.cpp
| | A	src/shogun/classifier/svm/SVM.h
| | A	src/shogun/classifier/svm/SVMLight.cpp
| | A	src/shogun/classifier/svm/SVMLight.h
| | A	src/shogun/classifier/svm/SVMLightOneClass.cpp
| | A	src/shogun/classifier/svm/SVMLightOneClass.h
| | A	src/shogun/classifier/svm/SVMLin.cpp
| | A	src/shogun/classifier/svm/SVMLin.h
| | A	src/shogun/classifier/svm/SVMOcas.cpp
| | A	src/shogun/classifier/svm/SVMOcas.h
| | A	src/shogun/classifier/svm/SVMSGD.cpp
| | A	src/shogun/classifier/svm/SVMSGD.h
| | A	src/shogun/classifier/svm/SVM_libsvm.cpp
| | A	src/shogun/classifier/svm/SVM_libsvm.h
| | A	src/shogun/classifier/svm/SVM_linear.cpp
| | A	src/shogun/classifier/svm/SVM_linear.h
| | A	src/shogun/classifier/svm/ScatterSVM.cpp
| | A	src/shogun/classifier/svm/ScatterSVM.h
| | A	src/shogun/classifier/svm/SubGradientSVM.cpp
| | A	src/shogun/classifier/svm/SubGradientSVM.h
| | A	src/shogun/classifier/svm/Tron.cpp
| | A	src/shogun/classifier/svm/Tron.h
| | A	src/shogun/classifier/svm/WDSVMOcas.cpp
| | A	src/shogun/classifier/svm/WDSVMOcas.h
| | A	src/shogun/classifier/svm/__init__.py
| | A	src/shogun/classifier/svm/gpdt.cpp
| | A	src/shogun/classifier/svm/gpdt.h
| | A	src/shogun/classifier/svm/gpdtsolve.cpp
| | A	src/shogun/classifier/svm/gpdtsolve.h
| | A	src/shogun/classifier/svm/gpm.cpp
| | A	src/shogun/classifier/svm/gpm.h
| | A	src/shogun/classifier/svm/libocas.cpp
| | A	src/shogun/classifier/svm/libocas.h
| | A	src/shogun/classifier/svm/libocas_common.h
| | A	src/shogun/classifier/svm/libqp.h
| | A	src/shogun/classifier/svm/libqp_splx.cpp
| | A	src/shogun/classifier/svm/pr_loqo.cpp
| | A	src/shogun/classifier/svm/pr_loqo.h
| | A	src/shogun/classifier/svm/ssl.cpp
| | A	src/shogun/classifier/svm/ssl.h
| | A	src/shogun/clustering/GMM.cpp
| | A	src/shogun/clustering/GMM.h
| | A	src/shogun/clustering/Hierarchical.cpp
| | A	src/shogun/clustering/Hierarchical.h
| | A	src/shogun/clustering/KMeans.cpp
| | A	src/shogun/clustering/KMeans.h
| | A	src/shogun/distance/AttenuatedEuclidianDistance.cpp
| | A	src/shogun/distance/AttenuatedEuclidianDistance.h
| | A	src/shogun/distance/BrayCurtisDistance.cpp
| | A	src/shogun/distance/BrayCurtisDistance.h
| | A	src/shogun/distance/CanberraMetric.cpp
| | A	src/shogun/distance/CanberraMetric.h
| | A	src/shogun/distance/CanberraWordDistance.cpp
| | A	src/shogun/distance/CanberraWordDistance.h
| | A	src/shogun/distance/ChebyshewMetric.cpp
| | A	src/shogun/distance/ChebyshewMetric.h
| | A	src/shogun/distance/ChiSquareDistance.cpp
| | A	src/shogun/distance/ChiSquareDistance.h
| | A	src/shogun/distance/CosineDistance.cpp
| | A	src/shogun/distance/CosineDistance.h
| | A	src/shogun/distance/CustomDistance.cpp
| | A	src/shogun/distance/CustomDistance.h
| | A	src/shogun/distance/Distance.cpp
| | A	src/shogun/distance/Distance.h
| | A	src/shogun/distance/EuclidianDistance.cpp
| | A	src/shogun/distance/EuclidianDistance.h
| | A	src/shogun/distance/GeodesicMetric.cpp
| | A	src/shogun/distance/GeodesicMetric.h
| | A	src/shogun/distance/HammingWordDistance.cpp
| | A	src/shogun/distance/HammingWordDistance.h
| | A	src/shogun/distance/JensenMetric.cpp
| | A	src/shogun/distance/JensenMetric.h
| | A	src/shogun/distance/KernelDistance.cpp
| | A	src/shogun/distance/KernelDistance.h
| | A	src/shogun/distance/ManhattanMetric.cpp
| | A	src/shogun/distance/ManhattanMetric.h
| | A	src/shogun/distance/ManhattanWordDistance.cpp
| | A	src/shogun/distance/ManhattanWordDistance.h
| | A	src/shogun/distance/MinkowskiMetric.cpp
| | A	src/shogun/distance/MinkowskiMetric.h
| | A	src/shogun/distance/RealDistance.h
| | A	src/shogun/distance/SimpleDistance.h
| | A	src/shogun/distance/SparseDistance.h
| | A	src/shogun/distance/SparseEuclidianDistance.cpp
| | A	src/shogun/distance/SparseEuclidianDistance.h
| | A	src/shogun/distance/StringDistance.h
| | A	src/shogun/distance/TanimotoDistance.cpp
| | A	src/shogun/distance/TanimotoDistance.h
| | A	src/shogun/distributions/Distribution.cpp
| | A	src/shogun/distributions/Distribution.h
| | A	src/shogun/distributions/GHMM.cpp
| | A	src/shogun/distributions/GHMM.h
| | A	src/shogun/distributions/Gaussian.cpp
| | A	src/shogun/distributions/Gaussian.h
| | A	src/shogun/distributions/HMM.cpp
| | A	src/shogun/distributions/HMM.h
| | A	src/shogun/distributions/Histogram.cpp
| | A	src/shogun/distributions/Histogram.h
| | A	src/shogun/distributions/LinearHMM.cpp
| | A	src/shogun/distributions/LinearHMM.h
| | A	src/shogun/distributions/PositionalPWM.cpp
| | A	src/shogun/distributions/PositionalPWM.h
| | A	src/shogun/evaluation/BinaryClassEvaluation.h
| | A	src/shogun/evaluation/ContingencyTableEvaluation.cpp
| | A	src/shogun/evaluation/ContingencyTableEvaluation.h
| | A	src/shogun/evaluation/CrossValidation.cpp
| | A	src/shogun/evaluation/CrossValidation.h
| | A	src/shogun/evaluation/Evaluation.h
| | A	src/shogun/evaluation/MeanSquaredError.cpp
| | A	src/shogun/evaluation/MeanSquaredError.h
| | A	src/shogun/evaluation/MulticlassAccuracy.cpp
| | A	src/shogun/evaluation/MulticlassAccuracy.h
| | A	src/shogun/evaluation/PRCEvaluation.cpp
| | A	src/shogun/evaluation/PRCEvaluation.h
| | A	src/shogun/evaluation/ROCEvaluation.cpp
| | A	src/shogun/evaluation/ROCEvaluation.h
| | A	src/shogun/evaluation/SplittingStrategy.cpp
| | A	src/shogun/evaluation/SplittingStrategy.h
| | A	src/shogun/evaluation/StratifiedCrossValidationSplitting.cpp
| | A	src/shogun/evaluation/StratifiedCrossValidationSplitting.h
| | A	src/shogun/features/Alphabet.cpp
| | A	src/shogun/features/Alphabet.h
| | A	src/shogun/features/AttributeFeatures.cpp
| | A	src/shogun/features/AttributeFeatures.h
| | A	src/shogun/features/CombinedDotFeatures.cpp
| | A	src/shogun/features/CombinedDotFeatures.h
| | A	src/shogun/features/CombinedFeatures.cpp
| | A	src/shogun/features/CombinedFeatures.h
| | A	src/shogun/features/DotFeatures.cpp
| | A	src/shogun/features/DotFeatures.h
| | A	src/shogun/features/DummyFeatures.h
| | A	src/shogun/features/ExplicitSpecFeatures.cpp
| | A	src/shogun/features/ExplicitSpecFeatures.h
| | A	src/shogun/features/FKFeatures.cpp
| | A	src/shogun/features/FKFeatures.h
| | A	src/shogun/features/FeatureTypes.h
| | A	src/shogun/features/Features.cpp
| | A	src/shogun/features/Features.h
| | A	src/shogun/features/HashedWDFeatures.cpp
| | A	src/shogun/features/HashedWDFeatures.h
| | A	src/shogun/features/HashedWDFeaturesTransposed.cpp
| | A	src/shogun/features/HashedWDFeaturesTransposed.h
| | A	src/shogun/features/ImplicitWeightedSpecFeatures.cpp
| | A	src/shogun/features/ImplicitWeightedSpecFeatures.h
| | A	src/shogun/features/LBPPyrDotFeatures.cpp
| | A	src/shogun/features/LBPPyrDotFeatures.h
| | A	src/shogun/features/Labels.cpp
| | A	src/shogun/features/Labels.h
| | A	src/shogun/features/PolyFeatures.cpp
| | A	src/shogun/features/PolyFeatures.h
| | A	src/shogun/features/RealFileFeatures.cpp
| | A	src/shogun/features/RealFileFeatures.h
| | A	src/shogun/features/SNPFeatures.cpp
| | A	src/shogun/features/SNPFeatures.h
| | A	src/shogun/features/SimpleFeatures.h
| | A	src/shogun/features/SparseFeatures.h
| | A	src/shogun/features/SparsePolyFeatures.cpp
| | A	src/shogun/features/SparsePolyFeatures.h
| | A	src/shogun/features/StreamingDotFeatures.h
| | A	src/shogun/features/StreamingFeatures.h
| | A	src/shogun/features/StreamingSimpleFeatures.h
| | A	src/shogun/features/StreamingSparseFeatures.h
| | A	src/shogun/features/StreamingStringFeatures.h
| | A	src/shogun/features/StringFeatures.h
| | A	src/shogun/features/StringFileFeatures.h
| | A	src/shogun/features/Subset.cpp
| | A	src/shogun/features/Subset.h
| | A	src/shogun/features/TOPFeatures.cpp
| | A	src/shogun/features/TOPFeatures.h
| | A	src/shogun/features/WDFeatures.cpp
| | A	src/shogun/features/WDFeatures.h
| | A	src/shogun/features/__init__.py
| | A	src/shogun/kernel/ANOVAKernel.cpp
| | A	src/shogun/kernel/ANOVAKernel.h
| | A	src/shogun/kernel/AUCKernel.cpp
| | A	src/shogun/kernel/AUCKernel.h
| | A	src/shogun/kernel/AvgDiagKernelNormalizer.h
| | A	src/shogun/kernel/BesselKernel.cpp
| | A	src/shogun/kernel/BesselKernel.h
| | A	src/shogun/kernel/CauchyKernel.cpp
| | A	src/shogun/kernel/CauchyKernel.h
| | A	src/shogun/kernel/Chi2Kernel.cpp
| | A	src/shogun/kernel/Chi2Kernel.h
| | A	src/shogun/kernel/CircularKernel.cpp
| | A	src/shogun/kernel/CircularKernel.h
| | A	src/shogun/kernel/CombinedKernel.cpp
| | A	src/shogun/kernel/CombinedKernel.h
| | A	src/shogun/kernel/CommUlongStringKernel.cpp
| | A	src/shogun/kernel/CommUlongStringKernel.h
| | A	src/shogun/kernel/CommWordStringKernel.cpp
| | A	src/shogun/kernel/CommWordStringKernel.h
| | A	src/shogun/kernel/ConstKernel.cpp
| | A	src/shogun/kernel/ConstKernel.h
| | A	src/shogun/kernel/CustomKernel.cpp
| | A	src/shogun/kernel/CustomKernel.h
| | A	src/shogun/kernel/DiagKernel.cpp
| | A	src/shogun/kernel/DiagKernel.h
| | A	src/shogun/kernel/DiceKernelNormalizer.h
| | A	src/shogun/kernel/DistanceKernel.cpp
| | A	src/shogun/kernel/DistanceKernel.h
| | A	src/shogun/kernel/DistantSegmentsKernel.cpp
| | A	src/shogun/kernel/DistantSegmentsKernel.h
| | A	src/shogun/kernel/DotKernel.h
| | A	src/shogun/kernel/ExponentialKernel.cpp
| | A	src/shogun/kernel/ExponentialKernel.h
| | A	src/shogun/kernel/FirstElementKernelNormalizer.h
| | A	src/shogun/kernel/FixedDegreeStringKernel.cpp
| | A	src/shogun/kernel/FixedDegreeStringKernel.h
| | A	src/shogun/kernel/GaussianKernel.cpp
| | A	src/shogun/kernel/GaussianKernel.h
| | A	src/shogun/kernel/GaussianMatchStringKernel.cpp
| | A	src/shogun/kernel/GaussianMatchStringKernel.h
| | A	src/shogun/kernel/GaussianShiftKernel.cpp
| | A	src/shogun/kernel/GaussianShiftKernel.h
| | A	src/shogun/kernel/GaussianShortRealKernel.cpp
| | A	src/shogun/kernel/GaussianShortRealKernel.h
| | A	src/shogun/kernel/HistogramIntersectionKernel.cpp
| | A	src/shogun/kernel/HistogramIntersectionKernel.h
| | A	src/shogun/kernel/HistogramWordStringKernel.cpp
| | A	src/shogun/kernel/HistogramWordStringKernel.h
| | A	src/shogun/kernel/IdentityKernelNormalizer.h
| | A	src/shogun/kernel/InverseMultiQuadricKernel.cpp
| | A	src/shogun/kernel/InverseMultiQuadricKernel.h
| | A	src/shogun/kernel/Kernel.cpp
| | A	src/shogun/kernel/Kernel.h
| | A	src/shogun/kernel/KernelNormalizer.h
| | A	src/shogun/kernel/LinearKernel.cpp
| | A	src/shogun/kernel/LinearKernel.h
| | A	src/shogun/kernel/LinearStringKernel.cpp
| | A	src/shogun/kernel/LinearStringKernel.h
| | A	src/shogun/kernel/LocalAlignmentStringKernel.cpp
| | A	src/shogun/kernel/LocalAlignmentStringKernel.h
| | A	src/shogun/kernel/LocalityImprovedStringKernel.cpp
| | A	src/shogun/kernel/LocalityImprovedStringKernel.h
| | A	src/shogun/kernel/LogKernel.cpp
| | A	src/shogun/kernel/LogKernel.h
| | A	src/shogun/kernel/MatchWordStringKernel.cpp
| | A	src/shogun/kernel/MatchWordStringKernel.h
| | A	src/shogun/kernel/MultiquadricKernel.cpp
| | A	src/shogun/kernel/MultiquadricKernel.h
| | A	src/shogun/kernel/MultitaskKernelMaskNormalizer.h
| | A	src/shogun/kernel/MultitaskKernelMaskPairNormalizer.h
| | A	src/shogun/kernel/MultitaskKernelMklNormalizer.h
| | A	src/shogun/kernel/MultitaskKernelNormalizer.h
| | A	src/shogun/kernel/MultitaskKernelPlifNormalizer.h
| | A	src/shogun/kernel/MultitaskKernelTreeNormalizer.h
| | A	src/shogun/kernel/OligoStringKernel.cpp
| | A	src/shogun/kernel/OligoStringKernel.h
| | A	src/shogun/kernel/PolyKernel.cpp
| | A	src/shogun/kernel/PolyKernel.h
| | A	src/shogun/kernel/PolyMatchStringKernel.cpp
| | A	src/shogun/kernel/PolyMatchStringKernel.h
| | A	src/shogun/kernel/PolyMatchWordStringKernel.cpp
| | A	src/shogun/kernel/PolyMatchWordStringKernel.h
| | A	src/shogun/kernel/PowerKernel.cpp
| | A	src/shogun/kernel/PowerKernel.h
| | A	src/shogun/kernel/PyramidChi2.cpp
| | A	src/shogun/kernel/PyramidChi2.h
| | A	src/shogun/kernel/RationalQuadraticKernel.cpp
| | A	src/shogun/kernel/RationalQuadraticKernel.h
| | A	src/shogun/kernel/RegulatoryModulesStringKernel.cpp
| | A	src/shogun/kernel/RegulatoryModulesStringKernel.h
| | A	src/shogun/kernel/RidgeKernelNormalizer.h
| | A	src/shogun/kernel/SNPStringKernel.cpp
| | A	src/shogun/kernel/SNPStringKernel.h
| | A	src/shogun/kernel/SalzbergWordStringKernel.cpp
| | A	src/shogun/kernel/SalzbergWordStringKernel.h
| | A	src/shogun/kernel/ScatterKernelNormalizer.h
| | A	src/shogun/kernel/SigmoidKernel.cpp
| | A	src/shogun/kernel/SigmoidKernel.h
| | A	src/shogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| | A	src/shogun/kernel/SimpleLocalityImprovedStringKernel.h
| | A	src/shogun/kernel/SparseKernel.h
| | A	src/shogun/kernel/SparseSpatialSampleStringKernel.cpp
| | A	src/shogun/kernel/SparseSpatialSampleStringKernel.h
| | A	src/shogun/kernel/SpectrumMismatchRBFKernel.cpp
| | A	src/shogun/kernel/SpectrumMismatchRBFKernel.h
| | A	src/shogun/kernel/SpectrumRBFKernel.cpp
| | A	src/shogun/kernel/SpectrumRBFKernel.h
| | A	src/shogun/kernel/SphericalKernel.cpp
| | A	src/shogun/kernel/SphericalKernel.h
| | A	src/shogun/kernel/SplineKernel.cpp
| | A	src/shogun/kernel/SplineKernel.h
| | A	src/shogun/kernel/SqrtDiagKernelNormalizer.h
| | A	src/shogun/kernel/StringKernel.h
| | A	src/shogun/kernel/TStudentKernel.cpp
| | A	src/shogun/kernel/TStudentKernel.h
| | A	src/shogun/kernel/TanimotoKernelNormalizer.h
| | A	src/shogun/kernel/TensorProductPairKernel.cpp
| | A	src/shogun/kernel/TensorProductPairKernel.h
| | A	src/shogun/kernel/VarianceKernelNormalizer.h
| | A	src/shogun/kernel/WaveKernel.cpp
| | A	src/shogun/kernel/WaveKernel.h
| | A	src/shogun/kernel/WaveletKernel.cpp
| | A	src/shogun/kernel/WaveletKernel.h
| | A	src/shogun/kernel/WeightedCommWordStringKernel.cpp
| | A	src/shogun/kernel/WeightedCommWordStringKernel.h
| | A	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | A	src/shogun/kernel/WeightedDegreePositionStringKernel.h
| | A	src/shogun/kernel/WeightedDegreeRBFKernel.cpp
| | A	src/shogun/kernel/WeightedDegreeRBFKernel.h
| | A	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | A	src/shogun/kernel/WeightedDegreeStringKernel.h
| | A	src/shogun/kernel/ZeroMeanCenterKernelNormalizer.h
| | A	src/shogun/kernel/__init__.py
| | A	src/shogun/lib/Array.h
| | A	src/shogun/lib/Array2.h
| | A	src/shogun/lib/Array3.h
| | A	src/shogun/lib/AsciiFile.cpp
| | A	src/shogun/lib/AsciiFile.h
| | A	src/shogun/lib/BinaryFile.cpp
| | A	src/shogun/lib/BinaryFile.h
| | A	src/shogun/lib/BinaryStream.h
| | A	src/shogun/lib/BitString.h
| | A	src/shogun/lib/Cache.h
| | A	src/shogun/lib/Compressor.cpp
| | A	src/shogun/lib/Compressor.h
| | A	src/shogun/lib/Cplex.cpp
| | A	src/shogun/lib/Cplex.h
| | A	src/shogun/lib/DataType.cpp
| | A	src/shogun/lib/DataType.h
| | A	src/shogun/lib/DynInt.h
| | A	src/shogun/lib/DynamicArray.h
| | A	src/shogun/lib/DynamicObjectArray.h
| | A	src/shogun/lib/File.cpp
| | A	src/shogun/lib/File.h
| | A	src/shogun/lib/GCArray.h
| | A	src/shogun/lib/HDF5File.cpp
| | A	src/shogun/lib/HDF5File.h
| | A	src/shogun/lib/Hash.cpp
| | A	src/shogun/lib/Hash.h
| | A	src/shogun/lib/IOBuffer.cpp
| | A	src/shogun/lib/IOBuffer.h
| | A	src/shogun/lib/IndirectObject.h
| | A	src/shogun/lib/InputParser.h
| | A	src/shogun/lib/LibSVMFile.h
| | A	src/shogun/lib/List.h
| | A	src/shogun/lib/Loss.h
| | A	src/shogun/lib/Mathematics.cpp
| | A	src/shogun/lib/Mathematics.h
| | A	src/shogun/lib/MemoryMappedFile.h
| | A	src/shogun/lib/ParseBuffer.h
| | A	src/shogun/lib/SerializableAsciiFile.cpp
| | A	src/shogun/lib/SerializableAsciiFile.h
| | A	src/shogun/lib/SerializableAsciiReader00.cpp
| | A	src/shogun/lib/SerializableAsciiReader00.h
| | A	src/shogun/lib/SerializableFile.cpp
| | A	src/shogun/lib/SerializableFile.h
| | A	src/shogun/lib/SerializableHdf5File.cpp
| | A	src/shogun/lib/SerializableHdf5File.h
| | A	src/shogun/lib/SerializableHdf5Reader00.cpp
| | A	src/shogun/lib/SerializableHdf5Reader00.h
| | A	src/shogun/lib/SerializableJsonFile.cpp
| | A	src/shogun/lib/SerializableJsonFile.h
| | A	src/shogun/lib/SerializableJsonReader00.cpp
| | A	src/shogun/lib/SerializableJsonReader00.h
| | A	src/shogun/lib/SerializableXmlFile.cpp
| | A	src/shogun/lib/SerializableXmlFile.h
| | A	src/shogun/lib/SerializableXmlReader00.cpp
| | A	src/shogun/lib/SerializableXmlReader00.h
| | A	src/shogun/lib/Set.h
| | A	src/shogun/lib/ShogunException.cpp
| | A	src/shogun/lib/ShogunException.h
| | A	src/shogun/lib/Signal.cpp
| | A	src/shogun/lib/Signal.h
| | A	src/shogun/lib/SimpleFile.h
| | A	src/shogun/lib/StreamingAsciiFile.cpp
| | A	src/shogun/lib/StreamingAsciiFile.h
| | A	src/shogun/lib/StreamingFile.cpp
| | A	src/shogun/lib/StreamingFile.h
| | A	src/shogun/lib/StreamingFileFromFeatures.cpp
| | A	src/shogun/lib/StreamingFileFromFeatures.h
| | A	src/shogun/lib/StreamingFileFromSimpleFeatures.h
| | A	src/shogun/lib/StreamingFileFromSparseFeatures.h
| | A	src/shogun/lib/StreamingFileFromStringFeatures.h
| | A	src/shogun/lib/Time.cpp
| | A	src/shogun/lib/Time.h
| | A	src/shogun/lib/Trie.cpp
| | A	src/shogun/lib/Trie.h
| | A	src/shogun/lib/__init__.py
| | A	src/shogun/lib/arpack.cpp
| | A	src/shogun/lib/arpack.h
| | A	src/shogun/lib/common.h
| | A	src/shogun/lib/io.cpp
| | A	src/shogun/lib/io.h
| | A	src/shogun/lib/lapack.cpp
| | A	src/shogun/lib/lapack.h
| | A	src/shogun/lib/memory.cpp
| | A	src/shogun/lib/memory.h
| | A	src/shogun/lib/v_array.h
| | A	src/shogun/machine/DistanceMachine.cpp
| | A	src/shogun/machine/DistanceMachine.h
| | A	src/shogun/machine/KernelMachine.cpp
| | A	src/shogun/machine/KernelMachine.h
| | A	src/shogun/machine/LinearMachine.cpp
| | A	src/shogun/machine/LinearMachine.h
| | A	src/shogun/machine/Machine.cpp
| | A	src/shogun/machine/Machine.h
| | A	src/shogun/machine/OnlineLinearMachine.cpp
| | A	src/shogun/machine/OnlineLinearMachine.h
| | A	src/shogun/modelselection/GridSearchModelSelection.cpp
| | A	src/shogun/modelselection/GridSearchModelSelection.h
| | A	src/shogun/modelselection/ModelSelection.cpp
| | A	src/shogun/modelselection/ModelSelection.h
| | A	src/shogun/modelselection/ModelSelectionParameters.cpp
| | A	src/shogun/modelselection/ModelSelectionParameters.h
| | A	src/shogun/modelselection/ParameterCombination.cpp
| | A	src/shogun/modelselection/ParameterCombination.h
| | A	src/shogun/preprocessor/ClassicIsomap.h
| | A	src/shogun/preprocessor/ClassicMDS.cpp
| | A	src/shogun/preprocessor/ClassicMDS.h
| | A	src/shogun/preprocessor/DecompressString.h
| | A	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| | A	src/shogun/preprocessor/Isomap.h
| | A	src/shogun/preprocessor/KernelPCACut.cpp
| | A	src/shogun/preprocessor/KernelPCACut.h
| | A	src/shogun/preprocessor/LandmarkIsomap.h
| | A	src/shogun/preprocessor/LandmarkMDS.cpp
| | A	src/shogun/preprocessor/LandmarkMDS.h
| | A	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | A	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | A	src/shogun/preprocessor/LogPlusOne.cpp
| | A	src/shogun/preprocessor/LogPlusOne.h
| | A	src/shogun/preprocessor/NormOne.cpp
| | A	src/shogun/preprocessor/NormOne.h
| | A	src/shogun/preprocessor/PCA.cpp
| | A	src/shogun/preprocessor/PCA.h
| | A	src/shogun/preprocessor/Preprocessor.cpp
| | A	src/shogun/preprocessor/Preprocessor.h
| | A	src/shogun/preprocessor/PruneVarSubMean.cpp
| | A	src/shogun/preprocessor/PruneVarSubMean.h
| | A	src/shogun/preprocessor/RandomFourierGaussPreproc.cpp
| | A	src/shogun/preprocessor/RandomFourierGaussPreproc.h
| | A	src/shogun/preprocessor/SimplePreprocessor.h
| | A	src/shogun/preprocessor/SortUlongString.cpp
| | A	src/shogun/preprocessor/SortUlongString.h
| | A	src/shogun/preprocessor/SortWordString.cpp
| | A	src/shogun/preprocessor/SortWordString.h
| | A	src/shogun/preprocessor/SparsePreprocessor.h
| | A	src/shogun/preprocessor/StringPreprocessor.h
| | A	src/shogun/regression/KRR.cpp
| | A	src/shogun/regression/KRR.h
| | A	src/shogun/regression/Regression.h
| | A	src/shogun/regression/svr/LibSVR.cpp
| | A	src/shogun/regression/svr/LibSVR.h
| | A	src/shogun/regression/svr/MKLRegression.cpp
| | A	src/shogun/regression/svr/MKLRegression.h
| | A	src/shogun/regression/svr/SVRLight.cpp
| | A	src/shogun/regression/svr/SVRLight.h
| | A	src/shogun/structure/DynProg.cpp
| | A	src/shogun/structure/DynProg.h
| | A	src/shogun/structure/IntronList.cpp
| | A	src/shogun/structure/IntronList.h
| | A	src/shogun/structure/Plif.cpp
| | A	src/shogun/structure/Plif.h
| | A	src/shogun/structure/PlifArray.cpp
| | A	src/shogun/structure/PlifArray.h
| | A	src/shogun/structure/PlifBase.h
| | A	src/shogun/structure/PlifMatrix.cpp
| | A	src/shogun/structure/PlifMatrix.h
| | A	src/shogun/structure/SegmentLoss.cpp
| | A	src/shogun/structure/SegmentLoss.h
| | A	src/shogun/ui/GUIClassifier.cpp
| | A	src/shogun/ui/GUIClassifier.h
| | A	src/shogun/ui/GUICommands.h
| | A	src/shogun/ui/GUIDistance.cpp
| | A	src/shogun/ui/GUIDistance.h
| | A	src/shogun/ui/GUIFeatures.cpp
| | A	src/shogun/ui/GUIFeatures.h
| | A	src/shogun/ui/GUIHMM.cpp
| | A	src/shogun/ui/GUIHMM.h
| | A	src/shogun/ui/GUIKernel.cpp
| | A	src/shogun/ui/GUIKernel.h
| | A	src/shogun/ui/GUILabels.cpp
| | A	src/shogun/ui/GUILabels.h
| | A	src/shogun/ui/GUIMath.cpp
| | A	src/shogun/ui/GUIMath.h
| | A	src/shogun/ui/GUIPluginEstimate.cpp
| | A	src/shogun/ui/GUIPluginEstimate.h
| | A	src/shogun/ui/GUIPreprocessor.cpp
| | A	src/shogun/ui/GUIPreprocessor.h
| | A	src/shogun/ui/GUISignals.cpp.orig
| | A	src/shogun/ui/GUISignals.h
| | A	src/shogun/ui/GUIStructure.cpp
| | A	src/shogun/ui/GUIStructure.h
| | A	src/shogun/ui/GUITime.cpp
| | A	src/shogun/ui/GUITime.h
| | A	src/shogun/ui/SGInterface.cpp
| | A	src/shogun/ui/SGInterface.h
| | A	src/shogun/ui/SyntaxHighLight.h
| |   
* | commit 96b067db1f7aaadca49ded0e00c4c6455318eb95
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Jul 17 21:33:48 2011 +0200
| | 
| |     potential java pragmas to derive from Serializable
| | 
| | M	src/modular/SGBase.i
| |   
* | commit 90da60c9a979c3dd89597489a02cbf2815eafb90
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Jul 17 21:28:16 2011 +0200
| | 
| |     some poim ppwm test code
| | 
| | M	examples/undocumented/python_modular/distribution_ppwm_modular.py
| |   
* | commit 6baeb64e3bfed49b75d9783ced984397a624c48a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Jul 17 21:27:53 2011 +0200
| | 
| |     some more work on poims for ppwm
| | 
| | M	src/libshogun/distributions/PositionalPWM.cpp
| | M	src/libshogun/distributions/PositionalPWM.h
| |   
* | commit 3de2daa7a2a1cfe4b3aaa4f272b70e6f08f0dc85
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Jul 17 21:26:46 2011 +0200
| | 
| |     make function return void
| | 
| | M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| | M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| |   
* | commit 4d12457a7f284cde001b9683b9ba74110915625f
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Jul 17 01:20:02 2011 +0400
| | 
| |     Removed unnecessary java example minimal_test
| | 
| | D	examples/undocumented/java_modular/minimal_test.java
| |   
* | commit 887dcc89b982d23cabaf9e7da8e998e9dc42938f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Jul 16 11:38:27 2011 +0200
| | 
| |     fix java install
| | 
| | M	src/Makefile.template
| |     
* |   commit 3e6d26092a63ca178c512e81bdb78a86418e1b1e
|\ \  Merge: 32a8bd0 563058f
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sat Jul 16 02:24:45 2011 -0700
| | | 
| | |     Merge pull request #205 from frx/streaming_1
| | |     
| | |     Added updating of current_num_features for StreamingSparseFeatures.
| | |    
| * | commit 563058f206dde0bdbbdc76ea3b91eca9b8b1a694
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sat Jul 16 10:05:48 2011 +0530
| | | 
| | |     Modified bias scale value in SGD. Updated loss function to be the default used in the original svmsgd2.
| | | 
| | | M	src/libshogun/classifier/svm/OnlineSVMSGD.cpp
| | | M	src/libshogun/classifier/svm/SVMSGD.cpp
| | |    
| * | commit 8f1ed0d661845de84697e470793752d6020df472
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Fri Jul 15 20:28:29 2011 +0530
| | | 
| | |     Added braces around for loop.
| | | 
| | | M	src/libshogun/features/StreamingSparseFeatures.h
| | |    
| * | commit ca17a156463f2711d4f2a31b891b925d94e6b718
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Fri Jul 15 20:18:04 2011 +0530
| |   
| |       Added updating of current_num_features for StreamingSparseFeatures.
| |   
| |   M	src/libshogun/features/StreamingSparseFeatures.h
| |   
* | commit 32a8bd092d4d9bcaa07a64902ae1590fb7db3d41
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Jul 16 00:04:30 2011 +0400
| | 
| |     Renamed and cleaned PCA
| | 
| | A	examples/undocumented/python_modular/preprocessor_pca_modular.py
| | D	examples/undocumented/python_modular/preprocessor_pcacut_modular.py
| | A	src/libshogun/preprocessor/PCA.cpp
| | A	src/libshogun/preprocessor/PCA.h
| | D	src/libshogun/preprocessor/PCACut.cpp
| | D	src/libshogun/preprocessor/PCACut.h
| | M	src/libshogun/preprocessor/Preprocessor.h
| | M	src/libshogunui/GUIPreprocessor.cpp
| | M	src/libshogunui/GUIPreprocessor.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/modular/Preprocessor.i
| | M	src/modular/Preprocessor_includes.i
| |     
* |   commit d531d4c096f6ece5daf73e6614bb6b37f341a7ed
|\ \  Merge: 377c55b c28e5bf
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jul 15 16:19:12 2011 +0200
| | | 
| | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | |      
| * |   commit c28e5bfb22818626e54877bda89484294a40734f
| |\ \  Merge: 1d5de60 6609713
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Jul 15 05:45:39 2011 -0700
| | | | 
| | | |     Merge pull request #204 from sploving/master
| | | |     
| | | |     fix some bug
| | | |     
| | * | commit 6609713ef50874951ec56e764a011aa659dfe3cf
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 15 19:33:49 2011 +0800
| | | | 
| | | |     SVMLight cannot serializated in Java
| | | | 
| | | | M	examples/undocumented/java_modular/serialization_svmlight_modular.java
| | | |     
| | * | commit 5cf4afec4955b8f0a7ec2e022ad78772bbb6c4a7
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 15 19:32:18 2011 +0800
| | | | 
| | | |     fix some small bug
| | | | 
| | | | M	examples/undocumented/java_modular/classifier_averaged_perceptron_modular.java
| | | | M	examples/undocumented/java_modular/kernel_weighted_degree_position_string_modular.java
| | | |     
* | | | commit 377c55ba9ed01676e0fe47a47328b87a512d56d7
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Fri Jul 15 16:18:21 2011 +0200
| | |   
| | |       fix a few more java examples ... even more includes
| | |   
| | |   M	src/modular/Clustering.i
| | |   M	src/modular/Distance.i
| | |   M	src/modular/Distribution.i
| | |   M	src/modular/Evaluation.i
| | |   M	src/modular/Features.i
| | |   M	src/modular/Kernel.i
| | |   M	src/modular/Preprocessor.i
| | |   M	src/modular/Structure.i
| | |      
* | |   commit 1d5de600e6993ad9c0d36006386ead141fa0ee4b
|\ \ \  Merge: 97083bb af60362
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Jul 15 14:39:57 2011 +0200
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |       
| * | |   commit af60362941c2f25274698dcbab71a261e2b2f23e
| |\ \ \  Merge: 747718f 11771cc
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Fri Jul 15 03:56:44 2011 -0700
| | | | | 
| | | | |     Merge pull request #203 from karlnapf/master
| | | | |     
| | | | |     some work towards computing confidence intervals and more precise cross-validation
| | | | |      
| | * | | commit 11771ccc19ea35914c29c9b347f6adbbd2215654
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Fri Jul 15 12:50:24 2011 +0200
| | | | | 
| | | | |     applied interface changes in cross-validation class
| | | | | 
| | | | | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| | | | |      
| | * | | commit ae9e30f418106ddadf638d566f85e13bf8ecd9f2
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Fri Jul 15 12:50:10 2011 +0200
| | | | | 
| | | | |     apllied interface changes in other cross-validation class
| | | | | 
| | | | | M	examples/undocumented/python_modular/modelselection_grid_search_simple_modular.py
| | | | | M	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | | | |      
| | * | | commit b454101e6709b86a7e109ea0a1edc1116fadfbe2
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Fri Jul 15 12:49:46 2011 +0200
| | | | | 
| | | | |     some work/interface changes towards computing confidence intervals
| | | | | 
| | | | | M	src/libshogun/evaluation/CrossValidation.cpp
| | | | | M	src/libshogun/evaluation/CrossValidation.h
| | | | |      
* | | | | commit 97083bb07d51170258797f3f726c6e5a25b703f3
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Fri Jul 15 14:39:28 2011 +0200
| | | | | 
| | | | |     fix warnings in Load.java
| | | | | 
| | | | | M	examples/undocumented/java_modular/Load.java
| | | | |      
* | | | | commit db900c3f7b7273f66d132c5fa9d2c3e52e9bc7af
|/ / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Fri Jul 15 14:38:35 2011 +0200
| | | |   
| | | |       fix org.shogun.SWIGTYPE_p_shogun__CFile issue in Features
| | | |   
| | | |   M	src/modular/Clustering.i
| | | |   M	src/modular/Distance.i
| | | |   M	src/modular/Distribution.i
| | | |   M	src/modular/Evaluation.i
| | | |   M	src/modular/Features.i
| | | |   M	src/modular/Preprocessor.i
| | | |   M	src/modular/Structure.i
| | | |       
* | | |   commit 747718f7e48e9fbadb5d23cf3a9d2f4cf775dc53
|\ \ \ \  Merge: 8567b11 ffb86ed
| | |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| |   Date:   Fri Jul 15 02:48:46 2011 -0700
| | | |   
| | | |       Merge pull request #202 from sploving/master
| | | |       
| | | |       add all the remaining examples
| | | |     
| * | | commit ffb86edd60ababf4a65746582f5079b5882c35d2
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 15 17:38:29 2011 +0800
| | | | 
| | | |     add remaining examples
| | | | 
| | | | A	examples/undocumented/java_modular/mkl_binclass_modular.java
| | | | A	examples/undocumented/java_modular/mkl_multiclass_modular.java
| | | | A	examples/undocumented/java_modular/preprocessor_classicisomap_modular.java
| | | | A	examples/undocumented/java_modular/preprocessor_landmarkisomap_modular.java
| | | | A	examples/undocumented/java_modular/preprocessor_normone_modular.java
| | | | A	examples/undocumented/java_modular/preprocessor_pcacut_modular.java
| | | | A	examples/undocumented/java_modular/preprocessor_prunevarsubmean_modular.java
| | | | A	examples/undocumented/java_modular/preprocessor_randomfouriergausspreproc_modular.java
| | | | A	examples/undocumented/java_modular/preprocessor_sortulongstring_modular.java
| | | | A	examples/undocumented/java_modular/preprocessor_sortwordstring_modular.java
| | | | A	examples/undocumented/java_modular/serialization_complex_example.java
| | | |       
* | | |   commit 8567b111508ae1ff70afbc2101965b85c1b442f6
|\ \ \ \  Merge: 150cddb e1af5e5
| | |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| |   Date:   Fri Jul 15 02:33:52 2011 -0700
| | | |   
| | | |       Merge pull request #201 from karlnapf/master
| | | |       
| | | |       working grid-search example in python_modular
| | | |     
| * | | commit e1af5e5dc94a565846897088a1921d17703b0dae
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 15 11:29:00 2011 +0200
| | | | 
| | | |     now uses function for automatic testing
| | | | 
| | | | M	examples/undocumented/python_modular/modelselection_grid_search_simple_modular.py
| | | |     
| * | | commit 5832c3a4ab035cc96a6035a2fd9d92f36e168683
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 15 11:19:07 2011 +0200
| | | | 
| | | |     little change in print_tree() method
| | | | 
| | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | |     
| * | | commit f4cd4d3dbe154d66f171dab7e073b25ce0dba2eb
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 15 11:18:23 2011 +0200
| | | | 
| | | |     example for a simple grid-search
| | | | 
| | | | A	examples/undocumented/python_modular/modelselection_grid_search_simple_modular.py
| | | |     
| * | | commit 193483738deaae446c4817003b8b5379940704eb
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 15 10:56:04 2011 +0200
| | | | 
| | | |     applied interface changes
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| | | |     
| * | | commit 5c1f1b719c376ebedb22e3d09ea1b2d6dcad2573
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 15 10:55:31 2011 +0200
| | | | 
| | | |     added apply_to_machine method
| | | | 
| | | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | | M	src/libshogun/modelselection/ParameterCombination.h
| | | |     
| * | | commit f2c703a9b8aca3a4f62bc9d04889e7131a178ea3
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 15 10:55:16 2011 +0200
| | | | 
| | | |     changed select_model signature and added class comment
| | | | 
| | | | M	src/libshogun/modelselection/ModelSelection.h
| | | |     
| * | | commit 06d7f7cec080518ef6ff2b236c15d93c9601f4da
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 15 10:54:55 2011 +0200
| | | | 
| | | |     changed select_model signature and added class comment
| | | | 
| | | | M	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | | | M	src/libshogun/modelselection/GridSearchModelSelection.h
| | | |     
| * | | commit 3f2a0bf0edfecd2f1f1313261919937c47cdd15f
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 15 10:12:00 2011 +0200
| | | | 
| | | |     prints combinations of parameter tree now
| | | | 
| | | | M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| | | |     
| * | | commit a66aafaddb95775a9f7d33d14f3b694bc565e510
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Thu Jul 14 21:41:51 2011 +0200
| | |   
| | |       added namespace for some methods
| | |   
| | |   M	src/modular/Modelselection.i
| | |      
* | |   commit 150cddbcebb843316a93bfd7aef23b498f4efa37
|\ \ \  Merge: 98d5021 899890c
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Fri Jul 15 00:41:17 2011 -0700
| | |   
| | |       Merge pull request #200 from sploving/master
| | |       
| | |       add serialization example
| | |    
| * | commit 899890c1da1ab064d589c0a5e3388db2056e0e62
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Fri Jul 15 15:27:51 2011 +0800
| | | 
| | |     add serialization_svmlight_modular
| | | 
| | | A	examples/undocumented/java_modular/serialization_svmlight_modular.java
| | |    
* | | commit 98d5021c342102c4fe986a05cf971144a6388bdc
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jul 15 09:10:58 2011 +0200
| | | 
| | |     fix compile errors due to *kernel SGVector changes
| | | 
| | | M	src/libshogunui/GUIKernel.cpp
| | | M	src/libshogunui/SGInterface.cpp
| | |      
* | |   commit f511a42e5c31e7ae0149f2cd38b82114188c2bae
|\ \ \  Merge: b29e944 a615b6e
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Thu Jul 14 23:57:11 2011 -0700
| | |   
| | |       Merge pull request #199 from sploving/master
| | |       
| | |       add remaining kernel java examples
| | |    
| * | commit a615b6ecf839e9e7e603be1da76f082451b7991a
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Fri Jul 15 11:15:58 2011 +0800
| | | 
| | |     add remaining kernel examples
| | | 
| | | A	examples/undocumented/java_modular/kernel_custom_modular.java
| | | A	examples/undocumented/java_modular/kernel_fisher_modular.java
| | | A	examples/undocumented/java_modular/kernel_linear_byte_modular.java
| | | A	examples/undocumented/java_modular/kernel_linear_word_modular.java
| | | A	examples/undocumented/java_modular/kernel_poly_match_string_modular.java
| | | A	examples/undocumented/java_modular/kernel_poly_match_word_string_modular.java
| | | A	examples/undocumented/java_modular/kernel_salzberg_word_string_modular.java
| | | A	examples/undocumented/java_modular/kernel_spline_modular.java
| | |      
* | |   commit b29e944f186d7b68fde9f5fcd1b4da8c4356f34b
|\ \ \  Merge: f87cfdd d5988ef
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jul 14 13:07:06 2011 -0700
| | | | 
| | | |     Merge pull request #198 from karlnapf/master
| | | |     
| | | |     adding classes to Evaluation swig interface and doing some DynArray cleanups
| | | |     
| * | | commit d5988ef301459e0b7e3e84f47b24e5fdcc2be5ac
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Thu Jul 14 21:45:27 2011 +0200
| | |   
| | |       Squashed commit of the following:
| | |       
| | |       commit 116d110c03a9a4c394ecfbf52f11bb4eaac0d31e
| | |       Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |       Date:   Thu Jul 14 21:40:53 2011 +0200
| | |       
| | |           -removed wrong SG_REF
| | |           -usage of SGVector constructor to create array
| | |       
| | |       commit 477f42508a5f3f78cf8f4f3f3d4013745e58193c
| | |       Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |       Date:   Thu Jul 14 21:31:03 2011 +0200
| | |       
| | |           added classes
| | |       
| | |       commit b0399426af55d015a25104ce148b8f13beec6850
| | |       Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |       Date:   Thu Jul 14 21:30:34 2011 +0200
| | |       
| | |           applied interface changes due to SGVector changes
| | |       
| | |       commit 614b7fb3a93834cbde3977432941dc775609b5d5
| | |       Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |       Date:   Thu Jul 14 21:30:12 2011 +0200
| | |       
| | |           -generell cleanup
| | |           -usage of CDynamicObjectArray and CDynamicArray instead of DynArray
| | |           -SGVector cleanup
| | |       
| | |       commit 2dc5f3625ee1dcd864bf45fa4dbd0928fd6dd996
| | |       Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |       Date:   Thu Jul 14 21:29:06 2011 +0200
| | |       
| | |           added shuffle() method
| | |       
| | |       commit c6acd061a3ec4f5fc595e9d12d6f3c3740fa14d9
| | |       Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |       Date:   Thu Jul 14 21:28:57 2011 +0200
| | |       
| | |           added comment
| | |       
| | |       commit da48e781312037a8660eb01d5f4d4f47f9ff3d1b
| | |       Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |       Date:   Thu Jul 14 17:06:38 2011 +0200
| | |       
| | |           Revert "made get_evaluation_direction() const"
| | |       
| | |           This reverts commit da627efed746f371a9d33bf2799670a072523f40.
| | |       
| | |       commit 321aeefe86b4f9808055c29cc2889b171b2e9eee
| | |       Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |       Date:   Thu Jul 14 17:02:49 2011 +0200
| | |       
| | |           made get_evaluation_direction() const
| | |       
| | |       commit c89a51a6269df4f37b6ce01671457da24a7b0b8e
| | |       Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |       Date:   Thu Jul 14 16:50:36 2011 +0200
| | |       
| | |           made has_children() method const
| | |   
| | |   M	src/libshogun/evaluation/CrossValidation.cpp
| | |   M	src/libshogun/evaluation/SplittingStrategy.cpp
| | |   M	src/libshogun/evaluation/SplittingStrategy.h
| | |   M	src/libshogun/evaluation/StratifiedCrossValidationSplitting.cpp
| | |   M	src/libshogun/features/Subset.cpp
| | |   M	src/libshogun/lib/DynamicArray.h
| | |   M	src/libshogun/lib/DynamicObjectArray.h
| | |   M	src/libshogun/modelselection/ModelSelectionParameters.h
| | |   M	src/modular/Evaluation.i
| | |   M	src/modular/Evaluation_includes.i
| | |    
* | | commit f87cfddf41436b7b2023f3d751ed5bd3239399bf
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Thu Jul 14 17:42:50 2011 +0200
| |   
| |       change order of includes to fix
| |       
| |       <shogun.Modelselection.DynamicParameterCombinationArray; proxy of <Swig Object of type 'shogun::CDynamicObjectArray< shogun::CParameterCombination > *' at 0x936ead0> >
| |       
| |       problem.
| |   
| |   M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| |   M	src/modular/Modelselection.i
| |   
* | commit 2f5bb6e96dbe1db4b53721b624e33d78437e3eb3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jul 14 17:22:34 2011 +0200
| | 
| |     make distributions known from features
| | 
| | M	src/modular/Classifier.i
| | M	src/modular/Clustering.i
| | M	src/modular/Distance.i
| | M	src/modular/Evaluation.i
| | M	src/modular/Features.i
| | M	src/modular/Kernel.i
| | M	src/modular/Preprocessor.i
| | M	src/modular/Regression.i
| | M	src/modular/Structure.i
| |     
* |   commit e639ed1255a9984e49021b947fd422355b52214e
|\ \  Merge: 0849d96 686bc79
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Jul 14 07:51:37 2011 -0700
| | | 
| | |     Merge pull request #196 from sploving/master
| | |     
| | |     add some kernel example for java_modular
| | |    
| * | commit 686bc79101f37784db1eb729ba1da126ecf5895f
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Jul 14 22:47:44 2011 +0800
| | | 
| | |     added some kernel examples
| | | 
| | | M	examples/undocumented/java_modular/distribution_hmm_modular.java
| | | A	examples/undocumented/java_modular/kernel_top_modular.java
| | | A	examples/undocumented/java_modular/kernel_weighted_degree_position_string_modular.java
| | | A	examples/undocumented/java_modular/kernel_weighted_degree_string_modular.java
| | |      
* | |   commit 0849d963c03e34e5bc6698630e383bb0a5d7a82d
|\ \ \  Merge: 4d8af57 f2a445c
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jul 14 06:34:33 2011 -0700
| | | | 
| | | |     Merge pull request #195 from karlnapf/master
| | | |     
| | | |     more tests
| | | |     
| * | | commit f2a445c639b007a43bc7e3de8c6eecdd0b9b8935
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jul 14 15:32:09 2011 +0200
| | | | 
| | | |     added some more in depth test-cases for CModelSelectionParameters::get_combinations()
| | | | 
| | | | A	examples/undocumented/libshogun/modelselection_model_selection_parameters_test.cpp
| | | |     
| * | | commit 8977bb4f4156caa28a3ba3079ebb8ec4c89880d9
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jul 14 15:28:49 2011 +0200
| | | | 
| | | |     Revert "new test cases"
| | | |     
| | | |     This reverts commit 2b2a1ed7cca98fd6d06591ef717b438de3ce036d.
| | | | 
| | | | M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| | | |     
| * | | commit 2b2a1ed7cca98fd6d06591ef717b438de3ce036d
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jul 14 15:27:08 2011 +0200
| | | | 
| | | |     new test cases
| | | | 
| | | | M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| | | |       
* | | |   commit 4d8af57510f11a6fa40affe6b2bc9e3fd7686099
|\ \ \ \  Merge: 61647c8 32a8769
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Thu Jul 14 15:32:54 2011 +0200
| | | | | 
| | | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | | |        
| * | | |   commit 32a8769fd856db817256e522478933c1a75ee558
| |\ \ \ \  Merge: 140b139 c3f3a8a
| | |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | |   Date:   Thu Jul 14 06:19:05 2011 -0700
| | | | |   
| | | | |       Merge pull request #194 from karlnapf/master
| | | | |       
| | | | |       first working little python_modular example
| | | | |      
| | * | | commit c3f3a8aa6e075c47abd7600e0f2adc8ed72e2656
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 14 15:12:34 2011 +0200
| | | | | 
| | | | |     more info for print_tree()
| | | | | 
| | | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | |      
| | * | | commit 79a12c7bf9afed5977d6bafc7faf0c2cac8b52b1
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 14 14:54:15 2011 +0200
| | | | | 
| | | | |     make example work
| | | | | 
| | | | | M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| | | | |      
| | * | | commit 7fed39876dbe0600b0c2defb42cd17f19341615d
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 14 14:53:57 2011 +0200
| | | | | 
| | | | |     made some methods const fixing compiler errors
| | | | | 
| | | | | M	src/libshogun/base/DynArray.h
| | | | |      
| | * | | commit ba19b199485eaa6c493f624cf12bad4fafafab9a
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 14 14:53:41 2011 +0200
| | | | | 
| | | | |     fixed type conversion error
| | | | | 
| | | | | M	src/libshogun/lib/DynamicObjectArray.h
| | | | |      
| | * | | commit b645a0d7480cd0455448242eb1785b9163a1c4dd
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Thu Jul 14 14:53:31 2011 +0200
| | | |   
| | | |       more work towars usage of CDynamicObjectArray
| | | |   
| | | |   M	src/modular/Modelselection.i
| | | |   M	src/modular/Modelselection_includes.i
| | | |     
* | | | commit 61647c8929833caca6f4973252f3d41423bd83c2
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Thu Jul 14 15:31:28 2011 +0200
| | |   
| | |       convert set_position_weights and set_shifts to SGVector
| | |   
| | |   M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| | |   M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| | |    
* | | commit 140b13900e64a5fe51bda2391ff29c1dd679e612
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Jul 14 09:02:58 2011 +0200
| | | 
| | |     add example for fisher test
| | | 
| | | A	examples/undocumented/python_modular/library_fisher2x3_modular.py
| | |    
* | | commit 8b3c5d3196154b5b1885f9609ffaef6656906cf4
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jul 13 23:42:39 2011 +0200
| | | 
| | |     remove obsolete typemaps from csharp - nothing in cs works yet though
| | | 
| | | M	src/csharp_modular/swig_typemaps.i
| | |      
* | |   commit fbeb5405c86e48b2dacd57064c5081a072648ccc
|\ \ \  Merge: 8e6b8e0 1b2802d
| | |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |/|   Date:   Wed Jul 13 23:39:43 2011 +0200
| | |   
| | |       Merge branch 'master' of github.com:shogun-toolbox/shogun
| | |    
| * | commit 1b2802df817fadb1559c5b60856697133f4788c4
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Thu Jul 14 01:19:25 2011 +0400
| | | 
| | |     Modify - LandmarkIsomap example
| | | 
| | | M	examples/undocumented/python_modular/preprocessor_landmarkisomap_modular.py
| | |    
| * | commit c4fbb4a784b860cea5c4ada63b5b99395a9d1602
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Thu Jul 14 01:10:36 2011 +0400
| | | 
| | |     Example preprocessor_isomap_modular is splitted into 2 parts with ClassicIsomap and LandmarkIsomap
| | | 
| | | A	examples/undocumented/python_modular/preprocessor_classicisomap_modular.py
| | | D	examples/undocumented/python_modular/preprocessor_isomap_modular.py
| | | A	examples/undocumented/python_modular/preprocessor_landmarkisomap_modular.py
| | |      
| * |   commit a0c02ba1bed0a66975cb9b4530beb67efefc4619
| |\ \  Merge: 2f7d4e0 90b0f55
| | |/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | |   Date:   Wed Jul 13 21:39:03 2011 +0400
| | |   
| | |       Merge branch 'master' of https://github.com/sploving/shogun
| | |    
| | * commit 90b0f55b0ebb9e46547f03a2e1671f69ea4eeda3
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Wed Jul 13 23:38:33 2011 +0800
| | | 
| | |     add some remaining exmaples
| | | 
| | | M	examples/undocumented/java_modular/kernel_anova_modular.java
| | |    
| | * commit 3e92b7df0c289539a2ba7812ddc970fca00d9a2e
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Wed Jul 13 23:38:16 2011 +0800
| | | 
| | |     add some remaining exmaples
| | | 
| | | D	examples/undocumented/java_modular/test.java
| | |    
| | * commit 1566f21d032be0dfeae0ef1e11bc7a0013edb320
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Wed Jul 13 23:37:33 2011 +0800
| | | 
| | |     add some remaining exmaples
| | | 
| | | M	examples/undocumented/java_modular/classifier_averaged_perceptron_modular.java
| | | A	examples/undocumented/java_modular/kernel_anova_modular.java
| | | A	examples/undocumented/java_modular/kernel_combined_modular.java
| | | A	examples/undocumented/java_modular/kernel_exponential_modular.java
| | | A	examples/undocumented/java_modular/kernel_histogram_word_string_modular.java
| | | A	examples/undocumented/java_modular/test.java
| | |      
| * |   commit 2f7d4e0cd778496848d300615d076479eacf752f
| |\ \  Merge: 259c5d3 63941c8
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Wed Jul 13 21:37:04 2011 +0400
| | | | 
| | | |     Merge branch 'master' of git://github.com/karlnapf/shogun
| | | |     
| | * | commit 63941c8ca4ac9d70ddacee3a7e8ea1cece980deb
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 13 19:24:15 2011 +0200
| | | | 
| | | |     completely reworked memory usage to now use the new CDynamicObjectArray and fixed many memory bugs
| | | | 
| | | | M	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | | M	src/libshogun/modelselection/ParameterCombination.h
| | | |     
| | * | commit 55d3358189e9bd0c31d5a5c49843b9196cd16a2c
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 13 19:23:35 2011 +0200
| | | | 
| | | |     various changes and bugfixes
| | | | 
| | | | M	src/libshogun/lib/DynamicObjectArray.h
| | | |     
| | * | commit b3ee5bc25b98128ffcc53b854439bb1c138f6081
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 13 19:22:48 2011 +0200
| | | | 
| | | |     usage of new CDynamicObjectArray and method rename
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | | |     
| | * | commit 31e019bab21644fde36bc6198ed9975bb389df01
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 13 19:22:20 2011 +0200
| | | | 
| | | |     method rename
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| | | |     
| | * | commit bbc6be68b093d6a3e4f85c2c7d8fef8b8750c3ea
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 13 19:22:11 2011 +0200
| | | | 
| | | |     usage of new CDynamicObjectArray and method rename
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | |     
| | * | commit 47ced8efa6cbfa571f0f51f0f7a8dcf3d001aba6
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 13 19:21:40 2011 +0200
| | | | 
| | | |     added test for CModelSelectionParameters
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | |     
| | * | commit 3113df16a27660aa49a5edfa1318ba9aa66b531f
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 13 13:08:53 2011 +0200
| | | | 
| | | |     added test for CParameterCombination
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | |     
| | * | commit 8b89cd90c12fc34c0ca686fc6da5a56f5b07e1e7
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 13 12:59:54 2011 +0200
| | | | 
| | | |     added test for methods in CParameterCombination
| | | | 
| | | | A	examples/undocumented/libshogun/modelselection_parameter_combination_test.cpp
| | | |     
| | * | commit 3ea6132b6d78f25b79c57f9b8da59d90c65d1da2
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 13 12:55:35 2011 +0200
| | | | 
| | | |     reworked parameter_set_multiplication and leaf_sets_multiplication to use CDynamicObjectArray for input/output/processing
| | | | 
| | | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | | M	src/libshogun/modelselection/ParameterCombination.h
| | | |       
| | * |   commit 6a80e2fe64ac563e17481a92d541a9016f7f4a11
| | |\ \  Merge: 08ba23a c43baca
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jul 11 16:25:47 2011 +0200
| | | | | 
| | | | |     Merge remote-tracking branch 'upstream/master'
| | | | |      
| | * | | commit 08ba23a4101acdc61d5543419ba94766700316c1
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jul 11 15:02:46 2011 +0200
| | | | | 
| | | | |     spelling mistakes
| | | | | 
| | | | | M	src/libshogun/modelselection/ParameterCombination.h
| | | | |      
| | * | | commit 68726f5e1a8105a4dda4eb9f2c21fd9fbb73e2ba
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jul 11 14:56:10 2011 +0200
| | | | | 
| | | | |     Revert "made CDynamicObjectArray non-templated again. it now CSGObject pointers as CList"
| | | | |     
| | | | |     This reverts commit 5b5fca9c7a5508a041fa32a054ed5695ca000110.
| | | | | 
| | | | | M	src/libshogun/base/DynArray.h
| | | | | M	src/libshogun/lib/DynamicObjectArray.h
| | | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | | | M	src/libshogun/modelselection/ParameterCombination.h
| | | | |      
| | * | | commit 5b5fca9c7a5508a041fa32a054ed5695ca000110
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jul 11 14:24:40 2011 +0200
| | | | | 
| | | | |     made CDynamicObjectArray non-templated again. it now CSGObject pointers as CList
| | | | | 
| | | | | M	src/libshogun/base/DynArray.h
| | | | | M	src/libshogun/lib/DynamicObjectArray.h
| | | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | | | M	src/libshogun/modelselection/ParameterCombination.h
| | | | |      
| * | | | commit 259c5d3278100bd2e530dd3c2bc98196847705ae
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Wed Jul 13 20:34:41 2011 +0400
| | | | | 
| | | | |     Improved arpack wrapper
| | | | | 
| | | | | M	src/libshogun/lib/arpack.cpp
| | | | |      
| * | | | commit d66238c0fd97c797ef29b04c9696daba2fe064ca
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Wed Jul 13 20:34:27 2011 +0400
| | | | | 
| | | | |     Changed arpack mode at Locally Linear Embedding
| | | | | 
| | | | | M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | | | |      
* | | | | commit 8e6b8e06dd86b27f762076fe990aa9ef926edc5b
|/ / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Wed Jul 13 23:37:51 2011 +0200
| | | |   
| | | |       - introduce lgammal
| | | |       - add display_vector for long double
| | | |       - change p-value computation to use floatmax_t and logarithmic_sum to increase robustness
| | | |   
| | | |   M	src/libshogun/lib/Mathematics.cpp
| | | |   M	src/libshogun/lib/Mathematics.h
| | | |       
* | | |   commit d801a246a1d7bbdfcb20114325ee771ca7b1cb11
|\ \ \ \  Merge: c43baca 3c0bb6e
| |_|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Tue Jul 12 23:33:26 2011 -0700
| | | |   
| | | |       Merge pull request #188 from frx/streaming_1
| | | |       
| | | |       OnlineLibLinear and some other minor changes
| | | |     
| * | | commit 3c0bb6e674c0c4cc7731d5f79de5918df0137bd1
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Wed Jul 13 09:03:59 2011 +0530
| | | | 
| | | |     Revert temp OnlineSVMSGD change.
| | | | 
| | | | M	src/libshogun/classifier/svm/OnlineSVMSGD.cpp
| | | | M	src/libshogun/classifier/svm/OnlineSVMSGD.h
| | | |     
| * | | commit c4ec26bc3b911c43d7caf02a117d5411fac413c7
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Wed Jul 13 08:55:42 2011 +0530
| | | | 
| | | |     Revert temp SGD change.
| | | |     Added OnlineLibLinear using one solver.
| | | |     Change in StreamingSimpleFeatures, implementing dot() when called with another StreamingDotFeatures object.
| | | | 
| | | | A	src/libshogun/classifier/svm/OnlineLibLinear.cpp
| | | | A	src/libshogun/classifier/svm/OnlineLibLinear.h
| | | | M	src/libshogun/classifier/svm/SVMSGD.cpp
| | | | M	src/libshogun/features/StreamingSimpleFeatures.h
| | | |     
| * | | commit 58f3522f0ce2026908e063f39ba40e16cf4848b8
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Mon Jul 11 18:08:09 2011 +0530
| | | | 
| | | |     Temp: Some debug outputs from svmsgd.
| | | | 
| | | | M	src/libshogun/classifier/svm/OnlineSVMSGD.cpp
| | | | M	src/libshogun/classifier/svm/OnlineSVMSGD.h
| | | | M	src/libshogun/classifier/svm/SVMSGD.cpp
| | | |     
| * | | commit 77e0762bdadc7712ac112a2dd384eb85838f725e
|/ / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | |   Date:   Fri Jul 8 20:37:15 2011 +0530
| | |   
| | |       Changed default calibration sample to 1000 vectors in online SGD, and size of ring to be 1024 for StreamingSimpleFeatures.
| | |   
| | |   M	src/libshogun/classifier/svm/OnlineSVMSGD.cpp
| | |   M	src/libshogun/classifier/svm/OnlineSVMSGD.h
| | |   M	src/libshogun/features/StreamingSimpleFeatures.h
| | |    
* | | commit c43bacac388399b4374a34e8e9821e552ac12fc8
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 11 16:00:49 2011 +0200
| | | 
| | |     fix compilation of modular modelselection
| | | 
| | | M	src/modular/Modelselection.doxy
| | | M	src/modular/Modelselection.i
| | | M	src/modular/Modelselection_includes.i
| | |    
* | | commit 5de9c2ef3cd9a5b4b2e931c95b5a5cee4b20b728
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 11 15:41:44 2011 +0200
| | | 
| | |     use default init
| | | 
| | | M	data
| | | M	examples/undocumented/csharp_modular/minimal_test.cs
| | |      
* | |   commit 37817ad62f8c842421c864b584d7b45244d7ccae
|\ \ \  Merge: e3bcc1e 9cf7dbc
| | |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |/|   Date:   Mon Jul 11 06:03:53 2011 -0700
| | |   
| | |       Merge pull request #187 from sploving/master
| | |       
| | |         add java features examples
| | |    
| * | commit 9cf7dbcfae6b17553edd8f905661368c7462f123
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Mon Jul 11 20:53:20 2011 +0800
| | | 
| | |     add java features examples
| | | 
| | | A	examples/undocumented/java_modular/features_simple_byte_modular.java
| | | A	examples/undocumented/java_modular/features_simple_longint_modular.java
| | | A	examples/undocumented/java_modular/features_simple_modular.java
| | | A	examples/undocumented/java_modular/features_simple_real_modular.java
| | | A	examples/undocumented/java_modular/features_snp_modular.java
| | | A	examples/undocumented/java_modular/features_string_char_compressed_modular.java
| | | A	examples/undocumented/java_modular/features_string_char_modular.java
| | | A	examples/undocumented/java_modular/features_string_file_char_modular.java
| | | A	examples/undocumented/java_modular/features_string_file_modular.java
| | | A	examples/undocumented/java_modular/features_string_hashed_wd_modular.java
| | | A	examples/undocumented/java_modular/features_string_sliding_window_modular.java
| | | A	examples/undocumented/java_modular/features_string_ulong_modular.java
| | | A	examples/undocumented/java_modular/features_string_word_modular.java
| | |      
* | |   commit e3bcc1ec97fb17c1ceb7128cb1abad7eae74967a
|\ \ \  Merge: ee98378 24d4066
| | |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |/|   Date:   Mon Jul 11 06:00:43 2011 -0700
| | |   
| | |       Merge pull request #186 from karlnapf/master
| | |       
| | |       reworked memory managment of model selection framwork
| | |      
| * |   commit 24d4066a9a0c9fe42f6c6b0e9207a22631d1970c
| |\ \  Merge: f1a6877 ee98378
| |/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| |   Date:   Mon Jul 11 09:53:26 2011 +0200
| | |   
| | |       Merge remote-tracking branch 'upstream/master'
| | |       
| | |       Conflicts:
| | |       	data
| | |    
* | | commit ee983782cdf621eb33431258d89e8ecbaa90e926
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Jul 10 23:44:43 2011 +0200
| | | 
| | |     fix java examples
| | | 
| | | M	data
| | | M	examples/undocumented/java_modular/clustering_kmeans_modular.java
| | | M	examples/undocumented/java_modular/preprocessor_isomap_modular.java
| | |      
* | |   commit 268bccc3581abdcf722727a8445ad99e449299b0
|\ \ \  Merge: 419387b b0c3848
| | |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |/|   Date:   Sun Jul 10 13:24:10 2011 -0700
| | |   
| | |       Merge pull request #185 from sploving/master
| | |       
| | |       add remaining distribution java examples
| | |    
| * | commit b0c3848ef57d02eee26536af2ec39d2b9a54c05d
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Mon Jul 11 00:00:58 2011 +0800
| | | 
| | |     add distribution java examples
| | | 
| | | M	examples/undocumented/java_modular/Load.java
| | | A	examples/undocumented/java_modular/distribution_hmm_modular.java
| | | A	examples/undocumented/java_modular/distribution_linearhmm_modular.java
| | | A	examples/undocumented/java_modular/distribution_ppwm_modular.java
| | |    
* | | commit 419387b7c76f76a42ad40c2e91a2e70853da22c5
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jul 10 02:36:48 2011 +0400
| | | 
| | |     Removed junk
| | | 
| | | M	src/libshogun/lib/arpack.cpp
| | | M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | |    
* | | commit 46aed740d2abf4aa159c20a063b632d02c6d2fa9
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jul 10 02:35:16 2011 +0400
| | | 
| | |     Modified preprocessors using arpack for new parameter
| | | 
| | | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | |    
* | | commit 67826b5ab1495a74c5b172486a4768d05616e5cd
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jul 10 02:34:30 2011 +0400
| | | 
| | |     Added Cholesky factorization for Arpack wrapper
| | | 
| | | M	src/libshogun/lib/arpack.cpp
| | | M	src/libshogun/lib/arpack.h
| | |      
* | |   commit 08b175b3e47e04fc6535d42691ba0f92fb413a92
|\ \ \  Merge: 1119fc2 53b6f91
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Sat Jul 9 11:35:23 2011 -0700
| | |   
| | |       Merge pull request #184 from sploving/master
| | |       
| | |       add remaining classifier java examples
| | |    
| * | commit 53b6f91a8c4deda23ac59fc1da1516b9b2f60ba2
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Sat Jul 9 23:37:36 2011 +0800
| | | 
| | |     add distribution_histogram_modular java example
| | | 
| | | A	examples/undocumented/java_modular/distribution_histogram_modular.java
| | |    
| * | commit 00b9a3cccfad0d93191133cd93a70948449da901
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Sat Jul 9 23:17:17 2011 +0800
| | | 
| | |     add clustering java examples
| | | 
| | | A	examples/undocumented/java_modular/clustering_hierarchical_modular.java
| | | A	examples/undocumented/java_modular/clustering_kmeans_modular.java
| | |    
| * | commit e34a3b896dc6ccf114cc0f96b25063715afc039e
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Sat Jul 9 22:18:29 2011 +0800
| | | 
| | |     add remaining classifier java examples
| | | 
| | | A	examples/undocumented/java_modular/classifier_domainadaptationsvm_modular.java
| | | A	examples/undocumented/java_modular/classifier_svmlight_linear_term_modular.java
| | | A	examples/undocumented/java_modular/classifier_svmlight_modular.java
| | |      
* | |   commit 1119fc2b15d79702259de3b2616db306d65b57fa
|\ \ \  Merge: 57f2cfa 9fbef9c
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Fri Jul 8 12:44:37 2011 -0700
| | |   
| | |       Merge pull request #183 from sploving/master
| | |       
| | |       add ModularTutorial mainpage
| | |    
| * | commit 9fbef9cfb5ee6e1a8b957f05bf7dd51357d98b7b
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Fri Jul 8 23:12:07 2011 +0800
| | | 
| | |     add java support in INSTALL file
| | | 
| | | M	src/INSTALL
| | |    
| * | commit 607aae443b644f9f718a01fa1a285b38eb0ac50c
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Fri Jul 8 22:56:12 2011 +0800
| | | 
| | |     add ModularTutorial mainpage for java
| | | 
| | | M	doc/pages/ModularTutorial.mainpage
| | |    
| * | commit 1dac476afccde86a7efc5980e9af6f033d7c4111
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Fri Jul 8 21:20:35 2011 +0800
| | | 
| | |     add java support in Installation.mainpage
| | | 
| | | M	doc/pages/Installation.mainpage
| | |    
| | * commit f1a687730bb9855434cc7d5e5ca59c5732b2e924
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Jul 11 09:50:34 2011 +0200
| | | 
| | |     made an helper method private
| | | 
| | | M	src/libshogun/modelselection/ParameterCombination.h
| | |    
| | * commit 7bac23f6a8bb9d175ddb28818e054d9302844f57
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sat Jul 9 22:06:32 2011 +0200
| | | 
| | |     usage of DynamicObjectArray for children nodes
| | | 
| | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | |    
| | * commit c2aac4f3a7f156bd43b2a94969641abd606984e3
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sat Jul 9 21:53:40 2011 +0200
| | | 
| | |     set_element of same element with refcount=1 now does not delete element anymore
| | | 
| | | M	src/libshogun/lib/DynamicObjectArray.h
| | |    
| | * commit 0483ab5ec4bc404a0f7dc1512aa9fafc07817644
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sat Jul 9 21:53:12 2011 +0200
| | | 
| | |     -removed delete method of CParameterCombination
| | |     -usage of SG_REF/SG_Unref
| | |     -minor memory managment changes in CParameterCombination
| | |     (memclean according to valgrind)
| | | 
| | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| | | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | | M	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | M	src/libshogun/modelselection/ParameterCombination.h
| | |    
| | * commit e7ffe249af08e9de56bb2eaf6e1436cb6aeb8f22
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sat Jul 9 21:06:47 2011 +0200
| | | 
| | |     Revert "memory errors"
| | |     
| | |     This reverts commit 2987bb07a6bd66eec450fd4ca2b97664041837a4.
| | | 
| | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | M	src/libshogun/modelselection/ParameterCombination.h
| | |    
| | * commit 2987bb07a6bd66eec450fd4ca2b97664041837a4
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sat Jul 9 21:05:37 2011 +0200
| | | 
| | |     memory errors
| | |     Revert "made CParameterCombination inherit from CSGObject"
| | |     
| | |     This reverts commit d350274eb981dcb8b9cbc268b1ba93490a4ec4c9.
| | | 
| | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | M	src/libshogun/modelselection/ParameterCombination.h
| | |    
| | * commit cfd2a4060ed75ff2f6dba376f6a741ddf9d9e496
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sat Jul 9 21:00:45 2011 +0200
| | | 
| | |     Revert "initial work towards usage of CDynamicObjectArray"
| | |     
| | |     This reverts commit 282605933f1f6595febda760e7d4f01af6fd2221.
| | | 
| | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | |    
| | * commit 01baecc3de29e4fb58d47523a58eb77d455b2179
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Fri Jul 8 10:53:56 2011 +0200
| | | 
| | |     include cleanup
| | | 
| | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| | | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | |    
| | * commit 48f29ac5938f02dcc2f05fa3b26f826d1951111b
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Fri Jul 8 10:52:11 2011 +0200
| | | 
| | |     added dynamic cast to ensure generic type is of type CSGObject
| | | 
| | | M	src/libshogun/lib/DynamicObjectArray.h
| | |      
| | *   commit e2d17fb307d3062762e8d01b4fd64cadc73f7c0c
| | |\  Merge: e909efa 57f2cfa
| |_|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| |   Date:   Fri Jul 8 10:25:33 2011 +0200
| | |   
| | |       Merge remote-tracking branch 'upstream/master' into python_zeugs
| | |       
| | |       Conflicts:
| | |       	src/libshogun/lib/Mathematics.cpp
| | |    
* | | commit 57f2cfadd7b1241a4a271b5653db49a84b6062fe
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Fri Jul 8 12:23:28 2011 +0400
| | | 
| | |     Fixed ambiguous ambiguity
| | | 
| | | M	src/libshogun/lib/Mathematics.cpp
| | |    
| | * commit e909efabd8ce1dc9114b1e20dcb1d66573d6717e
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Fri Jul 8 10:12:47 2011 +0200
| | | 
| | |     fixing an abigious call compile error
| | | 
| | | M	src/libshogun/lib/Mathematics.cpp
| | |      
| | *   commit ecf1d810b82b56d7c8457933e93eaf75e0188269
| | |\  Merge: 2826059 eddc83a
| |_|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| |   Date:   Fri Jul 8 09:58:36 2011 +0200
| | |   
| | |       Merge remote-tracking branch 'upstream/master'
| | |      
* | |   commit eddc83a2db2872b62e21260392d517397da735fe
|\ \ \  Merge: afbb4cf eeb0db5
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jul 7 22:47:42 2011 +0200
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |     
| * | | commit eeb0db58375ea01d770d7af53e602931cb53c3d0
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Thu Jul 7 23:33:18 2011 +0400
| | | | 
| | | |     Removed wrong example
| | | | 
| | | | D	examples/undocumented/python_modular/graphical/swissroll_lle.py
| | | |     
| * | | commit da3af461ae10473f3bf3c4c0fc89516fb7d0ca84
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Thu Jul 7 23:31:22 2011 +0400
| | | | 
| | | |     Updated data
| | | | 
| | | | M	data
| | | |     
| * | | commit 393de5cad7531c071c414dad47cc886ddb6fd513
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Thu Jul 7 23:31:12 2011 +0400
| | | | 
| | | |     Moved swissroll example to subdir, added hemisphere example
| | | | 
| | | | A	examples/undocumented/python_modular/graphical/dimreduct/hemisphere.py
| | | | A	examples/undocumented/python_modular/graphical/dimreduct/swissroll.py
| | | | D	examples/undocumented/python_modular/graphical/swissroll.py
| | | | A	examples/undocumented/python_modular/graphical/swissroll_lle.py
| | | |       
| * | |   commit 539aaebfda725c0d5db850941b110de49ef2c5a3
| |\ \ \  Merge: 285cdee e5e175f
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Thu Jul 7 22:27:25 2011 +0400
| | | | | 
| | | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | | |      
| * | | | commit 285cdeeea3f24b49e8407c6cb2b14a0a5f5ccf04
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Thu Jul 7 22:26:03 2011 +0400
| | | | | 
| | | | |     Added ARPACK support for LocallyLinearEmbedding
| | | | | 
| | | | | M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | | | |      
* | | | | commit afbb4cffbccb84f372949d034ca9e60eecad88e1
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Thu Jul 7 22:44:22 2011 +0200
| | | |   
| | | |       fix matrix order
| | | |   
| | | |   M	src/libshogun/features/SNPFeatures.cpp
| | | |   M	src/libshogun/features/SNPFeatures.h
| | | |       
* | | |   commit e5e175f2832ff19d1bf06f1466c34405fef321f9
|\ \ \ \  Merge: 37fcfdc b93b623
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Thu Jul 7 10:52:36 2011 -0700
| | | |   
| | | |       Merge pull request #181 from frx/streaming_1
| | | |       
| | | |       OnlineLinearMachine minor modifications
| | | |     
| * | | commit b93b6235113a09158ace2b553cebd96b347b7d3a
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Thu Jul 7 21:53:01 2011 +0530
| | | | 
| | | |     Rename apply_to_this_example to apply_to_current_example() in OnlineLinearMachine.
| | | | 
| | | | M	src/libshogun/machine/OnlineLinearMachine.cpp
| | | | M	src/libshogun/machine/OnlineLinearMachine.h
| | | |     
| * | | commit 827f72a446323d771889658e57519ffe3f00fae2
|/ / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | |   Date:   Thu Jul 7 21:47:14 2011 +0530
| | |   
| | |       Made a check for whether the parser is running already in start_parser().
| | |       Implemented the apply() function for OnlineLinearMachine.
| | |   
| | |   M	src/libshogun/lib/InputParser.h
| | |   M	src/libshogun/machine/OnlineLinearMachine.cpp
| | |   M	src/libshogun/machine/OnlineLinearMachine.h
| | |    
* | | commit 37fcfdc4c5a3dcea44dbbc6d35c578f3866a2e92
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Jul 7 17:38:48 2011 +0200
| | | 
| | |     properly do the templating with friends
| | | 
| | | M	src/libshogun/base/DynArray.h
| | |      
* | |   commit e630eb250bc199a14ef0de43b538f439294dc8da
|\ \ \  Merge: 5bd07dc 111a5a7
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Thu Jul 7 16:51:38 2011 +0200
| | |   
| | |       Merge branch 'master' of github.com:shogun-toolbox/shogun into fisher
| | |      
| * |   commit 111a5a7eb460280fc9d76307c09e4529aefe5777
| |\ \  Merge: c49ac89 aaf13bf
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jul 7 06:49:03 2011 -0700
| | | | 
| | | |     Merge pull request #179 from karlnapf/master
| | | |     
| | | |     error correction and generic DynamicObjectArray
| | | |     
* | | | commit 5bd07dc10f21e8b0ad3a63b5943d97a628352f03
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jul 7 16:50:28 2011 +0200
| | | | 
| | | |     add fishers statistics test for 2x3 tables
| | | | 
| | | | M	src/libshogun/lib/Mathematics.cpp
| | | | M	src/libshogun/lib/Mathematics.h
| | | |     
* | | | commit 52f2f0ae5a6dcbc77a9ff0ea776e2a0aaf646346
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jul 7 16:50:04 2011 +0200
| | | | 
| | | |     tell swig that apply returns a new object
| | | | 
| | | | M	src/modular/Classifier.i
| | | |     
* | | | commit e2e4701b1c64e341a69d6127ba9a2c368c91fb20
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jul 7 09:07:46 2011 +0200
| | | | 
| | | |     add function to test for multiple tables
| | | | 
| | | | M	src/libshogun/lib/Mathematics.h
| | | |     
* | | | commit 52350ee2d4921532e6aa6696ffa3e68d06b99aec
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jul 7 09:06:41 2011 +0200
| | | | 
| | | |     introduce fishers exact test for 3x2 tables
| | | | 
| | | | M	src/libshogun/lib/Mathematics.cpp
| | | | M	src/libshogun/lib/Mathematics.h
| | | |     
| | | * commit 282605933f1f6595febda760e7d4f01af6fd2221
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jul 7 17:01:54 2011 +0200
| | | | 
| | | |     initial work towards usage of CDynamicObjectArray
| | | | 
| | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | |     
| | | * commit 4568913ae2ecea93097b30c9315ec71142230ada
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jul 7 17:00:51 2011 +0200
| | | | 
| | | |     change of pointer usage
| | | | 
| | | | M	src/libshogun/lib/DynamicObjectArray.h
| | | |     
| | | * commit 5c0f6e566c1d0b3472d6b69d7290a3ccfe6a3c0a
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jul 7 16:02:38 2011 +0200
| | | | 
| | | |     include cleanup
| | | | 
| | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | |       
| | | *   commit f70d406884a196de574532d7cbbdcd600b02e9e5
| | | |\  Merge: 8fb5235 aaf13bf
| | | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |/|   Date:   Thu Jul 7 16:00:16 2011 +0200
| | | |   
| | | |       Merge branch 'master' into python_zeugs
| | | |       
| | * |   commit aaf13bfb44a40000c0cd666b4cc92e6556d6abe7
| | |\ \  Merge: b5719cc c49ac89
| | |/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/| |   Date:   Thu Jul 7 15:45:42 2011 +0200
| | | |   
| | | |       Merge remote-tracking branch 'upstream/master'
| | | |       
| * | |   commit c49ac898f33f8443f7f52a194c3b5e3a5bd4f8cb
| |\ \ \  Merge: a0d8aa3 c4334b7
|/ / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Thu Jul 7 01:48:21 2011 -0700
| | | |   
| | | |       Merge pull request #178 from karlnapf/master
| | | |       
| | | |       DynamicObjectArray
| | | |     
| | * | commit b5719ccea7ad1052e75e5a721e355e56a944dabe
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jul 7 14:02:36 2011 +0200
| | | | 
| | | |     applied name change of DynamicObjectArray which is in addition now generic
| | | | 
| | | | M	src/libshogun/base/DynArray.h
| | | |     
| | * | commit 62453666c1b3efde0a3e8dd4d10c346bc9d33441
| |/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Thu Jul 7 14:01:59 2011 +0200
| | |   
| | |       made generic to have type safety
| | |   
| | |   M	src/libshogun/lib/DynamicObjectArray.h
| | |      
| | *   commit 8fb5235f6ee70d050248fd9c57c7f49243b0e971
| | |\  Merge: ce84d3f c4334b7
| | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/|   Date:   Thu Jul 7 10:48:09 2011 +0200
| | |   
| | |       Merge branch 'master' into python_zeugs
| | |    
| * | commit c4334b7391b11573d6818161a8f7ea53d9ff36f8
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Thu Jul 7 10:41:15 2011 +0200
| |   
| |       -renamed DynamicArrayPtr to DynamicObjectArray
| |       -added SG_REF/SG_UNREF treatment of elements
| |   
| |   D	src/libshogun/lib/DynamicArrayPtr.h
| |   A	src/libshogun/lib/DynamicObjectArray.h
| |     
* |   commit a0d8aa34b0ee15601bfa2e81e6b140ba5fe44307
|\ \  Merge: 40a4ea7 e72ed0b
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Jul 7 00:10:08 2011 -0700
| | | 
| | |     Merge pull request #177 from frx/streaming_1
| | |     
| | |     OnlineSVMSGD with associated classes
| | |    
| * | commit e72ed0bd7f20e8117fadd1c2d9814bb71770bc60
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Thu Jul 7 08:03:37 2011 +0530
| | | 
| | |     Made an online version of sgd - OnlineSVMSGD, based on the original SVMSGD in shogun.
| | | 
| | | A	src/libshogun/classifier/svm/OnlineSVMSGD.cpp
| | | A	src/libshogun/classifier/svm/OnlineSVMSGD.h
| | | M	src/libshogun/classifier/svm/SVMSGD.h
| | | A	src/libshogun/machine/OnlineLinearMachine.cpp
| | | A	src/libshogun/machine/OnlineLinearMachine.h
| | |    
| * | commit 9f7011e344917dc1200a55878b97abdb4b63db5c
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Thu Jul 7 07:40:32 2011 +0530
| | | 
| | |     Trivial commit.
| | | 
| | | M	src/libshogun/features/StreamingDotFeatures.h
| | |    
| * | commit 04b8112a6633a9ea68773b754e462e60bae07a43
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Tue Jul 5 01:36:34 2011 +0530
| |   
| |       Added a function to cancel the parse thread. And another to expand a vector upto the dimensionality of the features in StreamingDotFeatures.
| |   
| |   M	src/libshogun/classifier/svm/SVMSGD.h
| |   M	src/libshogun/features/StreamingDotFeatures.h
| |   M	src/libshogun/features/StreamingSimpleFeatures.h
| |   M	src/libshogun/lib/InputParser.h
| |   M	src/libshogun/lib/ParseBuffer.h
| |   
* | commit 40a4ea7c3a8d8bc1acca7de6417b9a1acbf41869
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Jul 7 04:19:13 2011 +0400
| | 
| |     Another one crazy fix for dgetri wrapper
| | 
| | M	src/libshogun/lib/lapack.cpp
| |   
* | commit 502bd568b5cab63e9a89cb0d0203463bafe60abe
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Jul 7 04:16:31 2011 +0400
| | 
| |     Fix for wrappers
| | 
| | M	src/libshogun/lib/lapack.cpp
| | M	src/libshogun/lib/lapack.h
| |   
* | commit a827fb9e4312a075a21ee25614947d4c8e49f8df
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Jul 7 04:09:58 2011 +0400
| | 
| |     Fix for dgetri definition
| | 
| | M	src/libshogun/lib/lapack.h
| |   
* | commit 06c39dfb2f0c4e90179cff956bdd0edc0847eebd
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Jul 7 04:06:44 2011 +0400
| | 
| |     Fix for dgetr{i,f}
| | 
| | M	src/libshogun/lib/lapack.cpp
| | M	src/libshogun/lib/lapack.h
| |     
* |   commit ae673e4eb61c5e150a1d6ec7cc2f495dd24b487e
|\ \  Merge: 6b14520 120604e
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Jul 7 02:02:01 2011 +0200
| | | 
| | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | |    
| * | commit 120604e8b2fcefa4ee9f630a239944cba19166e5
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu Jul 7 03:58:53 2011 +0400
| | | 
| | |     An attempt to make arpack compile without atlas
| | | 
| | | M	src/libshogun/lib/arpack.cpp
| | | M	src/libshogun/lib/lapack.cpp
| | | M	src/libshogun/lib/lapack.h
| | |    
| * | commit 30ca8a35331174f6cf49baf02b424f3e6d07227c
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu Jul 7 03:14:31 2011 +0400
| | | 
| | |     Fixed compilation error of arpack wrapper
| | | 
| | | M	src/libshogun/lib/arpack.cpp
| | | M	src/libshogun/lib/arpack.h
| | |    
| * | commit e44411c5cb95a56531ff9f589557f654c20fb2f1
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu Jul 7 02:44:13 2011 +0400
| | | 
| | |     ARPACK wrapper improvements
| | | 
| | | M	src/libshogun/lib/arpack.cpp
| | |    
| * | commit fb9607384b61a783346a72b11442bd03af5cea93
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu Jul 7 02:15:06 2011 +0400
| | | 
| | |     Some more doc for dimreduction preprocessors
| | | 
| | | M	src/libshogun/preprocessor/ClassicIsomap.h
| | | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | M	src/libshogun/preprocessor/ClassicMDS.h
| | | M	src/libshogun/preprocessor/DimensionReductionPreprocessor.h
| | | M	src/libshogun/preprocessor/Isomap.h
| | | M	src/libshogun/preprocessor/LandmarkIsomap.h
| | | M	src/libshogun/preprocessor/LandmarkMDS.h
| | | M	src/libshogun/preprocessor/Preprocessor.h
| | |    
* | | commit 6b14520c511729377fccefab2467d287d5ef28c3
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Jul 7 02:01:31 2011 +0200
| | | 
| | |     add helper function to compute 3x2 table
| | | 
| | | M	src/libshogun/features/SNPFeatures.cpp
| | | M	src/libshogun/features/SNPFeatures.h
| | |    
* | | commit c0e495d47437f666c2d4308dc705a77901f787fb
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Thu Jul 7 02:01:12 2011 +0200
| |   
| |       remove obsolete swig wrapper
| |   
| |   M	src/libshogun/machine/LinearMachine.h
| |     
* |   commit 172024edef5b6de876e7cd82ea6b5a0ef05d26d3
|\ \  Merge: db4dbc6 e04e91c
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jul 6 08:52:42 2011 -0700
| | | 
| | |     Merge pull request #176 from sploving/master
| | |     
| | |     add some preprocessor examples
| | |    
| * | commit e04e91c70dc6b20fa8501161436bb47847929e1e
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Wed Jul 6 23:33:38 2011 +0800
| | | 
| | |     add some preprocessor examples
| | | 
| | | A	examples/undocumented/java_modular/preprocessor_classicmds_modular.java
| | | A	examples/undocumented/java_modular/preprocessor_isomap_modular.java
| | | A	examples/undocumented/java_modular/preprocessor_kernelpcacut_modular.java
| | | A	examples/undocumented/java_modular/preprocessor_landmarkmds_modular.java
| | | A	examples/undocumented/java_modular/preprocessor_locallylinearembedding_modular.java
| | | A	examples/undocumented/java_modular/preprocessor_logplusone_modular.java
| | |      
* | |   commit db4dbc6543098e7dccf9601a331ca4f6c3388c00
|\ \ \  Merge: cfc559d 7850285
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Wed Jul 6 07:48:26 2011 -0700
| | |   
| | |       Merge pull request #175 from sploving/master
| | |       
| | |       add memleak example
| | |    
| * | commit 785028541fb88520b4d2083e049a6bf793073dec
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Wed Jul 6 22:45:21 2011 +0800
| | | 
| | |     add tests_check_commonwordkernel_memleak_modular example
| | | 
| | | A	examples/undocumented/java_modular/tests_check_commwordkernel_memleak_modular.java
| | |    
* | | commit cfc559dbebc9b6ee762c6a93956d055feb470356
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jul 6 13:18:43 2011 +0200
| | | 
| | |     (temporary?) fix for java & regression: since LibSVR etc are derived
| | |     from SVM (which is in module classifiers) we need to import Classifiers
| | |     too (in Regression.i and also in the regression*.java examples) to fix
| | |     compilation issues.
| | | 
| | | M	examples/undocumented/java_modular/regression_krr_modular.java
| | | M	examples/undocumented/java_modular/regression_libsvr_modular.java
| | | M	examples/undocumented/java_modular/regression_svrlight_modular.java
| | | M	src/modular/Regression.i
| | |      
* | |   commit f23f64aa00b584ec23acaccd72d8ec7dcb8d8e19
|\ \ \  Merge: 2fc6eb1 d05e6bb
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Wed Jul 6 01:32:06 2011 -0700
| | |   
| | |       Merge pull request #173 from sploving/master
| | |       
| | |       improve typemap for jblas
| | |    
| * | commit d05e6bbf6e7a106d0c6025152760557ab4fcca5e
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Wed Jul 6 16:28:12 2011 +0800
| | | 
| | |     improve jblas typemap for various types
| | | 
| | | M	src/java_modular/swig_typemaps.i
| | |      
* | |   commit 2fc6eb121853861bb0a06ea9a86ddb89d86ed38b
|\ \ \  Merge: e7e71c8 6e66f91
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Wed Jul 6 00:26:08 2011 -0700
| | |   
| | |       Merge pull request #172 from sploving/master
| | |       
| | |       support other types for jblas and add regression examples
| | |    
| * | commit 6e66f91f175f8a11bbb818d8a34a34e16e5bbaf5
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Wed Jul 6 15:20:15 2011 +0800
| | | 
| | |     add regression examples for java_modular
| | | 
| | | A	examples/undocumented/java_modular/regression_krr_modular.java
| | | A	examples/undocumented/java_modular/regression_libsvr_modular.java
| | | A	examples/undocumented/java_modular/regression_svrlight_modular.java
| | |    
| * | commit 59fe8420b2c562dc5d8957a744c6c333283698e8
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Wed Jul 6 15:19:02 2011 +0800
| | | 
| | |     support other types for jblas
| | | 
| | | M	src/java_modular/swig_typemaps.i
| | |      
* | |   commit e7e71c81a5f6e9da2ab965d6839b1f4358131a1b
|\ \ \  Merge: f97613f 8e55cd8
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 5 23:55:20 2011 -0700
| | | | 
| | | |     Merge pull request #171 from frx/streamingfile
| | | |     
| | | |     Removed unnecessary macro definitions of the get_vector functions
| | | |     
| * | | commit 8e55cd86b64bee9b6ac64f4fdf94577d77f6c43a
|/ / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | |   Date:   Wed Jul 6 02:38:11 2011 +0530
| | |   
| | |       Removed unnecessary macro definitions of the get_vector functions in StreamingFileFrom*Features.
| | |   
| | |   M	src/libshogun/lib/StreamingFileFromSimpleFeatures.h
| | |   M	src/libshogun/lib/StreamingFileFromSparseFeatures.h
| | |   M	src/libshogun/lib/StreamingFileFromStringFeatures.h
| | |    
* | | commit f97613f72a8527391fc23879169b43ce7643a0e5
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Jul 6 00:31:53 2011 +0400
| | | 
| | |     Removed junk at arpack wrapper
| | | 
| | | M	src/libshogun/lib/arpack.cpp
| | |    
* | | commit 0440c9058310fd1f7acf7220ae0dd7d54e917bb1
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Jul 6 00:30:20 2011 +0400
| | | 
| | |     Arpack wrapper improvements
| | | 
| | | M	src/libshogun/lib/arpack.cpp
| | | M	src/libshogun/lib/arpack.h
| | |    
* | | commit fbbd60b81534c502755a9a8767604ccc88a4ca3e
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue Jul 5 22:57:59 2011 +0400
| | | 
| | |     Get this shit to compile
| | | 
| | | M	src/modular/Classifier.i
| | | M	src/modular/Regression.i
| | |    
* | | commit b4af03be91c1b34448153e09802038eb7815362a
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jul 5 16:20:09 2011 +0200
| | | 
| | |     add missing %import to fix compilation issue of kernel_io_modular
| | | 
| | | M	src/modular/Kernel.i
| | |      
* | |   commit 41a8c9911c36ba5db813cd6ccc6a766889bdc3a4
|\ \ \  Merge: 93ea9dd fe784a5
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Tue Jul 5 07:04:49 2011 -0700
| | |   
| | |       Merge pull request #170 from sploving/master
| | |       
| | |       add some kernel example for java_modular
| | |    
| * | commit fe784a59fcc8491a33d5d443757dc662b94081ee
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Tue Jul 5 21:11:58 2011 +0800
| | | 
| | |     add some kernel exmaples for java_modular
| | | 
| | | A	examples/undocumented/java_modular/kernel_gaussian_modular.java
| | | A	examples/undocumented/java_modular/kernel_gaussian_shift_modular.java
| | | A	examples/undocumented/java_modular/kernel_inversemultiquadric_modular.java
| | | A	examples/undocumented/java_modular/kernel_io_modular.java
| | | A	examples/undocumented/java_modular/kernel_linear_modular.java
| | | A	examples/undocumented/java_modular/kernel_linear_string_modular.java
| | | A	examples/undocumented/java_modular/kernel_local_alignment_string_modular.java
| | | A	examples/undocumented/java_modular/kernel_locality_improved_string_modular.java
| | |    
| | * commit ce84d3f2939f60dda99c5cf647a11f4b737bc198
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Jul 7 10:40:00 2011 +0200
| | | 
| | |     more work on example
| | | 
| | | M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| | |    
| | * commit d350274eb981dcb8b9cbc268b1ba93490a4ec4c9
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Jul 7 10:39:40 2011 +0200
| | | 
| | |     made CParameterCombination inherit from CSGObject
| | |     added init method and parameter registration
| | | 
| | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | M	src/libshogun/modelselection/ParameterCombination.h
| | |    
| | * commit 6d1bddc8fe4dbb874dfccc62fdac254485257a20
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jul 6 16:24:24 2011 +0200
| | | 
| | |     made ParameterCombination an SGObject by renaming it to CParameterCombination
| | | 
| | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| | | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | | M	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | | M	src/libshogun/modelselection/GridSearchModelSelection.h
| | | M	src/libshogun/modelselection/ModelSelection.h
| | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | M	src/libshogun/modelselection/ParameterCombination.h
| | |    
| | * commit bee986180590fc7f2d19f34919ddd7953b47a6d7
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jul 6 16:11:40 2011 +0200
| | | 
| | |     -ModelSelectionParameters::get_combinations() now returns a new DynArray instance instead of filling a provided one.
| | |     -applied all necessary memory management changes
| | | 
| | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | |    
| | * commit 6b5355644e3b1388515847f70fe135342b006b36
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jul 6 16:11:28 2011 +0200
| | | 
| | |     -ModelSelectionParameters::get_combinations() now returns a new DynArray instance instead of filling a provided one.
| | |     -applied all necessary memory management changes
| | | 
| | | M	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | |    
| | * commit d149c6908a202adf9a218dbcbcb2763e3f41372a
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jul 6 14:39:18 2011 +0200
| | | 
| | |     applied method rename
| | | 
| | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| | | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | |    
| | * commit 439dcf294971f23a899efea485ee05054abf6624
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jul 6 14:38:48 2011 +0200
| | | 
| | |     added type for ParameterCombination DynArray
| | | 
| | | M	src/modular/Modelselection.i
| | |    
| | * commit 2928183cf3fbc928852300509d161766433ba237
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jul 6 14:38:31 2011 +0200
| | | 
| | |     -renamed print method to print_tree
| | | 
| | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | M	src/libshogun/modelselection/ParameterCombination.h
| | |    
| | * commit e6d2e4f357a0f8976958cd0e54118a8cb0c57d95
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jul 6 14:38:18 2011 +0200
| | | 
| | |     -changed destroy method to unref_child method
| | |     -nodes now SG_REF their children
| | |     -renamed print method to print_tree
| | | 
| | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | |    
| | * commit cab1084acb4845ab68501a85763790aad4361db8
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jul 5 17:35:41 2011 +0200
| | | 
| | |     first example for model selection in python_modular
| | | 
| | | A	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| | |    
| | * commit 8fdbde06e9ba5b912f989f08d48bf234a9ed9877
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/|   Date:   Tue Jul 5 17:33:50 2011 +0200
| |   
| |       initial work on python_modular interface for model selection
| |   
| |   A	src/modular/Modelselection.doxy
| |   A	src/modular/Modelselection.i
| |   A	src/modular/Modelselection_includes.i
| |   
* | commit 93ea9dded11a377bd6a15600447d4721431d6cc6
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 5 08:43:45 2011 +0200
| | 
| |     Fix compilation error in classic mds.
| | 
| | M	src/libshogun/preprocessor/ClassicMDS.cpp
| |     
* |   commit a5bffe36e859ff60a7dfabae64cfa4317246c560
|\ \  Merge: ccfa941 8eec45c
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 4 23:37:57 2011 -0700
| | | 
| | |     Merge pull request #169 from frx/streamingfile
| | |     
| | |     StreamingFile structure changes, updated for String and SparseFeatures
| | |    
| * | commit 8eec45cb15a85ae0b0a23bd4c9ccdd8c26d5bee8
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Tue Jul 5 03:39:33 2011 +0530
| | | 
| | |     Implemented overloading in streaming sparse and string files. Removed the get_vector template declaration in them.
| | | 
| | | M	src/libshogun/lib/StreamingFile.h
| | | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.h
| | | D	src/libshogun/lib/StreamingFileFromSparseFeatures.cpp
| | | M	src/libshogun/lib/StreamingFileFromSparseFeatures.h
| | | D	src/libshogun/lib/StreamingFileFromStringFeatures.cpp
| | | M	src/libshogun/lib/StreamingFileFromStringFeatures.h
| | |    
| * | commit 8e5ff1c027de0eedba7c04c7cc5cca232198b6d8
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Jul 4 04:56:03 2011 +0530
| | | 
| | |     Changed structure of StreamingFile.
| | |     StreamingFile now only uses overloaded get_vector, get_vector_and_label, get_sparse_vector, etc. instead of explicitly labelled get_bool_vector, get_real_vector, etc.
| | |     Changes made in accordance with this made for all the derived classes, which are templated and implement overloaded get_vector/get_sparse_vector etc functions depending on class type parameter.
| | |     Fixed the finalize_example and do_delete behaviour in the parser.
| | | 
| | | M	src/libshogun/features/StreamingSparseFeatures.h
| | | M	src/libshogun/features/StreamingStringFeatures.h
| | | M	src/libshogun/lib/InputParser.h
| | | M	src/libshogun/lib/ParseBuffer.h
| | | M	src/libshogun/lib/StreamingAsciiFile.cpp
| | | M	src/libshogun/lib/StreamingAsciiFile.h
| | | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.h
| | |    
| * | commit fa2600111784a872bd4cc735a18a281ac5ba594d
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Jul 4 02:21:22 2011 +0530
| | | 
| | |     StreamingFile no longer derives from CFile. Unnecessary write/matrix functions removed.
| | | 
| | | M	src/libshogun/lib/StreamingAsciiFile.cpp
| | | M	src/libshogun/lib/StreamingAsciiFile.h
| | | M	src/libshogun/lib/StreamingFile.cpp
| | | M	src/libshogun/lib/StreamingFile.h
| | |    
| * | commit 7df5bebe141ba7822e4f495fd2a4cb730dcc5873
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sun Jul 3 23:54:36 2011 +0530
| | | 
| | |     Made the StreamingFileFromSimpleFeatures class templated so that get_vector<T>, get_vector_and_label<T>, get_sparse_vector<T>, etc.
| | |     have to be used for vector reading. The .cpp file had to be appended to the header.
| | | 
| | | M	examples/undocumented/libshogun/streaming_from_simple.cpp
| | | M	src/libshogun/features/StreamingSimpleFeatures.h
| | | M	src/libshogun/features/StreamingSparseFeatures.h
| | | M	src/libshogun/features/StreamingStringFeatures.h
| | | M	src/libshogun/lib/StreamingFile.cpp
| | | M	src/libshogun/lib/StreamingFile.h
| | | D	src/libshogun/lib/StreamingFileFromSimpleFeatures.cpp
| | | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.h
| | |    
| * | commit e427285e36fc7ef5385ab7dd70d1d0c6aa7da445
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sun Jul 3 18:44:26 2011 +0530
| | | 
| | |     dense_dot_range function for StreamingDotFeatures. Testing still remains.
| | | 
| | | M	src/libshogun/features/StreamingDotFeatures.h
| | |    
| * | commit 239606858dcc3db9011c78e900722b187452760b
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sun Jul 3 03:01:03 2011 +0530
| | | 
| | |     Converted dense_dot, add_to_dense_vec to work with regular vectors rather than SGVectors.
| | | 
| | | M	src/libshogun/features/StreamingDotFeatures.h
| | | M	src/libshogun/features/StreamingSimpleFeatures.h
| | | M	src/libshogun/features/StreamingSparseFeatures.h
| | |    
| * | commit 12bca9c2e2c22c8ae3441dd7bad7c86d5fa19e94
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sat Jul 2 20:33:08 2011 +0530
| | | 
| | |     Added seekable property, and reset_stream() to StreamingFeatures. Moved the StreamingFile object up to the base class StreamingFeatures.
| | | 
| | | M	src/libshogun/features/StreamingDotFeatures.h
| | | M	src/libshogun/features/StreamingFeatures.h
| | | M	src/libshogun/features/StreamingSimpleFeatures.h
| | | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.h
| | |    
| * | commit 73bf1ca089709a6fff146259325df504fef65703
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sat Jul 2 01:02:44 2011 +0530
| | | 
| | |     git add on StreamingFileFromStringFeatures.*
| | | 
| | | A	src/libshogun/lib/StreamingFileFromStringFeatures.cpp
| | | A	src/libshogun/lib/StreamingFileFromStringFeatures.h
| | |    
| * | commit d70e504332842d21b269e25b5d34b9cd3b034027
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sat Jul 2 00:59:10 2011 +0530
| | | 
| | |     StreamingSimpleFeatures can now directly be initialized with a SimpleFeatures object instead of explicitly creating a StreamingFileFromSimpleFeatures first.
| | |     Added label support to the example.
| | | 
| | | M	examples/undocumented/libshogun/streaming_from_simple.cpp
| | | M	src/libshogun/features/StreamingDotFeatures.h
| | | M	src/libshogun/features/StreamingSimpleFeatures.h
| | | M	src/libshogun/lib/StreamingFile.cpp
| | |    
| * | commit d519f491b15eec050287996f178833323d581add
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Fri Jul 1 23:41:56 2011 +0530
| | | 
| | |     Added labels support for StreamingFileFromFeatures.
| | |     Made the corresponding versions for StringFeatures and SparseFeatures.
| | | 
| | | M	src/libshogun/lib/StreamingFileFromFeatures.cpp
| | | M	src/libshogun/lib/StreamingFileFromFeatures.h
| | | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.cpp
| | | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.h
| | | A	src/libshogun/lib/StreamingFileFromSparseFeatures.cpp
| | | A	src/libshogun/lib/StreamingFileFromSparseFeatures.h
| | |    
* | | commit ccfa941b00dd069ea10e0b7c06c000914a44d37f
|/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |   Date:   Tue Jul 5 01:26:49 2011 +0400
| |   
| |       Fixed segfault at ClassicMDS eigenvalues vector
| |   
| |   M	src/libshogun/preprocessor/ClassicMDS.cpp
| |     
* |   commit 414534f1e9b0f48865b7dd9ef415310fa751ee67
|\ \  Merge: e2c834b 87f2965
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Mon Jul 4 08:56:06 2011 -0700
| |   
| |       Merge pull request #168 from sploving/master
| |       
| |       add some kernel example for java_modular
| |   
| * commit 87f29650a243277c9ad145116cb110b7fc882b32
| | Author: Baozeng Ding <sploving1@gmail.com>
| | Date:   Mon Jul 4 23:46:27 2011 +0800
| | 
| |     add some kernel examples for java_modular
| | 
| | A	examples/undocumented/java_modular/kernel_log_modular.java
| | A	examples/undocumented/java_modular/kernel_match_word_string_modular.java
| | A	examples/undocumented/java_modular/kernel_multiquadric_modular.java
| | A	examples/undocumented/java_modular/kernel_oligo_string_modular.java
| |   
* | commit e2c834b85a2a5f098dc4cc4534f53cf1011d52b5
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jul 4 09:13:04 2011 +0200
| | 
| |     Follow Shashwat Lal Das nice suggestion and use overloading for
| |     get_vector and related functions.
| | 
| | M	src/cmdline/CmdLineInterface.cpp
| | M	src/cmdline/CmdLineInterface.h
| | M	src/libshogun/features/Labels.cpp
| | M	src/libshogun/features/SimpleFeatures.h
| | M	src/libshogun/features/SparseFeatures.h
| | M	src/libshogun/features/StreamingSimpleFeatures.h
| | M	src/libshogun/features/StringFeatures.h
| | M	src/libshogun/kernel/Kernel.cpp
| | M	src/libshogun/lib/AsciiFile.cpp
| | M	src/libshogun/lib/AsciiFile.h
| | M	src/libshogun/lib/BinaryFile.cpp
| | M	src/libshogun/lib/BinaryFile.h
| | M	src/libshogun/lib/File.cpp
| | M	src/libshogun/lib/File.h
| | M	src/libshogun/lib/HDF5File.cpp
| | M	src/libshogun/lib/HDF5File.h
| | M	src/libshogun/lib/StreamingAsciiFile.cpp
| | M	src/libshogun/lib/StreamingAsciiFile.h
| | M	src/libshogun/lib/StreamingFile.cpp
| | M	src/libshogun/lib/StreamingFile.h
| | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.cpp
| | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/libshogunui/SGInterface.h
| | M	src/matlab/MatlabInterface.cpp
| | M	src/matlab/MatlabInterface.h
| | M	src/octave/OctaveInterface.cpp
| | M	src/octave/OctaveInterface.h
| | M	src/python/PythonInterface.cpp
| | M	src/python/PythonInterface.h
| | M	src/r/RInterface.cpp
| | M	src/r/RInterface.h
| |     
* |   commit aa41ac57c20b5ecb3bd8fb224fcdea550f5a4aa9
|\ \  Merge: bf05670 0200985
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Sun Jul 3 22:52:57 2011 -0700
| |   
| |       Merge pull request #167 from sploving/master
| |       
| |       add some java kernel examples
| |   
| * commit 0200985df1d6112d4844169aab046445a0e1ba70
| | Author: Baozeng Ding <sploving1@gmail.com>
| | Date:   Sun Jul 3 22:30:31 2011 +0800
| | 
| |     add some java kernel examples
| | 
| | A	examples/undocumented/java_modular/kernel_poly_modular.java
| | A	examples/undocumented/java_modular/kernel_power_modular.java
| | A	examples/undocumented/java_modular/kernel_rationalquadratic_modular.java
| | A	examples/undocumented/java_modular/kernel_sigmoid_modular.java
| | A	examples/undocumented/java_modular/kernel_simple_locality_improved_string_modular.java
| | A	examples/undocumented/java_modular/kernel_spherical_modular.java
| | A	examples/undocumented/java_modular/kernel_tstudent_modular.java
| | A	examples/undocumented/java_modular/kernel_wave_modular.java
| | A	examples/undocumented/java_modular/kernel_wavelet_modular.java
| | A	examples/undocumented/java_modular/kernel_weighted_comm_word_string_modular.java
| |   
* | commit bf05670b8cd712923010aabe5f247931109a2b7c
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Jul 4 01:09:21 2011 +0400
| | 
| |     ARPACK-related fixes for ClassicMDS
| | 
| | M	src/libshogun/preprocessor/ClassicMDS.cpp
| |   
* | commit abf5a9de256061b477fff57df03835852b939864
|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|   Date:   Mon Jul 4 01:08:14 2011 +0400
|   
|       Fixes and improvements for arpack wrapper
|   
|   M	src/libshogun/lib/arpack.cpp
|   M	src/libshogun/lib/arpack.h
|    
*   commit 69e129191ffe3ebe11646d64643d54885772abab
|\  Merge: 9d54d81 df56be0
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Jul 2 11:47:09 2011 -0700
| | 
| |     Merge pull request #165 from alesis/gmm
| |     
| |     Added set_* for GMM and cluster methods
| |   
| * commit df56be006714eea59924737e46132293a3f8684d
|/  Author: Alesis Novik <alesisnov@gmail.com>
|   Date:   Sat Jul 2 18:21:09 2011 +0100
|   
|       Added set_* for GMM
|   
|   M	src/libshogun/clustering/GMM.cpp
|   M	src/libshogun/clustering/GMM.h
|    
*   commit 9d54d81a3771fe4ada120e41055ee06ad5e010e6
|\  Merge: 7a576ae b489910
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Jul 2 04:17:09 2011 -0700
| | 
| |     Merge pull request #164 from alesis/gmm
| |     
| |     GMM overhaul with SG*
| |   
| * commit b4899108a99dac3b308833d25826ae3400b936af
| | Author: Alesis Novik <alesisnov@gmail.com>
| | Date:   Sat Jul 2 00:37:11 2011 +0100
| | 
| |     Bug fixes for GMM
| | 
| | M	src/libshogun/clustering/GMM.cpp
| |   
| * commit 45938db32d958280984737f9b056d8b960d2d43b
|/  Author: Alesis Novik <alesisnov@gmail.com>
|   Date:   Fri Jul 1 22:15:22 2011 +0100
|   
|       Migrating to SG*
|   
|   M	src/libshogun/clustering/GMM.cpp
|   M	src/libshogun/clustering/GMM.h
|   M	src/libshogun/distributions/Gaussian.cpp
|   M	src/libshogun/distributions/Gaussian.h
|    
*   commit 7a576ae06db642dc0e21ec3a9aa3d392d2e99598
|\  Merge: b8bcb1c a879603
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jul 1 22:55:49 2011 +0200
| | 
| |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| |   
| * commit a8796035423fa3fe1ee78966ccab958346453fff
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Jul 2 00:25:07 2011 +0400
| | 
| |     ClassicMDS: Added warning for inconsistent embeddings, doc fixes
| | 
| | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | M	src/libshogun/preprocessor/ClassicMDS.h
| |   
| * commit ffa80d7fb0c45b83baa03b67f8553c94a68fdc31
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Jul 1 23:48:13 2011 +0400
| | 
| |     Fixed doc and some more at gaussian naive bayes
| | 
| | M	src/libshogun/classifier/GaussianNaiveBayes.h
| |   
* | commit b8bcb1c45f0aca535a8a72f9e66cc8e321e72da0
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jul 1 22:55:15 2011 +0200
| | 
| |     get all octave_modular examples back to work
| | 
| | M	examples/undocumented/octave_modular/classifier_libsvm_minimal_modular.m
| | M	examples/undocumented/octave_modular/distance_canberraword_modular.m
| | M	examples/undocumented/octave_modular/distance_hammingword_modular.m
| | M	examples/undocumented/octave_modular/distance_manhattenword_modular.m
| | M	examples/undocumented/octave_modular/distribution_histogram_modular.m
| | M	examples/undocumented/octave_modular/distribution_hmm_modular.m
| | M	examples/undocumented/octave_modular/distribution_linearhmm_modular.m
| | M	examples/undocumented/octave_modular/kernel_comm_ulong_string_modular.m
| | M	examples/undocumented/octave_modular/kernel_comm_word_string_modular.m
| | M	examples/undocumented/octave_modular/kernel_linear_byte_modular.m
| | M	examples/undocumented/octave_modular/kernel_linear_word_modular.m
| | M	examples/undocumented/octave_modular/kernel_matchwordstring_modular.m
| | M	examples/undocumented/octave_modular/kernel_poly_match_word_string.m
| | M	examples/undocumented/octave_modular/kernel_sparsegaussian_modular.m
| | M	examples/undocumented/octave_modular/kernel_sparselinear_modular.m
| | M	examples/undocumented/octave_modular/kernel_sparsepoly_modular.m
| | M	examples/undocumented/octave_modular/kernel_top_modular.m
| | M	examples/undocumented/octave_modular/kernel_weighted_comm_word_string_modular.m
| | M	examples/undocumented/octave_modular/preproc_logplusone_modular.m
| | M	examples/undocumented/octave_modular/preproc_normone_modular.m
| | M	examples/undocumented/octave_modular/preproc_prunevarsubmean_modular.m
| | M	examples/undocumented/octave_modular/tools/load_matrix.m
| | M	src/libshogun/kernel/PolyKernel.cpp
| | M	src/libshogun/kernel/PolyKernel.h
| | M	src/octave_modular/swig_typemaps.i
| |   
* | commit 9be4b76452b747a7253d7b63c7993682e4b31d25
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jul 1 21:45:49 2011 +0200
| | 
| |     remove SG_NOTIMPLEMENTED
| | 
| | M	src/libshogun/features/SimpleFeatures.h
| |   
* | commit 99686782a794105243d3bb7d9b6d3ca0b32a4981
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jul 1 21:45:13 2011 +0200
| | 
| |     add make install to java_modular
| | 
| | M	src/Makefile.template
| |   
* | commit 489c880a2e2bbc737a46ce5fc4ae16dd83bb17d2
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Fri Jul 1 21:44:49 2011 +0200
|   
|       disable nested struct swig warning
|   
|   M	src/configure
|  
* commit de52e68d28aec040b16627b6ece89bb96db47a33
| Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| Date:   Fri Jul 1 15:01:44 2011 +0200
| 
|     fixed a segfault bug as pointed out by Jonas Behr
| 
| M	src/libshogun/features/StringFeatures.h
|  
* commit 3725079561c64163e622906614dd8a306624c260
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Jul 1 15:02:19 2011 +0400
| 
|     Codestyle fixes for LocallyLinearEmbedding
| 
| M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
|  
* commit 473aefb8324687fd766e296dc7ee448f357e996d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jul 1 11:55:31 2011 +0200
| 
|     require new version of data
| 
| M	data
|    
*   commit 38218704dc8d88a777970756288d6ae76556180c
|\  Merge: 23bb602 490545f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jul 1 02:54:17 2011 -0700
| | 
| |     Merge pull request #161 from frx/streaming_1
| |     
| |     Made some changes for the delete[] to be called optionally after release
| |   
| * commit 490545faf17e5f958f5a06839dab57f1064c543b
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Fri Jul 1 04:58:54 2011 +0530
| | 
| |     Made some changes for the delete[] to be called optionally after release of example from the parser.
| | 
| | M	src/libshogun/features/StreamingSimpleFeatures.h
| | M	src/libshogun/lib/InputParser.h
| | M	src/libshogun/lib/ParseBuffer.h
| |     
* |   commit 23bb602ec186ef8bb92f732681cd9626ff935e36
|\ \  Merge: dd517a0 0bfb38f
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Thu Jun 30 16:15:31 2011 -0700
| |   
| |       Merge pull request #160 from frx/streaming_1
| |       
| |       Streaming*File changes as per other pull request
| |   
| * commit 0bfb38fe2d40fbec0ad65550c45ed6645fdb7557
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Fri Jul 1 04:37:58 2011 +0530
| | 
| |     Fixed the example to use SG_SPRINT instead of SG_PRINT
| | 
| | M	examples/undocumented/libshogun/streaming_from_simple.cpp
| |     
| *   commit 1265221eadc27c75069fb486a9639539e7ad9032
| |\  Merge: 355bcd0 dd517a0
| |/  Author: Shashwat Lal Das <fraggerx@gmail.com>
|/|   Date:   Fri Jul 1 04:26:10 2011 +0530
| |   
| |       Merge branch 'master' of https://github.com/shogun-toolbox/shogun into streaming_1
| |   
* | commit dd517a0447ede38cfe442b8f9bd956c4a14ea691
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Jul 1 02:50:01 2011 +0400
| | 
| |     Fix for arpack.cpp
| | 
| | M	src/libshogun/lib/arpack.cpp
| |   
| * commit 355bcd09f18aae229de8707a6bbb2726b284a186
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Fri Jul 1 04:13:49 2011 +0530
| | 
| |     SG_ERROR replaces some left out SG_INFOs
| | 
| | M	src/libshogun/lib/StreamingFile.cpp
| |   
| * commit a9743bc777e0cc887e49d3e23121ff5b4db36562
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Fri Jul 1 04:11:58 2011 +0530
| | 
| |     Replace FP_DOT with FP_STREAMING_DOT for StreamingDotFeatures
| | 
| | M	src/libshogun/features/FeatureTypes.h
| | M	src/libshogun/features/StreamingDotFeatures.h
| |   
| * commit 8547617350cb6cfc67d68ade0723ed25886539d3
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Fri Jul 1 04:05:09 2011 +0530
| | 
| |     SG_PRINTF = SG_PRINT
| | 
| | M	examples/undocumented/libshogun/streaming_from_simple.cpp
| |   
| * commit 116fc2bfdbe9e09a87bb194ccb61dc4dcd139b7d
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Fri Jul 1 03:56:15 2011 +0530
| | 
| |     Changes as per pull request comments: void removal, SG_ERROR, SG_PRINTF etc
| | 
| | M	examples/undocumented/libshogun/streaming_from_simple.cpp
| | M	src/libshogun/lib/StreamingAsciiFile.cpp
| | M	src/libshogun/lib/StreamingAsciiFile.h
| | M	src/libshogun/lib/StreamingFile.cpp
| | M	src/libshogun/lib/StreamingFile.h
| | M	src/libshogun/lib/StreamingFileFromFeatures.cpp
| | M	src/libshogun/lib/StreamingFileFromFeatures.h
| | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.cpp
| | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.h
| |   
| * commit 59c6e82d9ef000a73e90d47722af75db921a8f2a
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Tue Jun 28 23:36:50 2011 +0530
| | 
| |     Added FP_DOT property to StreamingDotFeatures
| | 
| | M	src/libshogun/features/StreamingDotFeatures.h
| |   
| * commit d21f541b8837b8cd4a9d8886cde4c8a53dc35fd4
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Tue Jun 28 20:55:19 2011 +0530
| | 
| |     Added an example to demonstrate use of SimpleFeatures as StreamingFeatures input.
| | 
| | A	examples/undocumented/libshogun/streaming_from_simple.cpp
| |   
| * commit a0713bcf12fd552b787d34c804592f97724ab1a0
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Tue Jun 28 19:16:20 2011 +0530
| | 
| |     Small but essential changes -- fixed constructor of StreamingFileFromFeatures etc so that a minimal example now works.
| | 
| | M	src/libshogun/features/StreamingSimpleFeatures.h
| | M	src/libshogun/lib/StreamingFileFromFeatures.cpp
| |   
| * commit b9b96bbbfb0eae1efdb2105a72cda8741b571fe1
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Tue Jun 28 19:00:58 2011 +0530
| | 
| |     Changes to previous commit so that compilation is successful. Moving around of functions a bit; nothing changes in the actual technique, however.
| | 
| | M	src/libshogun/features/StreamingSimpleFeatures.h
| | M	src/libshogun/lib/StreamingAsciiFile.cpp
| | M	src/libshogun/lib/StreamingAsciiFile.h
| | M	src/libshogun/lib/StreamingFile.cpp
| | M	src/libshogun/lib/StreamingFile.h
| | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.cpp
| | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.h
| |   
| * commit 163498b56d6bee4f685b9412c6d84250ca1fcd1f
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Tue Jun 28 18:09:40 2011 +0530
| | 
| |     First implementation of StreamingFileFromFeatures, StreamingAsciiFile and StreamingFileFromSimpleFeatures.
| | 
| | A	src/libshogun/lib/StreamingAsciiFile.cpp
| | A	src/libshogun/lib/StreamingAsciiFile.h
| | M	src/libshogun/lib/StreamingFile.cpp
| | M	src/libshogun/lib/StreamingFile.h
| | A	src/libshogun/lib/StreamingFileFromFeatures.cpp
| | A	src/libshogun/lib/StreamingFileFromFeatures.h
| | A	src/libshogun/lib/StreamingFileFromSimpleFeatures.cpp
| | A	src/libshogun/lib/StreamingFileFromSimpleFeatures.h
| |   
| * commit a2506bc9076b0a3420127bfc226a3a88c8e9bc8c
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Mon Jun 27 21:41:29 2011 +0530
| | 
| |     Added functions in StreamingSimpleFeatures to enable getting examples from a SimpleFeatures object.
| |     Added constructor for StreamingFile which takes a CFeatures pointer as argument.
| |     
| |     This is to be used along with obtain_from_simplefeatures() to get this behaviour to work.
| | 
| | M	src/libshogun/features/StreamingSimpleFeatures.h
| | M	src/libshogun/lib/StreamingFile.h
| |   
| * commit a0c3008fefd32555e7e556ae44df7bd27929326c
|/  Author: Shashwat Lal Das <fraggerx@gmail.com>
|   Date:   Mon Jun 27 21:13:35 2011 +0530
|   
|       Modify StreamingFile to take input from a SimpleFeatures object.
|   
|   M	src/libshogun/lib/StreamingFile.cpp
|   M	src/libshogun/lib/StreamingFile.h
|  
* commit 3e88af5b5a35a85e705e923773af70d53937b59d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Jul 1 02:08:07 2011 +0400
| 
|     Fix for swissroll graphical example
| 
| M	examples/undocumented/python_modular/graphical/swissroll.py
|  
* commit d79f50b86bee0af3fa1d2cd6163b9b1ce436c983
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Jul 1 01:55:42 2011 +0400
| 
|     Added swissroll python_modular graphical example
| 
| A	examples/undocumented/python_modular/graphical/swissroll.py
|  
* commit 35c6ef6eacf173a065089ce19d3b6c0a83fa1c0c
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Jul 1 01:36:09 2011 +0400
| 
|     Fix uppercase naming of MDSs
| 
| M	src/libshogun/preprocessor/ClassicMDS.h
| M	src/libshogun/preprocessor/LandmarkMDS.h
|  
* commit b54d7be61c89c20a4e46167eb38e398a26de7ad9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 30 22:20:30 2011 +0200
| 
|     Fix typo - void static -> should be static void
| 
| M	src/libshogun/features/SparseFeatures.h
|    
*   commit 884b32bca0a9a2f3194be44a2b8ea2682b56d2c0
|\  Merge: 523a175 3e09510
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jun 30 12:52:06 2011 -0700
| | 
| |     Merge pull request #158 from karlnapf/master
| |     
| |     subset support for sparse features
| |   
| * commit 3e0951022c31f5afb2dc00350361426397bca3e5
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 30 18:30:46 2011 +0200
| | 
| |     uncommented a line
| | 
| | M	examples/undocumented/libshogun/features_subset_simple_features.cpp
| |   
| * commit 30f4b34dd5d2d4801fa1b4ac4de46f90df5f8b9b
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 30 18:23:32 2011 +0200
| | 
| |     added comments
| | 
| | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| |   
| * commit 016e1ea3ea8d45ba6362d0db72928967201b20e9
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 30 18:23:26 2011 +0200
| | 
| |     -added check for transpose method
| |     -added free_feature_vector calls
| | 
| | M	examples/undocumented/libshogun/features_subset_simple_features.cpp
| |   
| * commit bb033438b550a6c85ea4795758734c4e29dd642b
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 30 18:17:58 2011 +0200
| | 
| |     made constructor not to copy but to directly use input matrix
| | 
| | M	src/libshogun/features/SimpleFeatures.h
| |   
| * commit efb1d95d7a5ed146099de60ae57f6ae84e738dd8
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 30 18:05:07 2011 +0200
| | 
| |     -added free_feature_vector method for SGVector
| |     -fixed a bug in get_transposed which ended in writting to non-allocated memory, also made the method more readable
| | 
| | M	src/libshogun/features/SimpleFeatures.h
| |   
| * commit 6f8dd8a6ac4fd7044e2495bbfeb5440db6a01acc
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 30 18:00:54 2011 +0200
| | 
| |     fixed forgotten initializer in copy constructor of SGVector
| | 
| | M	src/libshogun/lib/DataType.h
| |   
| * commit f8fdf76bd8fade90908cb78c8ba63b0dbd79416f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 30 17:23:21 2011 +0200
| | 
| |     make usage of free_sparse_feature_vector method
| | 
| | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| |   
| * commit 4ac8cc6512704538f5982f28e605ddd12fda5809
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 30 16:45:44 2011 +0200
| | 
| |     -simplification
| |     -transpose check for subset
| | 
| | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| |   
| * commit 5750e1c078cebb219317938a08a411f513f99b00
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 30 16:41:35 2011 +0200
| | 
| |     fixed a segfault
| | 
| | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| |   
| * commit f58641e1c02c27d524988cd0c092ecb06017b9b3
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 30 16:36:51 2011 +0200
| | 
| |     copy paste error fixed
| | 
| | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| |   
| * commit a54fd2ab7d5c74f3b37e142b110ca328fe59a0bc
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 30 16:00:30 2011 +0200
| | 
| |     added sparse features subset example
| | 
| | M	examples/undocumented/libshogun/Makefile
| |     
| *   commit f964a5bbca444e5c3e57c8acd92a58aaf69b238a
| |\  Merge: f87a94e 715f2a2
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Jun 30 15:57:13 2011 +0200
| | | 
| | |     Merge remote-tracking branch 'upstream/master'
| | |    
| * | commit f87a94e8cc962d88732b7a17d01000058189f212
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Jun 30 15:56:14 2011 +0200
| | | 
| | |     finished example for sparse features subset
| | | 
| | | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| | |      
| * |   commit 48b7e7b097776af5a85f485848dd11df19f51162
| |\ \  Merge: 69b8071 ded723b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jun 30 15:42:26 2011 +0200
| | | | 
| | | |     Merge branch 'master' into sparefeaturessubset
| | | |       
| * | |   commit 69b80717ce949889576be5c50ccf720357a0a8aa
| |\ \ \  Merge: 5f6911d 27b9479
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jun 30 14:15:18 2011 +0200
| | | | | 
| | | | |     Merge branch 'master' into sparefeaturessubset
| | | | |      
| * | | | commit 5f6911d435838ecc70da5e2a0101c795170191ec
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jun 30 14:01:36 2011 +0200
| | | | | 
| | | | |     added example/test for sparse features subset
| | | | | 
| | | | | A	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| | | | |      
| * | | | commit d01288e18dce2341efd203251e17282da2313698
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jun 30 14:00:34 2011 +0200
| | | | | 
| | | | |     more work on subset for sparse features
| | | | | 
| | | | | M	src/libshogun/features/SparseFeatures.h
| | | | |        
| * | | |   commit b688d5827142e920467280df1a65d7e3f634d9fe
| |\ \ \ \  Merge: a5985fd 7c7e3de
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Jun 30 12:20:51 2011 +0200
| | | | | | 
| | | | | |     Merge remote-tracking branch 'upstream/master' into sparefeaturessubset
| | | | | |       
| * | | | | commit a5985fdc3f728b0f71d9a3143dbb31aab85a07c9
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Jun 29 15:25:31 2011 +0200
| | | | | | 
| | | | | |     initial work on subset support for this class
| | | | | | 
| | | | | | M	src/libshogun/features/SparseFeatures.h
| | | | | |         
* | | | | |   commit 523a17502532e596898a70512acf96631d9c691a
|\ \ \ \ \ \  Merge: 964dcbd c3fdb27
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Thu Jun 30 22:51:49 2011 +0400
| | | | | | | 
| | | | | | |     Merge branch 'master' of git://github.com/sploving/shogun
| | | | | | |        
| * | | | | | commit c3fdb279cc0a6670c6e56812b218344783222e95
| | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | Date:   Thu Jun 30 23:54:00 2011 +0800
| | | | | | | 
| | | | | | |     add some examples
| | | | | | | 
| | | | | | | A	examples/undocumented/java_modular/kernel_comm_ulong_string_modular.java
| | | | | | | A	examples/undocumented/java_modular/kernel_comm_word_string_modular.java
| | | | | | | A	examples/undocumented/java_modular/kernel_distantsegments_modular.java
| | | | | | | A	examples/undocumented/java_modular/kernel_fixed_degree_string_modular.java
| | | | | | |        
| * | | | | | commit 6249e22b977aba289ca0939c561bc9d2299a6ee3
| | |_|_|_|/  Author: Baozeng Ding <sploving1@gmail.com>
| |/| | | |   Date:   Thu Jun 30 23:18:21 2011 +0800
| | | | | |   
| | | | | |       add distance_hammingword_modular and distance_manhattenword_modular example
| | | | | |   
| | | | | |   A	examples/undocumented/java_modular/distance_hammingword_modular.java
| | | | | |   A	examples/undocumented/java_modular/distance_manhattenword_modular.java
| | | | | |       
* | | | | | commit 964dcbd5cb56e515fe82b2a312964a12a07d2ede
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Thu Jun 30 22:13:30 2011 +0400
| | | | | | 
| | | | | |     Changed eigenpairs order in ClassicMDS with ARPACK
| | | | | | 
| | | | | | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | | | |       
* | | | | | commit 3d6a5b560fcc06432be49dfb077e8f05c53054b8
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Thu Jun 30 21:55:53 2011 +0400
| | | | | | 
| | | | | |     Added ARPACK support for ClassicMDS
| | | | | | 
| | | | | | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | | | |       
* | | | | | commit e097863d1a8bcfa0861529e017beed9af88dd642
|/ / / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | |   Date:   Thu Jun 30 21:55:31 2011 +0400
| | | | |   
| | | | |       Added wrapper for ARPACK
| | | | |   
| | | | |   A	src/libshogun/lib/arpack.cpp
| | | | |   A	src/libshogun/lib/arpack.h
| | | | |        
* | | | |   commit 715f2a29b79ca39351be7ea6239fef33a36e20a3
|\ \ \ \ \  Merge: 336e167 ded723b
| | |_|_|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |/| | |   Date:   Thu Jun 30 17:44:06 2011 +0400
| | | | |   
| | | | |       Merge branch 'master' of git://github.com/karlnapf/shogun
| | | | |      
| * | | | commit ded723b7717137ddbba624c5a931ad8c0fb02c73
| | |_|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/| |   Date:   Thu Jun 30 15:41:19 2011 +0200
| | | |   
| | | |       LibLinear now does now not SG_REF labels in appy anymore
| | | |       (in fashion with other machines)
| | | |   
| | | |   M	src/libshogun/evaluation/CrossValidation.cpp
| | | |   M	src/libshogun/machine/LinearMachine.cpp
| | | |     
* | | | commit 336e167dfc479d61e69273d988961f2017efad71
|/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | |   Date:   Thu Jun 30 17:19:49 2011 +0400
| | |   
| | |       Fix for auROC and auPRC
| | |   
| | |   M	src/libshogun/evaluation/PRCEvaluation.cpp
| | |   M	src/libshogun/evaluation/ROCEvaluation.cpp
| | |   M	src/libshogun/lib/Mathematics.h
| | |    
* | | commit 27b9479e2d35d47ad24badd3051a6fc20b609241
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Jun 30 14:12:18 2011 +0200
| | | 
| | |     added remove subset in obtain_from_char_features
| | | 
| | | M	src/libshogun/features/StringFeatures.h
| | |    
* | | commit d10eaf332799e24c9e45209ac224e520a52295b6
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/|   Date:   Thu Jun 30 14:11:32 2011 +0200
| |   
| |       added subset support for obtain_from_char fixing sergey's fixme
| |   
| |   M	src/libshogun/features/StringFeatures.h
| |   
* | commit 7c7e3de5661e591a6d26d0fbdbae47cbf9e3645a
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Jun 30 02:46:03 2011 +0400
| | 
| |     Fix for K-Isomap procedure
| | 
| | M	src/libshogun/preprocessor/Isomap.h
| |   
* | commit cc04bff4895f290acac3e492d925a8638e7425f6
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Jun 30 00:47:38 2011 +0400
| | 
| |     Added FIXME and fixed StringFeatures compile bug
| | 
| | M	src/libshogun/features/StringFeatures.h
| |     
* |   commit b803c053f1a39d74b18bf3c4b1b7c10827acb7ca
|\ \  Merge: e5b3696 d634cf8
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Wed Jun 29 12:36:09 2011 -0700
| |   
| |       Merge pull request #154 from karlnapf/master
| |       
| |       bug in DynArray
| |   
| * commit d634cf87fd7c8dc83a11ce54101df26252996d06
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 29 15:14:06 2011 +0200
| | 
| |     added subset support for get_transposed
| | 
| | M	src/libshogun/features/StringFeatures.h
| |   
| * commit 642679605a89e259e04ce14b4b958c475b4138b3
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 29 15:13:50 2011 +0200
| | 
| |     corrected a bug in get_transposed
| | 
| | M	src/libshogun/features/SimpleFeatures.h
| |   
| * commit e51d8ba960c6fbcc69c786e1004d1e8ebeb53204
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 29 15:04:57 2011 +0200
| | 
| |     applied forgotten index conversion
| | 
| | M	src/libshogun/features/SimpleFeatures.h
| |     
| *   commit 11dc433c774df05c7fbbb4940e29f0b109ed329c
| |\  Merge: 052e544 827f2b0
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 29 14:41:58 2011 +0200
| | | 
| | |     Merge remote-tracking branch 'upstream/master'
| | |    
| * | commit 052e544a4bca26e949b14c4089c62282b6efc9e2
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 29 14:41:36 2011 +0200
| | | 
| | |     added my name to copyright :)
| | | 
| | | M	src/libshogun/features/Features.cpp
| | | M	src/libshogun/features/Features.h
| | |    
| * | commit 6198fbe598d9a18be9c548d369468d8eb51feecd
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 29 12:07:19 2011 +0200
| | | 
| | |     -extended parameter range to have a larger search space
| | | 
| | | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| | |    
| * | commit a896e14e4fbf645e56c35be8cdac637506ce48a3
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 29 12:06:06 2011 +0200
| | | 
| | |     introduced SG_CALLOC
| | | 
| | | M	src/libshogun/lib/memory.cpp
| | | M	src/libshogun/lib/memory.h
| | |    
| * | commit b8d99d6247dc7b8113a81ac1d8aa871a6e490d44
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 29 12:05:51 2011 +0200
| | | 
| | |     -added usage of SG_CALLOC
| | |     -fixed a bug that caused memory error for the = operator if one array had a different size than the other
| | | 
| | | M	src/libshogun/base/DynArray.h
| | |      
* | |   commit e5b36960ff0e1454c8c86eb554c09f452b8962ba
|\ \ \  Merge: c47b8ec b2af56c
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Jun 29 12:26:57 2011 -0700
| | | | 
| | | |     Merge pull request #155 from sploving/master
| | | |     
| | | |     support SGVector for  UJMP
| | | |     
| * | | commit b2af56cb8a716de2699299af1312c2755a77c0a7
| | |/  Author: Baozeng Ding <sploving1@gmail.com>
| |/|   Date:   Wed Jun 29 21:56:14 2011 +0800
| | |   
| | |       support SGVector for UJMP
| | |   
| | |   M	src/java_modular/swig_typemaps.i
| | |    
* | | commit c47b8ec260b76d542470625969c34543cda4f19e
|/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |   Date:   Wed Jun 29 22:48:06 2011 +0400
| |   
| |       Fixed includes at Isomap.h
| |   
| |   M	src/libshogun/preprocessor/Isomap.h
| |     
* |   commit 827f2b02d0937b2ea58216032c315aed475ad15d
|\ \  Merge: b8eca36 2b2f0f6
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Wed Jun 29 02:36:04 2011 -0700
| |   
| |       Merge pull request #153 from karlnapf/master
| |       
| |       new subset implementation
| |   
| * commit 2b2f0f6c9df5dff2dd9ca8aaf8e5e38c1649daaa
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 29 10:43:41 2011 +0200
| | 
| |     added SG_REF for methods that return a CSGObject
| | 
| | M	src/libshogun/features/Subset.cpp
| | M	src/libshogun/machine/LinearMachine.cpp
| |   
| * commit 09168363c2b3dbad0d681097f363725d14f1a94f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 29 10:43:20 2011 +0200
| | 
| |     applied interface change in CCrossValidation
| | 
| | M	src/libshogun/modelselection/GridSearchModelSelection.cpp
| |   
| * commit f157ef63218cfd484ff7c00d7a1966df3bca9292
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 29 10:42:33 2011 +0200
| | 
| |     removed getter for machine and added getter for machine's parameters
| | 
| | M	src/libshogun/evaluation/CrossValidation.cpp
| | M	src/libshogun/evaluation/CrossValidation.h
| |   
| * commit 7af8b0039c2bd562095e44b05a587bef8d469c07
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 29 10:19:49 2011 +0200
| | 
| |     white space change
| | 
| | M	src/libshogun/features/SimpleFeatures.h
| |   
| * commit 4a92f3876fba901c84bf6809be87b7c019b795ea
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 29 10:19:41 2011 +0200
| | 
| |     usage of SG_REF SG_UNREAF instead of delete
| | 
| | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | M	src/libshogun/evaluation/CrossValidation.cpp
| | M	src/libshogun/features/Features.cpp
| | M	src/libshogun/features/Labels.cpp
| |   
| * commit d7ac3f9252d3b3fa1bfe794866394db25c739c23
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 29 10:03:29 2011 +0200
| | 
| |     use SG_UNREF instead of delete
| | 
| | M	src/libshogun/evaluation/CrossValidation.cpp
| |     
| *   commit e5345dd826cba35506bf1336b8bf0be165c2cb73
| |\  Merge: 46901ee b8eca36
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/|   Date:   Wed Jun 29 10:01:29 2011 +0200
| |   
| |       Merge remote-tracking branch 'upstream/master'
| |     
* |   commit b8eca3647d5242e52ce14f7d38f7f4c9f340dc1a
|\ \  Merge: 427a6c6 398048d
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Jun 29 03:57:01 2011 +0400
| | | 
| | |     Merge branch 'master' of ssh://shogun-toolbox.org/shogun
| | |     
| | |     Conflicts:
| | |     	src/modular/Preprocessor.i
| | |    
| * | commit 398048d2983452c57f9f532cb3bc4514fb467142
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Jun 29 03:51:58 2011 +0400
| | | 
| | |     Various fixes and changes for Isomap
| | | 
| | | A	src/libshogun/preprocessor/ClassicIsomap.h
| | | M	src/libshogun/preprocessor/ClassicMDS.h
| | | D	src/libshogun/preprocessor/Isomap.cpp
| | | M	src/libshogun/preprocessor/Isomap.h
| | | D	src/libshogun/preprocessor/LandmarkIsomap.cpp
| | | M	src/libshogun/preprocessor/LandmarkIsomap.h
| | | M	src/libshogun/preprocessor/LandmarkMDS.cpp
| | | M	src/libshogun/preprocessor/LandmarkMDS.h
| | | M	src/libshogun/preprocessor/Preprocessor.h
| | | M	src/modular/Preprocessor.i
| | | M	src/modular/Preprocessor_includes.i
| | |    
* | | commit 427a6c66fab0fb455e21d2b9a8253612ea3420ba
|/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |   Date:   Wed Jun 29 03:51:58 2011 +0400
| |   
| |       Various fixes and changes for Isomap
| |   
| |   A	src/libshogun/preprocessor/ClassicIsomap.h
| |   M	src/libshogun/preprocessor/ClassicMDS.h
| |   D	src/libshogun/preprocessor/Isomap.cpp
| |   M	src/libshogun/preprocessor/Isomap.h
| |   D	src/libshogun/preprocessor/LandmarkIsomap.cpp
| |   M	src/libshogun/preprocessor/LandmarkIsomap.h
| |   M	src/libshogun/preprocessor/LandmarkMDS.cpp
| |   M	src/libshogun/preprocessor/LandmarkMDS.h
| |   M	src/libshogun/preprocessor/Preprocessor.h
| |   M	src/modular/Preprocessor.i
| |   M	src/modular/Preprocessor_includes.i
| |     
* |   commit 8fc6d4a201456af87e4f3879862da878cd5db156
|\ \  Merge: c9de9e3 d561923
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jun 28 13:59:19 2011 -0700
| | | 
| | |     Merge pull request #151 from sploving/master
| | |     
| | |     add ujmp types other than double/float
| | |    
| * | commit d561923de43d828664fc07652ed773f62bdbf909
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Tue Jun 28 20:29:55 2011 +0800
| | | 
| | |     add package import
| | | 
| | | M	src/java_modular/swig_typemaps.i
| | |    
| * | commit 9baa20324a2a458368b200568d8025f1424febc2
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Tue Jun 28 20:25:37 2011 +0800
| | | 
| | |     add package import
| | | 
| | | M	src/java_modular/swig_typemaps.i
| | |    
| * | commit 887d9eeafc8cfdf453f4ea6a29b3f26c23033d90
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Tue Jun 28 20:01:04 2011 +0800
| | | 
| | |     support ujmp types other than float/double
| | | 
| | | M	src/java_modular/swig_typemaps.i
| | |    
| | * commit 46901eecca7957558de45f54bb9c3a6f056788f6
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 28 21:48:35 2011 +0200
| | | 
| | |     fixed segfault
| | | 
| | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | |    
| | * commit 1e9f7760916590f1f1b1ee844a30e197a8d4091a
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 28 21:47:27 2011 +0200
| | | 
| | |     fixed segfault
| | | 
| | | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | |    
| | * commit 674154d5782482a0b8a84ec36591483fc18498aa
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 28 21:43:02 2011 +0200
| | | 
| | |     use wrapper method to access subset_idx_conversion to avoid NULL-Pointer segfaults
| | | 
| | | M	src/libshogun/features/Labels.cpp
| | |    
| | * commit 45a2ba98e7b0f4952f9b3160d560242cb4cec0d8
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 28 21:27:20 2011 +0200
| | | 
| | |     fixed renamings of subset examples
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | |      
| | *   commit 900696b2fe4ab90cc21b72cf58c056ab3e6e38dc
| | |\  Merge: b33e353 a829115
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jun 28 21:12:05 2011 +0200
| | | | 
| | | |     Merge branch 'master' into subsetfix
| | | |       
| | | *   commit a8291152389dcaf6e310c9a67720f3cb70f36f3f
| | | |\  Merge: 798234e 297c61b
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jun 28 19:42:02 2011 +0200
| | | | | 
| | | | |     Merge branch 'subsetfix'
| | | | |        
| | | * |   commit 798234e6d67c5647f6a8f2178136f58881c14f9f
| | | |\ \  Merge: ae62c82 c9de9e3
| |_|_|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| | | |   Date:   Tue Jun 28 19:41:56 2011 +0200
| | | | |   
| | | | |       Merge remote-tracking branch 'upstream/master'
| | | | |      
| | * | | commit b33e353dc5d053f475ef31eb7b81fd92b440cf0a
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jun 28 21:11:30 2011 +0200
| | | | | 
| | | | |     comment change
| | | | | 
| | | | | M	src/libshogun/features/StringFeatures.h
| | | | |      
| | * | | commit 5d584bf9654335994be3ab7bd7a5c1b919db9305
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jun 28 21:10:34 2011 +0200
| | | | | 
| | | | |     applied new subset design
| | | | | 
| | | | | M	examples/undocumented/libshogun/features_subset_simple_features.cpp
| | | | |      
| | * | | commit 25cb76047f75364cfff5366fe23bd8fb9a4af925
| | | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |/|   Date:   Tue Jun 28 21:09:44 2011 +0200
| | | |   
| | | |       Revert "applied subset changes"
| | | |       
| | | |       This reverts commit 38bca7f5b9f5c022818ad67196f6d3fd1dedc915.
| | | |   
| | | |   M	examples/undocumented/libshogun/features_subset_simple_features.cpp
| | | |   D	examples/undocumented/libshogun/features_subset_string_features.cpp
| | | |     
| | * | commit 297c61b245b741083cf201c4107be6c0539dfa61
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jun 28 19:41:19 2011 +0200
| | | | 
| | | |     applied subset changes
| | | | 
| | | | M	src/libshogun/evaluation/CrossValidation.cpp
| | | |     
| | * | commit e285f57b3e629cb50533cd2f1eb2fd1e9fe14a11
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jun 28 19:41:06 2011 +0200
| | | | 
| | | |     applied subset changes
| | | | 
| | | | M	examples/undocumented/libshogun/features_subset_labels.cpp
| | | |     
| | * | commit 38bca7f5b9f5c022818ad67196f6d3fd1dedc915
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jun 28 19:40:58 2011 +0200
| | | | 
| | | |     applied subset changes
| | | | 
| | | | M	examples/undocumented/libshogun/features_subset_simple_features.cpp
| | | | A	examples/undocumented/libshogun/features_subset_string_features.cpp
| | | |     
| | * | commit a26317632b90161c31d26c1add2179f187cb1e21
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jun 28 19:37:00 2011 +0200
| | | | 
| | | |     -applied subset design changes
| | | | 
| | | | M	src/libshogun/features/StringFeatures.h
| | | |     
| | * | commit 7cc44bca9fa0637aa3bbc36593f6972cae326f0b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jun 28 19:36:15 2011 +0200
| | | | 
| | | |     -subset check is now done via pointer, not via method
| | | |     -removed variable for number of subset vectors, method is used instead
| | | |     -removed setter/remover for subset
| | | | 
| | | | M	src/libshogun/features/SimpleFeatures.h
| | | |     
| | * | commit 3af162815b4bcba5adce50de2886e969a9283347
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jun 28 19:31:48 2011 +0200
| | | | 
| | | |     -removed additional variables for number of labels and use method instead
| | | |     -added subset implementations for certain methods
| | | |     -subset check is now don via pointer, not via method
| | | |     -added many comments whether subset is supported
| | | |     -removed old wrapper methods and stick to new subset design
| | | | 
| | | | M	src/libshogun/features/Labels.cpp
| | | | M	src/libshogun/features/Labels.h
| | | |     
| | * | commit 07a17e08c43f45817e8c7fbc405bf6afceb6991a
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jun 28 19:29:32 2011 +0200
| | | | 
| | | |     -removed wrapper methods and added setter and remover for subset
| | | |     -added index conversion method
| | | |     -implemented a post method that is called after a subset change
| | | |     -added some comments
| | | | 
| | | | M	src/libshogun/features/Features.cpp
| | | | M	src/libshogun/features/Features.h
| | | |     
| | * | commit a5734de30ad5e91d63a6757ada91707e44079041
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jun 28 19:28:14 2011 +0200
| | | | 
| | | |     -added duplicate method
| | | |     -remoed setter and getter for index vector
| | | |     -added init method to register params
| | | | 
| | | | M	src/libshogun/features/Subset.cpp
| | | |     
| | * | commit ae5a5cd30984cae55f7b3e22ee2541a6838524d1
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jun 28 19:27:30 2011 +0200
| | | | 
| | | |     -made index vector const
| | | |     -renamed index vector
| | | |     -added method to get size of subsett
| | | |     -removed getter for index vector
| | | |     -removed remove_subset method
| | | | 
| | | | M	src/libshogun/features/Subset.h
| | | |       
| | * |   commit 3fb107026aa78538876295dfd3ee096cae1e4e0f
| | |\ \  Merge: bbe82c8 c9de9e3
| |_|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| | |   Date:   Tue Jun 28 19:13:25 2011 +0200
| | | |   
| | | |       Merge remote-tracking branch 'upstream/master' into subsetfix
| | | |     
* | | | commit c9de9e3879cd79d1cdfa9f2d93b878c21284b747
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Tue Jun 28 16:14:25 2011 +0400
| | | | 
| | | |     Fix for dimensionality check at ClassicMDS
| | | | 
| | | | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | |       
| | * |   commit bbe82c846080683343f3f5baa39a7f9c2a8673a7
| | |\ \  Merge: f7727ac 70286b3
| |_|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| | |   Date:   Tue Jun 28 13:11:29 2011 +0200
| | | |   
| | | |       Merge remote-tracking branch 'upstream/master' into subsetfix
| | | |       
* | | |   commit 70286b37aa0f39e9904166639ae282818078a50c
|\ \ \ \  Merge: 96d091c 219c545
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Tue Jun 28 03:25:26 2011 -0700
| | | |   
| | | |       Merge pull request #150 from sploving/master
| | | |       
| | | |       support ujmp dense matrix
| | | |     
| * | | commit 219c54598fabc789444a5c8feb78d33f7f6670c6
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Tue Jun 28 17:54:46 2011 +0800
| | | | 
| | | |     support ujmp dense matrix
| | | | 
| | | | M	src/java_modular/swig_typemaps.i
| | | |     
* | | | commit 96d091cecf2a3ca25c0d64011c0371bb8f6d9c93
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Tue Jun 28 12:24:18 2011 +0200
| | |   
| | |       fix compile error w/ java_modular
| | |   
| | |   M	data
| | |   M	src/modular/Distance.i
| | |   M	src/modular/Features.i
| | |   M	src/modular/Kernel.i
| | |   M	src/modular/Preprocessor.i
| | |      
* | |   commit a42094ce54bfc0150c3f6f1737f1cbd623e27306
|\ \ \  Merge: 1114044 bd1e65e
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jun 27 13:14:12 2011 -0700
| | | | 
| | | |     Merge pull request #139 from karlnapf/master
| | | |     
| | | |     first working version of subset support for SimpleFeatures
| | | |     
* | | | commit 1114044db179ad7f5cc10e0439999c10818efc3e
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Tue Jun 28 00:10:10 2011 +0400
| | | | 
| | | |     Restore LandmarkIsomap with not implemented tags
| | | | 
| | | | A	src/libshogun/preprocessor/LandmarkIsomap.cpp
| | | | A	src/libshogun/preprocessor/LandmarkIsomap.h
| | | |     
* | | | commit 596755ef69525c19bbb6362584be53cb3b9f831d
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Tue Jun 28 00:07:30 2011 +0400
| | | | 
| | | |     Temporarly remove LandmarkIsomap
| | | | 
| | | | D	src/libshogun/preprocessor/LandmarkIsomap.cpp
| | | | D	src/libshogun/preprocessor/LandmarkIsomap.h
| | | |       
| | * |   commit f7727ac01ecdf50b1c2d3e7fd40a5a99e4a438f5
| | |\ \  Merge: 20ee95e ae62c82
| | | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Mon Jun 27 10:08:48 2011 +0200
| | | |   
| | | |       Merge branch 'master' into subsetfix
| | | |       
| | | *   commit ae62c82cd6b320ef5fa5a5f9b2b497e398b97b34
| | | |\  Merge: bd1e65e 59ffa87
| | |/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/| /   Date:   Mon Jun 27 09:35:06 2011 +0200
| |_|/    
|/| |         Merge remote-tracking branch 'upstream/master'
| | |    
* | | commit 59ffa87b8ce893616481fec49f4144200ff56687
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Jun 26 22:28:41 2011 +0200
| | | 
| | |     add arpack configure detection
| | | 
| | | M	src/configure
| | |      
* | |   commit 1e8832709dbbe3a447a2367a4f43c4eca317c1e6
|\ \ \  Merge: 03cbe1e e661720
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sun Jun 26 11:44:37 2011 -0700
| | | | 
| | | |     Merge pull request #148 from frx/streaming
| | | |     
| | | |     Implemented a basic StreamingSparseFeatures. Added read functions to StreamingFile.
| | | |     
| * | | commit e661720eadbfed396e4ea454787950d0525493a8
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Sun Jun 26 20:36:51 2011 +0530
| | | | 
| | | |     Added doc to StreamingStringFeatures. Minor modification to doc in StreamingSparseFeatures.
| | | | 
| | | | M	src/libshogun/features/StreamingSparseFeatures.h
| | | | M	src/libshogun/features/StreamingStringFeatures.h
| | | |     
| * | | commit c90f350209556286ed346481b7bd276ed82a2f58
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Sun Jun 26 20:18:37 2011 +0530
| | | | 
| | | |     Implemented a basic StreamingSparseFeatures. Added read functions to StreamingFile.
| | | | 
| | | | A	src/libshogun/features/StreamingSparseFeatures.h
| | | | M	src/libshogun/lib/StreamingFile.cpp
| | | | M	src/libshogun/lib/StreamingFile.h
| | | |     
* | | | commit 03cbe1e1dc05d0e2f006fb38600fb569edd1b329
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Jun 26 22:24:11 2011 +0400
| | | | 
| | | |     Added check for connectiveness at LandmarkIsomap
| | | | 
| | | | M	src/libshogun/preprocessor/LandmarkIsomap.cpp
| | | |     
* | | | commit 9a53df8f759fab607be751f68bff528c67c13744
|/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | |   Date:   Sun Jun 26 20:49:16 2011 +0400
| | |   
| | |       Fixed LandmarkMDS
| | |   
| | |   M	src/libshogun/preprocessor/LandmarkMDS.cpp
| | |    
* | | commit e7307d545e022bfb4fab21b07247f0138a6d6fdf
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jun 26 18:50:24 2011 +0400
| | | 
| | |     Fixes for geodesic distance in Isomaps
| | | 
| | | M	src/libshogun/preprocessor/Isomap.cpp
| | | M	src/libshogun/preprocessor/Isomap.h
| | | M	src/libshogun/preprocessor/LandmarkIsomap.cpp
| | |    
* | | commit 53b127da20c8b3563a1fe4dac0352d537e7d0e76
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jun 26 17:30:52 2011 +0400
| | | 
| | |     Fixes for LandmarkIsomap
| | | 
| | | M	src/libshogun/preprocessor/LandmarkIsomap.cpp
| | | M	src/libshogun/preprocessor/LandmarkIsomap.h
| | |    
* | | commit ac7e2e7af8ba5962b3e95f218001d696e917bfdb
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jun 26 17:29:55 2011 +0400
| | | 
| | |     Fixes for LandmarkMDS
| | | 
| | | M	src/libshogun/preprocessor/LandmarkMDS.cpp
| | |    
* | | commit d041299b357ded493cfa8d63e7b737c32cf72618
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jun 26 17:29:36 2011 +0400
| | | 
| | |     Fixes for ClassicMDS
| | | 
| | | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | M	src/libshogun/preprocessor/ClassicMDS.h
| | |      
* | |   commit dc2a8f8e7ab9be60d3cd429cfc1387591f378915
|\ \ \  Merge: 08d3290 65ac9bf
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Jun 26 01:25:31 2011 +0400
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |     
* | | | commit 08d3290842d64dec8d39e9d8884d0b0db6078bf7
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Jun 26 01:22:15 2011 +0400
| | | | 
| | | |     Added getter for eigenvalues of ClassicMDS
| | | | 
| | | | M	src/libshogun/preprocessor/ClassicMDS.h
| | | |     
| | * | commit bd1e65e90890f441512a09f568dcdf7d1d0b390e
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sat Jun 25 22:35:29 2011 +0200
| | | | 
| | | |     removed because the computer_feature_vector method will be overwritten
| | | | 
| | | | M	src/libshogun/features/SimpleFeatures.h
| | | |       
| | | *   commit 20ee95e33720d0003c8274f4ab02d9590247967a
| | | |\  Merge: 67b1b47 e37803f
| | | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |/|   Date:   Sat Jun 25 14:40:57 2011 +0200
| | | |   
| | | |       Merge branch 'master' into firstGridSearch
| | | |       
| | * |   commit e37803fc9ae27724697425e9f9ed84010b218356
| | |\ \  Merge: 281f741 65ac9bf
| | |/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/| |   Date:   Sat Jun 25 14:40:29 2011 +0200
| | | |   
| | | |       Merge remote-tracking branch 'upstream/master'
| | | |       
| | | |       Conflicts:
| | | |       	src/libshogun/features/SimpleFeatures.h
| | | |     
| * | | commit 65ac9bf2e9950d0b0f5bbcd9519f4650a2d3ec43
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Jun 24 23:57:45 2011 +0200
| | | | 
| | | |     rename dot features' get_feature_vector/matrix functions to avoid naming clash
| | | | 
| | | | M	src/java_modular/swig_typemaps.i
| | | | M	src/libshogun/classifier/GaussianNaiveBayes.cpp
| | | | M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| | | | M	src/libshogun/classifier/svm/MultiClassSVM.h
| | | | M	src/libshogun/classifier/svm/SGDQN.cpp
| | | | M	src/libshogun/clustering/GMM.cpp
| | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | M	src/libshogun/features/DotFeatures.cpp
| | | | M	src/libshogun/features/DotFeatures.h
| | | | M	src/libshogun/features/Labels.h
| | | | M	src/libshogun/features/SimpleFeatures.h
| | | | M	src/libshogunui/SGInterface.cpp
| | | | M	src/modular/Features.i
| | | |       
| * | |   commit 267bed1465a7f03494df900db386b43d3d348867
| |\ \ \  Merge: 8ace2c2 41415e8
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Fri Jun 24 17:20:04 2011 +0200
| | | | | 
| | | | |     Merge branch 'streaming' of git://github.com/frx/shogun
| | | | |      
| | * | | commit 41415e8f4e25e2d675ce3232a68f838db348da8c
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Fri Jun 24 17:10:56 2011 +0530
| | | | | 
| | | | |     StreamingStringFeatures works minimally; some changes to parser to handle reading problems with the 1st example seen.
| | | | |     StreamingFile handles string vectors better.
| | | | | 
| | | | | A	src/libshogun/features/StreamingStringFeatures.h
| | | | | M	src/libshogun/lib/InputParser.h
| | | | | M	src/libshogun/lib/StreamingFile.cpp
| | | | |      
| | * | | commit 21db1f8a944ae56a5529f7f39daf7bfd34d107ff
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Fri Jun 24 05:03:14 2011 +0530
| | | | | 
| | | | |     Made basic read functions for StreamingStringFeatures in StreamingFile, get_*_string*
| | | | | 
| | | | | M	src/libshogun/lib/StreamingFile.cpp
| | | | | M	src/libshogun/lib/StreamingFile.h
| | | | |        
| * | | |   commit 8ace2c28ef940d22dda59910b132ff4247bcd756
| |\ \ \ \  Merge: 8ca4620 7e02ed7
| | |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | |   Date:   Fri Jun 24 17:12:52 2011 +0200
| | | | |   
| | | | |       Merge branch 'gmm' of git://github.com/alesis/shogun
| | | | |      
| | * | | commit 7e02ed7cc39af93da7f49a7290ad38832a2cd003
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Fri Jun 24 15:15:51 2011 +0100
| | | | | 
| | | | |     SG* fixes
| | | | | 
| | | | | M	src/libshogun/clustering/GMM.cpp
| | | | | M	src/modular/Distribution.i
| | | | |      
| | * | | commit 9991c2a6135f7ee6eb20f22bc143b9bb5c4ed608
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Thu Jun 23 02:49:28 2011 +0100
| | | | | 
| | | | |     Bug fixes and temporary solution for SG* python-modular problem
| | | | | 
| | | | | M	src/libshogun/clustering/GMM.cpp
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | |      
| | * | | commit 2bc58915e1aa2239f12afa169468aca817ca529b
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Wed Jun 22 21:30:11 2011 +0100
| | | | | 
| | | | |     Added GMM and Gaussian to modular. Switched to using SGVector and SGMatrix
| | | | | 
| | | | | M	src/libshogun/clustering/GMM.cpp
| | | | | M	src/libshogun/clustering/GMM.h
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | | M	src/modular/Distribution.i
| | | | | M	src/modular/Distribution_includes.i
| | | | |      
| | * | | commit ccfee92ca8da44de68af866c00681f1b4cf49a9e
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Wed Jun 22 08:24:07 2011 +0100
| | | | | 
| | | | |     modular update for Gaussian and GMM
| | | | | 
| | | | | M	src/modular/Distribution.i
| | | | |      
| | * | | commit 6aae22eabfc8b1178a02742593d8a9da65ea78b9
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Wed Jun 22 04:30:36 2011 +0100
| | | | | 
| | | | |     Old changes to Gaussian and GMM to allow sampling
| | | | | 
| | | | | M	src/libshogun/clustering/GMM.cpp
| | | | | M	src/libshogun/clustering/GMM.h
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | |      
| | * | | commit b932ea6918ec39c7d761ba9b7f9b4245df848b24
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Mon Jun 13 00:29:26 2011 +0300
| | | | | 
| | | | |     Rewrote the GMM file to use covariance types and decomposition, optimized start
| | | | | 
| | | | | M	src/libshogun/clustering/GMM.cpp
| | | | | M	src/libshogun/clustering/GMM.h
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | |      
| | * | | commit c7acc0825fd335cc88a7e0c02dd88d574ef7f4dc
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Thu Jun 2 21:19:53 2011 +0100
| | | | | 
| | | | |     Fixed bugs in Gaussian.cpp
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | |      
| | * | | commit fdcf6109a2342d4376e987849bdccf08a89320cf
| |/ / /  Author: Alesis Novik <alesisnov@gmail.com>
|/| | |   Date:   Thu Jun 2 05:08:25 2011 +0100
| | | |   
| | | |       Rewritten Gaussian class to work with different covariance types in log domain.
| | | |   
| | | |   M	src/libshogun/distributions/Gaussian.cpp
| | | |   M	src/libshogun/distributions/Gaussian.h
| | | |     
| * | | commit 8ca46207d994fbebcab2817c2d8ca7bf1680bf81
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Fri Jun 24 16:12:19 2011 +0200
| | |   
| | |       fix the serialization examples and Labels' serialization
| | |   
| | |   M	examples/undocumented/python_modular/serialization_complex_example.py
| | |   M	src/libshogun/features/Labels.cpp
| | |   M	src/libshogun/features/Labels.h
| | |   M	src/libshogun/preprocessor/Preprocessor.h
| | |      
* | |   commit ef42f4996138e5663324894f0a1037d7eaca64b3
|\ \ \  Merge: e4b52f0 88edc41
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Jun 24 14:45:53 2011 +0200
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |     
| * | | commit 88edc41c8aa57f2d143532a4e4d058ffd8314850
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Fri Jun 24 16:11:41 2011 +0400
| | | | 
| | | |     Added LandmarkIsomap and fixed Isomap and LandmarkMDS
| | | | 
| | | | M	src/libshogun/preprocessor/Isomap.h
| | | | A	src/libshogun/preprocessor/LandmarkIsomap.cpp
| | | | A	src/libshogun/preprocessor/LandmarkIsomap.h
| | | | M	src/libshogun/preprocessor/LandmarkMDS.h
| | | | M	src/libshogun/preprocessor/Preprocessor.h
| | | | M	src/modular/Preprocessor.i
| | | | M	src/modular/Preprocessor_includes.i
| | | |     
| * | | commit 1b78b3ae1ce48c6fa3c85c531c401f466ab8dee3
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Fri Jun 24 16:10:30 2011 +0400
| | | | 
| | | |     Fixes for GaussianNaiveBayes
| | | | 
| | | | M	src/libshogun/classifier/GaussianNaiveBayes.cpp
| | | | M	src/libshogun/classifier/GaussianNaiveBayes.h
| | | |     
| * | | commit dd0ff30d0cb8d64c6dd95d4f83c05319247179a7
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Fri Jun 24 15:13:49 2011 +0400
| | | | 
| | | |     Removed ignored = operator at RandomFourierGaussPreproc
| | | | 
| | | | M	src/libshogun/preprocessor/RandomFourierGaussPreproc.cpp
| | | | M	src/libshogun/preprocessor/RandomFourierGaussPreproc.h
| | | |     
* | | | commit e4b52f0fa12bc151d391f93e9b924be2c3c69a11
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Jun 24 14:45:34 2011 +0200
| | | | 
| | | |     include preprocs in all modular interfaces
| | | | 
| | | | M	src/modular/Classifier.i
| | | | M	src/modular/Clustering.i
| | | | M	src/modular/Distance.i
| | | | M	src/modular/Distribution.i
| | | | M	src/modular/Evaluation.i
| | | | M	src/modular/Kernel.i
| | | | M	src/modular/Regression.i
| | | | M	src/modular/Structure.i
| | | |     
* | | | commit 5a32d4dea27b307aa149470c0ee4d5ac50c504cb
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Fri Jun 24 14:40:36 2011 +0200
| | |   
| | |       add missing cases to kernels
| | |   
| | |   M	src/libshogun/kernel/Kernel.cpp
| | |      
* | |   commit 9e02b38cace7e4e76901b2b9395434ee76b596b6
|\ \ \  Merge: 9d78a61 8de57a2
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Jun 24 12:52:20 2011 +0200
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |     
| * | | commit 8de57a2b19969811df78ed7fada9b7908cb3f715
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Fri Jun 24 13:59:32 2011 +0400
| | | | 
| | | |     Fixes for python testsuite
| | | | 
| | | | M	testsuite/generator/featop.py
| | | | M	testsuite/python_modular/classifier.py
| | | | M	testsuite/python_modular/kernel.py
| | | | D	testsuite/python_modular/preproc.py
| | | | A	testsuite/python_modular/preprocessor.py
| | | | M	testsuite/python_modular/regression.py
| | | | M	testsuite/python_modular/test_one.py
| | | | M	testsuite/python_modular/util.py
| | | |     
* | | | commit 9d78a616748684703efb6803679c3cd931253180
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Fri Jun 24 12:51:53 2011 +0200
| | |   
| | |       T** transition for DotFeatures' get_feature_vector and matrix
| | |   
| | |   M	src/libshogun/classifier/GaussianNaiveBayes.cpp
| | |   M	src/libshogun/classifier/svm/SGDQN.cpp
| | |   M	src/libshogun/clustering/GMM.cpp
| | |   M	src/libshogun/distributions/Gaussian.cpp
| | |   M	src/libshogun/features/DotFeatures.cpp
| | |   M	src/libshogun/features/DotFeatures.h
| | |   M	src/libshogun/features/SimpleFeatures.h
| | |   M	src/libshogunui/SGInterface.cpp
| | |    
* | | commit 16c3af6ff7d46104d4a50f61e3d09638d67fbb2e
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jun 24 02:45:35 2011 +0200
| | | 
| | |     import preprocessors in features too
| | | 
| | | M	src/modular/Features.i
| | |      
* | |   commit ec1eb8e0f94f7d5619031d3eede0db38067e9a40
|\ \ \  Merge: aaabffb 8dd49db
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Jun 24 00:41:58 2011 +0200
| | | | 
| | | |     Merge branch 'streaming' of git://github.com/frx/shogun
| | | |     
| * | | commit 8dd49dbfb325e7c44bca082ff2dce07c4437fc25
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Fri Jun 24 04:08:34 2011 +0530
| | | | 
| | | |     Added the set_*_reader functions calls to StreamingFeatures as one function - set_read_functions. Call this from derived class.
| | | | 
| | | | M	src/libshogun/features/StreamingFeatures.h
| | | | M	src/libshogun/features/StreamingSimpleFeatures.h
| | | |     
| * | | commit 591933d0bda104d4712a79de36291e9f515fa408
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Fri Jun 24 03:34:03 2011 +0530
| | | | 
| | | |     Moved set_vector_reader_* functions to StreamingFeatures.
| | | | 
| | | | M	src/libshogun/features/StreamingFeatures.h
| | | | M	src/libshogun/features/StreamingSimpleFeatures.h
| | | |     
| * | | commit f692e6f899527d7d420d0943b2baaa764c66aab8
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Fri Jun 24 03:00:01 2011 +0530
| | | | 
| | | |     Corrected some constructor calls in StDotFeatures and StFeatures.
| | | | 
| | | | M	src/libshogun/features/StreamingDotFeatures.h
| | | | M	src/libshogun/features/StreamingFeatures.h
| | | |     
| * | | commit 35ea40c4522e350da07e27bf77c33b2fd2d77855
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Fri Jun 24 02:58:18 2011 +0530
| | | | 
| | | |     Added base class constructor calls to StreamingSimpleFeatures and StreamingDotFeatures.. Made overloaded functions virtual.
| | | | 
| | | | M	src/libshogun/features/StreamingDotFeatures.h
| | | | M	src/libshogun/features/StreamingSimpleFeatures.h
| | | |     
| * | | commit 9e700d83e7280a96c601585e752fd9dab6a1d65d
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Thu Jun 23 21:26:42 2011 +0530
| | | | 
| | | |     Made parser and StreamingFeatures use function pointers for specifying functions to use while reading and parsing input.
| | | | 
| | | | M	src/libshogun/features/FeatureTypes.h
| | | | M	src/libshogun/features/Features.cpp
| | | | M	src/libshogun/features/StreamingFeatures.h
| | | | A	src/libshogun/features/StreamingSimpleFeatures.h
| | | | M	src/libshogun/lib/AsciiFile.cpp
| | | | M	src/libshogun/lib/InputParser.h
| | | |       
* | | |   commit aaabffb4abc494999429df03a24eca8bb36abefd
|\ \ \ \  Merge: ca09c91 1d146ef
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Thu Jun 23 23:11:20 2011 +0200
| | | |   
| | | |       Merge branch 'master' of git://github.com/sploving/shogun
| | | |     
| * | | commit 1d146ef7f6f4c2364a8e9a536be23d9fd78793bb
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Thu Jun 23 19:21:47 2011 +0800
| | | | 
| | | |     add load_dna method in Load class, splite SGStringList<char> typemap out of CStringFeatures as their jtype, jstype typemap is different, add distance_canberraword_modular.java example
| | | | 
| | | | M	examples/undocumented/java_modular/Load.java
| | | | A	examples/undocumented/java_modular/distance_canberraword_modular.java
| | | | M	src/java_modular/swig_typemaps.i
| | | |     
* | | | commit ca09c91c9547b7695921a41c0362e12879993f7d
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Thu Jun 23 23:31:44 2011 +0400
| | | | 
| | | |     Fixed LinearHMM
| | | | 
| | | | M	src/libshogun/classifier/PluginEstimate.h
| | | | M	src/libshogun/distributions/LinearHMM.cpp
| | | | M	src/libshogun/distributions/LinearHMM.h
| | | |       
* | | |   commit 40986cc4ebb95658fd9480b0442c09e90c20d4bb
|\ \ \ \  Merge: d7c71dd cf70c01
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Thu Jun 23 22:44:36 2011 +0400
| | | | | 
| | | | |     Merge branch 'master' of https://github.com/shogun-toolbox/shogun
| | | | |        
| * | | |   commit cf70c01790c8e38a8faf672f144a3c4dd92e4318
| |\ \ \ \  Merge: bb3f01d 601b796
| | |/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | |   Date:   Thu Jun 23 22:42:52 2011 +0400
| | | | |   
| | | | |       Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | | |      
| * | | | commit bb3f01da3ed18999ae8d0eb1473c5606628adcfa
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Thu Jun 23 22:42:07 2011 +0400
| | | | | 
| | | | |     Small fixes for SimpleFeatures
| | | | | 
| | | | | M	src/libshogun/features/SimpleFeatures.h
| | | | |      
* | | | | commit d7c71dd639a67a89bb7837c98945f091dbdb0c5c
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Thu Jun 23 22:38:38 2011 +0400
| | | | | 
| | | | |     Added example for LandmarkMDS
| | | | | 
| | | | | A	examples/undocumented/python_modular/preprocessor_landmarkmds_modular.py
| | | | |      
* | | | | commit 8ec326e6e00c109dc4e2fab7a43202fc20296341
| |/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|/| | |   Date:   Thu Jun 23 22:33:05 2011 +0400
| | | |   
| | | |       Introducing LandmarkMDS
| | | |   
| | | |   M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | |   M	src/libshogun/preprocessor/ClassicMDS.h
| | | |   A	src/libshogun/preprocessor/LandmarkMDS.cpp
| | | |   A	src/libshogun/preprocessor/LandmarkMDS.h
| | | |   M	src/modular/Preprocessor.i
| | | |   M	src/modular/Preprocessor_includes.i
| | | |     
* | | | commit 601b796b16b759c1019c0dbbf3540033076a0909
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Thu Jun 23 00:29:35 2011 +0200
| | |   
| | |       introduce copy() to copy object for numpy arrays - various fixes for
| | |       sparse features related typemap
| | |   
| | |   M	src/libshogun/features/SparseFeatures.h
| | |   M	src/libshogun/lib/DataType.h
| | |   M	src/libshogunui/SGInterface.cpp
| | |   M	src/modular/SGBase.i
| | |   M	src/python_modular/swig_typemaps.i
| | |    
* | | commit 1c13dc48647c921c1dea8497ce66bb44ed0ab9b8
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu Jun 23 01:54:19 2011 +0400
| | | 
| | |     ST* transition for PPWM
| | | 
| | | M	examples/undocumented/python_modular/distribution_ppwm_modular.py
| | | M	src/libshogun/distributions/PositionalPWM.h
| | |    
* | | commit b38b9079d5babe46ba6cd21649bbd0167956d7e9
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu Jun 23 01:29:52 2011 +0400
| | | 
| | |     ST* transition for Distribution base class and Histogram
| | | 
| | | M	src/libshogun/distributions/Distribution.cpp
| | | M	src/libshogun/distributions/Distribution.h
| | | M	src/libshogun/distributions/Histogram.cpp
| | | M	src/libshogun/distributions/Histogram.h
| | |    
* | | commit 5367d36e8abebcb503b099a79d0988e898d5920b
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Wed Jun 22 04:20:04 2011 +0530
| | | 
| | |     Changed return type of get_next_example to bool in StreamingFeatures.
| | | 
| | | M	src/libshogun/features/StreamingFeatures.h
| | |    
* | | commit d75d754738ea57d4f354fe09c0523f973a5db55a
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Wed Jun 22 21:12:25 2011 +0800
| | | 
| | |     change check.sh to accept an optional argument (.java file to check)
| | | 
| | | M	examples/undocumented/java_modular/check.sh
| | |    
| | * commit 67b1b47c2cd653e2e1e099430d369c41b9368ba4
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 22 16:57:28 2011 +0200
| | | 
| | |     added second parameter to search for
| | | 
| | | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| | |    
| | * commit 0eab164ad39e9162a1b65ff2a23aec4586aca5ae
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 22 16:56:59 2011 +0200
| | | 
| | |     fixed memory leak
| | | 
| | | M	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | |    
| | * commit a72988ca26b3be63a97e82de1fe7e9cbfd87f54d
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 22 16:04:26 2011 +0200
| | | 
| | |     -param tree now is automatically destroyed
| | |     -more work towards working example
| | | 
| | | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| | |    
| | * commit 721e23d4b76fa6c7ba53cd0ca4450350166e5c14
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 22 16:03:18 2011 +0200
| | | 
| | |     removed the destroy_tree variable and method.
| | |     root nodes now automatically destroy their tree upon deletion
| | | 
| | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | |    
| | * commit 05b78f705c0f2c8f0dd8f383b10536a7814e2e5f
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 22 15:35:54 2011 +0200
| | | 
| | |     replaced SG_UNREF by delete to solve mem error
| | | 
| | | M	src/libshogun/evaluation/CrossValidation.cpp
| | |    
| | * commit 3821a4ea00c42b3219faccfd19e0cd15ac150941
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Wed Jun 22 15:35:37 2011 +0200
| |   
| |       fixed bug where parameter in constructor was not saved
| |   
| |   M	src/libshogun/classifier/svm/LibLinear.cpp
| |   
| * commit 281f741235a6ff6bdad13a9506f7c8d65f9e600c
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 22 15:19:02 2011 +0200
| | 
| |     empty line removal
| | 
| | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| |   
| * commit 9b082091231a8267294d6c3125cc73aca0764bd5
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 22 15:18:25 2011 +0200
| | 
| |     first changed towards linear classifier
| | 
| | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| |   
| * commit 5705bc1b30665c678c92f7758f887acc52db3631
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 22 15:17:40 2011 +0200
| | 
| |     put initialization of epsilon variable into init() method to avoid uninitialized values (and following valgrind errors)
| | 
| | M	src/libshogun/classifier/svm/LibLinear.cpp
| |   
| * commit f666d7a8dd204b7839d0bcfcffbc76d84871beb2
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 22 15:16:38 2011 +0200
| | 
| |     name change of grid-search-example
| | 
| | D	examples/undocumented/libshogun/modelselection_grid_search.cpp
| | A	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| |   
| * commit 63d55afd6a1de9e5e5e1bc514712f965369778f7
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 22 15:01:10 2011 +0200
| | 
| |     working, memclean subset example for labels
| | 
| | M	examples/undocumented/libshogun/features_subset_labels.cpp
| |   
| * commit 896cad57b954ff4c55ac8af3381df6ddfc75647c
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 22 15:00:22 2011 +0200
| | 
| |     added wrapper for index conversion of subsets
| | 
| | M	src/libshogun/features/Labels.h
| |     
| *   commit 7ca4d43a7961e0e3ba73aa8f3781f2f1570ef9ce
| |\  Merge: 9ad818e d7cb64b
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 22 14:47:55 2011 +0200
| | | 
| | |     Merge branch 'master' into subset_label_example
| | |    
| | * commit d7cb64b0687a4df18e9ae2cf6c20518cd852c492
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 22 14:47:36 2011 +0200
| | | 
| | |     removed an old comment
| | | 
| | | M	examples/undocumented/libshogun/features_subset_simple_features.cpp
| | |    
| * | commit 9ad818ed60d3064b38c7acb30611214b51310842
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Wed Jun 22 14:45:54 2011 +0200
| |   
| |       example for subsets in CLabels
| |   
| |   A	examples/undocumented/libshogun/features_subset_labels.cpp
| |   
| * commit a58e4dff2e9c3829486140a0cdbe3fb653be9041
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 22 14:42:27 2011 +0200
| | 
| |     removed comment according to Soeren's suggestion
| | 
| | M	src/libshogun/features/SimpleFeatures.h
| |   
| * commit 6b779f8a75bcad5b89926cf7d51a163f70958327
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 22 14:33:43 2011 +0200
| | 
| |     usage of new matrix constructor
| | 
| | M	examples/undocumented/libshogun/features_subset_simple_features.cpp
| |   
| * commit 3c0b24b35c43e7f4ae0eb8d250b6cedbe659d376
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 22 14:29:47 2011 +0200
| | 
| |     added constructor for SGVector and SGMatrix that create new data in memory
| | 
| | M	src/libshogun/lib/DataType.h
| |   
| * commit 58c28f3dfe12db8e8f271c99aee2c208729da63e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 22 14:28:34 2011 +0200
| | 
| |     name of example changed
| | 
| | A	examples/undocumented/libshogun/features_subset_simple_features.cpp
| | D	examples/undocumented/libshogun/subset_simple_features.cpp
| |     
| *   commit 0434901313fca07c8f2d4fb52efe2a58d55011b9
| |\  Merge: 3fa1b11 045dc3a
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/|   Date:   Wed Jun 22 14:18:22 2011 +0200
| |   
| |       Merge remote branch 'upstream/master'
| |   
* | commit 045dc3aeec570d5d9ba8dffcfb0918a7fc0cfabb
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 21 23:38:11 2011 +0200
| | 
| |     use whitespace in docu
| | 
| | M	src/configure
| |   
* | commit b85b3fa41fce021a2b80784e0503629c7aa81631
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Tue Jun 21 20:50:42 2011 +0530
| | 
| |     Switched to vlen nomenclature for SGVector objects instead of length in parser and ring code.
| | 
| | M	src/libshogun/lib/InputParser.h
| | M	src/libshogun/lib/ParseBuffer.h
| |   
* | commit 356544723ce2fd8aa59f84103c6dc2c44886a0b9
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Tue Jun 21 18:13:18 2011 +0530
| | 
| |     Made dynamic reallocation possible for features. size for parser is now in terms of ring size wrt number of examples.
| | 
| | M	src/libshogun/lib/InputParser.h
| | M	src/libshogun/lib/ParseBuffer.h
| | M	src/libshogun/lib/StreamingFile.cpp
| | M	src/libshogun/lib/StreamingFile.h
| |     
* |   commit 096f05b98e3423902a98cca52a96644324f6dffb
|\ \  Merge: 4541613 cbd0931
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Tue Jun 21 18:10:11 2011 +0530
| | | 
| | |     Merge remote-tracking branch 'upstream/master' into streaming
| | |    
| * | commit cbd09317f01c59b629d45cf81a267cf574531cab
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue Jun 21 16:07:36 2011 +0400
| | | 
| | |     ASSERT replacement for LocallyLinearEmbedding
| | | 
| | | M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | |    
* | | commit 4541613206d5a6fe99c0e2eafecc49927ae0c7a3
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sun Jun 19 05:31:37 2011 +0530
| | | 
| | |     Cleaning up of StreamingFeatures and StreamingDotFeatures. Both are abstract classes.
| | | 
| | | A	src/libshogun/features/StreamingDotFeatures.h
| | | A	src/libshogun/features/StreamingFeatures.h
| | |    
* | | commit cb6eae7a0fdac0fca7fbf5a2186e175bf187043c
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Fri Jun 17 22:29:14 2011 +0530
| | | 
| | |     Added global tag files to .gitignore.
| | | 
| | | M	.gitignore
| | |    
| | * commit 3fa1b11749c4c6b2f4cdee104c0145d5cb0514f4
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 21 13:52:21 2011 +0200
| | | 
| | |     removed unused includes
| | | 
| | | M	examples/undocumented/libshogun/subset_simple_features.cpp
| | |    
| | * commit 7763f5d1290c051cc5f452e9229659c1020ad985
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 21 13:36:33 2011 +0200
| | | 
| | |     fixed bug (?) where output label array was deleted
| | | 
| | | M	src/libshogun/machine/LinearMachine.cpp
| | |    
| | * commit 0a24071115034c77509d445e07a7b8d31370e98b
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 21 12:53:59 2011 +0200
| | | 
| | |     added SimpleFeatures subset example
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | |    
| | * commit e2b83cd9fba7834dbcc02e9b3760e7eba997cd9d
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 21 12:53:47 2011 +0200
| | | 
| | |     working, memclean example for SimpleFeatures
| | | 
| | | A	examples/undocumented/libshogun/subset_simple_features.cpp
| | |    
| | * commit f16b9939d96c0a5fd5d0972800ecf3c61df21a66
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 21 12:53:18 2011 +0200
| | | 
| | |     Subset is now accessed via inherited methods of CFeatures
| | | 
| | | M	src/libshogun/features/StringFeatures.h
| | |    
| | * commit 88624b57f8ddf7a0aea41337ab6fb7ae3dffa016
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 21 12:52:44 2011 +0200
| | | 
| | |     made read methods const
| | | 
| | | M	src/libshogun/features/Subset.h
| | |    
| | * commit 62d25c0368cf3da93a3405abf8cdb5b841ae7a78
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 21 12:52:33 2011 +0200
| | | 
| | |     first tested version of subset support
| | | 
| | | M	src/libshogun/features/SimpleFeatures.h
| | |    
| | * commit 8fed25feb247079f90ffc141f625bc1c3ba1424e
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 21 12:52:10 2011 +0200
| | | 
| | |     -made Subset variable private
| | |     -made read methods const
| | | 
| | | M	src/libshogun/features/Labels.h
| | |    
| | * commit 77d0155dfc46a4a54510bd34c2a38f768104a2b7
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 21 12:51:44 2011 +0200
| | | 
| | |     -made Subset variable private
| | |     -made read methods const
| | | 
| | | M	src/libshogun/features/Features.h
| | |      
| | *   commit 43f83cfc081c8ce79d0d0bee1b71f48f558c21d9
| | |\  Merge: cee8bc9 d20d826
| | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/|   Date:   Tue Jun 21 11:14:39 2011 +0200
| | |   
| | |       Merge remote branch 'upstream/master' into SimpleFeaturesSubset
| | |       
| | |       Conflicts:
| | |       	src/libshogun/features/SimpleFeatures.h
| | |    
| * | commit d20d826cdc4dc57822cf5b5610eeadc8962a6d59
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jun 21 01:31:40 2011 +0200
| | | 
| | |     fix labels related crasher in mkl multiclass
| | | 
| | | M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| | |    
| * | commit 769d80f4abec74f989d969534eb984dd0197a0b5
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jun 21 01:31:31 2011 +0200
| | | 
| | |     T** transition in wd kernels and sginterface
| | | 
| | | M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| | | M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| | | M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| | | M	src/libshogun/kernel/WeightedDegreeStringKernel.h
| | | M	src/libshogunui/SGInterface.cpp
| | |    
| * | commit 76c37e2226460c78284a2192ec43a7521b7a3015
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jun 20 22:32:02 2011 +0200
| | | 
| | |     fix compile error in mkl multiclass example
| | | 
| | | M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| | |    
| * | commit f5341bea3e93b0015c3221cc0185880554d887a6
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jun 20 22:25:20 2011 +0200
| | | 
| | |     fix cshapr compile error
| | | 
| | | M	src/csharp_modular/swig_typemaps.i
| | |    
| * | commit b3f2f9609b9ceebc9ce1b476f790d3bbebd0e58f
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jun 20 22:13:12 2011 +0200
| | | 
| | |     T** transition for sparse features
| | | 
| | | M	src/libshogun/features/SparseFeatures.h
| | |    
| * | commit f61db8e6c7b01a3f63d5b108152250d70a841859
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jun 20 21:39:56 2011 +0200
| | | 
| | |     fix typo -> use free_vector() to free
| | | 
| | | M	src/csharp_modular/swig_typemaps.i
| | |    
| * | commit 95ce7893078a280b2b89e140d7a762770641b177
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jun 20 21:39:07 2011 +0200
| | | 
| | |     fix a bug in KRR label getting
| | | 
| | | M	src/libshogun/regression/KRR.cpp
| | |      
| * |   commit 880d41847d5b18897471230d8e4d04d611d7a93c
| |\ \  Merge: a909a9f ab158e1
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jun 20 21:01:11 2011 +0200
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |     
| | * | commit ab158e1a3c5677b37386a49135df3970e81f2c1d
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Mon Jun 20 21:57:52 2011 +0400
| | | | 
| | | |     Classify->apply transition for graphical python modular examples
| | | | 
| | | | M	examples/undocumented/python_modular/graphical/krr_sinc.py
| | | | M	examples/undocumented/python_modular/graphical/svr_sinc.py
| | | | M	examples/undocumented/python_modular/graphical/util.py
| | | |     
| * | | commit a909a9f8b12b394ff106d0d1b36aa3cda91baddf
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jun 20 21:00:29 2011 +0200
| | | | 
| | | |     require new data
| | | | 
| | | | M	data
| | | |     
| * | | commit dd63a895f67949d6967c27abfd66ff8f213fe581
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jun 20 21:00:02 2011 +0200
| | | | 
| | | |     continue T** transition and fix compilation of static interfaces
| | | | 
| | | | M	src/libshogun/clustering/KMeans.h
| | | | M	src/libshogun/features/SimpleFeatures.h
| | | | M	src/libshogun/features/SparseFeatures.h
| | | | M	src/libshogunui/GUIClassifier.cpp
| | | | M	src/libshogunui/GUIFeatures.cpp
| | | | M	src/libshogunui/GUIKernel.cpp
| | | |     
| | | * commit cee8bc900fe6cbb93d6ed5dba7237bf5813bae72
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Jun 20 19:56:03 2011 +0200
| | | | 
| | | |     simple mistake
| | | | 
| | | | M	src/libshogun/features/SimpleFeatures.h
| | | |     
| | | * commit ed946d735b52b5e5c8958b9d8f16fbc4bcb75121
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Jun 20 19:55:11 2011 +0200
| | | | 
| | | |     more work towards subset support
| | | | 
| | | | M	src/libshogun/features/SimpleFeatures.h
| | | |       
| | | *   commit 2ed170b88d712bce7f85086ed2143de33879a2ba
| | | |\  Merge: 9b1d220 c7daae3
| | | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |/|   Date:   Mon Jun 20 19:26:48 2011 +0200
| | | |   
| | | |       Merge remote branch 'upstream/master' into SimpleFeaturesSubset
| | | |     
| | * | commit c7daae38d5f7112d40cad2a3e2668afd76dcb25b
| |/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | |   Date:   Mon Jun 20 17:09:06 2011 +0400
| | |   
| | |       Small fix for ClassicMDS
| | |   
| | |   M	src/libshogun/preprocessor/ClassicMDS.cpp
| | |      
| * |   commit a71be6a551e9bae8e0992fcc8ec4eafa09b793a2
| |\ \  Merge: e72475c 478e05f
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jun 20 14:22:24 2011 +0200
| | | | 
| | | |     Merge branch 'master' of git://github.com/SergeyLisitsyn/shogun
| | | |     
| | * | commit 478e05fbd5c7be8cd94d22579745669503b19515
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Mon Jun 20 16:19:19 2011 +0400
| | | | 
| | | |     Fixes for Features and SpectrumRBFkernel
| | | | 
| | | | M	src/libshogun/features/SimpleFeatures.h
| | | | M	src/libshogun/features/StringFeatures.h
| | | | M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| | | |     
| * | | commit e72475c7cc79672edaf3c8dc6da6e78a719f6db1
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Mon Jun 20 14:06:50 2011 +0200
| | |   
| | |       utilize free_vector/free_matrix in typemaps
| | |   
| | |   M	src/csharp_modular/swig_typemaps.i
| | |   M	src/java_modular/swig_typemaps.i
| | |   M	src/libshogun/lib/DataType.h
| | |   M	src/octave_modular/swig_typemaps.i
| | |   M	src/python_modular/swig_typemaps.i
| | |   M	src/r_modular/swig_typemaps.i
| | |   M	src/ruby_modular/swig_typemaps.i
| | |    
| * | commit 2cf4b40f880d662ec1b3f7bb36196626e3ad087c
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Jun 20 15:04:43 2011 +0400
| | | 
| | |     vector length renaming
| | | 
| | | M	src/libshogun/evaluation/CrossValidation.cpp
| | | M	src/libshogun/features/Labels.cpp
| | | M	src/libshogun/features/Subset.cpp
| | |    
| * | commit df429ebaebe145171cec9f727ef81fe188b1e7ec
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jun 20 12:50:15 2011 +0200
| | | 
| | |     fix typo
| | | 
| | | M	src/libshogun/lib/DataType.h
| | |    
| * | commit 3082f37e5011ef22ea5cd10c4fa9ebbefd109ce3
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jun 20 12:30:02 2011 +0200
| | | 
| | |     remove trailing whitespaces
| | | 
| | | M	src/java_modular/swig_typemaps.i
| | | M	src/lua_modular/swig_typemaps.i
| | |      
| * |   commit 890117267378d86cad7bf1dcdef93b68b4951b38
| |\ \  Merge: 2eb94d6 c5a09ba
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jun 20 12:25:11 2011 +0200
| | | | 
| | | |     Merge branch 'master' of git://github.com/SergeyLisitsyn/shogun
| | | |       
| | * |   commit c5a09bafdc26696d7e48ca6b87d3cceca4fcfcf9
| | |\ \  Merge: 3937a21 1a4582d
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Jun 20 14:22:37 2011 +0400
| | | | | 
| | | | |     Merge branch 'master' of https://github.com/shogun-toolbox/shogun
| | | | |      
| | * | | commit 3937a217e074df34695dc150b48c9129e9208fb5
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Jun 20 14:22:20 2011 +0400
| | | | | 
| | | | |     Fixes for Hierarchical clustering
| | | | | 
| | | | | M	src/libshogun/clustering/Hierarchical.h
| | | | |        
| | | | *   commit 9b1d2201597b4b7989cf645bf720c022e7c2b724
| | | | |\  Merge: 6d4a1a2 2eb94d6
| | |_|_|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/| | |   Date:   Mon Jun 20 12:22:50 2011 +0200
| | | | |   
| | | | |       Merge branch 'master' into SimpleFeaturesSubset
| | | | |        
| * | | |   commit 2eb94d653f5ccc8dd58cd1f965823b0e92bb9a40
| |\ \ \ \  Merge: 6d4705c 3e69bee
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Jun 20 12:20:48 2011 +0200
| | | | | | 
| | | | | |     Merge branch 'toCheckin'
| | | | | |       
| | * | | | commit 3e69beea8a30425c66347bb030efb5e84f182324
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Jun 20 12:20:19 2011 +0200
| | | | | | 
| | | | | |     removed get_subset_copy wrapper
| | | | | | 
| | | | | | M	src/libshogun/features/Labels.h
| | | | | |       
| | * | | | commit 25b80a3eba15fa62a24d74cbf3d9d0e8f22dd661
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Jun 20 12:19:51 2011 +0200
| | | | | | 
| | | | | |     removed get_subset_copy wrapper
| | | | | | 
| | | | | | M	src/libshogun/features/Features.h
| | | | | |       
| | * | | | commit 5fe0797e795c3ef2e70f853d4839911702d0559b
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Jun 20 12:19:37 2011 +0200
| | | | | | 
| | | | | |     added wrapper methods for new Subset interface
| | | | | | 
| | | | | | M	src/libshogun/features/StringFeatures.h
| | | | | |       
| | * | | | commit 2f34510319e4403a6aad7855c626f958269691d0
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Jun 20 12:19:15 2011 +0200
| | | | | | 
| | | | | |     removed get_subset_copy
| | | | | | 
| | | | | | M	src/libshogun/features/Subset.cpp
| | | | | | M	src/libshogun/features/Subset.h
| | | | | |       
| | * | | | commit 9e4622639185cf2dae3d33765be3fa8c6ad158b5
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Jun 20 12:14:15 2011 +0200
| | | | | | 
| | | | | |     removed string include
| | | | | | 
| | | | | | M	src/libshogun/features/Subset.cpp
| | | | | |         
| * | | | |   commit 6d4705c3486b3ad2e5aa9f85a6765d42a4dade62
| |\ \ \ \ \  Merge: 48cb8e0 1a4582d
| | |/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/| | / /   Date:   Mon Jun 20 12:20:44 2011 +0200
| | | |/ /    
| | |/| |         Merge remote branch 'upstream/master'
| | | | |        
| | * | |   commit 1a4582d6fa8f4289c4694bb515eab74d9c02707e
| | |\ \ \  Merge: 84caa72 7525d58
| | | |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | |   Date:   Mon Jun 20 12:17:03 2011 +0200
| | | | |   
| | | | |       Merge branch 'master' of git://github.com/SergeyLisitsyn/shogun
| | | | |      
| | | * | commit 7525d58bab8236e0463ec9b393cd6b9ff5024f6b
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Jun 20 14:12:12 2011 +0400
| | | | | 
| | | | |     Fix for CustomKernel
| | | | | 
| | | | | M	src/libshogun/kernel/CustomKernel.cpp
| | | | |      
| | | * | commit 176a1b2419fd125c621633d3e9fb3b078e508c33
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Jun 20 14:08:50 2011 +0400
| | | | | 
| | | | |     Fixes for Alesis code
| | | | | 
| | | | | M	src/libshogun/clustering/GMM.cpp
| | | | | M	src/libshogun/clustering/GMM.h
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | |      
| | | * | commit 136be95898d380a700807a9279b8b518b77ebb76
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Jun 20 13:49:09 2011 +0400
| | | | | 
| | | | |     Fixes for KMeans
| | | | | 
| | | | | M	src/libshogun/clustering/KMeans.h
| | | | |      
| | | * | commit 69ccc0921284694ca79f40752af960b03456dc44
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Jun 20 13:32:59 2011 +0400
| | | | | 
| | | | |     Fixes for CustomKernel
| | | | | 
| | | | | M	src/libshogun/kernel/CustomKernel.cpp
| | | | | M	src/libshogun/kernel/CustomKernel.h
| | | | |      
| | | | * commit 6d4a1a2785c22367b1a48ea97e5acc8bce9c0999
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jun 20 12:01:11 2011 +0200
| | | | | 
| | | | |     corrected name due to method name change
| | | | | 
| | | | | M	src/libshogun/features/SimpleFeatures.h
| | | | |        
| | | | *   commit 0e4f105e214c71a24806e142d30120b240c2286b
| | | | |\  Merge: 90eb5ee 48cb8e0
| | |_|_|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/| | |   Date:   Mon Jun 20 11:54:57 2011 +0200
| | | | |   
| | | | |       Merge branch 'master' into SimpleFeaturesSubset
| | | | |       
| | | | |       Conflicts:
| | | | |       	src/libshogun/features/SimpleFeatures.h
| | | | |      
| * | | | commit 48cb8e04cc5fdc685274d5417cfb9604b8eaa418
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jun 20 11:50:38 2011 +0200
| | | | | 
| | | | |     Revert "initial changes for subset support"
| | | | |     
| | | | |     This reverts commit 69d62bead6b71f12dcb8ea77e0ae1cd1651ad072.
| | | | | 
| | | | | M	src/libshogun/features/SimpleFeatures.h
| | | | |      
| * | | | commit 562fed883d8427ee956bf87dbf6b42ee4b123ac2
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jun 20 11:49:41 2011 +0200
| | | | | 
| | | | |     Revert "Revert "added comment""
| | | | |     
| | | | |     This reverts commit c31b83b4d84c062b1c972b74b8944d328624e560.
| | | | | 
| | | | | M	src/libshogun/features/Subset.h
| | | | |      
| * | | | commit c31b83b4d84c062b1c972b74b8944d328624e560
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jun 20 11:49:11 2011 +0200
| | | | | 
| | | | |     Revert "added comment"
| | | | |     
| | | | |     This reverts commit 05ae96b0659bfb0dee354684a0d61b83e5a448b4.
| | | | | 
| | | | | M	src/libshogun/features/Subset.h
| | | | |        
| * | | |   commit 1a57d3939406022cc1d6e6b9636b3dcd881ca260
| |\ \ \ \  Merge: 84caa72 c5f2256
| | |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/| | |   Date:   Mon Jun 20 11:39:10 2011 +0200
| | | | |   
| | | | |       Merge branch 'toCheckin'
| | | | |       
| | | | |       Conflicts:
| | | | |       	src/libshogun/evaluation/CrossValidation.cpp
| | | | |      
| | * | | commit c5f2256fe4ec80c34315987783df232230eeab03
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jun 20 11:36:31 2011 +0200
| | | | | 
| | | | |     interface changes of Subset class
| | | | | 
| | | | | M	src/libshogun/features/StringFeatures.h
| | | | |      
| | * | | commit c6f3cbc16cd6f7a3ba3bb2fa5ca493c3935c648f
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jun 20 11:35:06 2011 +0200
| | | | | 
| | | | |     Subset class now uses SGVector
| | | | |     interface changes
| | | | | 
| | | | | M	src/libshogun/evaluation/CrossValidation.cpp
| | | | | M	src/libshogun/features/Features.h
| | | | | M	src/libshogun/features/Labels.cpp
| | | | | M	src/libshogun/features/Labels.h
| | | | | M	src/libshogun/features/Subset.cpp
| | | | | M	src/libshogun/features/Subset.h
| | | | |      
| * | | | commit 84caa72a8783182188f30c24c54fce8723bc458d
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Jun 20 11:34:10 2011 +0200
| | | | | 
| | | | |     introduce a do_free flag in sgvector/sgmatrix
| | | | | 
| | | | | M	src/libshogun/lib/DataType.h
| | | | |        
| * | | |   commit 532b5dfaf4d53959e94d608599e41b96155a0afc
| |\ \ \ \  Merge: 1327d08 891fb58
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Mon Jun 20 10:46:24 2011 +0200
| | | | | | 
| | | | | |     Merge branch 'master' of git://github.com/karlnapf/shogun
| | | | | |       
| | * | | | commit 891fb58c8eccfa4e0f10fb1e89cb8e921cfbcffb
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Jun 20 09:17:55 2011 +0200
| | | | | | 
| | | | | |     changed ED_MAXIMISE to ED_MAXMIMIZE. same for min
| | | | | | 
| | | | | | M	src/libshogun/evaluation/ContingencyTableEvaluation.cpp
| | | | | | M	src/libshogun/evaluation/Evaluation.h
| | | | | | M	src/libshogun/evaluation/MeanSquaredError.h
| | | | | | M	src/libshogun/evaluation/MulticlassAccuracy.h
| | | | | | M	src/libshogun/evaluation/PRCEvaluation.h
| | | | | | M	src/libshogun/evaluation/ROCEvaluation.h
| | | | | | M	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | | | | |       
| * | | | | commit 1327d083f9c0521ea154a1865ad7cf67b537e44c
| | |_|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | |   Date:   Mon Jun 20 10:45:09 2011 +0200
| | | | |   
| | | | |       T** transition for kernels in libshogunui
| | | | |   
| | | | |   M	src/libshogunui/GUIKernel.cpp
| | | | |   M	src/libshogunui/SGInterface.cpp
| | | | |      
| * | | | commit b95d2faf8b5fd82c268a6734b8d5344b7db23d42
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Jun 20 04:13:43 2011 +0400
| | | | | 
| | | | |     Various fixes
| | | | | 
| | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| | | | | M	src/libshogun/classifier/svm/SVM.cpp
| | | | | M	src/libshogun/classifier/svm/SVM.h
| | | | | M	src/libshogun/kernel/CustomKernel.cpp
| | | | | M	src/libshogun/kernel/CustomKernel.h
| | | | | M	src/libshogun/kernel/Kernel.cpp
| | | | | M	src/libshogun/kernel/Kernel.h
| | | | | M	src/libshogun/machine/KernelMachine.h
| | | | | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | | | M	src/libshogun/preprocessor/KernelPCACut.cpp
| | | | | M	src/libshogun/preprocessor/KernelPCACut.h
| | | | | M	src/libshogun/regression/KRR.cpp
| | | | |        
| * | | |   commit bdc3e2d7c96202ecbaf3472cdcbb90fa19b9495b
| |\ \ \ \  Merge: eecb6d6 9c9e74a
| | |/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | |   Date:   Mon Jun 20 02:45:40 2011 +0400
| | | | |   
| | | | |       Merge branch 'master' of https://github.com/shogun-toolbox/shogun
| | | | |      
| | * | | commit 9c9e74a339780a54561052042c481fff67fd83fd
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Jun 20 00:41:43 2011 +0200
| | | | | 
| | | | |     get rid of legacy T* x, int32_t len / or T** typemaps and transition everything to SGMatrix and friends
| | | | | 
| | | | | M	src/csharp_modular/swig_typemaps.i
| | | | | M	src/java_modular/swig_typemaps.i
| | | | | M	src/libshogun/base/Parameter.cpp
| | | | | M	src/libshogun/evaluation/CrossValidation.cpp
| | | | | M	src/libshogun/evaluation/SplittingStrategy.cpp
| | | | | M	src/libshogun/features/Labels.cpp
| | | | | M	src/libshogun/lib/DataType.h
| | | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | | M	src/libshogun/preprocessor/LogPlusOne.cpp
| | | | | M	src/libshogun/preprocessor/NormOne.cpp
| | | | | M	src/libshogun/preprocessor/PCACut.cpp
| | | | | M	src/libshogun/preprocessor/PruneVarSubMean.cpp
| | | | | M	src/lua_modular/swig_typemaps.i
| | | | | M	src/modular/Classifier.i
| | | | | M	src/modular/Clustering.i
| | | | | M	src/modular/Distance.i
| | | | | M	src/modular/Distribution.i
| | | | | M	src/modular/Evaluation.i
| | | | | M	src/modular/Features.i
| | | | | M	src/modular/Kernel.i
| | | | | M	src/modular/Library.i
| | | | | M	src/modular/Preprocessor.i
| | | | | M	src/modular/Regression.i
| | | | | M	src/modular/Structure.i
| | | | | M	src/octave_modular/swig_typemaps.i
| | | | | M	src/python_modular/swig_typemaps.i
| | | | | M	src/r_modular/sg_print_functions.cpp
| | | | | M	src/r_modular/swig_typemaps.i
| | | | | M	src/ruby_modular/swig_typemaps.i
| | | | |      
| | * | | commit bee38a562e12f48c65f0baa1963d164966da607b
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Sun Jun 19 20:01:57 2011 +0200
| | | | | 
| | | | |     fix compilation errors in libshogunui caused by preproc refactoring
| | | | | 
| | | | | M	src/libshogunui/GUIPreprocessor.cpp
| | | | | M	src/libshogunui/SGInterface.cpp
| | | | |      
| * | | | commit eecb6d6a3b8cfe9fd8840f1f1ac48724a85f6f04
| |/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | |   Date:   Mon Jun 20 01:46:07 2011 +0400
| | | |   
| | | |       SGMatrix usage for CKNN
| | | |   
| | | |   M	examples/undocumented/python_modular/classifier_knn_modular.py
| | | |   M	src/libshogun/classifier/KNN.cpp
| | | |   M	src/libshogun/classifier/KNN.h
| | | |     
| * | | commit bbd6767450b0eabeea9d1e71c78610d4dc30402d
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sun Jun 19 19:51:01 2011 +0200
| | | | 
| | | |     really remove all occurences of NormDerivativeLem3
| | | | 
| | | | M	src/modular/Preprocessor_includes.i
| | | |     
| * | | commit a26d599e80a6532b530fdb6ac7d7847b76911408
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sun Jun 19 17:19:07 2011 +0200
| | | | 
| | | |     remove dysfunctional/not-implemented preproc
| | | | 
| | | | D	src/libshogun/preprocessor/NormDerivativeLem3.cpp
| | | | D	src/libshogun/preprocessor/NormDerivativeLem3.h
| | | | M	src/modular/Preprocessor.i
| | | |     
| * | | commit 0c142320fb4b0382a16345f603d81346bc0035eb
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Jun 19 17:53:16 2011 +0400
| | | | 
| | | |     Rearranged modular config for Preprocessor
| | | | 
| | | | M	src/modular/Preprocessor.i
| | | | M	src/modular/Preprocessor_includes.i
| | | |     
| * | | commit 6b7038817c846f2582d278cc02d5848ff77cb94d
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Jun 19 17:52:41 2011 +0400
| | | | 
| | | |     Various fixes for examples
| | | | 
| | | | M	examples/undocumented/python_modular/distance_canberraword_modular.py
| | | | M	examples/undocumented/python_modular/distance_hammingword_modular.py
| | | | M	examples/undocumented/python_modular/distance_manhattenword_modular.py
| | | | M	examples/undocumented/python_modular/features_string_char_compressed_modular.py
| | | | M	examples/undocumented/python_modular/kernel_comm_ulong_string_modular.py
| | | | M	examples/undocumented/python_modular/kernel_comm_word_string_modular.py
| | | | M	examples/undocumented/python_modular/kernel_weighted_comm_word_string_modular.py
| | | | M	examples/undocumented/python_modular/preprocessor_classicmds_modular.py
| | | | M	examples/undocumented/python_modular/preprocessor_isomap_modular.py
| | | | A	examples/undocumented/python_modular/preprocessor_kernelpcacut_modular.py
| | | | M	examples/undocumented/python_modular/preprocessor_locallylinearembedding_modular.py
| | | | M	examples/undocumented/python_modular/preprocessor_logplusone_modular.py
| | | | A	examples/undocumented/python_modular/preprocessor_pcacut_modular.py
| | | | M	examples/undocumented/python_modular/preprocessor_prunevarsubmean_modular.py
| | | | A	examples/undocumented/python_modular/preprocessor_randomfouriergausspreproc_modular.py
| | | | M	examples/undocumented/python_modular/preprocessor_sortulongstring_modular.py
| | | | M	examples/undocumented/python_modular/preprocessor_sortwordstring_modular.py
| | | | M	examples/undocumented/python_modular/tests_check_commwordkernel_memleak_modular.py
| | | |     
| * | | commit 8a0e98363449a777dfc19effb4417ab5e26540d4
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Jun 19 17:52:02 2011 +0400
| | | | 
| | | |     Fixed naming {preproc}->{preprocessor}
| | | | 
| | | | M	src/libshogun/features/Features.cpp
| | | | M	src/libshogun/features/Features.h
| | | | M	src/libshogun/features/SimpleFeatures.h
| | | | M	src/libshogun/features/SparseFeatures.h
| | | | M	src/libshogun/features/StringFeatures.h
| | | | M	src/libshogun/kernel/CommWordStringKernel.cpp
| | | | M	src/libshogun/kernel/WeightedCommWordStringKernel.cpp
| | | |     
| * | | commit f8cd65080126ec9625f17b9c5243f7d34432dc60
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Jun 19 17:50:14 2011 +0400
| | | | 
| | | |     SGMatrix and SGVector usage in Preprocessor
| | | | 
| | | | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | | M	src/libshogun/preprocessor/ClassicMDS.h
| | | | A	src/libshogun/preprocessor/DimensionReductionPreprocessor.h
| | | | M	src/libshogun/preprocessor/Isomap.cpp
| | | | M	src/libshogun/preprocessor/Isomap.h
| | | | M	src/libshogun/preprocessor/KernelPCACut.cpp
| | | | M	src/libshogun/preprocessor/KernelPCACut.h
| | | | M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | | | M	src/libshogun/preprocessor/LocallyLinearEmbedding.h
| | | | M	src/libshogun/preprocessor/LogPlusOne.cpp
| | | | M	src/libshogun/preprocessor/LogPlusOne.h
| | | | M	src/libshogun/preprocessor/NormDerivativeLem3.cpp
| | | | M	src/libshogun/preprocessor/NormDerivativeLem3.h
| | | | M	src/libshogun/preprocessor/NormOne.cpp
| | | | M	src/libshogun/preprocessor/NormOne.h
| | | | M	src/libshogun/preprocessor/PCACut.cpp
| | | | M	src/libshogun/preprocessor/PCACut.h
| | | | M	src/libshogun/preprocessor/PruneVarSubMean.cpp
| | | | M	src/libshogun/preprocessor/PruneVarSubMean.h
| | | | M	src/libshogun/preprocessor/RandomFourierGaussPreproc.cpp
| | | | M	src/libshogun/preprocessor/RandomFourierGaussPreproc.h
| | | | M	src/libshogun/preprocessor/SimplePreprocessor.h
| | | |     
| | | * commit 90eb5ee5d49106393553e9e1d6174af767169abb
| | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Mon Jun 20 11:36:53 2011 +0200
| | |   
| | |       initial compiling subset support
| | |   
| | |   M	src/libshogun/features/SimpleFeatures.h
| | |    
| | * commit 71ed0320215650056e1f43db0b359b1307234ec8
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Jun 20 11:25:00 2011 +0200
| | | 
| | |     Revert "changed subset methods and added SGVector"
| | |     
| | |     This reverts commit 24702d649141fbc45a436d543ca01e5d00900557.
| | | 
| | | M	src/libshogun/features/Subset.cpp
| | | M	src/libshogun/features/Subset.h
| | |    
| | * commit 24702d649141fbc45a436d543ca01e5d00900557
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Jun 20 11:24:12 2011 +0200
| | | 
| | |     changed subset methods and added SGVector
| | | 
| | | M	src/libshogun/features/Subset.cpp
| | | M	src/libshogun/features/Subset.h
| | |    
| | * commit 69d62bead6b71f12dcb8ea77e0ae1cd1651ad072
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Mon Jun 20 09:09:17 2011 +0200
| |   
| |       initial changes for subset support
| |   
| |   M	src/libshogun/features/SimpleFeatures.h
| |   
| * commit 05ae96b0659bfb0dee354684a0d61b83e5a448b4
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Jun 19 12:05:45 2011 +0200
| | 
| |     added comment
| | 
| | M	src/libshogun/features/Subset.h
| |   
| * commit 6758a80616bb54d7d0f0bc3b8e5b720aecbf4ae3
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Jun 19 12:04:02 2011 +0200
| | 
| |     added subset support
| | 
| | M	src/libshogun/features/Labels.cpp
| | M	src/libshogun/features/Labels.h
| |   
| * commit 6a9583ecf986d85f5eb358fa2c86c81e83cfa5cd
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Jun 19 12:03:21 2011 +0200
| | 
| |     added wrapper methods for subset
| | 
| | M	src/libshogun/features/Features.h
| |   
| * commit 00f4430fb7da4b414c3eb87812a6207992e0b4a8
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Jun 19 12:03:04 2011 +0200
| | 
| |     fixed error with labels and removed backuping subsets
| | 
| | M	src/libshogun/evaluation/CrossValidation.cpp
| |   
| * commit 486d7367eb5f79e535206af45a38625b6fe082a1
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Jun 19 12:02:32 2011 +0200
| | 
| |     adapted new class name of ParameterCombination
| | 
| | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| |     
| *   commit da292320194cdfa6787496bebd8f41f3360271a5
| |\  Merge: 5b0451c dfe5bdf
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sun Jun 19 11:17:53 2011 +0200
| | | 
| | |     Merge remote branch 'upstream/master'
| | |      
| | *   commit dfe5bdf78a1e2301293fa5347496ba5d8ffb8380
| | |\  Merge: b0c6415 80f768e
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sun Jun 19 00:01:17 2011 +0200
| | | | 
| | | |     Merge branch 'master' of git://github.com/SergeyLisitsyn/shogun
| | | |     
| | | * commit 80f768ef43ce92a86d14800c3b0b484000b1eeb8
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Jun 19 01:59:36 2011 +0400
| | | | 
| | | |     Fixed C{ROC,PRC}Evaluation classes
| | | | 
| | | | M	examples/undocumented/python_modular/graphical/prc.py
| | | | M	examples/undocumented/python_modular/graphical/roc.py
| | | | M	src/libshogun/evaluation/PRCEvaluation.cpp
| | | | M	src/libshogun/evaluation/PRCEvaluation.h
| | | | M	src/libshogun/evaluation/ROCEvaluation.cpp
| | | | M	src/libshogun/evaluation/ROCEvaluation.h
| | | |     
| | * | commit b0c64158af770325900c53da28986eed75af5f16
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sat Jun 18 23:49:05 2011 +0200
| | | | 
| | | |     add SGMatrix<float64_t> support to custom kernel constructor
| | | | 
| | | | M	src/libshogun/kernel/CustomKernel.cpp
| | | | M	src/libshogun/kernel/CustomKernel.h
| | | |     
| | * | commit 1b54f6b050b587761c12fc0eca02ac8c82a0bedb
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sat Jun 18 23:46:57 2011 +0200
| | | | 
| | | |     don't output anything in check script
| | | | 
| | | | M	examples/undocumented/java_modular/check.sh
| | | |     
| | * | commit 3c48b36fc32988435ad6687d211ee59334b6cca1
| | |/  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Sat Jun 18 23:46:12 2011 +0200
| | |   
| | |       add a dummy return statement - even though it never reached it fixes a
| | |       compiler warning
| | |   
| | |   M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | |    
| | * commit e8143c544dafb47a81f5fe4b94420afa550a3230
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jun 19 01:00:47 2011 +0400
| | | 
| | |     Fixed examples
| | | 
| | | M	examples/undocumented/python_modular/preprocessor_classicmds_modular.py
| | | M	examples/undocumented/python_modular/preprocessor_isomap_modular.py
| | | M	examples/undocumented/python_modular/preprocessor_locallylinearembedding_modular.py
| | |      
| | *   commit 2e114b5645c54c67b64f0c990d99283035d80fa3
| | |\  Merge: 0b0ffa7 42afb17
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sat Jun 18 22:34:57 2011 +0200
| | | | 
| | | |     Merge branch 'master' of git://github.com/SergeyLisitsyn/shogun
| | | |     
| | | * commit 42afb172e00f6e88fa831b8bd51841e429845823
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sat Jun 18 15:49:30 2011 +0400
| | | | 
| | | |     Added examples for new preprocessors. Fixed names for existing
| | | | 
| | | | D	examples/undocumented/python_modular/preproc_logplusone_modular.py
| | | | D	examples/undocumented/python_modular/preproc_normone_modular.py
| | | | D	examples/undocumented/python_modular/preproc_prunevarsubmean_modular.py
| | | | D	examples/undocumented/python_modular/preproc_sortulongstring_modular.py
| | | | D	examples/undocumented/python_modular/preproc_sortwordstring_modular.py
| | | | A	examples/undocumented/python_modular/preprocessor_classicmds_modular.py
| | | | A	examples/undocumented/python_modular/preprocessor_isomap_modular.py
| | | | A	examples/undocumented/python_modular/preprocessor_locallylinearembedding_modular.py
| | | | A	examples/undocumented/python_modular/preprocessor_logplusone_modular.py
| | | | A	examples/undocumented/python_modular/preprocessor_normone_modular.py
| | | | A	examples/undocumented/python_modular/preprocessor_prunevarsubmean_modular.py
| | | | A	examples/undocumented/python_modular/preprocessor_sortulongstring_modular.py
| | | | A	examples/undocumented/python_modular/preprocessor_sortwordstring_modular.py
| | | |       
| | * |   commit 0b0ffa7ac2959c46e6d57376a9b41c6af5688334
| | |\ \  Merge: c58720e 462b0c0
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Sat Jun 18 22:34:50 2011 +0200
| | | | | 
| | | | |     Merge branch 'lle' of git://github.com/SergeyLisitsyn/shogun
| | | | |      
| | | * | commit 462b0c09d69f387e93bcb9cb7f179a2a68d1ae8e
| | | |/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | |   Date:   Sat Jun 18 15:06:10 2011 +0400
| | | |   
| | | |       Use DPOSV instead of DGESV for linear system
| | | |   
| | | |   M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | | |     
| | * | commit c58720ed8d3ee3b374d0c17552c80317d45f7938
| | |/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | |   Date:   Sat Jun 18 01:51:05 2011 +0400
| | |   
| | |       Some isomap refactoring
| | |   
| | |   M	src/libshogun/preprocessor/ClassicMDS.h
| | |   M	src/libshogun/preprocessor/Isomap.cpp
| | |   M	src/libshogun/preprocessor/Isomap.h
| | |    
| | * commit 7778ddf88b71391fe550d0dbb411c8566aaac438
| |/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|/|   Date:   Sat Jun 18 00:13:46 2011 +0400
| |   
| |       Fixes for LLE
| |   
| |   M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| |   
* | commit 876874924b3434dd03b6671ff309c3ce09e5a6db
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Fri Jun 17 17:27:03 2011 +0530
| | 
| |     v_array.h fix.
| | 
| | M	src/libshogun/lib/v_array.h
| |     
* |   commit 48ea63c30f7577af828c132dedc16600d0153110
|\ \  Merge: 4c1d91d 3bbb4a5
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Fri Jun 17 17:26:03 2011 +0530
| | | 
| | |     Commit for fixing compile errors.
| | |    
| * | commit 3bbb4a5e5c7947e6ba5a6b91415aec8a0523615a
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jun 17 12:19:05 2011 +0200
| | | 
| | |     temporary fix for compiler errors
| | | 
| | | M	src/libshogun/features/StreamingFeatures.h
| | | A	src/libshogun/lib/v_array.h
| | |    
| * | commit 0724fd99ded1dc5e3af3058d6c566820fd770438
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Fri Jun 17 17:44:02 2011 +0800
| | | 
| | |     add kernel_auc_modular example, this example crash jvm, please help check it
| | | 
| | | A	examples/undocumented/java_modular/kernel_auc_modular.java
| | |    
| * | commit 54bb0a1b26d54ca2a8f175c1fa35cb084dd22438
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Fri Jun 17 17:32:24 2011 +0800
| | | 
| | |     add some distance examples and  kernel examples, fix kerenl.i to support distance
| | | 
| | | A	examples/undocumented/java_modular/distance_braycurtis_modular.java
| | | A	examples/undocumented/java_modular/distance_canberra_modular.java
| | | A	examples/undocumented/java_modular/distance_chebyshew_modular.java
| | | A	examples/undocumented/java_modular/distance_chisquare_modular.java
| | | A	examples/undocumented/java_modular/distance_cosine_modular.java
| | | A	examples/undocumented/java_modular/distance_euclidian_modular.java
| | | A	examples/undocumented/java_modular/distance_geodesic_modular.java
| | | A	examples/undocumented/java_modular/distance_jensen_modular.java
| | | A	examples/undocumented/java_modular/distance_manhatten_modular.java
| | | A	examples/undocumented/java_modular/distance_minkowski_modular.java
| | | A	examples/undocumented/java_modular/distance_normsquared_modular.java
| | | A	examples/undocumented/java_modular/distance_tanimoto_modular.java
| | | A	examples/undocumented/java_modular/evaluation_contingencytableevaluation_modular.java
| | | A	examples/undocumented/java_modular/evaluation_meansquarederror_modular.java
| | | A	examples/undocumented/java_modular/evaluation_multiclassaccuracy_modular.java
| | | A	examples/undocumented/java_modular/evaluation_prcevaluation_modular.java
| | | A	examples/undocumented/java_modular/evaluation_rocevaluation_modular.java
| | | A	examples/undocumented/java_modular/kernel_cauchy_modular.java
| | | A	examples/undocumented/java_modular/kernel_chi2_modular.java
| | | A	examples/undocumented/java_modular/kernel_circular_modular.java
| | | A	examples/undocumented/java_modular/kernel_combined_custom_poly_modular.java
| | | A	examples/undocumented/java_modular/kernel_const_modular.java
| | | A	examples/undocumented/java_modular/kernel_diag_modular.java
| | | A	examples/undocumented/java_modular/kernel_distance_modular.java
| | | M	src/modular/Kernel.i
| | |    
* | | commit 4c1d91de4aa7a2b434dfb12925a434e210caa309
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Fri Jun 17 17:22:39 2011 +0530
| | | 
| | |     Fixed license of v_array.h
| | | 
| | | M	src/libshogun/lib/v_array.h
| | |    
* | | commit 9a5e66e783b7ca6df2892fa0b684ae911d016ac7
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Fri Jun 17 17:20:58 2011 +0530
| |   
| |       Removed StreamingFeatures.*, added v_array.h
| |   
| |   D	src/libshogun/features/StreamingFeatures.cpp
| |   D	src/libshogun/features/StreamingFeatures.h
| |   A	src/libshogun/lib/v_array.h
| |   
| * commit 5b0451c3c4f9f32718960c7a2d26cab31e02dd52
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 11:14:32 2011 +0200
| | 
| |     added copyright notice
| | 
| | M	src/libshogun/features/StringFeatures.h
| |   
| * commit c963b8f8baa99d01c8eed6b68b15a409e700967b
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 10:54:34 2011 +0200
| | 
| |     adapted new class name of ParameterCombination
| | 
| | M	examples/undocumented/libshogun/modelselection_grid_search.cpp
| |   
| * commit e230f0a3098f112911069de44570d304485acc32
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 10:50:30 2011 +0200
| | 
| |     added Subset variable to init
| | 
| | M	src/libshogun/features/Features.cpp
| | M	src/libshogun/features/Labels.cpp
| |   
| * commit 08d6ce144f4717a08da1dacd94365e629c8c76a6
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 10:50:00 2011 +0200
| | 
| |     added serialization support
| |     adapted new class name of ParameterCombination
| | 
| | M	src/libshogun/evaluation/CrossValidation.cpp
| | M	src/libshogun/evaluation/CrossValidation.h
| |   
| * commit f466637f0674e8a15ace5a71ecc08f990683777f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 10:49:38 2011 +0200
| | 
| |     does not inherit from Subset anymore, but has a variable of that type
| | 
| | M	src/libshogun/features/Features.h
| |   
| * commit ca3e0e9a6c164aa1e7cdd45bee2d9d5041277252
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 10:49:16 2011 +0200
| | 
| |     does not inherit from Subset anymore, but has a variable of that type
| | 
| | M	src/libshogun/features/Labels.h
| |   
| * commit 2be3c8cd140421fdf3f944c3c23514ac7083cae2
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 10:47:18 2011 +0200
| | 
| |     does not inherit from Subset anymore but has a variable of that type
| | 
| | M	src/libshogun/features/StringFeatures.h
| |   
| * commit 8a206d2b7dda81d44186b73d1a64e1827a5d8486
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 10:46:56 2011 +0200
| | 
| |     now inherits from CSGObject
| |     should not be extended anymore
| |     added serialization support
| | 
| | M	src/libshogun/features/Subset.cpp
| | M	src/libshogun/features/Subset.h
| |   
| * commit e64602f034922d24d97010ab15cf4d46faf5fe87
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 10:45:08 2011 +0200
| | 
| |     adapted class name of ParameterCombination
| | 
| | M	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | M	src/libshogun/modelselection/GridSearchModelSelection.h
| |   
| * commit 184d0ee773561db096e0d2df86c6d0d00bce42be
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 10:44:53 2011 +0200
| | 
| |     added serialization support
| |     adapted class name of ParameterCombination
| | 
| | M	src/libshogun/modelselection/ModelSelection.cpp
| | M	src/libshogun/modelselection/ModelSelection.h
| |   
| * commit 5484f41bccf5535f9d40857cde7254cc5315144e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 10:44:28 2011 +0200
| | 
| |     added serialization support
| |     adapted class name of ParameterCombination
| | 
| | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | M	src/libshogun/modelselection/ModelSelectionParameters.h
| |   
| * commit 04544287899538b06de78ee41d156860612ab915
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 10:43:57 2011 +0200
| | 
| |     removed inheritance from CSGObject
| | 
| | M	src/libshogun/modelselection/ParameterCombination.cpp
| | M	src/libshogun/modelselection/ParameterCombination.h
| |     
| *   commit acc8a031d5a323178090e98a6bb29a70b15c3808
| |\  Merge: de36363 6ce47b0
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/|   Date:   Fri Jun 17 10:23:37 2011 +0200
| |   
| |       Merge remote branch 'upstream/master'
| |   
* | commit 6ce47b047fdcc0c3606c932a526992528bb9385b
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Fri Jun 17 04:35:42 2011 +0530
| | 
| |     More copyright changes to IOBuffer.
| | 
| | M	src/libshogun/lib/IOBuffer.cpp
| | M	src/libshogun/lib/IOBuffer.h
| |   
* | commit e14b29ff67874762f7cce833fb3bb79b03811004
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Fri Jun 17 04:21:16 2011 +0530
| | 
| |     Changed copyrights in IOBuffer and made it derive from CSGObject.
| | 
| | M	src/libshogun/lib/IOBuffer.cpp
| | M	src/libshogun/lib/IOBuffer.h
| |     
* |   commit fe6ab74e0d43f01c460aee0326b5b5b93c10fea6
|\ \  Merge: 86542c4 40c6576
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Fri Jun 17 04:16:18 2011 +0530
| | | 
| | |     Merge remote-tracking branch 'upstream/master' into streaming
| | |    
| * | commit 40c6576dc988f4ec10581722dbafdd090911c52a
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jun 17 00:26:33 2011 +0200
| | | 
| | |     add missing functions to Distance/Kernel/LinearMachine such that
| | |     all examples run through at least. Minor fixes to example files.
| | | 
| | | M	examples/undocumented/java_modular/classifier_lda_modular.java
| | | M	examples/undocumented/java_modular/classifier_liblinear_modular.java
| | | M	src/libshogun/distance/Distance.cpp
| | | M	src/libshogun/distance/Distance.h
| | | M	src/libshogun/kernel/Kernel.cpp
| | | M	src/libshogun/kernel/Kernel.h
| | | M	src/libshogun/machine/LinearMachine.h
| | |    
| * | commit 5c71d645a57e442ae5998013ef901d41c3140bd5
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jun 17 00:25:38 2011 +0200
| | | 
| | |     polish minimal example to use jblas' signum / mean etc and simplify code slightly
| | | 
| | | M	examples/undocumented/java_modular/classifier_libsvm_minimal_modular.java
| | |    
| * | commit 38fe3d6f2d4d8c1d638e4cbdc71eba7bdef9ed86
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Jun 16 21:14:20 2011 +0800
| | | 
| | |     make path relative to the java_modular examples dir and output the out_labels
| | | 
| | | M	examples/undocumented/java_modular/classifier_averaged_perceptron_modular.java
| | | M	examples/undocumented/java_modular/classifier_gaussiannaivebayes_modular.java
| | | M	examples/undocumented/java_modular/classifier_gmnpsvm_modular.java
| | | M	examples/undocumented/java_modular/classifier_gpbtsvm_modular.java
| | | M	examples/undocumented/java_modular/classifier_larank_modular.java
| | | M	examples/undocumented/java_modular/classifier_lda_modular.java
| | | M	examples/undocumented/java_modular/classifier_liblinear_modular.java
| | |    
| * | commit a56ddf38db032a7ff72ddc2e82bb76f5b98004a9
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Jun 16 21:10:01 2011 +0800
| | | 
| | |     rename to be classifier_libsvm_minimal_modular.java
| | | 
| | | D	examples/undocumented/java_modular/ClassifierLibsvmMinimalModular.java
| | | A	examples/undocumented/java_modular/classifier_libsvm_minimal_modular.java
| | |    
| * | commit 695bef7826455cdc88159f34f138dfcbf371261c
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Jun 16 21:05:10 2011 +0800
| | | 
| | |     add classifier_libsvm_modular.java example
| | | 
| | | A	examples/undocumented/java_modular/classifier_libsvm_modular.java
| | |    
| * | commit 9c71480ad7523cf7daff37ea76fc88f450138951
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Jun 16 21:01:49 2011 +0800
| | | 
| | |     classifier_libsvmmulticlass_modular
| | | 
| | | A	examples/undocumented/java_modular/classifier_libsvmmulticlass_modular.java
| | |    
| * | commit c2f06d4b67327ed70fdd6326f95ce8b0d7f618d3
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Jun 16 20:55:17 2011 +0800
| | | 
| | |     add  classifier_libsvmoneclass_modular example
| | | 
| | | A	examples/undocumented/java_modular/classifier_libsvmoneclass_modular.java
| | |    
| * | commit 59a44097f2a5a4eb0f88a4668d33df683f905db5
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Jun 16 20:53:38 2011 +0800
| | | 
| | |     add classifier_mpdsvm_modular.java example
| | | 
| | | A	examples/undocumented/java_modular/classifier_mpdsvm_modular.java
| | |    
| * | commit 36884aa3fa2b428b75fe7fcf42f28bc0340c33a8
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Jun 16 20:51:40 2011 +0800
| | | 
| | |     add  classifier_perceptron_modular.java example
| | | 
| | | A	examples/undocumented/java_modular/classifier_perceptron_modular.java
| | |    
| * | commit 2089d24a050d63a8c6a06685e06ff3b9bc3990c7
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Jun 16 20:46:44 2011 +0800
| | | 
| | |     fix check.sh
| | | 
| | | M	examples/undocumented/java_modular/check.sh
| | |    
| * | commit 83871aa981b40d547797af05514a048b178e2fb0
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Jun 16 17:05:49 2011 +0800
| | | 
| | |     fix check.sh
| | | 
| | | M	examples/undocumented/java_modular/check.sh
| | |    
| * | commit e38049601b5a5509af8f5209d851761dee47a856
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Jun 16 16:50:37 2011 +0800
| | | 
| | |     add check.sh to check java examples
| | | 
| | | A	examples/undocumented/java_modular/check.sh
| | |    
* | | commit 86542c48d4268aaa4d063d415539e7f26dd8e707
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Tue Jun 14 12:08:34 2011 +0530
| | | 
| | |     Changed include path to reflect new parser file.
| | | 
| | | M	src/libshogun/features/StreamingFeatures.h
| | |      
* | |   commit e9f10d3b0642fe587dc6cdd85181a133e6d444e9
|\ \ \  Merge: 520f61c 80305b6
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Tue Jun 14 12:07:15 2011 +0530
| | | | 
| | | |     Merge remote-tracking branch 'upstream/master' into streaming
| | | |     
* | | | commit 520f61c6af76b93f5da3dd3c827c845e359c3ea4
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Tue Jun 14 01:38:43 2011 +0530
| | | | 
| | | |     Removed parser.h, buffer.h files.
| | | | 
| | | | D	src/libshogun/lib/buffer.h
| | | | D	src/libshogun/lib/parser.h
| | | |     
* | | | commit e1253956b97421e6ffcb23ee587550a902be1bd7
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Tue Jun 14 01:37:52 2011 +0530
| | | | 
| | | |     Templated the examples ring and the parser, renamed the files properly. Removed original parser.cpp and buffer.cpp
| | | | 
| | | | A	src/libshogun/lib/InputParser.h
| | | | A	src/libshogun/lib/ParseBuffer.h
| | | | D	src/libshogun/lib/buffer.cpp
| | | | M	src/libshogun/lib/buffer.h
| | | | D	src/libshogun/lib/parser.cpp
| | | | M	src/libshogun/lib/parser.h
| | | |     
* | | | commit 04eb2a5142aef0298307a0866f0aa35321d3af07
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Mon Jun 13 19:53:38 2011 +0530
| | | | 
| | | |     Rewrite of some class names for IOBuffer in AsciiFile.h
| | | | 
| | | | M	src/libshogun/lib/AsciiFile.h
| | | |     
* | | | commit fa564bd3c3720ee9e22c14253d5e18f6ae00a667
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Mon Jun 13 19:50:02 2011 +0530
| | | | 
| | | |     Initial port of VW's io buffer class for shogun.
| | | | 
| | | | M	src/libshogun/lib/AsciiFile.h
| | | | A	src/libshogun/lib/IOBuffer.cpp
| | | | A	src/libshogun/lib/IOBuffer.h
| | | |       
| | | *   commit de3636378303d6bab380519b1beca0813a60d63d
| | | |\  Merge: 5004262 301896d
| | | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |/|   Date:   Thu Jun 16 21:51:10 2011 +0200
| | | |   
| | | |       Merge remote branch 'upstream/master'
| | | |     
| | * | commit 301896d052cde109b5606a04d3076355adeab136
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jun 16 00:16:56 2011 +0200
| | | | 
| | | |     fix compilation error in python modular
| | | | 
| | | | M	src/modular/Regression.i
| | | |     
| | * | commit a6e3ec9765d384b598d5d1ec885542a7eee0e0fc
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jun 16 00:16:28 2011 +0200
| | | | 
| | | |     make path relative to the java_modular examples dir
| | | | 
| | | | M	examples/undocumented/java_modular/classifier_knn_modular.java
| | | |     
| | * | commit 218bd896f3aad4feee5f69bedcd20243ca9a6c1f
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jun 16 00:15:53 2011 +0200
| | | | 
| | | |     add support for SGMatrix in constructor
| | | | 
| | | | M	src/libshogun/features/SimpleFeatures.h
| | | |     
| | | * commit 5004262c1456d4d37729e9a362d498a3bd577290
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jun 15 18:58:20 2011 +0200
| | | | 
| | | |     added example for a simple grid-search
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | A	examples/undocumented/libshogun/modelselection_grid_search.cpp
| | | |     
| | | * commit 5999e11d491151ac4b6f529c877bfb28f9b1d87b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jun 15 18:57:56 2011 +0200
| | | | 
| | | |     removed debug prints
| | | | 
| | | | M	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | | |     
| | | * commit d8ed36688ab3d10a7bf2e3ccc526f94e5ad6a3c0
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jun 15 18:52:15 2011 +0200
| | | | 
| | | |     added getter for learning machine
| | | | 
| | | | M	src/libshogun/evaluation/CrossValidation.h
| | | |     
| | | * commit 5ec8c5a8f96599f608a41c9210fa0a03655c01ac
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jun 15 18:52:03 2011 +0200
| | | | 
| | | |     first model selection implementation: grid search
| | | | 
| | | | A	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | | | A	src/libshogun/modelselection/GridSearchModelSelection.h
| | | |     
| | | * commit ace445406c1ed2f9c025c06aae9ee6db20200e24
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jun 15 18:51:47 2011 +0200
| | | | 
| | | |     addded result variable to select model method
| | | | 
| | | | M	src/libshogun/modelselection/ModelSelection.cpp
| | | | M	src/libshogun/modelselection/ModelSelection.h
| | | |     
| | | * commit e84247a949a35b5ac00a4fcab996f8a19a4dd311
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jun 15 18:51:20 2011 +0200
| | | | 
| | | |     added variable to determine if destroy is called in destructor
| | | | 
| | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | |     
| | | * commit 7994153620c6b34f4de314d45d80b4c03628aff1
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jun 15 18:50:52 2011 +0200
| | | | 
| | | |     decided to not do this
| | | | 
| | | | D	src/libshogun/modelselection/ModelSelectionParametersDiscreteNode.cpp
| | | | D	src/libshogun/modelselection/ModelSelectionParametersDiscreteNode.h
| | | | D	src/libshogun/modelselection/ModelSelectionParametersNameNode.cpp
| | | | D	src/libshogun/modelselection/ModelSelectionParametersNameNode.h
| | | | D	src/libshogun/modelselection/ModelSelectionParametersObjectNode.cpp
| | | | D	src/libshogun/modelselection/ModelSelectionParametersObjectNode.h
| | | | D	src/libshogun/modelselection/ModelSelectionParametersRootNode.cpp
| | | | D	src/libshogun/modelselection/ModelSelectionParametersRootNode.h
| | | | D	src/libshogun/modelselection/ModelSelectionParametersTree.cpp
| | | | D	src/libshogun/modelselection/ModelSelectionParametersTree.h
| | | |       
| | | *   commit 59ad31f5bdf2188a5d4365fea7cdaa4266f3e226
| | | |\  Merge: 6c64b2f 0d30ea3
| | | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |/|   Date:   Wed Jun 15 13:33:16 2011 +0200
| | | |   
| | | |       Merge remote branch 'upstream/master'
| | | |     
| | * | commit 0d30ea34ec2eea670d9baa90281206db325fecd9
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Jun 15 10:49:16 2011 +0200
| | | | 
| | | |     fix knn example and %import distance to get knn to work
| | | | 
| | | | M	examples/undocumented/java_modular/classifier_knn_modular.java
| | | | M	src/modular/Classifier.i
| | | |     
| | * | commit 22ccbc69b8ef7c4f974a6b4d4fb368471397a261
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Wed Jun 15 13:39:12 2011 +0800
| | | | 
| | | |     add example file classifier_liblinear_modular.java
| | | | 
| | | | A	examples/undocumented/java_modular/classifier_liblinear_modular.java
| | | |     
| | * | commit acb5a29e7cbb9a6add445f5b8adcf6f6730f81d0
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Wed Jun 15 13:25:23 2011 +0800
| | | | 
| | | |     add example file classifier_lda_modular.java
| | | | 
| | | | A	examples/undocumented/java_modular/classifier_lda_modular.java
| | | |     
| | * | commit 9a035eb19eb73dc6f2bc00f003ea91b7b9f389c2
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Wed Jun 15 13:03:01 2011 +0800
| | | | 
| | | |     add example file classifier_larank_modular.java
| | | | 
| | | | A	examples/undocumented/java_modular/classifier_larank_modular.java
| | | |     
| | * | commit cdb8aa94a1c9a9d78c97e14381b45b1091a1ae09
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Wed Jun 15 12:56:15 2011 +0800
| | | | 
| | | |     add example file classifier_knn_modular.java
| | | | 
| | | | A	examples/undocumented/java_modular/classifier_knn_modular.java
| | | |     
| | * | commit e9b4916c7d8435c03f5f2b6c8f6d711f4e66717f
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Wed Jun 15 12:24:53 2011 +0800
| | | | 
| | | |     add example file classifier_gpbtsvm_modular.java
| | | | 
| | | | A	examples/undocumented/java_modular/classifier_gpbtsvm_modular.java
| | | |     
| | * | commit 5e9d9cd9ac246fc00e93ce53201b6f4abeac0010
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Wed Jun 15 11:25:03 2011 +0800
| | | | 
| | | |     add example file classifier_gmnpsvm_modular.java
| | | | 
| | | | A	examples/undocumented/java_modular/classifier_gmnpsvm_modular.java
| | | |     
| | * | commit 191b17d269c8f563d6634ef241a3d81a162315fd
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Wed Jun 15 11:13:36 2011 +0800
| | | | 
| | | |     add example file classifier_gaussiannaivebayes_modular.java file
| | | | 
| | | | A	examples/undocumented/java_modular/classifier_gaussiannaivebayes_modular.java
| | | |     
| | * | commit 4db34050c9ac20962e9bba84a30b9d1df550157c
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Wed Jun 15 10:35:24 2011 +0800
| | | | 
| | | |     add java help file Load.java and example classifier_averaged_perceptron_modular.java
| | | | 
| | | | A	examples/undocumented/java_modular/Load.java
| | | | A	examples/undocumented/java_modular/classifier_averaged_perceptron_modular.java
| | | |     
| | * | commit aae10fb9f60f7426f28316e026dd2c611cee15fc
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Jun 15 00:14:51 2011 +0200
| | | | 
| | | |     make init() a private function
| | | | 
| | | | M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| | | | M	src/libshogun/classifier/svm/MultiClassSVM.h
| | | |     
| | * | commit 125418559cb3a058ad2c5dcbf6ea580ca4338542
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Jun 15 00:14:25 2011 +0200
| | | | 
| | | |     fix numpy error in evaluation examples
| | | | 
| | | | M	examples/undocumented/python_modular/classifier_gmnpsvm_modular.py
| | | | M	examples/undocumented/python_modular/evaluation_contingencytableevaluation_modular.py
| | | | M	examples/undocumented/python_modular/evaluation_meansquarederror_modular.py
| | | | M	examples/undocumented/python_modular/evaluation_multiclassaccuracy_modular.py
| | | | M	examples/undocumented/python_modular/evaluation_prcevaluation_modular.py
| | | | M	examples/undocumented/python_modular/evaluation_rocevaluation_modular.py
| | | |     
| | * | commit b23144d9b921dcdad463cb77b7904529d09982c0
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jun 14 23:24:21 2011 +0200
| | | | 
| | | |     Transition: get_labels() now no longer returns a copy of the labels but
| | | |     a ptr - adjust algorithms accordingly.
| | | | 
| | | | M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| | | | M	src/libshogun/classifier/svm/CPLEXSVM.cpp
| | | | M	src/libshogun/classifier/svm/SVMLin.cpp
| | | | M	src/libshogun/classifier/svm/SVMOcas.cpp
| | | | M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| | | | M	src/libshogun/evaluation/PRCEvaluation.cpp
| | | | M	src/libshogun/evaluation/ROCEvaluation.cpp
| | | | M	src/libshogun/regression/KRR.cpp
| | | |     
| | * | commit 2d0fc5e60cbe4c425b5e25fbcf8d45ee4e5ef908
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Tue Jun 14 23:04:59 2011 +0200
| | |   
| | |       don't include SVM's in regression modules but merely %import Classifiers
| | |   
| | |   M	src/modular/Regression.i
| | |    
| | * commit 6c64b2f52e8f7a0ebd325e371629290dff09be8f
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 17:57:54 2011 +0200
| | | 
| | |     introduced new classes for holding model selection parameters
| | | 
| | | A	src/libshogun/modelselection/ModelSelectionParametersDiscreteNode.cpp
| | | A	src/libshogun/modelselection/ModelSelectionParametersDiscreteNode.h
| | | A	src/libshogun/modelselection/ModelSelectionParametersNameNode.cpp
| | | A	src/libshogun/modelselection/ModelSelectionParametersNameNode.h
| | | A	src/libshogun/modelselection/ModelSelectionParametersObjectNode.cpp
| | | A	src/libshogun/modelselection/ModelSelectionParametersObjectNode.h
| | | A	src/libshogun/modelselection/ModelSelectionParametersRootNode.cpp
| | | A	src/libshogun/modelselection/ModelSelectionParametersRootNode.h
| | | A	src/libshogun/modelselection/ModelSelectionParametersTree.cpp
| | | A	src/libshogun/modelselection/ModelSelectionParametersTree.h
| | |    
| | * commit 287dbdaf481b5f3e21aa967ce35e534decfa06cc
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 16:27:10 2011 +0200
| | | 
| | |     added setter to set values vector directly wihtout set_range
| | | 
| | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | |    
| | * commit aa47f11af6fc72d576825f9fae6f50db7b469071
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 16:24:30 2011 +0200
| | | 
| | |     added type check for range
| | | 
| | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | |    
| | * commit a33216142a8cdff68841d78b2d90e10634b6ccf5
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 16:15:59 2011 +0200
| | | 
| | |     put a member variable from heap to stack
| | | 
| | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | |    
| | * commit d77ee5f31d9c378ee4f6f3276e9fe873a331b1cc
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 15:09:25 2011 +0200
| | | 
| | |     -made class abstract
| | |     -now only depends on cross-validation and model selection parameters
| | | 
| | | M	src/libshogun/modelselection/ModelSelection.cpp
| | | M	src/libshogun/modelselection/ModelSelection.h
| | |    
| | * commit fd7a06144a051fcb0b96f75d3d07b011d7c8ba53
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 14:55:18 2011 +0200
| | | 
| | |     corrected spelling mistakes
| | | 
| | | M	src/libshogun/evaluation/CrossValidation.h
| | |    
| | * commit 81d8dcae43b9a52b3a7dedc8ed1904998041f40f
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 14:49:12 2011 +0200
| | | 
| | |     fixed a memory error
| | | 
| | | M	src/libshogun/evaluation/CrossValidation.cpp
| | |    
| | * commit b1b77d6e499c07a7fd6ea87f29b42523978c5342
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 14:39:34 2011 +0200
| | | 
| | |     -subsets are now backuped and restored
| | |     -label subsets are now used
| | | 
| | | M	src/libshogun/evaluation/CrossValidation.cpp
| | |    
| | * commit 5c6fb79c6999b58bb4084e407e8e1450b2c43cda
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 14:39:02 2011 +0200
| | | 
| | |     added subset support to this class
| | | 
| | | M	src/libshogun/features/Labels.cpp
| | | M	src/libshogun/features/Labels.h
| | |    
| | * commit ce8ad97ec821a254a7447210be713649dd50a6e7
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 14:38:46 2011 +0200
| | | 
| | |     added parameter registration of subset indices
| | | 
| | | M	src/libshogun/features/Features.cpp
| | |    
| | * commit 5066c68d25f05d2fbd1ad44eb88187ab8840db05
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 14:38:27 2011 +0200
| | | 
| | |     removed copy/paste error, this has to go into CFeatures
| | | 
| | | M	src/libshogun/features/StringFeatures.h
| | |    
| | * commit 355a0b37ecd2d0b1dcb1bb1e53c575112a97b3bb
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 14:37:56 2011 +0200
| | | 
| | |     name changes due to new Subset class
| | | 
| | | M	src/libshogun/features/StringFeatures.h
| | |    
| | * commit 8bc8dcf45bbfd15a8199c6d96a7101ce9e50410c
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 14:36:46 2011 +0200
| | | 
| | |     moved subset stuff into newly created Subset class
| | | 
| | | M	src/libshogun/features/Features.cpp
| | | M	src/libshogun/features/Features.h
| | |    
| | * commit 8cdf0f33ee18d06824b953e084a854d62104494d
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 14:36:17 2011 +0200
| | | 
| | |     added class which encapsulates subset support which may be used by different classes
| | | 
| | | A	src/libshogun/features/Subset.cpp
| | | A	src/libshogun/features/Subset.h
| | |      
| | *   commit f091e2fe8387855a42e1c8f7ce7ef503dcbc7bfa
| | |\  Merge: b907677 80305b6
| | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/|   Date:   Tue Jun 14 13:27:52 2011 +0200
| | |   
| | |       Merge remote branch 'upstream/master'
| | |    
| * | commit 80305b6cb9e2578110b4c852b49e41a08e06c5c7
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jun 14 01:46:41 2011 +0200
| | | 
| | |     simplify and fix java examples that now really do work :)
| | | 
| | | M	examples/undocumented/java_modular/ClassifierLibsvmMinimalModular.java
| | | M	examples/undocumented/java_modular/VectorTest.java
| | |    
| * | commit f7acf8aa5b3b42dcc96ea120865e6fe7e3dc2496
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jun 14 01:45:59 2011 +0200
| | | 
| | |     introduce init_shogun_with_defaults (aka printf) to enable output from e.g. java
| | | 
| | | M	src/libshogun/base/init.cpp
| | | M	src/libshogun/base/init.h
| | |    
| * | commit 446cc2f554d3eb9412163d597ca6721cc2f763d4
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jun 14 01:44:14 2011 +0200
| | | 
| | |     Adjust Labels for SGVector
| | |     
| | |     This includes: from now on get_* functions never copy the label vector;
| | |     set_* functions own the memory and delete[] it on destruction
| | | 
| | | M	src/libshogun/features/Labels.cpp
| | | M	src/libshogun/features/Labels.h
| | |      
| * |   commit 97dc4f9aedbc15eed2e14b44277148a62b10a609
| |\ \  Merge: 9552aef 3312df8
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jun 13 23:38:19 2011 +0200
| | | | 
| | | |     Merge branch 'master' of git://github.com/sploving/shogun
| | | |     
| | * | commit 3312df88aca431c29255bd6bfb2799c8da8b8161
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Mon Jun 13 15:01:42 2011 +0800
| | | | 
| | | |     fix ClassifierLibsvmMinimalModular error
| | | | 
| | | | M	examples/undocumented/java_modular/ClassifierLibsvmMinimalModular.java
| | | |     
| | * | commit 8273fa1e3c889ca91b255fbf9c1e91f128f705f4
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Mon Jun 13 13:52:01 2011 +0800
| | | | 
| | | |     fix jblas vector example VectorTest.java
| | | | 
| | | | M	examples/undocumented/java_modular/VectorTest.java
| | | | M	src/java_modular/swig_typemaps.i
| | | |     
| * | | commit 9552aefb877168b1b24da9c31ef2a67ad3bfb029
|/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | |   Date:   Mon Jun 13 23:02:23 2011 +0400
| | |   
| | |       Crucial fixes for drunk-made mistakes in LocallyLinearEmbedding
| | |   
| | |   M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | |    
* | | commit 9ec240ce3a2afe28112e67f5607bffbc88ba5296
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jun 13 11:37:14 2011 +0200
| | | 
| | |     modified example to work with jblas DoubleMatrix
| | | 
| | | M	examples/undocumented/java_modular/ClassifierLibsvmMinimalModular.java
| | |    
* | | commit 78b55387ca94f512e29ca16e05c60b75b4213c87
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Mon Jun 13 11:17:48 2011 +0200
| |   
| |       test if doxygen is installed and only then add the *_doxygen.i files as
| |       deps
| |   
| |   M	src/.generate_link_dependencies.py
| |     
* |   commit 0410dce0aa3c183b91d884a113565ba489255a11
|\ \  Merge: db3ccd1 77ae6f5
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Jun 12 22:02:14 2011 +0200
| | | 
| | |     Merge branch 'mds' of git://github.com/SergeyLisitsyn/shogun
| | |    
| * | commit 77ae6f5f150e39045d21498e9bc9646d60c2a34b
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jun 12 15:09:13 2011 +0400
| | | 
| | |     Added routine for applying to distance
| | | 
| | | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | M	src/libshogun/preprocessor/ClassicMDS.h
| | |    
| * | commit bb8fd50aa433a47321805b4831a413ba68c9e4e5
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jun 12 03:28:45 2011 +0400
| | | 
| | |     Refactored CClassicMDS and CIsomap
| | | 
| | | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | M	src/libshogun/preprocessor/ClassicMDS.h
| | | M	src/libshogun/preprocessor/Isomap.cpp
| | | M	src/libshogun/preprocessor/Isomap.h
| | | M	src/libshogun/preprocessor/Preprocessor.h
| | |      
* | |   commit db3ccd10b069461c78bed8d18e12fb27b63dfa56
|\ \ \  Merge: 28caeff 74a854b
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sun Jun 12 22:01:41 2011 +0200
| | | | 
| | | |     Merge branch 'lle' of git://github.com/SergeyLisitsyn/shogun
| | | |     
| * | | commit 74a854b80e559f5291891c5b390bf250634df36a
| |/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | |   Date:   Sun Jun 12 04:57:35 2011 +0400
| | |   
| | |       Various fixes and beautifications ;) of CLocallyLinearEmbedding
| | |   
| | |   M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | |    
* | | commit 28caeff4c2bd4e9d8bc5fce01e454655ca2e05d7
|/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |   Date:   Sun Jun 12 05:06:45 2011 +0400
| |   
| |       Fixed .gitignore
| |   
| |   M	.gitignore
| |     
* |   commit d761ec2198fa45ec2c52ba42faf873c3066eed90
|\ \  Merge: 24b8f99 5af267d
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sat Jun 11 21:27:20 2011 +0200
| | | 
| | |     Merge branch 'master' of git://github.com/serialhex/shogun
| | |    
| * | commit 5af267d360f899c864a57c77ff86ef0fc3bbf1f7
| | | Author: Justin Patera <serialhex@gmail.com>
| | | Date:   Wed Jun 8 23:45:43 2011 -0400
| | | 
| | |     I FIXED IT!!!  yeah, i was being stupid and not getting the sign of the labels (i built the method to do it and everything!) so yeah, now it works!
| | | 
| | | M	examples/undocumented/ruby_modular/classifier_libsvm_minimal_modular.rb
| | |    
| * | commit 201cf9dabb5b7cb85d15e25004d83026e7676104
| | | Author: Justin Patera <serialhex@gmail.com>
| | | Date:   Wed Jun 8 23:15:48 2011 -0400
| | | 
| | |     another small change... just reducing crud that dosn't need to be there
| | | 
| | | M	examples/undocumented/ruby_modular/classifier_libsvm_minimal_modular.rb
| | |    
| * | commit c3ba4d8234a26c8ed3fdeb71b35091e9ae4eb600
| | | Author: Justin Patera <serialhex@gmail.com>
| | | Date:   Wed Jun 8 23:07:58 2011 -0400
| | | 
| | |     removed the "require 'pry'" line, as it's not needed ('twas usint it for debugging)
| | | 
| | | M	examples/undocumented/ruby_modular/classifier_libsvm_minimal_modular.rb
| | |    
* | | commit 24b8f99388226ed7aa933db2941fee0a0022bec5
|/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |   Date:   Sat Jun 11 00:08:01 2011 +0400
| |   
| |       Added CIsomap
| |   
| |   A	src/libshogun/preprocessor/Isomap.cpp
| |   A	src/libshogun/preprocessor/Isomap.h
| |   M	src/modular/Preprocessor.i
| |   M	src/modular/Preprocessor_includes.i
| |   
| * commit b907677c675f72afa707aa609b0e0573bc8f99a9
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jun 14 13:27:01 2011 +0200
| | 
| |     fixed memory leak
| | 
| | M	src/libshogun/evaluation/CrossValidation.cpp
| |   
| * commit 8d358c98870ed39329471577c5f959bc9b85292e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Jun 12 23:01:51 2011 +0200
| | 
| |     removed unnecessary NULL check
| | 
| | M	src/libshogun/features/Features.cpp
| |   
| * commit ffd6fa002819193aa8173cb64cc1c12a56eea9b7
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Jun 12 22:21:21 2011 +0200
| | 
| |     -added features as parameter
| |     -finished evaluate_one_run method
| | 
| | M	src/libshogun/evaluation/CrossValidation.cpp
| | M	src/libshogun/evaluation/CrossValidation.h
| |   
| * commit b48dbb58a23a4b7a89f4ceadf724d69b4b4eba57
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Jun 11 17:05:53 2011 +0200
| | 
| |     moved some stuff to cross-validation class leaving this one nearly empty
| | 
| | M	src/libshogun/modelselection/ModelSelection.cpp
| | M	src/libshogun/modelselection/ModelSelection.h
| |   
| * commit 69d8d2dc15767e7db19bcf00ec201a6fe71c8074
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Jun 11 17:05:17 2011 +0200
| | 
| |     class not abstract anymore and provides an example implementation of evaluate_one_run which may be used for accuracy and AUC for example
| | 
| | M	src/libshogun/evaluation/CrossValidation.cpp
| | M	src/libshogun/evaluation/CrossValidation.h
| |   
| * commit 8493bcef39a4b25b1b10af0612def8232027536d
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Jun 11 16:47:32 2011 +0200
| | 
| |     -little interface changes
| |     -method to generate set of inverse indices
| | 
| | M	src/libshogun/evaluation/SplittingStrategy.cpp
| | M	src/libshogun/evaluation/SplittingStrategy.h
| |   
| * commit 7f5736313a04c0f64d9d600338a0a40a240b40d9
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Jun 11 16:29:58 2011 +0200
| | 
| |     added comment
| | 
| | M	src/libshogun/evaluation/SplittingStrategy.h
| |   
| * commit d693b122f141bd0fc11d35878db0d6a26a4614cf
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Jun 11 16:27:34 2011 +0200
| | 
| |     added getter for number of subsets
| | 
| | M	src/libshogun/evaluation/SplittingStrategy.h
| |   
| * commit 3a0887194e8378f085e38ba6469c66403188d6b0
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Jun 11 16:17:32 2011 +0200
| | 
| |     class rename
| | 
| | M	src/libshogun/evaluation/StratifiedCrossValidationSplitting.cpp
| |   
| * commit 73dfe7a816942ed27b1b91fe0376c375a3afec71
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Jun 11 16:17:17 2011 +0200
| | 
| |     initial implementation of cross-validation class
| | 
| | A	src/libshogun/evaluation/CrossValidation.cpp
| |   
| * commit 2f0a6b3cd529de7040254f89ae893d0bb6eeed99
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Jun 11 16:16:59 2011 +0200
| | 
| |     small correction
| | 
| | M	src/libshogun/evaluation/CrossValidation.h
| |   
| * commit 1a28a737d8f03c13712b314499ad0bbc33492ca6
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Jun 11 16:06:07 2011 +0200
| | 
| |     first version of cross-validation interface
| | 
| | A	src/libshogun/evaluation/CrossValidation.h
| |   
| * commit 0bddb43e462299f6e9536b4f649dcadff114a47e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Jun 11 15:15:55 2011 +0200
| | 
| |     added optimisation direction to CEvaluation
| | 
| | M	src/libshogun/evaluation/ContingencyTableEvaluation.cpp
| | M	src/libshogun/evaluation/ContingencyTableEvaluation.h
| | M	src/libshogun/evaluation/Evaluation.h
| | M	src/libshogun/evaluation/MeanSquaredError.h
| | M	src/libshogun/evaluation/MulticlassAccuracy.h
| | M	src/libshogun/evaluation/PRCEvaluation.h
| | M	src/libshogun/evaluation/ROCEvaluation.h
| |   
| * commit 6268b95443af9352168dd5a441386ab0c256047f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 10 18:26:39 2011 +0200
| | 
| |     initial (not yet working) draft of model selection class
| | 
| | A	src/libshogun/modelselection/ModelSelection.cpp
| | A	src/libshogun/modelselection/ModelSelection.h
| |   
| * commit dcd89701c24a51537aabf5ac529a8b38ae1904ae
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 10 18:26:17 2011 +0200
| | 
| |     class rename
| | 
| | M	src/libshogun/evaluation/StratifiedCrossValidationSplitting.cpp
| | M	src/libshogun/evaluation/StratifiedCrossValidationSplitting.h
| |   
| * commit 3b33770781b5561aa8495f7afa2a232ea56d6525
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 10 18:26:03 2011 +0200
| | 
| |     rename
| | 
| | D	src/libshogun/evaluation/StratifiedCrossValidation.cpp
| | D	src/libshogun/evaluation/StratifiedCrossValidation.h
| | A	src/libshogun/evaluation/StratifiedCrossValidationSplitting.cpp
| | A	src/libshogun/evaluation/StratifiedCrossValidationSplitting.h
| |   
| * commit 51fc467628fe036c574c886c07785a16ea4fe404
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 9 11:34:56 2011 +0200
| | 
| |     removed a comment
| | 
| | M	src/libshogun/evaluation/StratifiedCrossValidation.h
| |   
| * commit 57d01c2fe8dacd5484ecf59323962b59f4b7c4f3
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Thu Jun 9 11:34:47 2011 +0200
|   
|       added default constructor
|   
|   M	src/libshogun/evaluation/SplittingStrategy.cpp
|   M	src/libshogun/evaluation/SplittingStrategy.h
|    
*   commit dfd680418931e9c0528f45390b149b22f1ca021d
|\  Merge: 0a9ffa2 42ea1d3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jun 9 00:53:41 2011 +0200
| | 
| |     Merge branch 'master' of git://github.com/serialhex/shogun
| |   
| * commit 42ea1d3b3dc2dd24da5d6e15c56b179f7493eec7
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Wed Jun 8 18:40:30 2011 -0400
| | 
| |     removed simple ruby test
| | 
| | D	testsuite/ruby_modular/test_libs.rb
| | D	testsuite/ruby_modular/test_mod.rb
| |   
| * commit 5fbcb404735061f7eede1dd07a70b043110a2b43
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Wed Jun 8 18:38:16 2011 -0400
| | 
| |     added ruby_modular libSVM example... needs to be clean & probably fixed...
| | 
| | A	examples/undocumented/ruby_modular/classifier_libsvm_minimal_modular.rb
| |   
| * commit baba154394b3e9a926ee4a5b5a8a966f0df0d246
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Tue Jun 7 14:58:15 2011 -0400
| | 
| |     changed test_libs.rb to use test_mod.rb so i can do cool "must 'do something awesome' do ... end" type testing.
| | 
| | M	testsuite/ruby_modular/test_libs.rb
| | A	testsuite/ruby_modular/test_mod.rb
| |   
| * commit 1153eb7820372ece4dc110c6ec408f6b522b9981
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Tue Jun 7 09:34:04 2011 -0400
| | 
| |     added a test for loading the modules in ruby.  there is some error about an invalid name for a constant which should be fixed, but OTT, it works fine
| | 
| | A	testsuite/ruby_modular/test_libs.rb
| |   
* | commit 0a9ffa2e16b9c22ed1a424c42dae0bbb11a063f8
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jun 9 00:53:03 2011 +0200
| | 
| |     Add the *_doxygen.i files to the modular modules build-deps
| | 
| | M	src/.generate_link_dependencies.py
| |     
* |   commit 5c3d0b9f32cc22a54ac54cd23c4ebb814366d7b2
|\ \  Merge: 95b4248 c8e2553
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jun 8 23:31:30 2011 +0200
| | | 
| | |     Merge branch 'streaming' of git://github.com/frx/shogun
| | |    
| * | commit c8e2553c4e3928fa976f900368b71e484a1e2553
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Thu Jun 9 01:34:55 2011 +0530
| | | 
| | |     Typo fix.
| | | 
| | | M	src/libshogun/lib/AsciiFile.cpp
| | |    
| * | commit 1a80db6f361f2ffbb463bc5ffacc8c4d0084340a
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Thu Jun 9 01:31:33 2011 +0530
| | | 
| | |     Fixed file seeking in getline()
| | | 
| | | M	src/libshogun/lib/AsciiFile.cpp
| | |      
* | |   commit 95b4248265e5290610bc6d2ba7ec5181229030a8
|\ \ \  Merge: 2520983 9dbe4c3
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| |   Date:   Wed Jun 8 23:29:18 2011 +0200
| | |   
| | |       Merge branch 'master' of git://github.com/karlnapf/shogun
| | |    
| * | commit 9dbe4c37aa78d310c89d17d347fac0fba59f8bde
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 8 20:57:19 2011 +0200
| | | 
| | |     Initial version of an implementation of a splitting scheme
| | | 
| | | A	src/libshogun/evaluation/StratifiedCrossValidation.cpp
| | | A	src/libshogun/evaluation/StratifiedCrossValidation.h
| | |    
| * | commit 531dbe65a5a5ddb2e91381b870aec27ee04904b7
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 8 20:56:56 2011 +0200
| | | 
| | |     Initial version of abstract base class for different splitting schemes
| | | 
| | | A	src/libshogun/evaluation/SplittingStrategy.cpp
| | | A	src/libshogun/evaluation/SplittingStrategy.h
| | |    
| * | commit a86147bc204a07e4249fd679618ee173639f3208
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 8 20:56:21 2011 +0200
| | | 
| | |     added shuffle method
| | | 
| | | M	src/libshogun/base/DynArray.h
| | |    
* | | commit 2520983c4fa16ee28f067d4c03631438bcf2c01f
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Jun 8 19:21:03 2011 +0400
| | | 
| | |     Cleaned and renamed LLE to LocallyLinearEmbedding
| | | 
| | | D	src/libshogun/preprocessor/LLE.cpp
| | | D	src/libshogun/preprocessor/LLE.h
| | | A	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | | A	src/libshogun/preprocessor/LocallyLinearEmbedding.h
| | | M	src/libshogun/preprocessor/Preprocessor.h
| | | D	src/modular/PreProc.i
| | |    
* | | commit d6a755c397737074a1e1ae4304c50b7b158058ea
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Jun 8 19:13:27 2011 +0400
| | | 
| | |     Cleaning for LLE
| | | 
| | | M	src/libshogun/preprocessor/LLE.cpp
| | | M	src/libshogun/preprocessor/LLE.h
| | |    
* | | commit d6b435129b76766fae02a4279d61134db676abcd
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Fri Jun 3 01:47:28 2011 +0400
| | | 
| | |     Some cleaning of CLLE
| | | 
| | | M	src/libshogun/preprocessor/LLE.cpp
| | | M	src/libshogun/preprocessor/LLE.h
| | |    
* | | commit 0fe0c3a9410b0b0aeff154da37af0790e9cee83e
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon May 30 18:25:58 2011 +0400
| | | 
| | |     Moved routines into apply* function
| | | 
| | | M	src/libshogun/preprocessor/LLE.cpp
| | | M	src/libshogun/preprocessor/LLE.h
| | |    
* | | commit f3cae6ba885e7b60621fa218d42471b37fca2348
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon May 30 18:25:19 2011 +0400
| | | 
| | |     Re-added LLE to modular interface
| | | 
| | | D	src/libshogun/preproc/LLE.cpp
| | | D	src/libshogun/preproc/LLE.h
| | | A	src/libshogun/preprocessor/LLE.cpp
| | | A	src/libshogun/preprocessor/LLE.h
| | | M	src/modular/Preprocessor.i
| | |    
* | | commit cf4b35c0d611cd28bac3a890a9f7cb96689a89d8
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun May 29 16:48:00 2011 +0400
| | | 
| | |     Merged
| | | 
| | | M	src/modular/Preprocessor.i
| | | M	src/modular/Preprocessor_includes.i
| | |    
* | | commit c933add66080f8e3eb44eaf7ca5c8c98804e3d69
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun May 29 14:52:21 2011 +0400
| | | 
| | |     Some fixes for LLE
| | | 
| | | M	src/libshogun/preproc/LLE.cpp
| | | M	src/libshogun/preproc/LLE.h
| | |    
* | | commit 6e699a8c8ab393e8a0c7221a7392e3a0fae497e1
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat May 28 17:20:37 2011 +0400
| | | 
| | |     Fixed some routines in LLE
| | | 
| | | M	src/libshogun/preproc/LLE.cpp
| | | M	src/libshogun/preproc/LLE.h
| | |    
* | | commit ea1506db0a061e78b4b81a131e52b724cb9638a6
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat May 14 23:49:53 2011 +0400
| | | 
| | |     Cleaned LLE
| | | 
| | | M	src/libshogun/preproc/LLE.cpp
| | |    
* | | commit 8bb2582014744c5cb675d5a92cfc8392bfa440be
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat May 14 00:47:00 2011 +0400
| | | 
| | |     Added eigenproblem routines to LLE
| | | 
| | | M	src/libshogun/preproc/LLE.cpp
| | |    
* | | commit 3cde6297265e13cd59dcf9f5015d4b3ae6ba1703
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed May 11 03:29:03 2011 +0400
| | | 
| | |     Added weight calculation routines to CLLE
| | | 
| | | M	src/libshogun/preproc/LLE.cpp
| | | M	src/libshogun/preproc/LLE.h
| | |    
* | | commit 5e1b6b494d46b7f3010fc16b722db39c3c5a5f97
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue May 10 01:33:21 2011 +0400
| | | 
| | |     Some more addition to draft of CLLE
| | | 
| | | M	src/libshogun/preproc/LLE.cpp
| | |    
* | | commit 258b48878485e3763506611bd11a79e22cedc54b
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat May 7 19:22:13 2011 +0400
| | | 
| | |     Added some routines to draft of CLLE
| | | 
| | | M	src/libshogun/preproc/LLE.cpp
| | | M	src/libshogun/preproc/LLE.h
| | |    
* | | commit 436245db101bcab2e43734daa855d11bebb9c431
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat May 7 19:13:06 2011 +0400
| | | 
| | |     Added CLLE to modular interface
| | | 
| | | A	src/modular/PreProc.i
| | |    
* | | commit 4518b1ff9e0b7c633bbe62b2fd56ca67dbe32625
|/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |   Date:   Mon May 2 16:11:14 2011 +0400
| |   
| |       Added draft of LLE
| |   
| |   A	src/libshogun/preproc/LLE.cpp
| |   A	src/libshogun/preproc/LLE.h
| |     
* |   commit 400887873127d22e6af4ff51ef108958295b1021
|\ \  Merge: 8100b1c d6a2769
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jun 8 17:02:59 2011 +0200
| | | 
| | |     Merge branch 'streaming' of git://github.com/frx/shogun
| | |    
| * | commit d6a27699ed776bec538f07dd728c3c900e1b4963
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Wed Jun 8 20:24:12 2011 +0530
| | | 
| | |     Changed getline() to static, corrected call to getline in StreamingFile
| | | 
| | | M	src/libshogun/lib/AsciiFile.h
| | | M	src/libshogun/lib/StreamingFile.cpp
| | |      
| * |   commit 1fe555955c9ccdcd14268202d3cce1f556ebd946
| |\ \  Merge: db298dd 911a4db
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Wed Jun 8 20:22:53 2011 +0530
| | | | 
| | | |     Merge remote-tracking branch 'upstream/master' into streaming
| | | |     
| * | | commit db298dda4ec33087993d2cb41a5101be7c156948
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Wed Jun 8 18:39:38 2011 +0530
| | | | 
| | | |     Added getline() and getdelim() functions for OS X support.
| | | | 
| | | | M	src/libshogun/lib/AsciiFile.cpp
| | | | M	src/libshogun/lib/AsciiFile.h
| | | |       
* | | |   commit 8100b1c440e80a812d10e2a5fc36ecc4579b40ae
|\ \ \ \  Merge: 911a4db 1664147
| |_|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Wed Jun 8 17:01:26 2011 +0200
| | | |   
| | | |       Merge branch 'master' of git://github.com/sploving/shogun
| | | |     
| * | | commit 16641477312c2e7821aa8128af855b7fc06c4020
| |/ /  Author: Baozeng Ding <sploving1@gmail.com>
| | |   Date:   Wed Jun 8 22:10:13 2011 +0800
| | |   
| | |       add jblas vector support
| | |   
| | |   M	src/java_modular/swig_typemaps.i
| | |    
* | | commit 911a4db6ee959d7eb6d7dcb82dac9d72faf4be35
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jun 8 16:49:51 2011 +0200
| | | 
| | |     fix the java examples
| | | 
| | | M	examples/undocumented/java_modular/ClassifierLibsvmMinimalModular.java
| | | M	examples/undocumented/java_modular/MatrixTest.java
| | |    
* | | commit 046c6bf4e6b60ddb673f080de3b250b26823384b
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Wed Jun 8 16:45:51 2011 +0200
| |   
| |       use %import to make other data types known to swig
| |       
| |       To this end we need to introduce *_includes.i for the respective
| |       includes that can then be re-used and %included.
| |       
| |       For example for Features we put includes in Features_includes.i
| |       and issue in Features.i a %include "Features_includes.i".
| |       
| |       The Kernel module needs features and thus make them known. So we need to
| |       
| |       %include "Features_includes.i" /* to include the C/C++ headers */
| |       %import "Features.i" /* to make the data types known to swig */
| |   
| |   M	src/modular/Classifier.i
| |   A	src/modular/Classifier_includes.i
| |   M	src/modular/Clustering.i
| |   A	src/modular/Clustering_includes.i
| |   M	src/modular/Distance.i
| |   A	src/modular/Distance_includes.i
| |   M	src/modular/Distribution.i
| |   A	src/modular/Distribution_includes.i
| |   M	src/modular/Evaluation.i
| |   A	src/modular/Evaluation_includes.i
| |   M	src/modular/Features.i
| |   A	src/modular/Features_includes.i
| |   M	src/modular/Kernel.i
| |   A	src/modular/Kernel_includes.i
| |   M	src/modular/Library.i
| |   A	src/modular/Library_includes.i
| |   M	src/modular/Preprocessor.i
| |   A	src/modular/Preprocessor_includes.i
| |   M	src/modular/Regression.i
| |   A	src/modular/Regression_includes.i
| |   M	src/modular/Structure.i
| |   A	src/modular/Structure_includes.i
| |   
* | commit 10af48927638ef2a3ab58ba12fda8fc66baeeaed
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 8 00:29:42 2011 +0200
| | 
| |     add SGVector based constructor
| | 
| | M	src/libshogun/features/Labels.h
| |   
* | commit 5d0f71bc43b82b36e3480e1e7099ba2eda228f5f
|/  Author: Baozeng Ding <sploving1@gmail.com>
|   Date:   Tue Jun 7 22:38:10 2011 +0800
|   
|       add ClassifierLibsvmMinimalModular exmaple
|   
|   A	examples/undocumented/java_modular/ClassifierLibsvmMinimalModular.java
|  
* commit 54230de98bc567d838b3b13411624b4780a9a4f5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 6 21:45:24 2011 +0200
| 
|     Support all datatypes from SGDataType in new python_modular typemaps.
| 
| M	src/python_modular/swig_typemaps.i
|  
* commit 3856f733762990fa8023a7ae5e0431916cc3098d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 6 10:22:40 2011 +0200
| 
|     ifdev HAVE_LAPACK in MDS
| 
| M	src/libshogun/preprocessor/ClassicMDS.cpp
|  
* commit 37508ab1f6f3d490d776e6306b53c4c219414652
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 6 02:13:44 2011 +0200
| 
|     add some classpath magic
| 
| M	src/Makefile.template
| M	src/configure
|  
* commit 8b506342659f22dd16f075b98cf66cf7c4f2c5aa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 6 01:40:17 2011 +0200
| 
|     put shogun into org.shogun java package, fix configure / make distclean
|     targets and adjust java examples
| 
| M	examples/undocumented/java_modular/MatrixTest.java
| M	examples/undocumented/java_modular/VectorTest.java
| M	examples/undocumented/java_modular/minimal_test.java
| M	src/Makefile.template
| M	src/configure
| M	src/java_modular/build.xml
|    
*   commit c2edc9cfaa09febf871a7b1c5e15d6cd407240a5
|\  Merge: 64862f4 1853266
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Jun 5 23:32:39 2011 +0200
| | 
| |     Merge branch 'streaming' of git://github.com/frx/shogun
| |   
| * commit 18532660f482c88a94ed484d4ff12012e7999de5
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Mon Jun 6 08:01:53 2011 +0530
| | 
| |     Fixed a typo in parser.
| | 
| | M	src/libshogun/features/StreamingFeatures.cpp
| |   
| * commit 9074dc893a18f6c0997082ff0d44dbbc7eb093c2
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Mon Jun 6 07:51:19 2011 +0530
| | 
| |     Fixed indentation in parser, buffer code.
| | 
| | M	src/libshogun/features/StreamingFeatures.cpp
| | M	src/libshogun/features/StreamingFeatures.h
| | M	src/libshogun/lib/buffer.cpp
| | M	src/libshogun/lib/buffer.h
| | M	src/libshogun/lib/parser.cpp
| | M	src/libshogun/lib/parser.h
| |   
| * commit 01e673bb447ffd242d40114cb706d73c495ebb9d
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Mon Jun 6 07:02:47 2011 +0530
| | 
| |     Updated most of the streaming features code to use SGVector.
| | 
| | M	src/libshogun/features/StreamingFeatures.cpp
| | M	src/libshogun/features/StreamingFeatures.h
| | M	src/libshogun/lib/buffer.cpp
| | M	src/libshogun/lib/buffer.h
| | M	src/libshogun/lib/parser.cpp
| | M	src/libshogun/lib/parser.h
| |     
| *   commit d3e7adb9d9708af0eea7d1585a8e8ec25dd70d90
| |\  Merge: d7a7447 07b707b
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Jun 6 07:01:39 2011 +0530
| | | 
| | |     Merge remote-tracking branch 'upstream/master' into streaming
| | |    
| * | commit d7a7447bd2c86df50ba0bc1f8c464f399bce8691
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Thu Jun 2 09:12:47 2011 +0530
| | | 
| | |     Class-based buffer for the parser, not complete.
| | | 
| | | M	src/libshogun/features/StreamingFeatures.cpp
| | | M	src/libshogun/features/StreamingFeatures.h
| | | M	src/libshogun/lib/buffer.cpp
| | | M	src/libshogun/lib/buffer.h
| | | M	src/libshogun/lib/parser.cpp
| | | M	src/libshogun/lib/parser.h
| | |      
| * |   commit 486b84fa9811a498af88473aebc0e536e10ac937
| |\ \  Merge: 56951b5 95e0dad
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Thu Jun 2 09:11:45 2011 +0530
| | | | 
| | | |     Merge remote-tracking branch 'upstream/master' into streaming
| | | |     
| * | | commit 56951b52821617664f32d0326a980e3264d136d0
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Thu May 26 19:48:22 2011 +0530
| | | | 
| | | |     Initial commit of parser using a buffer class.
| | | | 
| | | | D	src/libshogun/lib/buffer.cpp~
| | | |     
| * | | commit 90a8c5560aabd80167a8e6164f5178458bdfdfc3
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Thu May 26 19:48:14 2011 +0530
| | | | 
| | | |     Initial commit of parser using a buffer class.
| | | | 
| | | | A	src/libshogun/lib/buffer.cpp
| | | | A	src/libshogun/lib/buffer.cpp~
| | | | A	src/libshogun/lib/buffer.h
| | | |     
| * | | commit d373ffea9cf2aab55f46c8136c9d820bc9aa3352
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Thu May 26 19:48:08 2011 +0530
| | | | 
| | | |     Initial commit of parser using a buffer class.
| | | | 
| | | | M	src/libshogun/lib/parser.cpp
| | | | M	src/libshogun/lib/parser.h
| | | |       
| * | |   commit 3a54a788cc7cdd0219a1cc31c2c0524cdb7369a7
| |\ \ \  Merge: 6b5a1d5 02cc0f9
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Thu May 26 19:46:37 2011 +0530
| | | | | 
| | | | |     Merging with master, reverting parser changes.
| | | | |      
| * | | | commit 6b5a1d53a730fb895eaa28286c16b75fa9805191
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Mon May 2 02:07:31 2011 +0530
| | | | | 
| | | | |     Eliminated explicit casting of examples by introducing separate variables for labelled and unlabelled egs.
| | | | | 
| | | | | M	src/libshogun/lib/parser.cpp
| | | | | M	src/libshogun/lib/parser.h
| | | | |        
| * | | |   commit 337c7501b74915c707ce7ca1547d2710ffff334f
| |\ \ \ \  Merge: 8dd6855 ecbc74b
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Mon May 2 02:06:23 2011 +0530
| | | | | | 
| | | | | |     Merge remote branch 'upstream/master' into streaming
| | | | | |       
| * | | | | commit 8dd6855744c1a627df9fd07e28c6192c97c8aba4
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sun May 1 05:21:50 2011 +0530
| | | | | | 
| | | | | |     Fixed problem in proper assignment of feature vectors.
| | | | | | 
| | | | | | M	src/libshogun/lib/parser.cpp
| | | | | |       
| * | | | | commit 2e7d0c1e02389926128b5f6296413a09aa485074
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sun May 1 05:17:54 2011 +0530
| | | | | | 
| | | | | |     Made separate buffer space for feature vectors. Now uses new instead of malloc.
| | | | | | 
| | | | | | M	src/libshogun/lib/parser.cpp
| | | | | | M	src/libshogun/lib/parser.h
| | | | | |         
| * | | | |   commit 38ba7c1ce3af844a1ff1f3208dc8b300797e3e53
| |\ \ \ \ \  Merge: 1a930c3 046e59e
| | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | Date:   Sun May 1 00:43:37 2011 +0530
| | | | | | | 
| | | | | | |     Merge remote branch 'upstream/master' into streaming
| | | | | | |          
| * | | | | |   commit 1a930c3ba3f87e6abf9cc18b2bbba43c3da2ef9f
| |\ \ \ \ \ \  Merge: 38d7b67 9ce80cb
| | | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | | Date:   Thu Apr 28 02:21:01 2011 +0530
| | | | | | | | 
| | | | | | | |     Merge remote branch 'upstream/master' into streaming
| | | | | | | |         
* | | | | | | | commit 64862f40c31c6439cc68b215eaf50e5839dfef46
| |_|_|_|_|_|/  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | | | |   Date:   Sun Jun 5 23:31:30 2011 +0200
| | | | | | |   
| | | | | | |       don't create any directory on configure
| | | | | | |   
| | | | | | |   M	src/configure
| | | | | | |        
* | | | | | | commit 07b707bca3f6f56797a783f2004d99b38c054528
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Sat Jun 4 23:44:16 2011 +0200
| | | | | | | 
| | | | | | |     Potentially work around the java_modular compile error.
| | | | | | |     
| | | | | | |     This commit *may* again cause issues with labels not being known in classifiers or
| | | | | | |     kernels respectively in preprocs.
| | | | | | | 
| | | | | | | M	src/libshogun/machine/LinearMachine.h
| | | | | | | M	src/libshogun/preprocessor/KernelPCACut.h
| | | | | | | M	src/modular/Classifier.i
| | | | | | | M	src/modular/Preprocessor.i
| | | | | | |        
* | | | | | | commit aba45d027c602157e22578b67d9972d1cf84cba3
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Fri Jun 3 23:53:28 2011 +0400
| | | | | | | 
| | | | | | |     Cleaned and fixed CClassicMDS
| | | | | | | 
| | | | | | | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | | | | | M	src/libshogun/preprocessor/ClassicMDS.h
| | | | | | | M	src/libshogun/preprocessor/Preprocessor.h
| | | | | | |        
* | | | | | | commit 88443c93321ad4bdfbbd73b2e095963dedfb1e9f
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Fri Jun 3 02:32:39 2011 +0400
| | | | | | | 
| | | | | | |     Adapted CClassicMDS to new structure
| | | | | | | 
| | | | | | | D	src/libshogun/preproc/ClassicMDS.cpp
| | | | | | | D	src/libshogun/preproc/ClassicMDS.h
| | | | | | | A	src/libshogun/preprocessor/ClassicMDS.cpp
| | | | | | | A	src/libshogun/preprocessor/ClassicMDS.h
| | | | | | | M	src/modular/Preprocessor.i
| | | | | | |          
* | | | | | |   commit 6e1583e729631950e0c2b2e7f0a666f8be3ff674
|\ \ \ \ \ \ \  Merge: 37095f3 2aece7c
| | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | Date:   Fri Jun 3 01:49:59 2011 +0400
| | | | | | | | 
| | | | | | | |     Merged upstream
| | | | | | | |           
| * | | | | | |   commit 2aece7cb351afd5346d7ab9518b66a12599549c8
| |\ \ \ \ \ \ \  Merge: 69dd074 0449ad7
| | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | Date:   Thu Jun 2 18:26:04 2011 +0200
| | | | | | | | | 
| | | | | | | | |     Merge branch 'master' of git://github.com/serialhex/shogun
| | | | | | | | |          
| | * | | | | | | commit 0449ad7244cf539e85c5da372ae5f1db9659fb46
| | | | | | | | | Author: Justin Patera <serialhex@gmail.com>
| | | | | | | | | Date:   Thu Jun 2 11:46:17 2011 -0400
| | | | | | | | | 
| | | | | | | | |     edited whitespace for src/configure & src/ruby_modular/swig_typemaps.i  also removed LD_LIBRARY_PATH from
| | | | | | | | |     src/configure as it's an environment variable, not a compile option (i be we tall did)
| | | | | | | | | 
| | | | | | | | | M	src/configure
| | | | | | | | | M	src/ruby_modular/swig_typemaps.i
| | | | | | | | |          
| | * | | | | | | commit e4542e02414de0bf963e666e9775ea2f24142d30
| | | | | | | | | Author: Justin Patera <serialhex@gmail.com>
| | | | | | | | | Date:   Thu Jun 2 06:18:25 2011 -0400
| | | | | | | | | 
| | | | | | | | |     updated LD_LIBRARY_PATH in configure script for ruby & changed ruby typemaps so they also get the length of a string.
| | | | | | | | | 
| | | | | | | | | M	src/configure
| | | | | | | | | M	src/ruby_modular/swig_typemaps.i
| | | | | | | | |          
| | * | | | | | | commit c04cf61eaed2415f455e4ab331e47e78b7b1cab8
| | | | | | | | | Author: Justin Patera <serialhex@gmail.com>
| | | | | | | | | Date:   Tue May 31 23:21:33 2011 -0400
| | | | | | | | | 
| | | | | | | | |     updated config script to handle libruby<VER>*.so* & libruby.so* naming conventions
| | | | | | | | | 
| | | | | | | | | M	src/configure
| | | | | | | | |          
| | * | | | | | | commit 9eae00fa26018fc686a0e0cf122017d3bfd2d5ff
| | | | | | | | | Author: Justin Patera <serialhex@gmail.com>
| | | | | | | | | Date:   Tue May 31 21:33:16 2011 -0400
| | | | | | | | | 
| | | | | | | | |     updated configure script & made the ruby typemaps 1.9 compatible
| | | | | | | | | 
| | | | | | | | | M	src/configure
| | | | | | | | | M	src/ruby_modular/swig_typemaps.i
| | | | | | | | |          
| * | | | | | | | commit 69dd0744214a99b89e54e9d194789ebf71a06845
| | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | Date:   Thu Jun 2 16:36:58 2011 +0200
| | | | | | | | | 
| | | | | | | | |     fix renames CMachine -> Machine instead of nonexistent CClassifier
| | | | | | | | | 
| | | | | | | | | M	src/modular/Classifier.i
| | | | | | | | | M	src/modular/Regression.i
| | | | | | | | |          
| * | | | | | | | commit 0f96560a005fb838c229a4cc2ecc0aa966c9f051
| | |_|_|_|_|_|/  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | | | | |   Date:   Thu Jun 2 16:12:06 2011 +0200
| | | | | | | |   
| | | | | | | |       don't make apply an inline function
| | | | | | | |   
| | | | | | | |   M	src/libshogun/machine/LinearMachine.h
| | | | | | | |           
| * | | | | | |   commit 95e0dad0568b00b3721d2f0f69b9eec44414dea6
| |\ \ \ \ \ \ \  Merge: e0842b9 8a3882b
| | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | Date:   Wed Jun 1 20:00:32 2011 +0200
| | | | | | | | | 
| | | | | | | | |     Merge branch 'master' of git://github.com/sploving/shogun
| | | | | | | | |          
| | * | | | | | | commit 8a3882b7f9137ae438856a84e678aff304eeb380
| | |/ / / / / /  Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | |   Date:   Wed Jun 1 11:25:58 2011 +0800
| | | | | | | |   
| | | | | | | |       fix stringlist typemap bug and create shogun dir in configure file
| | | | | | | |   
| | | | | | | |   M	src/configure
| | | | | | | |   M	src/java_modular/swig_typemaps.i
| | | | | | | |         
| * | | | | | | commit e0842b989495c99b328bf13e5a8d72f4a958c7ca
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Jun 1 15:09:33 2011 +0200
| | | | | | | | 
| | | | | | | |     added example of how to apply a set of CParameterCombination trees to a support vector machine
| | | | | | | | 
| | | | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | | | | A	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | | | | | |         
| * | | | | | | commit 084f0ec500485e0fd9e71ebd7d7e148798a90fd5
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Jun 1 15:08:26 2011 +0200
| | | | | | | | 
| | | | | | | |     added some comments for using this class
| | | | | | | | 
| | | | | | | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | | | | | |         
| * | | | | | | commit 0c0b73bae2f0a158f3590c4e18579524bcc58fcb
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Jun 1 14:12:29 2011 +0200
| | | | | | | | 
| | | | | | | |     fixed a bug where wrong parameter were tried to
| | | | | | | |     cody style
| | | | | | | |     added adress output in print
| | | | | | | | 
| | | | | | | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | | | | | |         
| * | | | | | | commit 3c1f3b98b5ad967e7f6ef78dcade3e43ed326929
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Jun 1 14:03:14 2011 +0200
| | | | | | | | 
| | | | | | | |     code cleanup and another check for same parameters that are not to be copied
| | | | | | | | 
| | | | | | | | M	src/libshogun/base/Parameter.cpp
| | | | | | | |         
| * | | | | | | commit 7179e1c3be32642a669ace678f1d10b4c43361e2
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Jun 1 13:03:36 2011 +0200
| | | | | | | | 
| | | | | | | |     avoid to REF if adresses are the same in set_from_parameters
| | | | | | | | 
| | | | | | | | M	src/libshogun/base/Parameter.cpp
| | | | | | | |         
| * | | | | | | commit c237d54347c8b80a5a01b649984fbc62ab8560ac
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Jun 1 12:32:43 2011 +0200
| | | | | | | | 
| | | | | | | |     reverts "in set_from_parameters, only copy data if it is acutally different"
| | | | | | | |     the check is now moved to the correct place, before memcpy call
| | | | | | | | 
| | | | | | | | M	src/libshogun/base/Parameter.cpp
| | | | | | | |         
| * | | | | | | commit c3a4bbe984116d00b853efc2cd444aaa5405d9f9
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Jun 1 12:18:59 2011 +0200
| | | | | | | | 
| | | | | | | |     in set_from_parameters, only copy data if it is acutally different
| | | | | | | | 
| | | | | | | | M	src/libshogun/base/Parameter.cpp
| | | | | | | |         
| * | | | | | | commit e96e6c27c5edb5fa3ef5a55f233cd5aaa864dddd
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Jun 1 12:05:10 2011 +0200
| | | | | | | | 
| | | | | | | |     REF before UNREF in set_from_aprameters to prevent deletion of CSGObjects in case the new one is the same as the old one
| | | | | | | | 
| | | | | | | | M	src/libshogun/base/Parameter.cpp
| | | | | | | |         
| * | | | | | | commit b25fd92ea7062302d8997ccc624ff1bc573f5de5
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Jun 1 10:38:18 2011 +0200
| | | | | | | | 
| | | | | | | |     fixed bug in set_from_parameters, where wrong parameter is set if parameter with desired name does not exist
| | | | | | | | 
| | | | | | | | M	src/libshogun/base/Parameter.cpp
| | | | | | | |           
| * | | | | | |   commit 764290b270c35b367a1dfd4ce926c1385370f05c
| |\ \ \ \ \ \ \  Merge: d71f5c6 cf2f5b2
| | |/ / / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | |   Date:   Wed Jun 1 10:37:00 2011 +0200
| | | | | | | |   
| | | | | | | |       Merge remote branch 'upstream/master'
| | | | | | | |         
| | * | | | | | commit cf2f5b27f831bd56cc8a4dd522ced2c58aca65e4
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Wed Jun 1 00:31:10 2011 +0200
| | | | | | | | 
| | | | | | | |     add jblas / ujmp detection (assumes that the jblas.jar / ujmp.jar are
| | | | | | | |     		either in /usr/share/java/ or in CLASSPATH)
| | | | | | | | 
| | | | | | | | M	src/configure
| | | | | | | |         
| | * | | | | | commit e0c6f7ad66475bddd3f0de9831f87ffb9615b147
| | | | | | | | Author: Daniel Matthew Korn <daniel.m.korn@gmail.com>
| | | | | | | | Date:   Tue May 31 10:32:07 2011 -0700
| | | | | | | | 
| | | | | | | |     Added the SGMatrix Typemap
| | | | | | | | 
| | | | | | | | M	src/csharp_modular/swig_typemaps.i
| | | | | | | |         
| * | | | | | | commit d71f5c6495a0ca818fa7677051cd6c0ce06ff8bb
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Tue May 31 17:56:10 2011 +0200
| | | | | | | | 
| | | | | | | |     initial draft for applying CParameterCombination trees to actual parameter instances
| | | | | | | | 
| | | | | | | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | | | | | | M	src/libshogun/modelselection/ParameterCombination.h
| | | | | | | |         
| * | | | | | | commit 9f7d5e30364e6dcbf3be618691feed49f59c86a5
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Tue May 31 17:12:51 2011 +0200
| | | | | | | | 
| | | | | | | |     applied interface changes of CModelSelectionParameters
| | | | | | | | 
| | | | | | | | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | | | | | | |         
| * | | | | | | commit ae12dae2ea7393aa8284ac2846f81ba8e30ffd5b
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Tue May 31 17:07:08 2011 +0200
| | | | | | | | 
| | | | | | | |     comment format style
| | | | | | | | 
| | | | | | | | M	src/libshogun/modelselection/ParameterCombination.h
| | | | | | | |         
| * | | | | | | commit 4bbdc2f7fa3a48ad177063d50704ca60966aa290
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Tue May 31 17:06:47 2011 +0200
| | | | | | | | 
| | | | | | | |     print method now shows node name in case of CSGObject node
| | | | | | | | 
| | | | | | | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | | | | | |         
| * | | | | | | commit 37ef3aeea050eaff8ff07835cd6aad71f3b53db7
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Tue May 31 17:03:27 2011 +0200
| | | | | | | | 
| | | | | | | |     -a CSGObject node now has a name
| | | | | | | |     -when constructing CParameterCombination instances with CSGObjects, names of the node will now be the node name of the current CModelSelectionParameter node
| | | | | | | | 
| | | | | | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | | | | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | | | | | |         
| * | | | | | | commit ed4afcfc8a115cadf02d3e1707a4a6196a20df42
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Tue May 31 13:19:38 2011 +0200
| | | | | | | | 
| | | | | | | |     removed friend class, not necessary anymore
| | | | | | | | 
| | | | | | | | M	src/libshogun/modelselection/ParameterCombination.h
| | | | | | | |         
| * | | | | | | commit 62e1bc71810a3d6124b7cb1b58113fd29de044e8
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Tue May 31 13:11:12 2011 +0200
| | | | | | | | 
| | | | | | | |     removed std-includes
| | | | | | | | 
| | | | | | | | M	examples/undocumented/libshogun/classifier_minimal_svm.cpp
| | | | | | | |         
| * | | | | | | commit 98a95bc67369da375d6370ae585497e5e9a169d3
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Tue May 31 13:04:39 2011 +0200
| | | | | | | | 
| | | | | | | |     coding style
| | | | | | | | 
| | | | | | | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | | | | | |         
| * | | | | | | commit ff9f5e1fc9d6f895aea32a578b817102a4d14cc2
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Tue May 31 13:03:32 2011 +0200
| | | | | | | | 
| | | | | | | |     changed char* to const char* to prevent gcc warnings
| | | | | | | | 
| | | | | | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | | | | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | | | | | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | | | | | | M	src/libshogun/modelselection/ParameterCombination.h
| | | | | | | |         
| * | | | | | | commit c62e26c5a262b2f68836c3fcbd980825a8379295
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Tue May 31 12:21:27 2011 +0200
| | | | | | | | 
| | | | | | | |     code style
| | | | | | | | 
| | | | | | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | | | | |         
| * | | | | | | commit 1922f8e2777ebb96377e9edc5e9a460b34ad12b4
| |/ / / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | |   Date:   Tue May 31 12:18:48 2011 +0200
| | | | | | |   
| | | | | | |       renamed childs to children
| | | | | | |   
| | | | | | |   M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | | | |   M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | | | | |   M	src/libshogun/modelselection/ParameterCombination.h
| | | | | | |        
| * | | | | | commit 9a6a36e2486db648f80312f9d6b995f2f4885316
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Mon May 30 20:54:19 2011 +0200
| | | | | | | 
| | | | | | |     forgot this file. initial working version of parameter specification
| | | | | | | 
| | | | | | | A	src/libshogun/modelselection/ParameterCombination.cpp
| | | | | | |        
| * | | | | | commit a2d78d36736cb9087461ca963e7d9c9f1cc13d68
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Mon May 30 20:46:13 2011 +0200
| | | | | | | 
| | | | | | |     made method get_parameter public (needed for printing methods of ParameterCombination)
| | | | | | | 
| | | | | | | M	src/libshogun/base/Parameter.h
| | | | | | |        
| * | | | | | commit 17fac363c58f05c0ab24ab4a1f267d50027bcfa0
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Mon May 30 20:43:39 2011 +0200
| | | | | | | 
| | | | | | |     -made most methods public
| | | | | | |     -name change m_name to m_node_name
| | | | | | | 
| | | | | | | M	src/libshogun/modelselection/ParameterCombination.h
| | | | | | |        
| * | | | | | commit 17f9b064b08ef3dfa275c1d403ac0df9f629445f
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Mon May 30 20:42:15 2011 +0200
| | | | | | | 
| | | | | | |     -added basic check if it is legal to append a child
| | | | | | |     -renamed m_name to m_node_name to avoid confusion with get_name() method
| | | | | | | 
| | | | | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | | | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | | | | |        
| * | | | | | commit 30096b91b4fde2393ecf2f416a8d2179abb85617
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Mon May 30 20:41:03 2011 +0200
| | | | | | | 
| | | | | | |     added two methods to add parameters from another parameter instance and to check whether a parameter with a certain name is included
| | | | | | | 
| | | | | | | M	src/libshogun/base/Parameter.cpp
| | | | | | | M	src/libshogun/base/Parameter.h
| | | | | | |        
| * | | | | | commit 4bdbec9040e2652573d022a86a0ab48beca6d1c4
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Mon May 30 20:39:27 2011 +0200
| | | | | | | 
| | | | | | |     corrected name of a delta parameter
| | | | | | | 
| | | | | | | M	src/libshogun/kernel/DistantSegmentsKernel.cpp
| | | | | | |        
| * | | | | | commit 3deb1cc7012f8b880cb106deef6b2eed1639a2f0
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Mon May 30 20:39:06 2011 +0200
| | | | | | | 
| | | | | | |     added new example to makefile
| | | | | | | 
| | | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | | |        
| * | | | | | commit da0ed76217447d737bd0c1e9a2b5bdc7023f5f5e
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Mon May 30 20:37:48 2011 +0200
| | | | | | | 
| | | | | | |     added example for exracting parameter combinations of a CModelSelectionParameters tree
| | | | | | | 
| | | | | | | A	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | | | | | |          
| * | | | | |   commit c9d0b0e3f382706e3f4905b3afe9192d5b59d00b
| |\ \ \ \ \ \  Merge: 8b12d74 66c3ce3
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Mon May 30 19:44:48 2011 +0200
| | | | | | | | 
| | | | | | | |     Merge remote branch 'upstream/master'
| | | | | | | |         
| | * | | | | | commit 66c3ce3e2433d9463bda7eadf3767e006ed21c14
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Mon May 30 15:04:52 2011 +0200
| | | | | | | | 
| | | | | | | |     rename classify / classify_example to more generic apply() - to be used
| | | | | | | |     in all machines. adjust examples accordingly.
| | | | | | | | 
| | | | | | | | M	examples/undocumented/libshogun/classifier_libsvm.cpp
| | | | | | | | M	examples/undocumented/libshogun/classifier_minimal_svm.cpp
| | | | | | | | M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| | | | | | | | M	examples/undocumented/libshogun/parameter_iterate_float64.cpp
| | | | | | | | M	examples/undocumented/libshogun/parameter_iterate_sgobject.cpp
| | | | | | | | M	examples/undocumented/octave_modular/classifier_domainadaptationsvm_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_gmnpsvm_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_gpbtsvm_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_knn_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_lda_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_liblinear_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_libsvm_minimal_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_libsvm_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_libsvmmulticlass_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_libsvmoneclass_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_mpdsvm_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_perceptron_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_subgradientsvm_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_svmlight_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_svmlin_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_svmocas_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_svmsgd_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/kernel_histogramword_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/mkl_multiclass_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/regression_krr_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/regression_libsvr_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/regression_svrlight_modular.m
| | | | | | | | M	examples/undocumented/python_modular/classifier_averaged_perceptron_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_custom_kernel_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_domainadaptationsvm_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_gaussiannaivebayes_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_gmnpsvm_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_gpbtsvm_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_knn_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_larank_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_lda_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_liblinear_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_libsvm_minimal_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_libsvm_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_libsvmmulticlass_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_libsvmoneclass_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_mpdsvm_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_perceptron_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_subgradientsvm_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_svmlight_batch_linadd_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_svmlight_linear_term_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_svmlight_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_svmlin_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_svmocas_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_svmsgd_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_combined_custom_poly_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_histogram_word_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_salzberg_word_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/mkl_binclass_modular.py
| | | | | | | | M	examples/undocumented/python_modular/mkl_multiclass_modular.py
| | | | | | | | M	examples/undocumented/python_modular/regression_krr_modular.py
| | | | | | | | M	examples/undocumented/python_modular/regression_libsvr_modular.py
| | | | | | | | M	examples/undocumented/python_modular/regression_svrlight_modular.py
| | | | | | | | M	examples/undocumented/r_modular/classifier_gmnpsvm_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_gpbtsvm_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_knn_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_lda_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_liblinear_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_libsvm_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_libsvmmulticlass_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_libsvmoneclass_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_mpdsvm_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_perceptron_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_subgradientsvm_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_svmlight_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_svmlin_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_svmocas_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_svmsgd_modular.R
| | | | | | | | M	examples/undocumented/r_modular/mkl_multiclass_modular.R
| | | | | | | | M	src/libshogun/classifier/AveragedPerceptron.cpp
| | | | | | | | M	src/libshogun/classifier/GaussianNaiveBayes.cpp
| | | | | | | | M	src/libshogun/classifier/GaussianNaiveBayes.h
| | | | | | | | M	src/libshogun/classifier/KNN.cpp
| | | | | | | | M	src/libshogun/classifier/KNN.h
| | | | | | | | M	src/libshogun/classifier/Perceptron.cpp
| | | | | | | | M	src/libshogun/classifier/PluginEstimate.cpp
| | | | | | | | M	src/libshogun/classifier/PluginEstimate.h
| | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVM.h
| | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| | | | | | | | M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| | | | | | | | M	src/libshogun/classifier/svm/MultiClassSVM.h
| | | | | | | | M	src/libshogun/classifier/svm/SVM.cpp
| | | | | | | | M	src/libshogun/classifier/svm/ScatterSVM.cpp
| | | | | | | | M	src/libshogun/classifier/svm/ScatterSVM.h
| | | | | | | | M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| | | | | | | | M	src/libshogun/classifier/svm/WDSVMOcas.h
| | | | | | | | M	src/libshogun/clustering/Hierarchical.h
| | | | | | | | M	src/libshogun/clustering/KMeans.h
| | | | | | | | M	src/libshogun/machine/DistanceMachine.h
| | | | | | | | M	src/libshogun/machine/KernelMachine.cpp
| | | | | | | | M	src/libshogun/machine/KernelMachine.h
| | | | | | | | M	src/libshogun/machine/LinearMachine.cpp
| | | | | | | | M	src/libshogun/machine/LinearMachine.h
| | | | | | | | M	src/libshogun/machine/Machine.h
| | | | | | | | M	src/libshogunui/GUIClassifier.cpp
| | | | | | | | M	src/libshogunui/GUIPluginEstimate.cpp
| | | | | | | | M	src/libshogunui/GUIPluginEstimate.h
| | | | | | | | M	src/libshogunui/SGInterface.cpp
| | | | | | | |         
| * | | | | | | commit 8b12d744dbf10eb2c6a635f7101053759d074fda
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Mon May 30 19:44:17 2011 +0200
| | | | | | | | 
| | | | | | | |     initial (working) version of a tree structure to hold combinations of parameters for model selection.
| | | | | | | | 
| | | | | | | | A	src/libshogun/modelselection/ParameterCombination.h
| | | | | | | |         
| * | | | | | | commit a0412d9f400dce3fde8119113233029f2b0f22a5
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Mon May 30 19:43:11 2011 +0200
| | | | | | | | 
| | | | | | | |     finally: initial (working) version of tree structure to specify parameters and their ranges and relations for model selection
| | | | | | | | 
| | | | | | | | A	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | | | | | A	src/libshogun/modelselection/ModelSelectionParameters.h
| | | | | | | |         
| * | | | | | | commit c61bde11bf1205c90b29576fe2c1b33f2e99ba8b
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Mon May 30 19:41:08 2011 +0200
| | | | | | | | 
| | | | | | | |     Revert "initial (working) version of the tree structure to specify parameters and their ranges for model selection."
| | | | | | | |     
| | | | | | | |     This reverts commit 5053f5b7b5ef6ea1cc33a46caa68fd1d9681a2d1.
| | | | | | | |     git mistake again :(
| | | | | | | | 
| | | | | | | | D	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | | | | |         
| * | | | | | | commit 5e664690575de3b3d004d928931edb9c239d6942
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Mon May 30 19:40:42 2011 +0200
| | | | | | | | 
| | | | | | | |     Revert "initial working version"
| | | | | | | |     
| | | | | | | |     This reverts commit 244f7879a95f985f9e1a8c8c1b5865297e741dfd.
| | | | | | | |     git mistake again :(
| | | | | | | | 
| | | | | | | | D	src/libshogun/modelselection/ModelSelectionParameters.h
| | | | | | | |         
| * | | | | | | commit 244f7879a95f985f9e1a8c8c1b5865297e741dfd
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Mon May 30 19:38:34 2011 +0200
| | | | | | | | 
| | | | | | | |     initial working version
| | | | | | | | 
| | | | | | | | A	src/libshogun/modelselection/ModelSelectionParameters.h
| | | | | | | |         
| * | | | | | | commit 5053f5b7b5ef6ea1cc33a46caa68fd1d9681a2d1
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Mon May 30 19:37:09 2011 +0200
| | | | | | | | 
| | | | | | | |     initial (working) version of the tree structure to specify parameters and their ranges for model selection.
| | | | | | | | 
| | | | | | | | A	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | | | | |         
| * | | | | | | commit 70af5479b18810b2f0f4d8a3cfaa1bb71e663996
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Mon May 30 19:36:29 2011 +0200
| | | | | | | | 
| | | | | | | |     Revert "initial (working) version. class to specify parameters and ranges. Possibility to generate combinations from it"
| | | | | | | |     Wrong file.
| | | | | | | |     This reverts commit e28c442998d45132f9b2427b20f3d62339ad8006.
| | | | | | | | 
| | | | | | | | D	src/libshogun/modelselection/ModelSelection.cpp
| | | | | | | | D	src/libshogun/modelselection/ModelSelection.h
| | | | | | | |         
| * | | | | | | commit e28c442998d45132f9b2427b20f3d62339ad8006
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Mon May 30 19:03:03 2011 +0200
| | | | | | | | 
| | | | | | | |     initial (working) version. class to specify parameters and ranges. Possibility to generate combinations from it
| | | | | | | | 
| | | | | | | | A	src/libshogun/modelselection/ModelSelection.cpp
| | | | | | | | A	src/libshogun/modelselection/ModelSelection.h
| | | | | | | |           
| * | | | | | |   commit 0f166332506a18d4eacd381ed9dfdc1986334e20
| |\ \ \ \ \ \ \  Merge: 14b5e06 6688b5c
| | |/ / / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | |   Date:   Mon May 30 10:36:30 2011 +0200
| | | | | | | |   
| | | | | | | |       Merge remote branch 'upstream/master'
| | | | | | | |         
| | * | | | | | commit 6688b5ca7d4487407f0c4171811f8b4c792e6834
| | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | Date:   Sun May 29 18:57:46 2011 +0800
| | | | | | | | 
| | | | | | | |     use lua_objlen to count table size, improve error handing, and add lua vector/matrix test
| | | | | | | | 
| | | | | | | | A	examples/undocumented/lua_modular/MatrixTest.lua
| | | | | | | | A	examples/undocumented/lua_modular/VectorTest.lua
| | | | | | | | M	src/lua_modular/shogun.lua
| | | | | | | | M	src/lua_modular/swig_typemaps.i
| | | | | | | |         
| | * | | | | | commit 54150e818b4527321cdd74d5a018324ff8e7e305
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Sun May 29 11:39:59 2011 +0200
| | | | | | | | 
| | | | | | | |     Transistion: rename CClassifier to CMachine
| | | | | | | |     
| | | | | | | |     correspondingly rename CLinearClassifier -> CLinearMachine
| | | | | | | |     and move them to the machine/ subdirectory
| | | | | | | | 
| | | | | | | | M	examples/undocumented/python_modular/classifier_gaussiannaivebayes_modular.py
| | | | | | | | M	src/libshogun/classifier/AveragedPerceptron.cpp
| | | | | | | | M	src/libshogun/classifier/AveragedPerceptron.h
| | | | | | | | D	src/libshogun/classifier/Classifier.cpp
| | | | | | | | D	src/libshogun/classifier/Classifier.h
| | | | | | | | D	src/libshogun/classifier/DistanceMachine.cpp
| | | | | | | | D	src/libshogun/classifier/DistanceMachine.h
| | | | | | | | M	src/libshogun/classifier/GaussianNaiveBayes.cpp
| | | | | | | | M	src/libshogun/classifier/GaussianNaiveBayes.h
| | | | | | | | M	src/libshogun/classifier/KNN.h
| | | | | | | | D	src/libshogun/classifier/KernelMachine.cpp
| | | | | | | | D	src/libshogun/classifier/KernelMachine.h
| | | | | | | | M	src/libshogun/classifier/KernelPerceptron.h
| | | | | | | | M	src/libshogun/classifier/LDA.cpp
| | | | | | | | M	src/libshogun/classifier/LDA.h
| | | | | | | | M	src/libshogun/classifier/LPBoost.h
| | | | | | | | M	src/libshogun/classifier/LPM.h
| | | | | | | | D	src/libshogun/classifier/LinearClassifier.cpp
| | | | | | | | D	src/libshogun/classifier/LinearClassifier.h
| | | | | | | | M	src/libshogun/classifier/Perceptron.cpp
| | | | | | | | M	src/libshogun/classifier/Perceptron.h
| | | | | | | | M	src/libshogun/classifier/PluginEstimate.cpp
| | | | | | | | M	src/libshogun/classifier/PluginEstimate.h
| | | | | | | | M	src/libshogun/classifier/SubGradientLPM.cpp
| | | | | | | | M	src/libshogun/classifier/SubGradientLPM.h
| | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| | | | | | | | M	src/libshogun/classifier/svm/LibLinear.cpp
| | | | | | | | M	src/libshogun/classifier/svm/LibLinear.h
| | | | | | | | M	src/libshogun/classifier/svm/SGDQN.cpp
| | | | | | | | M	src/libshogun/classifier/svm/SGDQN.h
| | | | | | | | M	src/libshogun/classifier/svm/SVM.h
| | | | | | | | M	src/libshogun/classifier/svm/SVMLight.cpp
| | | | | | | | M	src/libshogun/classifier/svm/SVMLightOneClass.cpp
| | | | | | | | M	src/libshogun/classifier/svm/SVMLightOneClass.h
| | | | | | | | M	src/libshogun/classifier/svm/SVMLin.cpp
| | | | | | | | M	src/libshogun/classifier/svm/SVMLin.h
| | | | | | | | M	src/libshogun/classifier/svm/SVMOcas.cpp
| | | | | | | | M	src/libshogun/classifier/svm/SVMOcas.h
| | | | | | | | M	src/libshogun/classifier/svm/SVMSGD.cpp
| | | | | | | | M	src/libshogun/classifier/svm/SVMSGD.h
| | | | | | | | M	src/libshogun/classifier/svm/SubGradientSVM.cpp
| | | | | | | | M	src/libshogun/classifier/svm/SubGradientSVM.h
| | | | | | | | M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| | | | | | | | M	src/libshogun/classifier/svm/WDSVMOcas.h
| | | | | | | | M	src/libshogun/clustering/Hierarchical.h
| | | | | | | | M	src/libshogun/clustering/KMeans.h
| | | | | | | | M	src/libshogun/kernel/LinearKernel.h
| | | | | | | | M	src/libshogun/kernel/SplineKernel.h
| | | | | | | | A	src/libshogun/machine/DistanceMachine.cpp
| | | | | | | | A	src/libshogun/machine/DistanceMachine.h
| | | | | | | | A	src/libshogun/machine/KernelMachine.cpp
| | | | | | | | A	src/libshogun/machine/KernelMachine.h
| | | | | | | | A	src/libshogun/machine/LinearMachine.cpp
| | | | | | | | A	src/libshogun/machine/LinearMachine.h
| | | | | | | | A	src/libshogun/machine/Machine.cpp
| | | | | | | | A	src/libshogun/machine/Machine.h
| | | | | | | | M	src/libshogun/regression/KRR.h
| | | | | | | | M	src/libshogun/regression/svr/SVRLight.cpp
| | | | | | | | M	src/libshogunui/GUIClassifier.cpp
| | | | | | | | M	src/libshogunui/GUIClassifier.h
| | | | | | | | M	src/libshogunui/SGInterface.cpp
| | | | | | | | M	src/modular/Classifier.i
| | | | | | | | M	src/modular/Clustering.i
| | | | | | | | M	src/modular/Regression.i
| | | | | | | |         
| | * | | | | | commit 52ce59f262ac48a6becbcca1d73843740a83e4c8
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Sun May 29 00:24:51 2011 +0200
| | | | | | | | 
| | | | | | | |     rename preproc -> preprocessor
| | | | | | | | 
| | | | | | | | M	examples/descriptions/static/distance_canberraword.txt
| | | | | | | | M	examples/descriptions/static/distance_hammingword.txt
| | | | | | | | M	examples/descriptions/static/distance_manhattenword.txt
| | | | | | | | M	examples/undocumented/python_modular/distance_canberraword_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distance_hammingword_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distance_manhattenword_modular.py
| | | | | | | | M	examples/undocumented/python_modular/features_string_char_compressed_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_comm_ulong_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_comm_word_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_weighted_comm_word_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/preproc_logplusone_modular.py
| | | | | | | | M	examples/undocumented/python_modular/preproc_normone_modular.py
| | | | | | | | M	examples/undocumented/python_modular/preproc_prunevarsubmean_modular.py
| | | | | | | | M	examples/undocumented/python_modular/preproc_sortulongstring_modular.py
| | | | | | | | M	examples/undocumented/python_modular/preproc_sortwordstring_modular.py
| | | | | | | | M	examples/undocumented/python_modular/serialization_complex_example.py
| | | | | | | | M	examples/undocumented/python_modular/tests_check_commwordkernel_memleak_modular.py
| | | | | | | | M	src/.generate_link_dependencies.py
| | | | | | | | M	src/libshogun/features/Features.cpp
| | | | | | | | M	src/libshogun/features/Features.h
| | | | | | | | M	src/libshogun/features/SimpleFeatures.h
| | | | | | | | M	src/libshogun/features/SparseFeatures.h
| | | | | | | | M	src/libshogun/features/StringFeatures.h
| | | | | | | | D	src/libshogun/preproc/DecompressString.h
| | | | | | | | D	src/libshogun/preproc/KernelPCACut.cpp
| | | | | | | | D	src/libshogun/preproc/KernelPCACut.h
| | | | | | | | D	src/libshogun/preproc/LogPlusOne.cpp
| | | | | | | | D	src/libshogun/preproc/LogPlusOne.h
| | | | | | | | D	src/libshogun/preproc/NormDerivativeLem3.cpp
| | | | | | | | D	src/libshogun/preproc/NormDerivativeLem3.h
| | | | | | | | D	src/libshogun/preproc/NormOne.cpp
| | | | | | | | D	src/libshogun/preproc/NormOne.h
| | | | | | | | D	src/libshogun/preproc/PCACut.cpp
| | | | | | | | D	src/libshogun/preproc/PCACut.h
| | | | | | | | D	src/libshogun/preproc/PreProc.cpp
| | | | | | | | D	src/libshogun/preproc/PreProc.h
| | | | | | | | D	src/libshogun/preproc/PruneVarSubMean.cpp
| | | | | | | | D	src/libshogun/preproc/PruneVarSubMean.h
| | | | | | | | D	src/libshogun/preproc/RandomFourierGaussPreproc.cpp
| | | | | | | | D	src/libshogun/preproc/RandomFourierGaussPreproc.h
| | | | | | | | D	src/libshogun/preproc/SimplePreProc.h
| | | | | | | | D	src/libshogun/preproc/SortUlongString.cpp
| | | | | | | | D	src/libshogun/preproc/SortUlongString.h
| | | | | | | | D	src/libshogun/preproc/SortWordString.cpp
| | | | | | | | D	src/libshogun/preproc/SortWordString.h
| | | | | | | | D	src/libshogun/preproc/SparsePreProc.h
| | | | | | | | D	src/libshogun/preproc/StringPreProc.h
| | | | | | | | A	src/libshogun/preprocessor/DecompressString.h
| | | | | | | | A	src/libshogun/preprocessor/KernelPCACut.cpp
| | | | | | | | A	src/libshogun/preprocessor/KernelPCACut.h
| | | | | | | | A	src/libshogun/preprocessor/LogPlusOne.cpp
| | | | | | | | A	src/libshogun/preprocessor/LogPlusOne.h
| | | | | | | | A	src/libshogun/preprocessor/NormDerivativeLem3.cpp
| | | | | | | | A	src/libshogun/preprocessor/NormDerivativeLem3.h
| | | | | | | | A	src/libshogun/preprocessor/NormOne.cpp
| | | | | | | | A	src/libshogun/preprocessor/NormOne.h
| | | | | | | | A	src/libshogun/preprocessor/PCACut.cpp
| | | | | | | | A	src/libshogun/preprocessor/PCACut.h
| | | | | | | | A	src/libshogun/preprocessor/Preprocessor.cpp
| | | | | | | | A	src/libshogun/preprocessor/Preprocessor.h
| | | | | | | | A	src/libshogun/preprocessor/PruneVarSubMean.cpp
| | | | | | | | A	src/libshogun/preprocessor/PruneVarSubMean.h
| | | | | | | | A	src/libshogun/preprocessor/RandomFourierGaussPreproc.cpp
| | | | | | | | A	src/libshogun/preprocessor/RandomFourierGaussPreproc.h
| | | | | | | | A	src/libshogun/preprocessor/SimplePreprocessor.h
| | | | | | | | A	src/libshogun/preprocessor/SortUlongString.cpp
| | | | | | | | A	src/libshogun/preprocessor/SortUlongString.h
| | | | | | | | A	src/libshogun/preprocessor/SortWordString.cpp
| | | | | | | | A	src/libshogun/preprocessor/SortWordString.h
| | | | | | | | A	src/libshogun/preprocessor/SparsePreprocessor.h
| | | | | | | | A	src/libshogun/preprocessor/StringPreprocessor.h
| | | | | | | | D	src/libshogunui/GUIPreProc.cpp
| | | | | | | | D	src/libshogunui/GUIPreProc.h
| | | | | | | | A	src/libshogunui/GUIPreprocessor.cpp
| | | | | | | | A	src/libshogunui/GUIPreprocessor.h
| | | | | | | | M	src/libshogunui/SGInterface.cpp
| | | | | | | | M	src/libshogunui/SGInterface.h
| | | | | | | | M	src/lua_modular/shogun.lua
| | | | | | | | D	src/modular/PreProc.doxy
| | | | | | | | D	src/modular/PreProc.i
| | | | | | | | A	src/modular/Preprocessor.doxy
| | | | | | | | A	src/modular/Preprocessor.i
| | | | | | | |         
| | * | | | | | commit 8381b60fe9d2cf004c019c943e711837b4ea6f7e
| | | |_|_|_|/  Author: Soeren Sonnenburg <sonne@debian.org>
| | |/| | | |   Date:   Sat May 28 00:05:56 2011 +0200
| | | | | | |   
| | | | | | |       at least on debian based systems ruby libs are named libruby<VER>*.so*
| | | | | | |   
| | | | | | |   M	src/configure
| | | | | | |          
| | * | | | |   commit 02cc0f97880d3c5a405dc43abe08421ac2c4897e
| | |\ \ \ \ \  Merge: e3e7978 355fd30
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Wed May 25 22:45:48 2011 +0200
| | | | | | | | 
| | | | | | | |     Merge branch 'master' of git://github.com/serialhex/shogun
| | | | | | | |         
| | | * | | | | commit 355fd30767ba2fb204e18408febd47c070d0e6b6
| | | | | | | | Author: Justin Patera <serialhex@gmail.com>
| | | | | | | | Date:   Wed May 25 16:42:14 2011 -0400
| | | | | | | | 
| | | | | | | |     updated configure script to work with ruby 1.8 & 1.9
| | | | | | | | 
| | | | | | | | M	src/configure
| | | | | | | |           
| | * | | | | |   commit e3e79789fd93c608800e27dd2677cc0c2b6f6991
| | |\ \ \ \ \ \  Merge: 0156394 bdcddac
| | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | Date:   Wed May 25 22:39:51 2011 +0200
| | | | | | | | | 
| | | | | | | | |     Merge branch 'patch-1' of git://github.com/dmkorn/shogun
| | | | | | | | |          
| | | * | | | | | commit bdcddace3af71b4cdf472a896ba97ff14e3f03e1
| | | | | | | | | Author: dmkorn <daniel.m.korn@gmail.com>
| | | | | | | | | Date:   Wed May 25 11:29:32 2011 -0700
| | | | | | | | | 
| | | | | | | | |     This is still not complete, more typemaps need to be written and run time testing needs to be performed.  However, this compiles through with no errors.
| | | | | | | | | 
| | | | | | | | | M	src/csharp_modular/swig_typemaps.i
| | | | | | | | |          
| | * | | | | | | commit 015639441752a98d5caa1e897d68e068cb221fc9
| | | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | | Date:   Wed May 25 19:41:45 2011 +0800
| | | | | | | | | 
| | | | | | | | |     fix new SGTYPE() issue for java
| | | | | | | | | 
| | | | | | | | | M	src/java_modular/swig_typemaps.i
| | | | | | | | |          
| | * | | | | | | commit e2f4a6031aa961bb4218c6f0a10804d084c3d947
| | | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | | Date:   Wed May 25 19:39:53 2011 +0800
| | | | | | | | | 
| | | | | | | | |     fix new SGTYPE() issue
| | | | | | | | | 
| | | | | | | | | M	src/lua_modular/swig_typemaps.i
| | | | | | | | |          
| | * | | | | | | commit d7f7604601a7692095cce35203f00dd8a8d659cb
| | | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | | Date:   Wed May 25 19:38:31 2011 +0800
| | | | | | | | | 
| | | | | | | | |     add stringlist support for ruby
| | | | | | | | | 
| | | | | | | | | M	src/ruby_modular/swig_typemaps.i
| | | | | | | | |          
| | * | | | | | | commit 5ba04f7394bbb9ea226d3a6a47044beb762e3681
| | | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | | Date:   Wed May 25 15:44:34 2011 +0800
| | | | | | | | | 
| | | | | | | | |     add setArrayRegion statement in stringlist typemap
| | | | | | | | | 
| | | | | | | | | M	src/java_modular/swig_typemaps.i
| | | | | | | | |          
| | * | | | | | | commit 38c376626873ab359521155d6248ff1dfdafcc41
| | | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | | Date:   Wed May 25 15:36:53 2011 +0800
| | | | | | | | | 
| | | | | | | | |     add stringlist support
| | | | | | | | | 
| | | | | | | | | M	src/lua_modular/swig_typemaps.i
| | | | | | | | |          
| | * | | | | | | commit 9585b7f45294f18c8332071fb036893221a95d6b
| | |/ / / / / /  Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | |   Date:   Wed May 25 14:04:24 2011 +0800
| | | | | | | |   
| | | | | | | |       add lua SGVector/SGMatrix support
| | | | | | | |   
| | | | | | | |   M	src/lua_modular/swig_typemaps.i
| | | | | | | |           
| * | | | | | |   commit 14b5e06445ead9670bf65b5449aac93039754808
| |\ \ \ \ \ \ \  Merge: b9e4f84 ba381a2
| | |/ / / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | |   Date:   Tue May 24 10:21:24 2011 +0200
| | | | | | | |   
| | | | | | | |       Merge remote branch 'upstream/master'
| | | | | | | |         
| | * | | | | | commit ba381a2a0fe10cd8af3065199d513a8bf244d2d7
| | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | Date:   Mon May 23 19:45:10 2011 +0800
| | | | | | | | 
| | | | | | | |     remove init_shogun/exit_shogun
| | | | | | | | 
| | | | | | | | M	examples/undocumented/ruby_modular/MatrixTest.rb
| | | | | | | | M	examples/undocumented/ruby_modular/VectorTest.rb
| | | | | | | |         
| | * | | | | | commit 386b0cda1781e5295c801af921a19c077030eea4
| | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | Date:   Mon May 23 14:42:25 2011 +0800
| | | | | | | | 
| | | | | | | |     add ruby matrix typemap support
| | | | | | | | 
| | | | | | | | A	examples/undocumented/ruby_modular/MatrixTest.rb
| | | | | | | | M	src/ruby_modular/swig_typemaps.i
| | | | | | | |         
| | * | | | | | commit 2341f5fc12f2382f17ffba8cf907ec441f9ef177
| | |/ / / / /  Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | |   Date:   Mon May 23 14:07:40 2011 +0800
| | | | | | |   
| | | | | | |       add ruby vector typemap support
| | | | | | |   
| | | | | | |   A	examples/undocumented/ruby_modular/VectorTest.rb
| | | | | | |   M	src/ruby_modular/swig_typemaps.i
| | | | | | |          
| * | | | | |   commit b9e4f844516476cfa87ec73eb19d8ccd3eb510f5
| |\ \ \ \ \ \  Merge: 9e985b3 1a6d572
| | |/ / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | |   Date:   Mon May 23 09:26:36 2011 +0200
| | | | | | |   
| | | | | | |       Merge remote branch 'upstream/master'
| | | | | | |        
| | * | | | | commit 1a6d572aa8b59301ab257cdb0985c2cd0a78e423
| | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | Date:   Sat May 21 21:04:15 2011 +0800
| | | | | | | 
| | | | | | |     add java typemaps for SGStringList
| | | | | | | 
| | | | | | | M	src/java_modular/swig_typemaps.i
| | | | | | |          
| | * | | | |   commit 81c627faba4d40a9f5fdb11dfc42c836bc9387a5
| | |\ \ \ \ \  Merge: 78e43f6 21d77b5
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Thu May 19 23:11:36 2011 +0200
| | | | | | | | 
| | | | | | | |     Merge branch 'master' of git://github.com/SergeyLisitsyn/shogun
| | | | | | | |         
| | | * | | | | commit 21d77b5878ddd1e9fe2c0e79143c614574693159
| | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | Date:   Fri May 20 01:09:38 2011 +0400
| | | | | | | | 
| | | | | | | |     Added random seed
| | | | | | | | 
| | | | | | | | M	examples/undocumented/python_modular/evaluation_contingencytableevaluation_modular.py
| | | | | | | | M	examples/undocumented/python_modular/evaluation_meansquarederror_modular.py
| | | | | | | | M	examples/undocumented/python_modular/evaluation_multiclassaccuracy_modular.py
| | | | | | | | M	examples/undocumented/python_modular/evaluation_prcevaluation_modular.py
| | | | | | | | M	examples/undocumented/python_modular/evaluation_rocevaluation_modular.py
| | | | | | | |           
| | | * | | | |   commit e84118151e5b70518b4cc9b3491860bbf53abc7a
| | | |\ \ \ \ \  Merge: c209dd5 c852a03
| | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | Date:   Fri May 20 00:27:42 2011 +0400
| | | | | | | | | 
| | | | | | | | |     Merge remote branch 'upstream/master'
| | | | | | | | |          
| | | * | | | | | commit c209dd5b0bbff2ddf6097861f36e54f6c4a06c59
| | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | Date:   Fri May 20 00:16:56 2011 +0400
| | | | | | | | | 
| | | | | | | | |     Added testsuite for evaluation classes
| | | | | | | | | 
| | | | | | | | | A	examples/undocumented/python_modular/evaluation_contingencytableevaluation_modular.py
| | | | | | | | | A	examples/undocumented/python_modular/evaluation_meansquarederror_modular.py
| | | | | | | | | A	examples/undocumented/python_modular/evaluation_multiclassaccuracy_modular.py
| | | | | | | | | A	examples/undocumented/python_modular/evaluation_prcevaluation_modular.py
| | | | | | | | | A	examples/undocumented/python_modular/evaluation_rocevaluation_modular.py
| | | | | | | | |            
| | | * | | | | |   commit 69aa7716fd77ccf81e13807a43871634be496f07
| | | |\ \ \ \ \ \  Merge: 3bec041 4c16c19
| | | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | | Date:   Thu May 19 23:08:24 2011 +0400
| | | | | | | | | | 
| | | | | | | | | |     Merge remote branch 'upstream/master'
| | | | | | | | | |           
| | * | | | | | | | commit 78e43f62a08474c7fd2f5c3cfbfba2465b46436f
| | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | Date:   Thu May 19 23:11:23 2011 +0200
| | | | | | | | | | 
| | | | | | | | | |     add in and out typemaps for SGStringList
| | | | | | | | | | 
| | | | | | | | | | M	src/python_modular/swig_typemaps.i
| | | | | | | | | |           
| | * | | | | | | | commit 6a4c98e3c74b07edab3700cb9b75122afb16188d
| | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | Date:   Thu May 19 23:11:00 2011 +0200
| | | | | | | | | | 
| | | | | | | | | |     Introduce SGSparseMatrix based set/get functions
| | | | | | | | | | 
| | | | | | | | | | M	src/libshogun/features/SparseFeatures.h
| | | | | | | | | |           
| | * | | | | | | | commit 55cc5cd612f1c01680882bc840f81e4799fd4be4
| | | |_|/ / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |/| | | | | |   Date:   Thu May 19 23:10:33 2011 +0200
| | | | | | | | |   
| | | | | | | | |       Introduce SGStringList based set/get functions
| | | | | | | | |   
| | | | | | | | |   M	src/libshogun/features/StringFeatures.h
| | | | | | | | |            
| | * | | | | | |   commit c852a03badb7b181e74fe56dd38ad93f883a64bb
| | |\ \ \ \ \ \ \  Merge: 064cdc5 2fc9b9e
| | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | Date:   Thu May 19 21:44:42 2011 +0200
| | | | | | | | | | 
| | | | | | | | | |     Merge branch 'master' of git://github.com/sploving/shogun
| | | | | | | | | |     
| | | | | | | | | |     Conflicts:
| | | | | | | | | |     	src/java_modular/swig_typemaps.i
| | | | | | | | | |           
| | | * | | | | | | commit 2fc9b9e6e35ccd95a841c905a130a691a99d00e9
| | | | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | | | Date:   Thu May 19 20:21:26 2011 +0800
| | | | | | | | | | 
| | | | | | | | | |     support jblas matrix
| | | | | | | | | | 
| | | | | | | | | | A	examples/undocumented/java_modular/MatrixTest.java
| | | | | | | | | | M	src/java_modular/swig_typemaps.i
| | | | | | | | | |             
| | * | | | | | | |   commit 064cdc5546344a5099e1552be0c62040d92f5ad2
| | |\ \ \ \ \ \ \ \  Merge: 4c16c19 3bec041
| | | | |/ / / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |/| / / / / /   Date:   Thu May 19 21:28:06 2011 +0200
| | | |_|/ / / / /    
| | |/| | | | | |         Merge branch 'master' of git://github.com/SergeyLisitsyn/shogun
| | | | | | | | |          
| | | * | | | | | commit 3bec041f64500de4c361bfd4bee6aacd310ab4cc
| | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | Date:   Thu May 19 22:18:07 2011 +0400
| | | | | | | | | 
| | | | | | | | |     Added graphical examples for PRC and ROC
| | | | | | | | | 
| | | | | | | | | A	examples/undocumented/python_modular/graphical/prc.py
| | | | | | | | | A	examples/undocumented/python_modular/graphical/roc.py
| | | | | | | | |          
| * | | | | | | | commit 9e985b36daac244ffb1c77259253a8bec708eb2a
| |/ / / / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | |   Date:   Thu May 19 13:48:15 2011 +0200
| | | | | | | |   
| | | | | | | |       updated copyright
| | | | | | | |   
| | | | | | | |   M	examples/undocumented/libshogun/parameter_iterate_float64.cpp
| | | | | | | |   M	examples/undocumented/libshogun/parameter_iterate_sgobject.cpp
| | | | | | | |   M	examples/undocumented/libshogun/parameter_set_from_parameters.cpp
| | | | | | | |   M	src/libshogun/kernel/DistantSegmentsKernel.cpp
| | | | | | | |   M	src/libshogun/kernel/DistantSegmentsKernel.h
| | | | | | | |         
| * | | | | | | commit 4c16c1989f86f3d84d4fd1e165aac86ff5f7bfd3
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Thu May 19 00:23:50 2011 +0200
| | | | | | | | 
| | | | | | | |     introduce SG_UNREF_NOT_NULL to compilation error
| | | | | | | | 
| | | | | | | | M	src/libshogun/base/SGObject.h
| | | | | | | | M	src/libshogun/features/AttributeFeatures.cpp
| | | | | | | |         
| * | | | | | | commit ddf2879692d8b62a603bb2571c6eb70fbcd6a790
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Thu May 19 00:17:54 2011 +0200
| | | | | | | | 
| | | | | | | |     Revert "potentially fix a gcc 4.6 compilation error"
| | | | | | | |     
| | | | | | | |     This reverts commit 0fe924eca47c3ff5f7c88cac489c2850011d4aec.
| | | | | | | | 
| | | | | | | | M	src/libshogun/base/SGObject.h
| | | | | | | |         
| * | | | | | | commit 0fe924eca47c3ff5f7c88cac489c2850011d4aec
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Wed May 18 21:24:32 2011 +0200
| | | | | | | | 
| | | | | | | |     potentially fix a gcc 4.6 compilation error
| | | | | | | | 
| | | | | | | | M	src/libshogun/base/SGObject.h
| | | | | | | |           
| * | | | | | |   commit 96dc253b8a6f0db79e0bdc836da7021c6ccd1f7f
| |\ \ \ \ \ \ \  Merge: dffdda0 cac23b3
| | | |/ / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |/| | | | |   Date:   Wed May 18 11:13:02 2011 +0200
| | | | | | | |   
| | | | | | | |       Merge branch 'master' of git://github.com/sploving/shogun
| | | | | | | |         
| | * | | | | | commit cac23b3d7ac05e7bc10d937e1e7e59ae156f3188
| | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | Date:   Wed May 18 16:53:53 2011 +0800
| | | | | | | | 
| | | | | | | |     remove the jblas classpth
| | | | | | | | 
| | | | | | | | M	src/java_modular/build.xml
| | | | | | | |         
| | * | | | | | commit da5ef189d9f209846d2b1f860f2652fc87b8522b
| | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | Date:   Wed May 18 16:15:51 2011 +0800
| | | | | | | | 
| | | | | | | |     add jblas classpath
| | | | | | | | 
| | | | | | | | M	src/java_modular/build.xml
| | | | | | | |         
| | * | | | | | commit c88eb49c36e94963a993fd27e49ad0c45485cbf8
| | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | Date:   Wed May 18 15:28:10 2011 +0800
| | | | | | | | 
| | | | | | | |     put the examples into the undocumented/java_modular
| | | | | | | | 
| | | | | | | | A	examples/undocumented/java_modular/VectorTest.java
| | | | | | | | A	examples/undocumented/java_modular/minimal_test.java
| | | | | | | | M	src/java_modular/build.xml
| | | | | | | | D	src/java_modular/shogun/examples/VectorTest.java
| | | | | | | | D	src/java_modular/shogun/examples/minimal_test.java
| | | | | | | |         
| * | | | | | | commit dffdda0ea376967aaf8af269428eca324c6b60ec
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Tue May 17 21:44:21 2011 +0200
| | | | | | | | 
| | | | | | | |     disable matrix typemaps for now - these should be based on jblas/ujmp
| | | | | | | |     later on.
| | | | | | | | 
| | | | | | | | M	src/java_modular/swig_typemaps.i
| | | | | | | |           
| * | | | | | |   commit 5145468e30337f0a72bd7ade8c7d183f537db0bf
| |\ \ \ \ \ \ \  Merge: 19e72c1 9881d16
| | |/ / / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | |   Date:   Tue May 17 21:27:17 2011 +0200
| | | | | | | |   
| | | | | | | |       Merge branch 'master' of git://github.com/sploving/shogun
| | | | | | | |         
| | * | | | | | commit 9881d163683af54f7ebc0945218486c41e1a6988
| | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | Date:   Tue May 17 21:37:52 2011 +0800
| | | | | | | | 
| | | | | | | |     add SGMatrix support in java typemaps
| | | | | | | | 
| | | | | | | | M	src/java_modular/swig_typemaps.i
| | | | | | | |         
| | * | | | | | commit 93dcf2d8fa34edcf9f2d28a6ce83172a23f819bb
| | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | Date:   Tue May 17 19:50:22 2011 +0800
| | | | | | | | 
| | | | | | | |     add get/set vector in/out typemap for java
| | | | | | | | 
| | | | | | | | M	src/java_modular/shogun/examples/VectorTest.java
| | | | | | | | M	src/java_modular/swig_typemaps.i
| | | | | | | |         
| * | | | | | | commit 19e72c1aebd76c7c2c55f1a38743760971f6713e
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Tue May 17 14:25:44 2011 +0200
| | | | | | | | 
| | | | | | | |     renamed new SGVector/SGMatirx based add_matrix(...) and add_vector(...) methods to add(...)
| | | | | | | | 
| | | | | | | | M	src/libshogun/base/Parameter.cpp
| | | | | | | | M	src/libshogun/base/Parameter.h
| | | | | | | |           
| * | | | | | |   commit 8d63904dae86d11a365417ba0a37d40f13968510
| |\ \ \ \ \ \ \  Merge: 836aaf8 063c4a8
| | |/ / / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | |   Date:   Tue May 17 14:21:04 2011 +0200
| | | | | | | |   
| | | | | | | |       Merge remote branch 'upstream/master'
| | | | | | | |         
| | * | | | | | commit 063c4a8ec6d9748a7d8325587f6b54809dbad5d3
| | |/ / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | |   Date:   Mon May 16 20:21:29 2011 +0200
| | | | | | |   
| | | | | | |       move soon to be obsolete typemaps at the bottom
| | | | | | |   
| | | | | | |   M	src/python_modular/swig_typemaps.i
| | | | | | |        
| * | | | | | commit 836aaf8b44d8ec62284258461e0939a4b2cd33bb
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Mon May 16 18:49:41 2011 +0200
| | | | | | | 
| | | | | | |     cleaned up includes
| | | | | | | 
| | | | | | | M	examples/undocumented/libshogun/parameter_iterate_float64.cpp
| | | | | | | M	examples/undocumented/libshogun/parameter_iterate_sgobject.cpp
| | | | | | |        
| * | | | | | commit 40f1de6bd44a29f33487f859b102a487f93249ff
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Mon May 16 18:00:09 2011 +0200
| | | | | | | 
| | | | | | |     added example which uses set_from_paramters to set different kernels of a SVM
| | | | | | | 
| | | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | | | A	examples/undocumented/libshogun/parameter_iterate_sgobject.cpp
| | | | | | |        
| * | | | | | commit c4909de4fa4cd997a2c73b2c87d04bb14ff18247
| |/ / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | |   Date:   Mon May 16 13:15:47 2011 +0200
| | | | | |   
| | | | | |       added add() type wrappers for SGVector and SGMatrix
| | | | | |   
| | | | | |   M	src/libshogun/base/Parameter.cpp
| | | | | |   M	src/libshogun/base/Parameter.h
| | | | | |       
* | | | | | commit 37095f393aed251192c9eb120fd1f4484c5b2969
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Wed May 25 12:12:01 2011 +0400
| | | | | | 
| | | | | |     Added some more routines to MDS and added MDS to modular
| | | | | | 
| | | | | | M	src/libshogun/preproc/ClassicMDS.cpp
| | | | | | M	src/modular/PreProc.i
| | | | | |       
* | | | | | commit 9979faaf81162d347ace354787c6025efce6bd68
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Tue May 24 13:37:12 2011 +0400
| | | | | | 
| | | | | |     Some draft of first stage of MDS
| | | | | | 
| | | | | | A	src/libshogun/preproc/ClassicMDS.cpp
| | | | | | A	src/libshogun/preproc/ClassicMDS.h
| | | | | | D	src/libshogun/preproc/MDS.cpp
| | | | | | D	src/libshogun/preproc/MDS.h
| | | | | |       
* | | | | | commit 3992ac434cfb1fe250e4c63c364c38f6ea61ab35
|/ / / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | |   Date:   Mon May 16 16:20:37 2011 +0400
| | | | |   
| | | | |       Added draft of MDS
| | | | |   
| | | | |   A	src/libshogun/preproc/MDS.cpp
| | | | |   A	src/libshogun/preproc/MDS.h
| | | | |      
* | | | | commit 7b958bfd6f1ec03f21c0663479c52afd68a3bbe4
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Sat May 14 23:24:11 2011 +0200
| | | | | 
| | | | |     rename sparse matrix to sparse vector and introduce sparse matrix
| | | | |     structure and string list structure
| | | | | 
| | | | | M	src/cmdline/CmdLineInterface.cpp
| | | | | M	src/cmdline/CmdLineInterface.h
| | | | | M	src/libshogun/base/Parameter.cpp
| | | | | M	src/libshogun/base/Parameter.h
| | | | | M	src/libshogun/classifier/LPBoost.cpp
| | | | | M	src/libshogun/classifier/LPBoost.h
| | | | | M	src/libshogun/features/SparseFeatures.h
| | | | | M	src/libshogun/features/SparsePolyFeatures.cpp
| | | | | M	src/libshogun/features/SparsePolyFeatures.h
| | | | | M	src/libshogun/lib/AsciiFile.cpp
| | | | | M	src/libshogun/lib/AsciiFile.h
| | | | | M	src/libshogun/lib/BinaryFile.cpp
| | | | | M	src/libshogun/lib/BinaryFile.h
| | | | | M	src/libshogun/lib/Cplex.cpp
| | | | | M	src/libshogun/lib/Cplex.h
| | | | | M	src/libshogun/lib/DataType.cpp
| | | | | M	src/libshogun/lib/DataType.h
| | | | | M	src/libshogun/lib/File.h
| | | | | M	src/libshogun/lib/HDF5File.cpp
| | | | | M	src/libshogun/lib/HDF5File.h
| | | | | M	src/libshogun/lib/LibSVMFile.h
| | | | | M	src/libshogun/lib/SerializableAsciiFile.cpp
| | | | | M	src/libshogun/lib/SerializableAsciiFile.h
| | | | | M	src/libshogun/lib/SerializableAsciiReader00.cpp
| | | | | M	src/libshogun/lib/SerializableAsciiReader00.h
| | | | | M	src/libshogun/lib/SerializableFile.cpp
| | | | | M	src/libshogun/lib/SerializableFile.h
| | | | | M	src/libshogun/lib/SerializableHdf5File.cpp
| | | | | M	src/libshogun/lib/SerializableHdf5File.h
| | | | | M	src/libshogun/lib/SerializableHdf5Reader00.cpp
| | | | | M	src/libshogun/lib/SerializableHdf5Reader00.h
| | | | | M	src/libshogun/lib/SerializableJsonFile.cpp
| | | | | M	src/libshogun/lib/SerializableJsonFile.h
| | | | | M	src/libshogun/lib/SerializableJsonReader00.cpp
| | | | | M	src/libshogun/lib/SerializableJsonReader00.h
| | | | | M	src/libshogun/lib/SerializableXmlFile.cpp
| | | | | M	src/libshogun/lib/SerializableXmlFile.h
| | | | | M	src/libshogun/lib/SerializableXmlReader00.cpp
| | | | | M	src/libshogun/lib/SerializableXmlReader00.h
| | | | | M	src/libshogun/lib/StreamingFile.cpp
| | | | | M	src/libshogun/lib/StreamingFile.h
| | | | | M	src/libshogun/preproc/SparsePreProc.h
| | | | | M	src/libshogunui/GUIStructure.h
| | | | | M	src/libshogunui/SGInterface.cpp
| | | | | M	src/libshogunui/SGInterface.h
| | | | | M	src/matlab/MatlabInterface.cpp
| | | | | M	src/matlab/MatlabInterface.h
| | | | | M	src/modular/Features.i
| | | | | M	src/modular/SGBase.i
| | | | | M	src/octave/OctaveInterface.cpp
| | | | | M	src/octave/OctaveInterface.h
| | | | | M	src/octave_modular/swig_typemaps.i
| | | | | M	src/python/PythonInterface.cpp
| | | | | M	src/python/PythonInterface.h
| | | | | M	src/python_modular/swig_typemaps.i
| | | | | M	src/r/RInterface.cpp
| | | | | M	src/r/RInterface.h
| | | | |      
* | | | | commit b9d67bb60e4d30f7aec05c5463c6992d7ac30adb
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Sat May 14 22:36:29 2011 +0200
| | | | | 
| | | | |     add SGMatrix support in python typemaps
| | | | | 
| | | | | M	src/libshogun/features/SimpleFeatures.h
| | | | | M	src/libshogun/lib/DataType.h
| | | | | M	src/modular/Features.i
| | | | | M	src/modular/SGBase.i
| | | | | M	src/python_modular/swig_typemaps.i
| | | | |      
* | | | | commit 29dfea96f02deb7d190b86c267afd982072b64fc
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Fri May 13 16:16:06 2011 +0200
| | | | | 
| | | | |     add get/set vector in/out typemap for python
| | | | | 
| | | | | M	src/libshogun/features/Labels.h
| | | | | M	src/libshogun/lib/DataType.h
| | | | | M	src/python_modular/swig_typemaps.i
| | | | |        
* | | | |   commit ec3229570563742516a1fb8f8d5231a8fe52a66d
|\ \ \ \ \  Merge: a7c1e48 5bc70da
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Fri May 13 10:45:41 2011 +0200
| | | | | | 
| | | | | |     Merge branch 'master' of git://github.com/karlnapf/shogun
| | | | | |       
| * | | | | commit 5bc70da7d488b29fe8d6b9e5878b4c7f755e500c
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri May 13 10:36:42 2011 +0200
| | | | | | 
| | | | | |     added parameter iteration example
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | |       
| * | | | | commit ffeca12819b88a8a71af040880598a7493b55d91
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri May 13 10:36:15 2011 +0200
| | | | | | 
| | | | | |     added copyright
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/parameter_set_from_parameters.cpp
| | | | | |       
| * | | | | commit 764d28dc0abd817ea7e5a40f85527b768c69214b
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri May 13 10:35:28 2011 +0200
| | | | | | 
| | | | | |     remove redundant save/load for model selection parameters
| | | | | | 
| | | | | | M	src/libshogun/base/SGObject.cpp
| | | | | |       
| * | | | | commit 022633b37aa7d0413bf56601426fd2c54e0f0ac1
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu May 12 18:57:31 2011 +0200
| | | | | | 
| | | | | |     added libshogun example for iterating over a float64_t parameter of a kernel, namely kernel width of the GaussianKernel
| | | | | | 
| | | | | | A	examples/undocumented/libshogun/parameter_iterate_float64.cpp
| | | | | |       
| * | | | | commit 9205c4bdc6384647dc10cae6f1ee242d19ba29c6
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu May 12 13:05:55 2011 +0200
| | | | | | 
| | | | | |     changed the registration of parameters to use the newly added macros
| | | | | | 
| | | | | | M	src/libshogun/kernel/GaussianKernel.cpp
| | | | | |       
| * | | | | commit eb2cc5c9b9ffb85f12c801e76196d11de5412e4b
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu May 12 13:02:43 2011 +0200
| | | | | | 
| | | | | |     added macros for registering parameters (possibly also for model selection)
| | | | | | 
| | | | | | M	src/libshogun/base/SGObject.cpp
| | | | | | M	src/libshogun/base/SGObject.h
| | | | | |       
* | | | | | commit a7c1e48fa55f818166cef7a63b585254f0d6743a
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Fri May 13 10:44:36 2011 +0200
| | | | | | 
| | | | | |     introduce set_labels based on SGVector<float64_t> data type
| | | | | | 
| | | | | | M	src/libshogun/features/Labels.h
| | | | | |       
* | | | | | commit 88994f7b41c67d2cb5da8caf9905b33902845f57
|/ / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | |   Date:   Fri May 13 10:35:18 2011 +0200
| | | | |   
| | | | |       Introduce SGVector, SGMatrix, SGString, SGSparseMatrix data types.
| | | | |       
| | | | |       And add a get_labels() function for SGVector testing.
| | | | |   
| | | | |   M	src/cmdline/CmdLineInterface.cpp
| | | | |   M	src/cmdline/CmdLineInterface.h
| | | | |   M	src/libshogun/base/Parameter.cpp
| | | | |   M	src/libshogun/base/Parameter.h
| | | | |   M	src/libshogun/classifier/LPBoost.cpp
| | | | |   M	src/libshogun/classifier/LPBoost.h
| | | | |   M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| | | | |   M	src/libshogun/features/HashedWDFeaturesTransposed.h
| | | | |   M	src/libshogun/features/Labels.h
| | | | |   M	src/libshogun/features/SparseFeatures.h
| | | | |   M	src/libshogun/features/SparsePolyFeatures.cpp
| | | | |   M	src/libshogun/features/SparsePolyFeatures.h
| | | | |   M	src/libshogun/features/StringFeatures.h
| | | | |   M	src/libshogun/features/StringFileFeatures.h
| | | | |   M	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
| | | | |   M	src/libshogun/kernel/SpectrumMismatchRBFKernel.cpp
| | | | |   M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| | | | |   M	src/libshogun/kernel/SpectrumRBFKernel.h
| | | | |   M	src/libshogun/lib/AsciiFile.cpp
| | | | |   M	src/libshogun/lib/AsciiFile.h
| | | | |   M	src/libshogun/lib/BinaryFile.cpp
| | | | |   M	src/libshogun/lib/BinaryFile.h
| | | | |   M	src/libshogun/lib/Cplex.cpp
| | | | |   M	src/libshogun/lib/Cplex.h
| | | | |   M	src/libshogun/lib/DataType.cpp
| | | | |   M	src/libshogun/lib/DataType.h
| | | | |   M	src/libshogun/lib/File.cpp
| | | | |   M	src/libshogun/lib/File.h
| | | | |   M	src/libshogun/lib/HDF5File.cpp
| | | | |   M	src/libshogun/lib/HDF5File.h
| | | | |   M	src/libshogun/lib/LibSVMFile.h
| | | | |   M	src/libshogun/lib/SerializableAsciiFile.cpp
| | | | |   M	src/libshogun/lib/SerializableAsciiFile.h
| | | | |   M	src/libshogun/lib/SerializableAsciiReader00.cpp
| | | | |   M	src/libshogun/lib/SerializableAsciiReader00.h
| | | | |   M	src/libshogun/lib/SerializableFile.cpp
| | | | |   M	src/libshogun/lib/SerializableFile.h
| | | | |   M	src/libshogun/lib/SerializableHdf5File.cpp
| | | | |   M	src/libshogun/lib/SerializableHdf5File.h
| | | | |   M	src/libshogun/lib/SerializableHdf5Reader00.cpp
| | | | |   M	src/libshogun/lib/SerializableHdf5Reader00.h
| | | | |   M	src/libshogun/lib/SerializableJsonFile.cpp
| | | | |   M	src/libshogun/lib/SerializableJsonFile.h
| | | | |   M	src/libshogun/lib/SerializableJsonReader00.cpp
| | | | |   M	src/libshogun/lib/SerializableJsonReader00.h
| | | | |   M	src/libshogun/lib/SerializableXmlFile.cpp
| | | | |   M	src/libshogun/lib/SerializableXmlFile.h
| | | | |   M	src/libshogun/lib/SerializableXmlReader00.cpp
| | | | |   M	src/libshogun/lib/SerializableXmlReader00.h
| | | | |   M	src/libshogun/lib/StreamingFile.cpp
| | | | |   M	src/libshogun/lib/StreamingFile.h
| | | | |   M	src/libshogun/preproc/SparsePreProc.h
| | | | |   M	src/libshogun/structure/PlifMatrix.cpp
| | | | |   M	src/libshogun/structure/PlifMatrix.h
| | | | |   M	src/libshogunui/GUIFeatures.cpp
| | | | |   M	src/libshogunui/GUIStructure.h
| | | | |   M	src/libshogunui/SGInterface.cpp
| | | | |   M	src/libshogunui/SGInterface.h
| | | | |   M	src/matlab/MatlabInterface.cpp
| | | | |   M	src/matlab/MatlabInterface.h
| | | | |   M	src/modular/Features.i
| | | | |   M	src/modular/Structure.i
| | | | |   M	src/octave/OctaveInterface.cpp
| | | | |   M	src/octave/OctaveInterface.h
| | | | |   M	src/octave_modular/swig_typemaps.i
| | | | |   M	src/python/PythonInterface.cpp
| | | | |   M	src/python/PythonInterface.h
| | | | |   M	src/python_modular/swig_typemaps.i
| | | | |   M	src/r/RInterface.cpp
| | | | |   M	src/r/RInterface.h
| | | | |   M	src/r_modular/swig_typemaps.i
| | | | |      
* | | | | commit c29d4e95736b3845c1c45d1efda3a7f4725d2e4c
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed May 11 14:29:00 2011 +0200
| | | | | 
| | | | |     added  exit_shogun.
| | | | | 
| | | | | M	examples/undocumented/libshogun/parameter_set_from_parameters.cpp
| | | | |      
* | | | | commit f9bdf3b21b5a7d6c45e2e91e72505e9239f15c6e
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed May 11 14:14:08 2011 +0200
| | | | | 
| | | | |     coding style
| | | | | 
| | | | | M	examples/undocumented/libshogun/parameter_set_from_parameters.cpp
| | | | | M	src/libshogun/base/Parameter.cpp
| | | | |        
* | | | |   commit 6ab02271c636e998a0431b6cc485ebb1292d16d7
|\ \ \ \ \  Merge: 4c8bb0f ef8e476
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed May 11 13:47:47 2011 +0200
| | | | | | 
| | | | | |     Merge remote branch 'upstream/master'
| | | | | |         
| * | | | |   commit ef8e476e2d7aa0720e26e0aef566a18662a1749f
| |\ \ \ \ \  Merge: a996050 40e3306
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Tue May 10 22:20:57 2011 +0200
| | | | | | | 
| | | | | | |     Merge branch 'master' of git://github.com/sploving/shogun
| | | | | | |        
| | * | | | | commit 40e3306bca246afaa00915a64693785a04ab71d8
| | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | Date:   Tue May 10 15:53:38 2011 +0800
| | | | | | | 
| | | | | | |     move compilation to classes directory, fixed path in the jar file
| | | | | | | 
| | | | | | | D	examples/undocumented/java_modular/minimal_test.java
| | | | | | | M	src/java_modular/build.xml
| | | | | | | A	src/java_modular/shogun/examples/minimal_test.java
| | | | | | |        
* | | | | | | commit 4c8bb0fb127dbdd6f47ebb4be5067a1dc5f2c036
| | | | | | | Author: heiko <heiko@user.(none)>
| | | | | | | Date:   Tue May 10 11:05:13 2011 +0200
| | | | | | | 
| | | | | | |     -code style changes
| | | | | | |     -usage of new instead of malloc
| | | | | | |     -cleaned includes
| | | | | | |     -usage of CMath::fill_vector
| | | | | | |     -added missing memory cleanup
| | | | | | |     -minor changes
| | | | | | | 
| | | | | | | M	examples/undocumented/libshogun/parameter_set_from_parameters.cpp
| | | | | | |        
* | | | | | | commit cec991f21e9b9cf1bd83a4c5c7161023df7c3efd
| | | | | | | Author: heiko <heiko@user.(none)>
| | | | | | | Date:   Tue May 10 10:25:58 2011 +0200
| | | | | | | 
| | | | | | |     removed random keyboard hit, sorry
| | | | | | | 
| | | | | | | M	src/libshogun/features/Features.cpp
| | | | | | |        
* | | | | | | commit f78ff9756a069fb60f71e9a4440673c4d05dabc8
| | | | | | | Author: heiko <heiko@user.(none)>
| | | | | | | Date:   Tue May 10 10:20:32 2011 +0200
| | | | | | | 
| | | | | | |     removed malloc success check due to new usage of SG_MALLOC
| | | | | | | 
| | | | | | | M	src/libshogun/features/Features.cpp
| | | | | | |          
* | | | | | |   commit 625becf07594f8db5b52e4d604bf5c6f9c6e8d1f
|\ \ \ \ \ \ \  Merge: 5861b28 a996050
| |/ / / / / /  Author: heiko <heiko@user.(none)>
| | | | | | |   Date:   Tue May 10 10:19:10 2011 +0200
| | | | | | |   
| | | | | | |       Merge remote branch 'upstream/master'
| | | | | | |        
| * | | | | | commit a996050d3f5f5cc76d5a12ce13800af8c486b181
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Mon May 9 21:29:52 2011 +0200
| | | | | | | 
| | | | | | |     draft definition for vector / matrix datatype
| | | | | | | 
| | | | | | | M	src/libshogun/lib/DataType.h
| | | | | | |        
* | | | | | | commit 5861b289e49a7427b7cd1268adb695c54dcdc0ea
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Mon May 9 19:48:33 2011 +0200
| | | | | | | 
| | | | | | |     Revert "changed in32_t type of all used indices for subset selection to index_t"
| | | | | | |     
| | | | | | |     This reverts commit d7f57e1fbe31f808bf47bf35f9e2427c2216454f.
| | | | | | |     
| | | | | | |     Conflicts:
| | | | | | |     
| | | | | | |     	src/libshogun/features/Features.cpp
| | | | | | | 
| | | | | | | M	src/libshogun/features/Features.cpp
| | | | | | | M	src/libshogun/features/Features.h
| | | | | | | M	src/libshogun/features/StringFeatures.h
| | | | | | |          
* | | | | | |   commit 63875d0da4200c2672010809d786a9f2adcf6b31
|\ \ \ \ \ \ \  Merge: 5af5c0a 6e92985
| |/ / / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | |   Date:   Mon May 9 19:45:26 2011 +0200
| | | | | | |   
| | | | | | |       Merge remote branch 'upstream/master'
| | | | | | |       
| | | | | | |       Conflicts:
| | | | | | |       	src/libshogun/features/Features.cpp
| | | | | | |        
| * | | | | | commit 6e9298532e6060468951dd65b79b8c7714b773b2
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Mon May 9 13:06:45 2011 +0200
| | | | | | | 
| | | | | | |     Convert all memory functions to use the SG_* ones.
| | | | | | | 
| | | | | | | M	src/libshogun/base/DynArray.h
| | | | | | | M	src/libshogun/base/Parameter.cpp
| | | | | | | M	src/libshogun/classifier/KNN.cpp
| | | | | | | M	src/libshogun/classifier/KernelMachine.h
| | | | | | | M	src/libshogun/classifier/LinearClassifier.h
| | | | | | | M	src/libshogun/classifier/svm/GPBTSVM.cpp
| | | | | | | M	src/libshogun/classifier/svm/LaRank.cpp
| | | | | | | M	src/libshogun/classifier/svm/LibLinear.cpp
| | | | | | | M	src/libshogun/classifier/svm/LibSVMOneClass.cpp
| | | | | | | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| | | | | | | M	src/libshogun/classifier/svm/SVM_linear.cpp
| | | | | | | M	src/libshogun/classifier/svm/ScatterSVM.cpp
| | | | | | | M	src/libshogun/classifier/svm/gpdt.cpp
| | | | | | | M	src/libshogun/classifier/svm/gpdtsolve.cpp
| | | | | | | M	src/libshogun/classifier/svm/gpm.cpp
| | | | | | | M	src/libshogun/classifier/svm/libocas.h
| | | | | | | M	src/libshogun/classifier/svm/libocas_common.h
| | | | | | | M	src/libshogun/classifier/svm/libqp.h
| | | | | | | M	src/libshogun/classifier/svm/pr_loqo.cpp
| | | | | | | M	src/libshogun/clustering/Hierarchical.h
| | | | | | | M	src/libshogun/clustering/KMeans.cpp
| | | | | | | M	src/libshogun/clustering/KMeans.h
| | | | | | | M	src/libshogun/distance/Distance.cpp
| | | | | | | M	src/libshogun/distributions/Distribution.cpp
| | | | | | | M	src/libshogun/distributions/Histogram.cpp
| | | | | | | M	src/libshogun/distributions/LinearHMM.cpp
| | | | | | | M	src/libshogun/distributions/PositionalPWM.h
| | | | | | | M	src/libshogun/evaluation/PRCEvaluation.cpp
| | | | | | | M	src/libshogun/evaluation/ROCEvaluation.cpp
| | | | | | | M	src/libshogun/features/Alphabet.h
| | | | | | | M	src/libshogun/features/AttributeFeatures.h
| | | | | | | M	src/libshogun/features/Features.cpp
| | | | | | | M	src/libshogun/features/Labels.cpp
| | | | | | | M	src/libshogun/features/SNPFeatures.cpp
| | | | | | | M	src/libshogun/features/SimpleFeatures.h
| | | | | | | M	src/libshogun/features/SparseFeatures.h
| | | | | | | M	src/libshogun/features/StringFeatures.h
| | | | | | | M	src/libshogun/kernel/CombinedKernel.cpp
| | | | | | | M	src/libshogun/kernel/CommUlongStringKernel.cpp
| | | | | | | M	src/libshogun/kernel/Kernel.cpp
| | | | | | | M	src/libshogun/kernel/LinearKernel.h
| | | | | | | M	src/libshogun/kernel/LocalAlignmentStringKernel.cpp
| | | | | | | M	src/libshogun/kernel/SNPStringKernel.cpp
| | | | | | | M	src/libshogun/kernel/SparseSpatialSampleStringKernel.cpp
| | | | | | | M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| | | | | | | M	src/libshogun/lib/Array.h
| | | | | | | M	src/libshogun/lib/BinaryStream.h
| | | | | | | M	src/libshogun/lib/File.cpp
| | | | | | | M	src/libshogun/lib/File.h
| | | | | | | M	src/libshogun/lib/HDF5File.cpp
| | | | | | | M	src/libshogun/lib/SerializableFile.cpp
| | | | | | | M	src/libshogun/lib/SimpleFile.h
| | | | | | | M	src/libshogun/lib/Trie.h
| | | | | | | M	src/libshogun/lib/parser.cpp
| | | | | | | M	src/libshogun/preproc/KernelPCACut.cpp
| | | | | | | M	src/libshogun/preproc/PCACut.cpp
| | | | | | | M	src/libshogun/regression/svr/LibSVR.cpp
| | | | | | | M	src/libshogun/structure/DynProg.cpp
| | | | | | | M	src/libshogun/structure/IntronList.cpp
| | | | | | |        
| * | | | | | commit 84e585eb9bb326a6b940220f0968eeb4981bbf18
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Mon May 9 13:05:22 2011 +0200
| | | | | | | 
| | | | | | |     Introduce SG_MALLOC, SG_FREE, SG_REALLOC.
| | | | | | |     
| | | | | | |     These replacements to the stdlib functions will throw exceptions in case
| | | | | | |     of errors (never return NULL).
| | | | | | | 
| | | | | | | M	src/libshogun/lib/memory.cpp
| | | | | | | M	src/libshogun/lib/memory.h
| | | | | | |        
| * | | | | | commit a861f66138f5d023172d404f3c5cb27cd81dc6e5
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Mon May 9 12:50:29 2011 +0200
| | | | | | | 
| | | | | | |     fix multiclass example
| | | | | | | 
| | | | | | | M	examples/undocumented/matlab_and_octave/classifier_libsvmmulticlass.m
| | | | | | |        
| * | | | | | commit 7890ec258b97d286210c1a16ed83fee77980fa24
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Mon May 9 12:48:54 2011 +0200
| | | | | | | 
| | | | | | |     remove roc eval functions from static interfaces
| | | | | | | 
| | | | | | | M	src/libshogunui/GUIClassifier.cpp
| | | | | | | M	src/libshogunui/GUIClassifier.h
| | | | | | | M	src/libshogunui/GUIHMM.cpp
| | | | | | | M	src/libshogunui/GUIHMM.h
| | | | | | | M	src/libshogunui/GUIMath.cpp
| | | | | | | M	src/libshogunui/GUIMath.h
| | | | | | | M	src/libshogunui/GUIPluginEstimate.cpp
| | | | | | | M	src/libshogunui/GUIPluginEstimate.h
| | | | | | | M	src/libshogunui/SGInterface.cpp
| | | | | | | M	src/libshogunui/SGInterface.h
| | | | | | |          
| * | | | | |   commit 02aa123b608ec7f10b81fe121a9b27b7418ddd4f
| |\ \ \ \ \ \  Merge: f3601ef 7d559e6
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Fri May 6 21:13:49 2011 +0200
| | | | | | | | 
| | | | | | | |     Merge branch 'master' of git://github.com/chengsoonong/shogun
| | | | | | | |         
| | * | | | | | commit 7d559e64c3ce4f66e4db88b5778944844bb3a735
| | | | | | | | Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| | | | | | | | Date:   Fri May 6 11:08:04 2011 +0200
| | | | | | | | 
| | | | | | | |     Added data and code for generating figures in PLoS SVM tutorial paper
| | | | | | | | 
| | | | | | | | A	applications/easysvm/tutpaper/data/effect_of_c.data
| | | | | | | | A	applications/easysvm/tutpaper/data/nonlinear.data
| | | | | | | | A	applications/easysvm/tutpaper/data/small_gc_toy.data
| | | | | | | | A	applications/easysvm/tutpaper/data/small_gc_toy_outlier.data
| | | | | | | | A	applications/easysvm/tutpaper/svm_params.py
| | | | | | | |           
| * | | | | | |   commit f3601ef559ef43814bf60edbb39cad1a0d121000
| |\ \ \ \ \ \ \  Merge: 5e61a00 b61fd38
| | |/ / / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| / / / / /   Date:   Fri May 6 21:03:58 2011 +0200
| | |/ / / / /    
| | | | | | |         Merge branch 'master' of git://github.com/sploving/shogun
| | | | | | |        
| | * | | | | commit b61fd38b94f70acd98cd749d0cd71849eb9d57ee
| | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | Date:   Wed May 4 19:53:59 2011 +0800
| | | | | | | 
| | | | | | |     put all the class into shogun package and add build.xml file
| | | | | | | 
| | | | | | | M	src/configure
| | | | | | | M	src/java_modular/build.xml
| | | | | | | M	src/java_modular/shogun/examples/VectorTest.java
| | | | | | |        
| | * | | | | commit e273a47f2f27878580cdb51dcefa0919e56a5f39
| | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | Date:   Wed May 4 14:52:03 2011 +0800
| | | | | | | 
| | | | | | |     put java classes into shogun package and add build.xml file
| | | | | | | 
| | | | | | | D	examples/undocumented/java_modular/vector_test.java
| | | | | | | A	src/java_modular/build.xml
| | | | | | | A	src/java_modular/shogun/examples/VectorTest.java
| | | | | | |        
* | | | | | | commit 5af5c0a4b4f286f0236452f25754a16b17e726aa
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Thu May 5 17:26:19 2011 +0200
| | | | | | | 
| | | | | | |     added set_from_parameters example
| | | | | | | 
| | | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | | | A	examples/undocumented/libshogun/parameter_set_from_parameters.cpp
| | | | | | |        
* | | | | | | commit d7f57e1fbe31f808bf47bf35f9e2427c2216454f
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Thu May 5 17:02:10 2011 +0200
| | | | | | | 
| | | | | | |     changed in32_t type of all used indices for subset selection to index_t
| | | | | | | 
| | | | | | | M	src/libshogun/features/Features.cpp
| | | | | | | M	src/libshogun/features/Features.h
| | | | | | | M	src/libshogun/features/StringFeatures.h
| | | | | | |        
* | | | | | | commit 186cddf04f57b659b3a6ba0147ff8fd69e92b4c4
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Thu May 5 11:41:32 2011 +0200
| | | | | | | 
| | | | | | |     moved the subset_idx_conversion function to CFeatures because it is the same for every derived class.
| | | | | | |     Therefore, removed it from CStringFeatures
| | | | | | | 
| | | | | | | M	src/libshogun/features/Features.h
| | | | | | | M	src/libshogun/features/StringFeatures.h
| | | | | | |        
* | | | | | | commit fdbacc9d1a63e6f05445c24142ae5dfee57f249d
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Wed May 4 23:13:40 2011 +0200
| | | | | | | 
| | | | | | |     added small documentation line
| | | | | | | 
| | | | | | | M	src/libshogun/base/Parameter.h
| | | | | | |        
* | | | | | | commit 9d31dea3310a49fd2b548936e6f549ce70d0f4d2
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Wed May 4 22:53:21 2011 +0200
| | | | | | | 
| | | | | | |     added function set_from_parameters(Parameter*) to set parameters from another Parameter instance
| | | | | | | 
| | | | | | | M	src/libshogun/base/Parameter.cpp
| | | | | | | M	src/libshogun/base/Parameter.h
| | | | | | |        
* | | | | | | commit 85d0dd40e29c295f48ff8aadc05b717515b970fa
|/ / / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | |   Date:   Wed May 4 22:52:37 2011 +0200
| | | | | |   
| | | | | |       added fcuntions to get size in bytes and number of elements of a TSGDataType
| | | | | |   
| | | | | |   M	src/libshogun/lib/DataType.cpp
| | | | | |   M	src/libshogun/lib/DataType.h
| | | | | |       
* | | | | | commit 5e61a004c3b0654d75fd9d86bc553ad73da929fa
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Mon May 2 14:48:45 2011 +0200
| | | | | | 
| | | | | |     PPWMs are really in logspace + malloc instead of new
| | | | | | 
| | | | | | M	examples/undocumented/python_modular/distribution_ppwm_modular.py
| | | | | | M	src/libshogun/distributions/PositionalPWM.cpp
| | | | | | M	src/libshogun/distributions/PositionalPWM.h
| | | | | |       
* | | | | | commit 48a49bee91e2c547a28e572c0c4a2f59a169ee2c
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Mon May 2 13:44:35 2011 +0200
| | | | | | 
| | | | | |     ppwm fixes in compute w
| | | | | | 
| | | | | | M	examples/undocumented/python_modular/distribution_ppwm_modular.py
| | | | | | M	src/libshogun/distributions/PositionalPWM.cpp
| | | | | | M	src/libshogun/distributions/PositionalPWM.h
| | | | | |       
* | | | | | commit 5904d7e7939ac48d8e68815b373f592e91036ebb
| |_|_|_|/  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | |   Date:   Mon May 2 13:43:09 2011 +0200
| | | | |   
| | | | |       fix bessel warning
| | | | |   
| | | | |   M	src/libshogun/kernel/Kernel.cpp
| | | | |      
* | | | | commit ecbc74b86ffd95d2f1d7882dd8e4af508a794f1c
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun May 1 00:33:25 2011 +0400
| | | | | 
| | | | |     Added class CLabels usage in a few classes
| | | | | 
| | | | | M	src/libshogun/classifier/GaussianNaiveBayes.h
| | | | | M	src/libshogun/evaluation/BinaryClassEvaluation.h
| | | | | M	src/libshogun/evaluation/ContingencyTableEvaluation.h
| | | | | M	src/libshogun/evaluation/MeanSquaredError.h
| | | | | M	src/libshogun/evaluation/MulticlassAccuracy.h
| | | | | M	src/libshogun/evaluation/PRCEvaluation.h
| | | | | M	src/libshogun/evaluation/ROCEvaluation.h
| | | | |      
* | | | | commit 48f88b52d84fbb85588d1f4df88fe212678bc566
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun May 1 00:24:26 2011 +0400
| | | | | 
| | | | |     Fixed shogun.Evaluation
| | | | | 
| | | | | M	src/libshogun/evaluation/Evaluation.h
| | | | | M	src/modular/Evaluation.i
| | | | |      
* | | | | commit ee59788619357406edfccb0ff6c8e4737b08d34c
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sat Apr 30 23:53:14 2011 +0400
| | | | | 
| | | | |     Code-style fix for area under curve method
| | | | | 
| | | | | M	src/libshogun/lib/Mathematics.h
| | | | |      
* | | | | commit 2445bd4e1aa895801f92ec231a8edf03bc383090
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sat Apr 30 23:51:25 2011 +0400
| | | | | 
| | | | |     Removed unused ROC calculation method from CMath
| | | | | 
| | | | | M	src/libshogun/lib/Mathematics.cpp
| | | | | M	src/libshogun/lib/Mathematics.h
| | | | |      
* | | | | commit 96c3af6b9c5062e484cdf5dc0fdb4c1f3c3ed5d8
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sat Apr 30 23:48:05 2011 +0400
| | | | | 
| | | | |     Removed PerformanceMeasures from modular interface
| | | | | 
| | | | | M	src/modular/Evaluation.i
| | | | |      
* | | | | commit eb35783a6c49c18664474d1ffd77a9ccf5d98309
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sat Apr 30 23:47:39 2011 +0400
| | | | | 
| | | | |     Removed PerfomanceMeasures classfiles
| | | | | 
| | | | | D	src/libshogun/evaluation/PerformanceMeasures.cpp
| | | | | D	src/libshogun/evaluation/PerformanceMeasures.h
| | | | |      
* | | | | commit 0aeb245f21147974a34013d3f614c389ccc16d05
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sat Apr 30 11:20:36 2011 +0400
| | | | | 
| | | | |     Cleaned CROCEvaluation
| | | | | 
| | | | | M	src/libshogun/evaluation/ROCEvaluation.cpp
| | | | |      
* | | | | commit 2315f1c066e72b3cab1b5fa60b83ebca75c6e7b8
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sat Apr 30 00:28:17 2011 +0400
| | | | | 
| | | | |     Fixed PRCEvaluation and ROCEvaluation for area_under_curve usage
| | | | | 
| | | | | M	src/libshogun/evaluation/PRCEvaluation.cpp
| | | | | M	src/libshogun/evaluation/ROCEvaluation.cpp
| | | | |      
* | | | | commit c4cf4dca60271fb121d0aa1f31c8a2da4e67e3fa
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sat Apr 30 00:12:30 2011 +0400
| | | | | 
| | | | |     Modified CPRCEvaluation for area_under_curve usage
| | | | | 
| | | | | M	src/libshogun/evaluation/PRCEvaluation.cpp
| | | | |      
* | | | | commit 3e93f290254b8edaf10893bc8a0e23aa3409f7f4
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sat Apr 30 00:10:59 2011 +0400
| | | | | 
| | | | |     Fixed area_under_curve method
| | | | | 
| | | | | M	src/libshogun/lib/Mathematics.h
| | | | |        
* | | | |   commit 4439d2018f76952a89736f3977f8fa6c33c71c93
|\ \ \ \ \  Merge: 4335fd6 046e59e
| | |_|_|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |/| | |   Date:   Fri Apr 29 23:50:25 2011 +0400
| | | | |   
| | | | |       Merge remote branch 'upstream/master'
| | | | |        
| * | | |   commit 046e59e5ed22ad204362bdac642594834d2859a4
| |\ \ \ \  Merge: 2461c5e a19e63f
| | |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | |   Date:   Fri Apr 29 15:01:34 2011 +0200
| | | | |   
| | | | |       Merge git://github.com/sploving/shogun
| | | | |      
| | * | | commit a19e63fa222d5e600313a5142423898a06936fc1
| | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | Date:   Fri Apr 29 19:28:56 2011 +0800
| | | | | 
| | | | |     fix java vector typemap bug
| | | | | 
| | | | | M	examples/undocumented/java_modular/vector_test.java
| | | | | M	src/java_modular/swig_typemaps.i
| | | | |      
| | * | | commit 363e8825674ff6b3acad2b8d5b36231cddb9ce4d
| | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | Date:   Fri Apr 29 16:14:35 2011 +0800
| | | | | 
| | | | |     java vector typemap and example
| | | | | 
| | | | | A	examples/undocumented/java_modular/vector_test.java
| | | | | M	src/java_modular/swig_typemaps.i
| | | | |      
| * | | | commit 2461c5e20be9af2dd3adfac524655d536098527d
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Fri Apr 29 15:00:44 2011 +0200
| | | | | 
| | | | |     Add simple example for ppwm.
| | | | | 
| | | | | A	examples/undocumented/python_modular/distribution_ppwm_modular.py
| | | | | M	src/libshogun/distributions/PositionalPWM.h
| | | | | M	src/modular/Distribution.i
| | | | |      
| * | | | commit 4cc591aac45b92998749032650f29ac05eb716c7
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Fri Apr 29 08:30:40 2011 +0200
| | | | | 
| | | | |     Add first draft of ppwm.
| | | | | 
| | | | | A	src/libshogun/distributions/PositionalPWM.cpp
| | | | | A	src/libshogun/distributions/PositionalPWM.h
| | | | | M	src/modular/Distribution.i
| | | | |      
| * | | | commit e24feb1926a01503d5f2568aa4673733e446c623
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Fri Apr 29 08:29:51 2011 +0200
| | | |   
| | | |       add * to comment to get doxygen notice it
| | | |   
| | | |   M	src/libshogun/evaluation/PRCEvaluation.h
| | | |   M	src/libshogun/evaluation/ROCEvaluation.h
| | | |       
| * | |   commit 2be31a4af20f151eec65f20d1c8d972ed8568437
| |\ \ \  Merge: b10f479 38d7b67
| | |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Thu Apr 28 15:52:38 2011 +0200
| | | |   
| | | |       Merge branches 'streaming' and 'master' of git://github.com/frx/shogun
| | | |       
| | * |   commit 38d7b67845a77bb0c51d16812076f56d0a2c6d29
| | |\ \  Merge: 658af1f 05b88ec
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Wed Apr 27 19:19:38 2011 +0530
| | | | | 
| | | | |     Merge remote branch 'upstream/master' into streaming
| | | | |      
| | * | | commit 658af1fd3e60ee9e9913d1865ca5231a396c178e
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Mon Apr 25 22:06:44 2011 +0530
| | | | | 
| | | | |     Minor typos preventing compilation fixed in parser and StreamingFeatures.
| | | | | 
| | | | | M	src/libshogun/features/StreamingFeatures.h
| | | | | M	src/libshogun/lib/parser.cpp
| | | | |      
| | * | | commit 12127650ee80705e40c608cca9c8855718125e96
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Mon Apr 25 22:01:42 2011 +0530
| | | | | 
| | | | |     Fixed indentation as per pull request comments.
| | | | | 
| | | | | M	src/libshogun/features/StreamingFeatures.cpp
| | | | | M	src/libshogun/features/StreamingFeatures.h
| | | | | M	src/libshogun/lib/StreamingFile.cpp
| | | | | M	src/libshogun/lib/StreamingFile.h
| | | | | M	src/libshogun/lib/parser.cpp
| | | | | M	src/libshogun/lib/parser.h
| | | | |      
| | * | | commit ab4f54c920ceb42c91f8bf4bbf4cee20bcf12bbc
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Mon Apr 25 21:04:51 2011 +0530
| | | | | 
| | | | |     Feature vectors are no more copied into the StreamingFeature object. Plus style modifications as per pull request.
| | | | | 
| | | | | M	src/libshogun/features/StreamingFeatures.cpp
| | | | | M	src/libshogun/features/StreamingFeatures.h
| | | | | M	src/libshogun/lib/StreamingFile.cpp
| | | | | M	src/libshogun/lib/parser.cpp
| | | | | M	src/libshogun/lib/parser.h
| | | | |      
| | * | | commit 457d7480af1f46a1f84e15fbfcf14ed427f6f9d2
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Fri Apr 22 05:34:19 2011 +0530
| | | | | 
| | | | |     Fixed some whitespace issues in parser
| | | | | 
| | | | | M	src/libshogun/features/StreamingFeatures.cpp
| | | | | M	src/libshogun/lib/parser.cpp
| | | | | M	src/libshogun/lib/parser.h
| | | | |        
| | * | |   commit 17b91ad9717526a107a7d4a0831a4de33245ab08
| | |\ \ \  Merge: 131b21e 621c7f9
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Fri Apr 22 05:08:28 2011 +0530
| | | | | | 
| | | | | |     Merge remote branch 'upstream/master' into streaming
| | | | | |       
| | * | | | commit 131b21ee0fdfa7ee89c23b77641558dee084a200
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Fri Apr 22 05:07:44 2011 +0530
| | | | | | 
| | | | | |     Fixed StreamingFeatures and parser, now in working condition.
| | | | | | 
| | | | | | M	src/libshogun/features/StreamingFeatures.cpp
| | | | | | M	src/libshogun/features/StreamingFeatures.h
| | | | | | M	src/libshogun/lib/parser.cpp
| | | | | | M	src/libshogun/lib/parser.h
| | | | | |         
| | * | | |   commit 3f57236044bd880183e34bc1e01bc3f90baaa335
| | |\ \ \ \  Merge: 6183c91 02c32c3
| | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | Date:   Thu Apr 21 08:50:36 2011 +0530
| | | | | | | 
| | | | | | |     Merge remote branch 'upstream/master' into streaming
| | | | | | |        
| | * | | | | commit 6183c919956f4c1be2cbc4fae37492c0e397bb23
| | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | Date:   Thu Apr 21 08:45:18 2011 +0530
| | | | | | | 
| | | | | | |     Edits in StreamingFile for compatibility with parser.
| | | | | | | 
| | | | | | | M	src/libshogun/lib/StreamingFile.h
| | | | | | |        
| | * | | | | commit 555f7b54d788a8ecd3353a7037a008e4dced886e
| | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | Date:   Thu Apr 21 08:44:25 2011 +0530
| | | | | | | 
| | | | | | |     Improved parser for handling CStreamingFile. Doc added.
| | | | | | | 
| | | | | | | A	src/libshogun/lib/parser.cpp
| | | | | | | A	src/libshogun/lib/parser.h
| | | | | | |        
| | * | | | | commit 6db242d10747a75362c930c3ea0b5b794a10a855
| | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | Date:   Wed Apr 20 14:32:50 2011 +0530
| | | | | | | 
| | | | | | |     Untracked some files
| | | | | | | 
| | | | | | | D	examples/undocumented/libshogun/sample.dat
| | | | | | | D	examples/undocumented/libshogun/streaming_feat.cpp
| | | | | | | D	src/libshogun/lib/parser.cpp
| | | | | | | D	src/libshogun/lib/parser.h
| | | | | | |          
| | * | | | |   commit 8acfb7329bb51efae188979086a87043a407fede
| | |\ \ \ \ \  Merge: b4d8235 080b05b
| | | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | | Date:   Wed Apr 20 14:24:56 2011 +0530
| | | | | | | | 
| | | | | | | |     Merge remote branch 'upstream/master' into streaming
| | | | | | | |         
| | * | | | | | commit b4d8235cf940c93625efcbbb170839fe3b0595a6
| | | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | | Date:   Wed Apr 20 14:21:17 2011 +0530
| | | | | | | | 
| | | | | | | |     StreamingFile created, implemented a get_.._vector function.
| | | | | | | | 
| | | | | | | | A	src/libshogun/lib/StreamingFile.cpp
| | | | | | | | A	src/libshogun/lib/StreamingFile.h
| | | | | | | |         
| | * | | | | | commit 64e34a8594043afe5939b2836ca915b31eec7113
| | | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | | Date:   Tue Apr 19 13:30:04 2011 +0530
| | | | | | | | 
| | | | | | | |     Corrected include file paths (properly).
| | | | | | | | 
| | | | | | | | M	src/libshogun/lib/AsciiFile.h
| | | | | | | |         
| | * | | | | | commit 8f80281d02068ca94be5664ec7fe1b11529a7481
| | | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | | Date:   Tue Apr 19 10:42:07 2011 +0530
| | | | | | | | 
| | | | | | | |     Modified include paths in AsciiFile.h to <shogun/..>
| | | | | | | | 
| | | | | | | | M	src/libshogun/lib/AsciiFile.h
| | | | | | | |           
| | * | | | | |   commit 72011b67fc9e1126315f0e2c8530f4df2597aef9
| | |\ \ \ \ \ \  Merge: d4f9130 6d779fb
| | | | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | | | Date:   Tue Apr 19 09:33:21 2011 +0530
| | | | | | | | | 
| | | | | | | | |     Merge remote branch 'upstream/master' into streaming
| | | | | | | | |            
| | * | | | | | |   commit d4f913021bc8b578582e28348e6a778eee542fde
| | |\ \ \ \ \ \ \  Merge: fa0e6e3 152a967
| | | | | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | | | | Date:   Mon Apr 18 22:11:37 2011 +0530
| | | | | | | | | | 
| | | | | | | | | |     Merge remote branch 'upstream/master' into streaming
| | | | | | | | | |           
| | * | | | | | | | commit fa0e6e399964fdbda4be7e18b2c84d92c5e60154
| | | | | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | | | | Date:   Mon Apr 18 02:18:41 2011 +0530
| | | | | | | | | | 
| | | | | | | | | |     Moved some files into the examples folder.
| | | | | | | | | | 
| | | | | | | | | | A	examples/undocumented/libshogun/sample.dat
| | | | | | | | | | A	examples/undocumented/libshogun/streaming_feat.cpp
| | | | | | | | | | D	src/libshogun/features/sample.dat
| | | | | | | | | |             
| | * | | | | | | |   commit 5b08acb3c7c9cfcdc86debf845765e6426bc912c
| | |\ \ \ \ \ \ \ \  Merge: 5963e1e 47f74d3
| | | | | | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | | | | | Date:   Mon Apr 18 01:57:43 2011 +0530
| | | | | | | | | | | 
| | | | | | | | | | |     Merge remote branch 'upstream/master' into streaming
| | | | | | | | | | |            
| | * | | | | | | | | commit 5963e1ed865643ca43a748f86017166797b4ef51
| | | | | | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | | | | | Date:   Mon Apr 18 01:44:28 2011 +0530
| | | | | | | | | | | 
| | | | | | | | | | |     StreamingFeatures class, working prototype
| | | | | | | | | | | 
| | | | | | | | | | | A	src/libshogun/features/StreamingFeatures.cpp
| | | | | | | | | | | A	src/libshogun/features/StreamingFeatures.h
| | | | | | | | | | | A	src/libshogun/features/sample.dat
| | | | | | | | | | | A	src/libshogun/lib/parser.cpp
| | | | | | | | | | | A	src/libshogun/lib/parser.h
| | | | | | | | | | |            
| * | | | | | | | | | commit b10f479df90ef2b6d930dd1faa20e65f7d1dadfc
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Thu Apr 28 05:43:38 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     use #if defined and friends to make the file more readable and to only
| | | | | | | | | | |     include init functions in the csharp and java modular interfaces.
| | | | | | | | | | | 
| | | | | | | | | | | M	src/modular/SGBase.i
| | | | | | | | | | |            
| * | | | | | | | | | commit fec837dc12622398e3a3ac8feafe168da0120c31
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Thu Apr 28 05:25:35 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     update readme to mention the new interfaces
| | | | | | | | | | | 
| | | | | | | | | | | M	README
| | | | | | | | | | |            
| * | | | | | | | | | commit 479c5cd1867466c3a1ba743a94276d9f8430084c
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Thu Apr 28 04:59:01 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     comment init code for SWIGR
| | | | | | | | | | | 
| | | | | | | | | | | M	src/modular/SGBase.i
| | | | | | | | | | |            
| * | | | | | | | | | commit 4d0fe5dcd1bcef2e9f56d0f93d709a3547c014e7
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Wed Apr 27 23:22:46 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     rename functions to reflect that we obtain the global objects
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/base/SGObject.cpp
| | | | | | | | | | | M	src/libshogun/base/SGObject.h
| | | | | | | | | | |            
| * | | | | | | | | | commit 7b926a5aac2c8a9b5548260a8c2847c26ebb894f
| | |_|_|_|_|_|_|_|/  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | | | | | | |   Date:   Wed Apr 27 22:51:08 2011 +0200
| | | | | | | | | |   
| | | | | | | | | |       fix compile failure
| | | | | | | | | |       
| | | | | | | | | |       It got introduced in the csharp commit (protected variables
| | | | | | | | | |       where accessed - introducing public getters fixes this).
| | | | | | | | | |   
| | | | | | | | | |   M	src/libshogun/lib/Mathematics.h
| | | | | | | | | |   M	src/libshogunui/SGInterface.cpp
| | | | | | | | | |             
| * | | | | | | | |   commit 9ce80cb84abaa913f8468c8bc5b70827b1fdf536
| |\ \ \ \ \ \ \ \ \  Merge: 2e28298 fb806de
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Wed Apr 27 22:43:22 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     Merge git://github.com/frx/shogun
| | | | | | | | | | |            
| | * | | | | | | | | commit fb806de0a57322a26202e3fbc3eba74dc3be7845
| | | | | | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | | | | | Date:   Tue Apr 19 13:31:38 2011 +0530
| | | | | | | | | | | 
| | | | | | | | | | |     Corrected include file paths (properly).
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/lib/AsciiFile.h
| | | | | | | | | | |            
| | * | | | | | | | | commit 71f132ccf586fcb6016a2a86172e346ac202909e
| | | |_|_|/ / / / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | |/| | | | | | |   Date:   Tue Apr 19 10:45:50 2011 +0530
| | | | | | | | | |   
| | | | | | | | | |       Modified include paths in AsciiFile.h to <shogun/..>
| | | | | | | | | |   
| | | | | | | | | |   M	src/libshogun/lib/AsciiFile.h
| | | | | | | | | |             
| * | | | | | | | |   commit 2e2829807650b9efd69babc81855bc80ea1ba0fe
| |\ \ \ \ \ \ \ \ \  Merge: 61fc777 9147f26
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Wed Apr 27 22:40:34 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     Merge git://github.com/chengsoonong/shogun
| | | | | | | | | | |            
| | * | | | | | | | | commit 9147f2603ece0f05d8c0318dcec9ef27dcc58ac5
| | | | | | | | | | | Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| | | | | | | | | | | Date:   Wed Apr 27 17:29:45 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     Small bugfix to cross validation function call
| | | | | | | | | | | 
| | | | | | | | | | | M	applications/easysvm/setup.py
| | | | | | | | | | | M	applications/easysvm/splicesites/tutorial_example.py
| | | | | | | | | | |            
| * | | | | | | | | | commit 61fc7773d27561bcd581408b03c09798fd2b0d07
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Wed Apr 27 22:28:17 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     add lib prefix like in java to generated .so files
| | | | | | | | | | | 
| | | | | | | | | | | M	src/configure
| | | | | | | | | | |            
| * | | | | | | | | | commit bc536fcbd4998075e2f66a28b8aa6c7c9c2838b2
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Wed Apr 27 22:27:28 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     Get a minimal csharp example to work.
| | | | | | | | | | | 
| | | | | | | | | | | A	examples/undocumented/csharp_modular/minimal_test.cs
| | | | | | | | | | | M	src/libshogun/base/DynArray.h
| | | | | | | | | | | M	src/libshogun/base/SGObject.h
| | | | | | | | | | | M	src/libshogun/lib/DynamicArray.h
| | | | | | | | | | | M	src/libshogun/lib/Mathematics.h
| | | | | | | | | | |            
| * | | | | | | | | | commit 5dbbbb2e12bac7209279f052e5397540d466f849
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Wed Apr 27 20:21:28 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     rename variables to fix naming clashes
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/kernel/CauchyKernel.cpp
| | | | | | | | | | | M	src/libshogun/kernel/CauchyKernel.h
| | | | | | | | | | |            
| * | | | | | | | | | commit bbadc47e054fb8a7ff4a6705d590cc55a419fd3d
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Wed Apr 27 20:21:10 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     ignore *.class files too
| | | | | | | | | | | 
| | | | | | | | | | | M	.gitignore
| | | | | | | | | | |            
| * | | | | | | | | | commit d83b31e9a0b43ecffbe3fa29fca1766be6d14879
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Wed Apr 27 20:20:27 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     add ruby modular minimal example
| | | | | | | | | | | 
| | | | | | | | | | | A	examples/undocumented/ruby_modular/minimal_test.rb
| | | | | | | | | | |            
| * | | | | | | | | | commit 7b024009f4dc139be92aa84dbd8a57ad070d57bf
| |/ / / / / / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | |   Date:   Wed Apr 27 17:38:21 2011 +0200
| | | | | | | | | |   
| | | | | | | | | |       whitespace changes - to match coding style
| | | | | | | | | |   
| | | | | | | | | |   M	src/libshogun/base/Parameter.cpp
| | | | | | | | | |   M	src/libshogun/lib/DataType.h
| | | | | | | | | |           
| * | | | | | | | | commit e1dcd70115ac9ecb28162c6945f022e4a2434df0
| | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | Date:   Wed Apr 27 16:25:23 2011 +0200
| | | | | | | | | | 
| | | | | | | | | |     fix member naming clash
| | | | | | | | | | 
| | | | | | | | | | M	src/libshogun/kernel/MultiquadricKernel.cpp
| | | | | | | | | | M	src/libshogun/kernel/MultiquadricKernel.h
| | | | | | | | | |           
| * | | | | | | | | commit aad532b76489e61c535220ca00da3db87f3d72c1
| | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | Date:   Wed Apr 27 16:24:16 2011 +0200
| | | | | | | | | | 
| | | | | | | | | |     fix (member) variable naming clashes
| | | | | | | | | | 
| | | | | | | | | | M	src/libshogun/kernel/LogKernel.cpp
| | | | | | | | | | M	src/libshogun/kernel/LogKernel.h
| | | | | | | | | |           
| * | | | | | | | | commit c8e00659183070507341a073984cb7ef889467f9
| | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | Date:   Wed Apr 27 16:23:20 2011 +0200
| | | | | | | | | | 
| | | | | | | | | |     prefix java_modular generated .so files with lib
| | | | | | | | | | 
| | | | | | | | | | M	src/configure
| | | | | | | | | |           
| * | | | | | | | | commit 4763b141e574a35e36f090ab4d220b6cb6af59f6
| | |_|_|_|_|_|_|/  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | | | | | |   Date:   Wed Apr 27 16:15:45 2011 +0200
| | | | | | | | |   
| | | | | | | | |       fix a variable naming clash
| | | | | | | | |   
| | | | | | | | |   M	src/libshogun/classifier/AveragedPerceptron.cpp
| | | | | | | | |          
| * | | | | | | | commit 05b88ec75edb1d4e0d6f3c6998c2031e4b952d2d
| | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | Date:   Wed Apr 27 12:35:36 2011 +0200
| | | | | | | | | 
| | | | | | | | |     add an example for mixed norm mkl and make BLOCK_NORM naming more
| | | | | | | | |     consistent (always with '_')
| | | | | | | | | 
| | | | | | | | | M	examples/undocumented/matlab_and_octave/mkl_classify_christmas_star.m
| | | | | | | | | M	src/libshogun/classifier/Classifier.h
| | | | | | | | | M	src/libshogun/classifier/mkl/MKL.cpp
| | | | | | | | | M	src/libshogunui/GUIClassifier.cpp
| | | | | | | | | M	src/libshogunui/GUIClassifier.h
| | | | | | | | | M	src/libshogunui/SGInterface.cpp
| | | | | | | | | M	src/libshogunui/SGInterface.h
| | | | | | | | |          
| * | | | | | | | commit 8af2ece0483903001ebd8aea76e6b51cfe995ea7
| | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | Date:   Wed Apr 27 12:35:14 2011 +0200
| | | | | | | | | 
| | | | | | | | |     fix naming clash renaming degree -> m_degree
| | | | | | | | | 
| | | | | | | | | M	src/libshogun/kernel/PowerKernel.cpp
| | | | | | | | | M	src/libshogun/kernel/PowerKernel.h
| | | | | | | | |          
| * | | | | | | | commit 7ce4b0ef41c113c48fbcdd2e8ce2288607c98629
| | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | Date:   Wed Apr 27 12:15:13 2011 +0200
| | | | | | | | | 
| | | | | | | | |     Add support for block norm mkl
| | | | | | | | | 
| | | | | | | | | M	src/libshogun/classifier/Classifier.h
| | | | | | | | | M	src/libshogun/classifier/mkl/MKL.cpp
| | | | | | | | | M	src/libshogun/classifier/mkl/MKL.h
| | | | | | | | | M	src/libshogunui/GUIClassifier.cpp
| | | | | | | | | M	src/libshogunui/GUIClassifier.h
| | | | | | | | | M	src/libshogunui/GUICommands.h
| | | | | | | | | M	src/libshogunui/SGInterface.cpp
| | | | | | | | |            
| * | | | | | | |   commit 320094d67ad042981df2d20540bdc8b123a9da4c
| |\ \ \ \ \ \ \ \  Merge: b318a31 c962ae9
| | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | Date:   Wed Apr 27 01:12:06 2011 -0700
| | | | | | | | | | 
| | | | | | | | | |     Merged pull request #70 from SergeyLisitsyn/master.
| | | | | | | | | |     
| | | | | | | | | |     PRCEvaluation class addition and some fixes for shogun.Evaluation
| | | | | | | | | |           
| * | | | | | | | | commit b318a318699a1dcf04d215ba21bf51f42d26fe1d
| | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | Date:   Wed Apr 27 07:53:04 2011 +0200
| | | | | | | | | | 
| | | | | | | | | |     fix name mismatch
| | | | | | | | | | 
| | | | | | | | | | M	examples/undocumented/java_modular/minimal_test.java
| | | | | | | | | |           
* | | | | | | | | | commit 4335fd636225a208ad5612882508b71f67e554b0
| |/ / / / / / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|/| | | | | | | |   Date:   Fri Apr 29 23:50:20 2011 +0400
| | | | | | | | |   
| | | | | | | | |       Added function used to compute area under curve to CMath
| | | | | | | | |   
| | | | | | | | |   M	src/libshogun/lib/Mathematics.h
| | | | | | | | |          
* | | | | | | | | commit c962ae93df4f8484a8ee304e500c93bead5ca2bb
| | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | Date:   Wed Apr 27 02:22:43 2011 +0400
| | | | | | | | | 
| | | | | | | | |     Some fixes
| | | | | | | | | 
| | | | | | | | | M	src/libshogun/evaluation/PRCEvaluation.cpp
| | | | | | | | |          
* | | | | | | | | commit 5fe27f4e7a861eff33eba493cb58c03c1cc6522d
| | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | Date:   Wed Apr 27 02:07:50 2011 +0400
| | | | | | | | | 
| | | | | | | | |     Some doc additions
| | | | | | | | | 
| | | | | | | | | M	src/libshogun/evaluation/ContingencyTableEvaluation.h
| | | | | | | | |          
* | | | | | | | | commit 72356c1ec9dac4a0c6ae7d0f6c30e39bf8de504c
| | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | Date:   Wed Apr 27 02:02:29 2011 +0400
| | | | | | | | | 
| | | | | | | | |     Modified warnings in case of rates are uninitialized
| | | | | | | | | 
| | | | | | | | | M	src/libshogun/evaluation/ContingencyTableEvaluation.h
| | | | | | | | | M	src/libshogun/evaluation/ROCEvaluation.cpp
| | | | | | | | |          
* | | | | | | | | commit 957380000c6464978ad901575c6e49d2b2c7d7aa
| | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | Date:   Wed Apr 27 01:59:44 2011 +0400
| | | | | | | | | 
| | | | | | | | |     Integrated CPRCEvaluation to modular interface
| | | | | | | | | 
| | | | | | | | | M	src/modular/Evaluation.i
| | | | | | | | |          
* | | | | | | | | commit 1c556511e5d93e638ed134cd00a09aac0e52bb46
|/ / / / / / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | |   Date:   Wed Apr 27 01:59:10 2011 +0400
| | | | | | | |   
| | | | | | | |       Added class PRCEvaluation for evaluating Precision Recall Curves and
| | | | | | | |       auPRC scores
| | | | | | | |   
| | | | | | | |   A	src/libshogun/evaluation/PRCEvaluation.cpp
| | | | | | | |   A	src/libshogun/evaluation/PRCEvaluation.h
| | | | | | | |         
* | | | | | | | commit ade1c3da67476135342e441fec448dbaee0b8381
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Tue Apr 26 21:29:48 2011 +0200
| | | | | | | | 
| | | | | | | |     minimal java example
| | | | | | | | 
| | | | | | | | A	examples/undocumented/java_modular/minimal_test.java
| | | | | | | |         
* | | | | | | | commit 7233fdb7edf31ed6daed36feb94c1cec5b66ad72
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Tue Apr 26 18:33:38 2011 +0200
| | | | | | | | 
| | | | | | | |     Add missing includes for feature type and compressor type and re-enable
| | | | | | | |     init_shogun / exit_shogun such that these can be called from
| | | | | | | |     java_modular.
| | | | | | | | 
| | | | | | | | M	src/modular/Distance.i
| | | | | | | | M	src/modular/Features.i
| | | | | | | | M	src/modular/Kernel.i
| | | | | | | | M	src/modular/PreProc.i
| | | | | | | | M	src/modular/SGBase.i
| | | | | | | |         
* | | | | | | | commit 110c451a1e53c65406af7c6aca3d1cf8558b6d4e
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Tue Apr 26 18:32:29 2011 +0200
| | | | | | | | 
| | | | | | | |     Include linux path in jni generation and improve java detection for
| | | | | | | |     official jdk's.
| | | | | | | | 
| | | | | | | | M	src/configure
| | | | | | | |         
* | | | | | | | commit d91b6298cf89bd83d3482ee758b7a6cba2d6c1a9
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Tue Apr 26 18:30:36 2011 +0200
| | | | | | | | 
| | | | | | | |     Include FeatureType.h needed by these modules and drop unused classify
| | | | | | | |     function causing trouble in java modular.
| | | | | | | | 
| | | | | | | | M	src/libshogun/distance/Distance.h
| | | | | | | | M	src/libshogun/kernel/Kernel.h
| | | | | | | | M	src/libshogun/regression/KRR.h
| | | | | | | |         
* | | | | | | | commit 219ee4a65448d7c81b708222b965b0a3ceb5d4b5
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Tue Apr 26 16:29:50 2011 +0200
| | | | | | | | 
| | | | | | | |     Rename base class Evaluation to BaseEvaluation to fix naming clash in
| | | | | | | |     java_modular
| | | | | | | | 
| | | | | | | | M	src/modular/Evaluation.i
| | | | | | | |         
* | | | | | | | commit c08a1e43d6f464c48789326ad1b865d6b2d14512
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Tue Apr 26 14:50:21 2011 +0200
| | | | | | | | 
| | | | | | | |     add clapack_dpotri definition to header file
| | | | | | | | 
| | | | | | | | M	src/libshogun/lib/lapack.h
| | | | | | | |           
* | | | | | | |   commit 2bf3c8ff29ac7400b56cec60f14d7c93b2df6433
|\ \ \ \ \ \ \ \  Merge: 73a3e28 69cd038
| | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | Date:   Mon Apr 25 00:40:09 2011 +0200
| | | | | | | | | 
| | | | | | | | |     Merge git://github.com/mcopik/shogun
| | | | | | | | |          
| * | | | | | | | commit 69cd038b56c8aa50b791e13d16ca209f9d39e8d7
| | | | | | | | | Author: Marcin Copik <mcopik@gmail.com>
| | | | | | | | | Date:   Mon Apr 25 00:20:37 2011 +0200
| | | | | | | | | 
| | | | | | | | |     Previous versions of matrix/vector functions
| | | | | | | | | 
| | | | | | | | | M	src/libshogun/lib/AsciiFile.cpp
| | | | | | | | |          
| * | | | | | | | commit a98e5d10dab97295c2c860f595d7d6ab66303d13
| | | | | | | | | Author: Marcin Copik <mcopik@gmail.com>
| | | | | | | | | Date:   Sat Apr 23 01:38:11 2011 +0200
| | | | | | | | | 
| | | | | | | | |     Fixes
| | | | | | | | | 
| | | | | | | | | M	src/libshogun/lib/AsciiFile.cpp
| | | | | | | | |          
| * | | | | | | | commit 38267bfa885832a6219efc4938efb9ebad39eb2e
| | | | | | | | | Author: Marcin Copik <mcopik@gmail.com>
| | | | | | | | | Date:   Sat Apr 23 01:07:15 2011 +0200
| | | | | | | | | 
| | | | | | | | |     Support for NDArray in CAsciiFile
| | | | | | | | | 
| | | | | | | | | M	src/libshogun/lib/AsciiFile.cpp
| | | | | | | | | M	src/libshogun/lib/AsciiFile.h
| | | | | | | | | M	src/libshogun/lib/BinaryFile.cpp
| | | | | | | | | M	src/libshogun/lib/BinaryFile.h
| | | | | | | | |            
* | | | | | | | |   commit 73a3e28604cade74cb985dee04fc4552e88dbeeb
|\ \ \ \ \ \ \ \ \  Merge: 950ca60 30358c1
| | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | Date:   Mon Apr 25 00:28:31 2011 +0200
| | | | | | | | | | 
| | | | | | | | | |     Merge git://github.com/Siddharthk/shogun
| | | | | | | | | |           
| * | | | | | | | | commit 30358c1efe8a84d426ef7af91160047de7aa2c02
| | | | | | | | | | Author: Siddharth Kherada <siddharthkherada27@gmail.com>
| | | | | | | | | | Date:   Wed Apr 20 19:23:01 2011 +0530
| | | | | | | | | | 
| | | | | | | | | |     Added class CLoss,Added function vector_multiply,Removed Whitespaces
| | | | | | | | | | 
| | | | | | | | | | M	src/libshogun/classifier/svm/SGDQN.cpp
| | | | | | | | | | M	src/libshogun/classifier/svm/SGDQN.h
| | | | | | | | | | A	src/libshogun/lib/Loss.h
| | | | | | | | | | M	src/libshogun/lib/Mathematics.h
| | | | | | | | | |           
| * | | | | | | | | commit 8111676624957f34a5647df256627e46c3b8eac1
| | | | | | | | | | Author: Siddharth Kherada <siddharthkherada27@gmail.com>
| | | | | | | | | | Date:   Mon Apr 18 16:56:13 2011 +0530
| | | | | | | | | | 
| | | | | | | | | |     Fixed error
| | | | | | | | | | 
| | | | | | | | | | M	src/libshogun/classifier/Classifier.h
| | | | | | | | | |             
| * | | | | | | | |   commit a46c0d7d5bc7dccdbfde5b6e2ef4a4a5e19bfdd2
| |\ \ \ \ \ \ \ \ \  Merge: 5738348 fec377d
| | | | | | | | | | | Author: Siddharth Kherada <siddharthkherada27@gmail.com>
| | | | | | | | | | | Date:   Mon Apr 18 16:25:14 2011 +0530
| | | | | | | | | | | 
| | | | | | | | | | |     Merge commit 'upstream/master'
| | | | | | | | | | |            
| * | | | | | | | | | commit 57383485143ed43f94bba32710e97e26bf14df24
| | | | | | | | | | | Author: Siddharth Kherada <siddharthkherada27@gmail.com>
| | | | | | | | | | | Date:   Mon Apr 18 16:12:31 2011 +0530
| | | | | | | | | | | 
| | | | | | | | | | |     Removed Whitespaces
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/classifier/svm/SGDQN.cpp
| | | | | | | | | | | M	src/libshogun/classifier/svm/SGDQN.h
| | | | | | | | | | |              
| * | | | | | | | | |   commit 0fe2e34719ae61cfa97f56af48cebb27863ee34b
| |\ \ \ \ \ \ \ \ \ \  Merge: 47f74d3 f260d7a
| | |_|_|_|_|/ / / / /  Author: Siddharth Kherada <siddharthkherada27@gmail.com>
| |/| | | | | | | | |   Date:   Mon Apr 18 15:56:09 2011 +0530
| | | | | | | | | | |   
| | | | | | | | | | |       SGD-QN Classifier added
| | | | | | | | | | |            
| | * | | | | | | | | commit f260d7a1e20ff713d027afb565de0c97fbaec20f
| | | | | | | | | | | Author: Siddharth Kherada <siddharthkherada27@gmail.com>
| | | | | | | | | | | Date:   Mon Apr 18 14:41:11 2011 +0530
| | | | | | | | | | | 
| | | | | | | | | | |     SGD-QN Classifier added
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/classifier/Classifier.h
| | | | | | | | | | | A	src/libshogun/classifier/svm/SGDQN.cpp
| | | | | | | | | | | A	src/libshogun/classifier/svm/SGDQN.h
| | | | | | | | | | | M	src/modular/Classifier.i
| | | | | | | | | | |            
* | | | | | | | | | | commit 950ca603712d464fb491cf359a65a27c416f64e7
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Mon Apr 25 00:03:49 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     fix access of protected member variable
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | | | | | | | | | |            
* | | | | | | | | | | commit 37a2bf8a685a09fdf46badd4c664c5248ea3d0a6
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Mon Apr 25 00:03:10 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     fix ifdefs - causing compilation failure
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVM.h
| | | | | | | | | | |            
* | | | | | | | | | | commit 5a5e2d717a01b287b26614ad6623d5e9ca1d93d1
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Mon Apr 25 00:01:00 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     fix typo in documentation
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/evaluation/ROCEvaluation.h
| | | | | | | | | | |              
* | | | | | | | | | |   commit ea04aefdf9e700a94c455896c8e250bf5432eaa6
|\ \ \ \ \ \ \ \ \ \ \  Merge: f75fb0b 91ee80f
| | | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | | Date:   Sun Apr 24 22:49:35 2011 +0200
| | | | | | | | | | | | 
| | | | | | | | | | | |     Merge git://github.com/SergeyLisitsyn/shogun
| | | | | | | | | | | |             
| * | | | | | | | | | | commit 91ee80ff7a2899146b33a73804702767ea166684
| | | | | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | | | | Date:   Mon Apr 25 00:35:40 2011 +0400
| | | | | | | | | | | | 
| | | | | | | | | | | |     Various style fixes and some safety issue with get_ROC()
| | | | | | | | | | | | 
| | | | | | | | | | | | M	src/libshogun/evaluation/ROCEvaluation.cpp
| | | | | | | | | | | | M	src/libshogun/evaluation/ROCEvaluation.h
| | | | | | | | | | | |             
| * | | | | | | | | | | commit df1e1a1a48ccd17995f260bbe73d92b5c936bac2
| | | | | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | | | | Date:   Sun Apr 24 23:45:42 2011 +0400
| | | | | | | | | | | | 
| | | | | | | | | | | |     Fixes for fixes
| | | | | | | | | | | | 
| | | | | | | | | | | | M	src/libshogun/evaluation/ROCEvaluation.cpp
| | | | | | | | | | | |             
| * | | | | | | | | | | commit f84bbb5ad9493d67659eeed22ef6ab479d081b0a
| | | | | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | | | | Date:   Sun Apr 24 23:42:44 2011 +0400
| | | | | | | | | | | | 
| | | | | | | | | | | |     Various fixes for CROCEvaluation class implementation
| | | | | | | | | | | | 
| | | | | | | | | | | | M	src/libshogun/evaluation/ROCEvaluation.cpp
| | | | | | | | | | | |             
| * | | | | | | | | | | commit 205b58c1e9bc5f7611c7464c279d99deab0880c6
| | | | | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | | | | Date:   Sat Apr 23 22:53:03 2011 +0400
| | | | | | | | | | | | 
| | | | | | | | | | | |     Integrated CROCEvaluation to modular interfaces
| | | | | | | | | | | | 
| | | | | | | | | | | | M	src/modular/Evaluation.i
| | | | | | | | | | | |             
| * | | | | | | | | | | commit 9a944c087500b1e7431a6eee07f50badc9279748
| | | | | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | | | | Date:   Sat Apr 23 22:52:37 2011 +0400
| | | | | | | | | | | | 
| | | | | | | | | | | |     Added CROCEvaluation class for evaluating ROC curve and auROC
| | | | | | | | | | | | 
| | | | | | | | | | | | A	src/libshogun/evaluation/ROCEvaluation.cpp
| | | | | | | | | | | | A	src/libshogun/evaluation/ROCEvaluation.h
| | | | | | | | | | | |               
* | | | | | | | | | | |   commit f75fb0b02504325921d901fa6acc2328cbac9d72
|\ \ \ \ \ \ \ \ \ \ \ \  Merge: 7e1214f e6cec42
| | | | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | | | Date:   Sun Apr 24 22:48:41 2011 +0200
| | | | | | | | | | | | | 
| | | | | | | | | | | | |     Merge branch 'master' of git://github.com/cwidmer/shogun
| | | | | | | | | | | | |              
| * | | | | | | | | | | | commit e6cec423b06a5db5eb69828ce8e0187f68f8a97e
| | | | | | | | | | | | | Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| | | | | | | | | | | | | Date:   Sun Apr 24 11:28:19 2011 +0200
| | | | | | | | | | | | | 
| | | | | | | | | | | | |     merged old changes from local svn repo into git repo
| | | | | | | | | | | | | 
| | | | | | | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| | | | | | | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVM.h
| | | | | | | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | | | | | | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| | | | | | | | | | | | |                
* | | | | | | | | | | | |   commit 7e1214ff646057f9df41896e38022d736dbd3e66
|\ \ \ \ \ \ \ \ \ \ \ \ \  Merge: 621c7f9 bd60ad6
| |_|_|_|_|_|_|_|_|_|_|_|/  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | | | | | | | | | |   Date:   Thu Apr 21 21:27:31 2011 +0200
| | | | | | | | | | | | |   
| | | | | | | | | | | | |       Merge branch 'master' of https://github.com/lionelc/shogun
| | | | | | | | | | | | |              
| * | | | | | | | | | | | commit bd60ad6ddcb31e535522587b794a5057ceb8ed95
| | | | | | | | | | | | | Author: lionelc <ljiang@cct.lsu.edu>
| | | | | | | | | | | | | Date:   Thu Apr 21 15:14:07 2011 -0400
| | | | | | | | | | | | | 
| | | | | | | | | | | | |     minor changes -- fixed whitespace issues
| | | | | | | | | | | | | 
| | | | | | | | | | | | | M	src/libshogun/kernel/DistanceKernel.cpp
| | | | | | | | | | | | | M	src/libshogun/kernel/KernelNormalizer.h
| | | | | | | | | | | | | M	src/libshogun/kernel/SpectrumRBFKernel.h
| | | | | | | | | | | | |              
| * | | | | | | | | | | | commit 928a0dc5178c356554574ed27d54d52e97dfc921
| | | | | | | | | | | | | Author: lionelc <ljiang@cct.lsu.edu>
| | | | | | | | | | | | | Date:   Wed Apr 20 17:05:30 2011 -0400
| | | | | | | | | | | | | 
| | | | | | | | | | | | |     fix an error
| | | | | | | | | | | | | 
| | | | | | | | | | | | | M	src/libshogun/kernel/KernelNormalizer.h
| | | | | | | | | | | | |              
| * | | | | | | | | | | | commit 4f45f39f6df8ad4c94b1062df4b8e09d364a795e
| | | | | | | | | | | | | Author: lionelc <ljiang@cct.lsu.edu>
| | | | | | | | | | | | | Date:   Wed Apr 20 14:24:07 2011 -0400
| | | | | | | | | | | | | 
| | | | | | | | | | | | |     a minor modification: remove a "SG_UNSTABLE" statement
| | | | | | | | | | | | | 
| | | | | | | | | | | | | M	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
| | | | | | | | | | | | |              
| * | | | | | | | | | | | commit 63fdbc6f997d4d01d85e65b95d2f5cb9bc6fc698
| | | | | | | | | | | | | Author: lionelc <ljiang@cct.lsu.edu>
| | | | | | | | | | | | | Date:   Tue Apr 19 16:48:04 2011 -0400
| | | | | | | | | | | | | 
| | | | | | | | | | | | |     fill the blank (serialization) in TensorProductPairKernel.cpp
| | | | | | | | | | | | | 
| | | | | | | | | | | | | M	src/libshogun/kernel/TensorProductPairKernel.cpp
| | | | | | | | | | | | |              
| * | | | | | | | | | | | commit 8645931459aeac37697fafaa78679c3494ff9fa8
| | | | | | | | | | | | | Author: lionelc <ljiang@cct.lsu.edu>
| | | | | | | | | | | | | Date:   Tue Apr 19 16:08:13 2011 -0400
| | | | | | | | | | | | | 
| | | | | | | | | | | | |     added the serialization support in the same way for other classes in libshogun/kernel following yesterday's changes
| | | | | | | | | | | | | 
| | | | | | | | | | | | | M	src/libshogun/kernel/DistanceKernel.cpp
| | | | | | | | | | | | | M	src/libshogun/kernel/DistanceKernel.h
| | | | | | | | | | | | | M	src/libshogun/kernel/GaussianMatchStringKernel.cpp
| | | | | | | | | | | | | M	src/libshogun/kernel/GaussianMatchStringKernel.h
| | | | | | | | | | | | | M	src/libshogun/kernel/GaussianShortRealKernel.cpp
| | | | | | | | | | | | | M	src/libshogun/kernel/GaussianShortRealKernel.h
| | | | | | | | | | | | | M	src/libshogun/kernel/HistogramIntersectionKernel.cpp
| | | | | | | | | | | | | M	src/libshogun/kernel/HistogramIntersectionKernel.h
| | | | | | | | | | | | | M	src/libshogun/kernel/Kernel.cpp
| | | | | | | | | | | | | M	src/libshogun/kernel/Kernel.h
| | | | | | | | | | | | | M	src/libshogun/kernel/KernelNormalizer.h
| | | | | | | | | | | | | M	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
| | | | | | | | | | | | | M	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
| | | | | | | | | | | | | M	src/libshogun/kernel/RegulatoryModulesStringKernel.h
| | | | | | | | | | | | | M	src/libshogun/kernel/SNPStringKernel.cpp
| | | | | | | | | | | | | M	src/libshogun/kernel/SNPStringKernel.h
| | | | | | | | | | | | | M	src/libshogun/kernel/SpectrumMismatchRBFKernel.cpp
| | | | | | | | | | | | | M	src/libshogun/kernel/SpectrumMismatchRBFKernel.h
| | | | | | | | | | | | | M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| | | | | | | | | | | | | M	src/libshogun/kernel/SpectrumRBFKernel.h
| | | | | | | | | | | | | M	src/libshogun/kernel/TensorProductPairKernel.cpp
| | | | | | | | | | | | | M	src/libshogun/kernel/TensorProductPairKernel.h
| | | | | | | | | | | | |              
| * | | | | | | | | | | | commit ac8d700c693063acd498023fa4449e9219b48ea4
| | |_|/ / / / / / / / /  Author: lionelc <ljiang@cct.lsu.edu>
| |/| | | | | | | | | |   Date:   Mon Apr 18 05:36:20 2011 -0400
| | | | | | | | | | | |   
| | | | | | | | | | | |       some changes w.r.t parameter registration
| | | | | | | | | | | |       1. added an individual and virtual function register_param() -- separate from init() and becomes *protected* for now --- changed in Kernel.h & cpp
| | | | | | | | | | | |       2. added serialization support in the same way for SpectrumRBFKernel.h & cpp
| | | | | | | | | | | |   
| | | | | | | | | | | |   M	src/libshogun/kernel/Kernel.cpp
| | | | | | | | | | | |   M	src/libshogun/kernel/Kernel.h
| | | | | | | | | | | |   M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| | | | | | | | | | | |   M	src/libshogun/kernel/SpectrumRBFKernel.h
| | | | | | | | | | | |             
* | | | | | | | | | | | commit 621c7f978f0224a607f7c3de221e4dc9285d8963
| |_|/ / / / / / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | | | | | | | |   Date:   Thu Apr 21 20:50:24 2011 +0200
| | | | | | | | | | |   
| | | | | | | | | | |       fix DPOTRI <-> DPOTRF typo
| | | | | | | | | | |   
| | | | | | | | | | |   M	src/libshogun/lib/lapack.cpp
| | | | | | | | | | |              
* | | | | | | | | | |   commit 6ef3e7d7f19f94b147c8c567bb16fa622781a3a4
|\ \ \ \ \ \ \ \ \ \ \  Merge: 8dd9d87 c735498
| | |/ / / / / / / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |/| | | | | | | | |   Date:   Thu Apr 21 21:25:35 2011 +0400
| | | | | | | | | | |   
| | | | | | | | | | |       Merge remote branch 'upstream/master'
| | | | | | | | | | |            
| * | | | | | | | | | commit c735498cd0a133a8b83adf76ea2305995a5e3c93
| | |_|_|_|_|_|_|_|/  Author: Alesis Novik <alesisnov@gmail.com>
| |/| | | | | | | |   Date:   Thu Apr 21 06:53:30 2011 +0100
| | | | | | | | | |   
| | | | | | | | | |       Changes to Gaussian to compute the log PDF first
| | | | | | | | | |   
| | | | | | | | | |   M	src/libshogun/distributions/Gaussian.cpp
| | | | | | | | | |   M	src/libshogun/distributions/Gaussian.h
| | | | | | | | | |             
| * | | | | | | | |   commit 02c32c330d728cceb3c66e6cee1a2de863d0e680
| |\ \ \ \ \ \ \ \ \  Merge: 6355705 c3d602c
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Wed Apr 20 23:43:02 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     Merge branch 'master' of https://github.com/SergeyLisitsyn/shogun
| | | | | | | | | | |            
| * | | | | | | | | | commit 635570501641d47988ab3c64a0ebe1d52c42fd0f
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Wed Apr 20 22:42:44 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     turn total_size into size_t type (array can be >2GB!) and add
| | | | | | | | | | |     whitespaces to improve readability
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/lib/BinaryFile.cpp
| | | | | | | | | | |              
| * | | | | | | | | |   commit c332244848f3df2fc04021a4ed83841682cadedb
| |\ \ \ \ \ \ \ \ \ \  Merge: 60a6071 b2ea155
| | | |_|_|_|/ / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |/| | | | | | | |   Date:   Wed Apr 20 22:35:46 2011 +0200
| | | | | | | | | | |   
| | | | | | | | | | |       Merge branch 'master' of https://github.com/mcopik/shogun
| | | | | | | | | | |       
| | | | | | | | | | |       Conflicts:
| | | | | | | | | | |       	src/libshogun/lib/BinaryFile.h
| | | | | | | | | | |            
| | * | | | | | | | | commit b2ea15508609708a3818307c29bd5bae88d469a4
| | | | | | | | | | | Author: Marcin Copik <mcopik@gmail.com>
| | | | | | | | | | | Date:   Wed Apr 20 21:45:11 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     Another stupid mistake
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/lib/BinaryFile.h
| | | | | | | | | | |            
| | * | | | | | | | | commit 28dbf884f702062b884e16a8b88be44ab5b9b74c
| | | | | | | | | | | Author: Marcin Copik <mcopik@gmail.com>
| | | | | | | | | | | Date:   Wed Apr 20 21:41:54 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     Another simple fix
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/lib/BinaryFile.h
| | | | | | | | | | |            
| | * | | | | | | | | commit 7d5e7ad9a1a1adfd6f77eba64699a6dd98796bf5
| | | | | | | | | | | Author: Marcin Copik <mcopik@gmail.com>
| | | | | | | | | | | Date:   Wed Apr 20 21:28:01 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     Fix
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/lib/BinaryFile.cpp
| | | | | | | | | | |            
| | * | | | | | | | | commit 0c42b05e375cb9c74a1685e265e19d8e80b4ff5d
| | | |_|_|_|/ / / /  Author: Marcin Copik <mcopik@gmail.com>
| | |/| | | | | | |   Date:   Wed Apr 20 21:24:28 2011 +0200
| | | | | | | | | |   
| | | | | | | | | |       Adding support for nd-arrays
| | | | | | | | | |   
| | | | | | | | | |   M	src/libshogun/lib/BinaryFile.cpp
| | | | | | | | | |   M	src/libshogun/lib/BinaryFile.h
| | | | | | | | | |   M	src/libshogun/lib/DataType.cpp
| | | | | | | | | |   M	src/libshogun/lib/DataType.h
| | | | | | | | | |           
* | | | | | | | | | commit 8dd9d87f9a46b2dd80735dd3687686dffabe3eec
| | | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | | Date:   Thu Apr 21 21:25:22 2011 +0400
| | | | | | | | | | 
| | | | | | | | | |     Added helper measure classes to modular interface
| | | | | | | | | | 
| | | | | | | | | | M	src/modular/Evaluation.i
| | | | | | | | | |           
* | | | | | | | | | commit 208365a7294b6455de0fbd8c42c0fc0ae6839c54
| |_|/ / / / / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|/| | | | | | | |   Date:   Thu Apr 21 16:59:41 2011 +0400
| | | | | | | | |   
| | | | | | | | |       Fixed doc for ContingencyTableEvaluation, added some helper classes
| | | | | | | | |   
| | | | | | | | |   M	src/libshogun/evaluation/ContingencyTableEvaluation.h
| | | | | | | | |          
* | | | | | | | | commit c3d602c80bc1a73d743696160160dbf749de3bd7
| | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | Date:   Thu Apr 21 01:41:37 2011 +0400
| | | | | | | | | 
| | | | | | | | |     Fixed shameful mistypes
| | | | | | | | | 
| | | | | | | | | M	src/libshogun/evaluation/ContingencyTableEvaluation.cpp
| | | | | | | | | M	src/libshogun/evaluation/ContingencyTableEvaluation.h
| | | | | | | | |          
* | | | | | | | | commit ed5f12fa05632c4d6c999057dad49346530d54d1
|/ / / / / / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | |   Date:   Thu Apr 21 01:30:16 2011 +0400
| | | | | | | |   
| | | | | | | |       Added documentation, added precision measure
| | | | | | | |   
| | | | | | | |   M	src/libshogun/evaluation/ContingencyTableEvaluation.cpp
| | | | | | | |   M	src/libshogun/evaluation/ContingencyTableEvaluation.h
| | | | | | | |         
* | | | | | | | commit 60a607164b138810318f36f9ab27fa6a6c200c81
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Wed Apr 20 14:34:02 2011 +0200
| | | | | | | | 
| | | | | | | |     new tests are required
| | | | | | | | 
| | | | | | | | M	data
| | | | | | | |         
* | | | | | | | commit 0591e84d09d0a31c6a7986e97cf94320090b97dc
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Wed Apr 20 14:09:03 2011 +0200
| | | | | | | | 
| | | | | | | |     kernel should get 2 train objects
| | | | | | | | 
| | | | | | | | M	examples/undocumented/python_modular/kernel_salzberg_word_string_modular.py
| | | | | | | |         
* | | | | | | | commit 7ef69616f2d761d32daaa9c714153e8d65209e05
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Wed Apr 20 14:08:01 2011 +0200
| | | | | | | | 
| | | | | | | |     fix a long standing bug / crasher
| | | | | | | |     
| | | | | | | |     free_feature_vector was called with the wrong feature object
| | | | | | | | 
| | | | | | | | M	src/libshogun/kernel/SalzbergWordStringKernel.cpp
| | | | | | | |         
* | | | | | | | commit c8816f509a661ed53c166d843ebfb7dcb6b8d75a
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Wed Apr 20 11:58:54 2011 +0200
| | | | | | | | 
| | | | | | | |     use only single threaded svrlight
| | | | | | | | 
| | | | | | | | M	examples/undocumented/python_modular/regression_svrlight_modular.py
| | | | | | | |         
* | | | | | | | commit e9a7f862e96e2e77fd4f8216a6ceeea5ac380c5a
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Wed Apr 20 11:58:05 2011 +0200
| | | | | | | | 
| | | | | | | |     fix larank example (always C=1 was used before)
| | | | | | | | 
| | | | | | | | M	examples/undocumented/python_modular/classifier_larank_modular.py
| | | | | | | |         
* | | | | | | | commit 76bf7f75b1ddf7701606e02b7ce08fe48f023fb4
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Wed Apr 20 11:56:03 2011 +0200
| | | | | | | | 
| | | | | | | |     Fix array out of bound errors as detected by valgrind and uninitialized memory reads.
| | | | | | | | 
| | | | | | | | M	src/libshogun/kernel/OligoStringKernel.cpp
| | | | | | | | M	src/libshogun/kernel/OligoStringKernel.h
| | | | | | | |         
* | | | | | | | commit 9b623544135234b2806d2bd74afdb50f1ed5b3e5
| |_|_|_|_|_|/  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | | | |   Date:   Wed Apr 20 10:46:34 2011 +0200
| | | | | | |   
| | | | | | |       add example for avg perceptron
| | | | | | |   
| | | | | | |   A	examples/undocumented/python_modular/classifier_averaged_perceptron_modular.py
| | | | | | |        
* | | | | | | commit 080b05b6e42163a47a85ae26c472cb8e00c03613
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Tue Apr 19 17:32:46 2011 +0200
| | | | | | | 
| | | | | | |     update data to include new tests
| | | | | | | 
| | | | | | | M	data
| | | | | | |        
* | | | | | | commit 708001fc848069e3a06e962d75e3c7da537a487a
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Tue Apr 19 17:30:09 2011 +0200
| | | | | | | 
| | | | | | |     add a --debug option to see where things fail
| | | | | | | 
| | | | | | | M	testsuite/python_modular/tester.py
| | | | | | |        
* | | | | | | commit e5fd6cb2ce507fa981b62cc63ee156a806cd19b2
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Tue Apr 19 16:01:25 2011 +0200
| | | | | | | 
| | | | | | |     fix serialization and a crasher when d > len
| | | | | | | 
| | | | | | | M	src/libshogun/kernel/ANOVAKernel.cpp
| | | | | | | M	src/libshogun/kernel/ANOVAKernel.h
| | | | | | |        
* | | | | | | commit a5451f1e5d89fab4f052c6ac2bc86d3579ae4abc
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Tue Apr 19 16:01:04 2011 +0200
| | | | | | | 
| | | | | | |     whitespace changes
| | | | | | | 
| | | | | | | M	examples/undocumented/python_modular/kernel_anova_modular.py
| | | | | | |        
* | | | | | | commit f2288bde06d9f5a0b898a167719a2f9e2620e2f7
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Tue Apr 19 12:08:36 2011 +0200
| | | | | | | 
| | | | | | |     coding style fixes in ANOVAKernel
| | | | | | | 
| | | | | | | M	src/libshogun/kernel/ANOVAKernel.cpp
| | | | | | | M	src/libshogun/kernel/ANOVAKernel.h
| | | | | | |        
* | | | | | | commit 45fbb3ddb2efdf3a0a8a3cd96607e44811b37aa7
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Tue Apr 19 11:57:57 2011 +0200
| | | | | | | 
| | | | | | |     remove test cause and change function name to match filename
| | | | | | | 
| | | | | | | M	examples/undocumented/python_modular/classifier_gaussiannaivebayes_modular.py
| | | | | | |        
* | | | | | | commit 4a754ba509c761c64f4e68c489fc68aee519f819
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Tue Apr 19 11:39:05 2011 +0200
| | | | | | | 
| | | | | | |     don't return anything just now - HISTOGRAM is not exposed to the outside
| | | | | | | 
| | | | | | | M	examples/undocumented/python/distribution_histogram.py
| | | | | | |        
* | | | | | | commit 51a285c8d227d464e46552c73f71a79b54c0bc0c
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Tue Apr 19 10:02:21 2011 +0200
| | | | | | | 
| | | | | | |     fix include paths to be relative to libshogun/
| | | | | | | 
| | | | | | | M	src/libshogun/lib/AsciiFile.h
| | | | | | | M	src/libshogun/lib/BinaryFile.h
| | | | | | | M	src/libshogun/lib/BitString.h
| | | | | | | M	src/libshogun/lib/Compressor.h
| | | | | | | M	src/libshogun/lib/DynInt.h
| | | | | | | M	src/libshogun/lib/GCArray.h
| | | | | | | M	src/libshogun/lib/HDF5File.h
| | | | | | | M	src/libshogun/lib/IndirectObject.h
| | | | | | | M	src/libshogun/lib/LibSVMFile.h
| | | | | | |        
* | | | | | | commit c2307bff9a0fc5262d30c632ab91fcf58e20bd6e
|/ / / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | |   Date:   Tue Apr 19 10:02:02 2011 +0200
| | | | | |   
| | | | | |       show how to access mc svm alphas
| | | | | |   
| | | | | |   M	examples/undocumented/matlab_and_octave/classifier_libsvmmulticlass.m
| | | | | |         
* | | | | |   commit 6d779fb70c2ba92189655e189505124c8ec16aea
|\ \ \ \ \ \  Merge: aa579f9 8d2a5ff
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Mon Apr 18 22:39:26 2011 +0200
| | | | | | | 
| | | | | | |     Merge branch 'gmm' of https://github.com/alesis/shogun
| | | | | | |        
| * | | | | | commit 8d2a5ffb147e39d6fa96496aaac818cca4a70501
| | | | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | | | Date:   Mon Apr 18 21:34:59 2011 +0100
| | | | | | | 
| | | | | | |     Improved GMM.cpp formatting
| | | | | | | 
| | | | | | | M	src/libshogun/clustering/GMM.cpp
| | | | | | |        
| * | | | | | commit 18132ed01228f072c06eaaf0e364def44ac34d45
| | | | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | | | Date:   Mon Apr 18 21:25:08 2011 +0100
| | | | | | | 
| | | | | | |     Added newlines to GMM.cpp where needed
| | | | | | | 
| | | | | | | M	src/libshogun/clustering/GMM.cpp
| | | | | | |        
| * | | | | | commit d981fb6f06f589bb5f06c08293923846a35b8c37
| | | | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | | | Date:   Mon Apr 18 19:58:09 2011 +0100
| | | | | | | 
| | | | | | |     Fixes for GMM.cpp
| | | | | | | 
| | | | | | | M	src/libshogun/clustering/GMM.cpp
| | | | | | |        
| * | | | | | commit 2fc753cdb38ee353e4e108e37e04088cfc107e0d
| | |_|_|_|/  Author: Alesis Novik <alesisnov@gmail.com>
| |/| | | |   Date:   Mon Apr 18 19:12:00 2011 +0100
| | | | | |   
| | | | | |       Added GMM with fixes
| | | | | |   
| | | | | |   A	src/libshogun/clustering/GMM.cpp
| | | | | |   A	src/libshogun/clustering/GMM.h
| | | | | |         
* | | | | |   commit aa579f934a89e981216d043efec0cf215340cb54
|\ \ \ \ \ \  Merge: 1be7c44 0e40f95
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Mon Apr 18 22:38:31 2011 +0200
| | | | | | | 
| | | | | | |     Merge branch 'master' of https://github.com/alesis/shogun
| | | | | | |        
| * | | | | | commit 0e40f95ea071c86a781097dc90ab65aa6dce4f16
| | | | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | | | Date:   Mon Apr 18 21:29:19 2011 +0100
| | | | | | | 
| | | | | | |     Improved readability of Gaussian.cpp
| | | | | | | 
| | | | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | | |        
| * | | | | | commit 940d6bbe774115cc4e8ce66795764e7d590460b6
| | | | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | | | Date:   Mon Apr 18 17:32:22 2011 +0100
| | | | | | | 
| | | | | | |     Fixed Gaussian.cpp
| | | | | | | 
| | | | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | | |        
| * | | | | | commit 3676086a20abd88d6c1ba8c54f526508f1db7381
| | | | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | | | Date:   Mon Apr 18 17:30:21 2011 +0100
| | | | | | | 
| | | | | | |     Removed GMM from this pull request
| | | | | | | 
| | | | | | | D	src/libshogun/clustering/GMM.cpp
| | | | | | | D	src/libshogun/clustering/GMM.h
| | | | | | |          
| * | | | | |   commit 8f3afd82190ad1c738807b61a6c8c2b101f54e2c
| |\ \ \ \ \ \  Merge: bd74574 152a967
| | |/ / / / /  Author: Alesis Novik <alesisnov@gmail.com>
| | | | | | |   Date:   Mon Apr 18 17:27:39 2011 +0100
| | | | | | |   
| | | | | | |       Merge remote branch 'upstream/master'
| | | | | | |        
| * | | | | | commit bd74574be7e6e47c83bba97173fa5a3c62d8cd0d
| | |/ / / /  Author: Alesis Novik <alesisnov@gmail.com>
| |/| | | |   Date:   Mon Apr 18 06:13:40 2011 +0100
| | | | | |   
| | | | | |       A very simple and basic implementation of EM for GMM and fix for Gaussian.cpp.
| | | | | |   
| | | | | |   A	src/libshogun/clustering/GMM.cpp
| | | | | |   A	src/libshogun/clustering/GMM.h
| | | | | |   M	src/libshogun/distributions/Gaussian.cpp
| | | | | |       
* | | | | | commit 1be7c44d7b9e90d11550496075a787149ce056a6
| |/ / / /  Author: Ziyuan Lin <ziyuang@gmail.com>
|/| | | |   Date:   Mon Apr 18 23:32:02 2011 +0800
| | | | |   
| | | | |       Copyright infomation revised
| | | | |   
| | | | |   M	src/libshogun/kernel/BesselKernel.h
| | | | |      
* | | | | commit 152a967d4ba0c09417c4bdf3081dc715a2ae27c3
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Apr 18 16:47:12 2011 +0200
| | | | | 
| | | | |     fix include paths to be relative to libshogun/
| | | | | 
| | | | | M	src/libshogun/evaluation/BinaryClassEvaluation.h
| | | | | M	src/libshogun/evaluation/ContingencyTableEvaluation.cpp
| | | | | M	src/libshogun/evaluation/ContingencyTableEvaluation.h
| | | | | M	src/libshogun/evaluation/Evaluation.h
| | | | | M	src/libshogun/evaluation/MeanSquaredError.cpp
| | | | | M	src/libshogun/evaluation/MeanSquaredError.h
| | | | | M	src/libshogun/evaluation/MulticlassAccuracy.cpp
| | | | | M	src/libshogun/evaluation/MulticlassAccuracy.h
| | | | |        
* | | | |   commit b65b23c738e1478a69115e3db0d023bd0a9942b3
|\ \ \ \ \  Merge: fec377d e998b23
| |_|_|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | |   Date:   Mon Apr 18 16:42:06 2011 +0200
| | | | |   
| | | | |       Merge branch 'master' of https://github.com/SergeyLisitsyn/shogun
| | | | |      
| * | | | commit e998b23d16e38c4654dc093ed5092462e3f00ada
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 17:23:28 2011 +0400
| | | | | 
| | | | |     Fixed modular interface
| | | | | 
| | | | | M	src/modular/Evaluation.i
| | | | |      
| * | | | commit 616455e34f14be6da504c9bdfb67bac5b6db23bb
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 17:23:03 2011 +0400
| | | | | 
| | | | |     Various fixes of evaluation
| | | | | 
| | | | | M	src/libshogun/evaluation/ContingencyTableEvaluation.cpp
| | | | | M	src/libshogun/evaluation/ContingencyTableEvaluation.h
| | | | | M	src/libshogun/evaluation/Evaluation.h
| | | | | D	src/libshogun/evaluation/HelperEvaluationClasses.h
| | | | | M	src/libshogun/evaluation/MulticlassAccuracy.h
| | | | |      
| * | | | commit 4e9460661284ea70b8688f9897fdf73b289b19b7
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 16:28:09 2011 +0400
| | | | | 
| | | | |     Added HelperEvaluationClasses
| | | | | 
| | | | | A	src/libshogun/evaluation/HelperEvaluationClasses.h
| | | | |      
| * | | | commit 10e7a9940f9b0ce58b4f43e3416b5b53d83efeaa
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 16:27:32 2011 +0400
| | | | | 
| | | | |     Added CContingencyTableEvaluation class
| | | | | 
| | | | | A	src/libshogun/evaluation/ContingencyTableEvaluation.cpp
| | | | | A	src/libshogun/evaluation/ContingencyTableEvaluation.h
| | | | |      
| * | | | commit 25531d2c510ff79c4ae3e083922a407dc0caf44b
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 15:42:59 2011 +0400
| | | | | 
| | | | |     Fixed modular interface for Evaluation
| | | | | 
| | | | | M	src/modular/Evaluation.i
| | | | |      
| * | | | commit 7cf067cb790106a10512c5267393e339a587593b
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 15:42:28 2011 +0400
| | | | | 
| | | | |     Changes in design of 'evaluation'
| | | | | 
| | | | | D	src/libshogun/evaluation/Accuracy.h
| | | | | D	src/libshogun/evaluation/BinaryClassEvaluation.cpp
| | | | | M	src/libshogun/evaluation/BinaryClassEvaluation.h
| | | | |      
| * | | | commit db85186b5814a8990c616f3e3e1c3a04014dbbce
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 12:50:55 2011 +0400
| | | | | 
| | | | |     Fixed BinaryClassEvaluation
| | | | | 
| | | | | M	src/libshogun/evaluation/BinaryClassEvaluation.cpp
| | | | |      
| * | | | commit b4b0a915195db32f5a8cf1601f31fb49dec44fbe
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 12:50:22 2011 +0400
| | | | | 
| | | | |     Redesigned binary class evaluation
| | | | | 
| | | | | D	src/libshogun/evaluation/Accuracy.cpp
| | | | | M	src/libshogun/evaluation/Accuracy.h
| | | | | D	src/libshogun/evaluation/BalancedError.cpp
| | | | | D	src/libshogun/evaluation/BalancedError.h
| | | | | A	src/libshogun/evaluation/BinaryClassEvaluation.cpp
| | | | | A	src/libshogun/evaluation/BinaryClassEvaluation.h
| | | | |      
| * | | | commit bc5f03b6f99356b2f75611acb2ddfb1aae1b399d
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 12:03:33 2011 +0400
| | | | | 
| | | | |     Fixed CBalancedError and added get_scores()
| | | | | 
| | | | | M	src/libshogun/evaluation/BalancedError.cpp
| | | | | M	src/libshogun/evaluation/BalancedError.h
| | | | |      
| * | | | commit 1c22e3bf0adb04373fe53e13b0d863236b879975
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 01:46:13 2011 +0400
| | | | | 
| | | | |     Integrated CBalancedError to modular interface
| | | | | 
| | | | | M	src/modular/Evaluation.i
| | | | |      
| * | | | commit 501d5510352704844d26eeb53d876001a3d7f176
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 01:45:39 2011 +0400
| | | | | 
| | | | |     Added CBalancedError class for evaluating balanced error
| | | | | 
| | | | | A	src/libshogun/evaluation/BalancedError.cpp
| | | | | A	src/libshogun/evaluation/BalancedError.h
| | | | |      
| * | | | commit d329a4036bed89ae1e9d0c82ea1dcd5783761302
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 00:15:26 2011 +0400
| | | | | 
| | | | |     Fixed doc for CAccuracy and CMulticlassAccuracy
| | | | | 
| | | | | M	src/libshogun/evaluation/Accuracy.h
| | | | | M	src/libshogun/evaluation/MulticlassAccuracy.h
| | | | |      
| * | | | commit d970fabc0af3fab77537040d0e5c9e8671f02b67
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Apr 17 23:37:06 2011 +0400
| | | | | 
| | | | |     Fixed description of CAccuracy
| | | | | 
| | | | | M	src/libshogun/evaluation/Accuracy.h
| | | | |        
| * | | |   commit a4c53ae0fa12cb0851cbaf2303c6d489e9ccca9e
| |\ \ \ \  Merge: bfb4cf5 47f74d3
| | |/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | |   Date:   Sun Apr 17 23:30:49 2011 +0400
| | | | |   
| | | | |       Merge remote branch 'upstream/master'
| | | | |      
| * | | | commit bfb4cf5b6a2ed61cad6cfe9a49eac6096fea52fe
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Apr 17 23:29:49 2011 +0400
| | | | | 
| | | | |     Integrated CMulticlassAccuracy to modular interface
| | | | | 
| | | | | M	src/modular/Evaluation.i
| | | | |      
| * | | | commit d650843a2a060993298161589a909fd664f6b708
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Apr 17 23:28:25 2011 +0400
| | | | | 
| | | | |     Removed Evaluation.cpp
| | | | | 
| | | | | D	src/libshogun/evaluation/Evaluation.cpp
| | | | |      
| * | | | commit 777642a214b79a32b085ec52280ea5a4d0619196
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Apr 17 23:27:51 2011 +0400
| | | | | 
| | | | |     Introduced CMulticlassAccuracy for estimating accuracy of multiclass
| | | | |     labeling
| | | | | 
| | | | | A	src/libshogun/evaluation/MulticlassAccuracy.cpp
| | | | | A	src/libshogun/evaluation/MulticlassAccuracy.h
| | | | |      
| * | | | commit cadd0f0d366db1e088a4db747fdd00da0c7c6772
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Apr 17 23:26:16 2011 +0400
| | | | | 
| | | | |     Fixed CAccuracy for proper evaluation
| | | | | 
| | | | | M	src/libshogun/evaluation/Accuracy.cpp
| | | | | M	src/libshogun/evaluation/Accuracy.h
| | | | |      
| * | | | commit c420c8fdca5f671446231f9f4083483b0f3c3d32
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Apr 17 23:19:11 2011 +0400
| | | | | 
| | | | |     Fixed CAccuracy, now supports only 2-class evaluation
| | | | | 
| | | | | M	src/libshogun/evaluation/Accuracy.cpp
| | | | | M	src/libshogun/evaluation/Accuracy.h
| | | | |      
| * | | | commit 451cf8d17b34a93be91a149d5c181d7a0e481876
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Apr 17 23:05:23 2011 +0400
| | | | | 
| | | | |     Modified naming and some implementation issues of CEvaluation
| | | | | 
| | | | | M	src/libshogun/evaluation/Accuracy.cpp
| | | | | M	src/libshogun/evaluation/Accuracy.h
| | | | | M	src/libshogun/evaluation/Evaluation.h
| | | | | M	src/libshogun/evaluation/MeanSquaredError.cpp
| | | | | M	src/libshogun/evaluation/MeanSquaredError.h
| | | | |      
| * | | | commit f36b6e113d96a6b0bfdd58385627d655538c4b82
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Apr 17 20:36:25 2011 +0400
| | | | | 
| | | | |     Fixed modular interface config for Evaluation
| | | | | 
| | | | | M	src/modular/Evaluation.i
| | | | |      
| * | | | commit 0e6c9282ac5bd206c793f69370cc58cd22bb29fd
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Apr 17 20:35:49 2011 +0400
| | | | | 
| | | | |     Some fixes for Evaluation base class
| | | | | 
| | | | | A	src/libshogun/evaluation/Evaluation.cpp
| | | | | M	src/libshogun/evaluation/Evaluation.h
| | | | |        
| * | | |   commit 967a72ce43cf4111c2ce94a78c765e51902b8c7d
| |\ \ \ \  Merge: 69a5736 62093ee
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Sun Apr 17 19:15:21 2011 +0400
| | | | | | 
| | | | | |     Merge branch 'master' of github.com:SergeyLisitsyn/shogun
| | | | | |       
| | * | | | commit 62093eea803d3c508f4df07c1c6162d4a9775466
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Sun Apr 17 13:35:02 2011 +0400
| | | | | | 
| | | | | |     Removed unnecessary typemap added earlier
| | | | | | 
| | | | | | M	src/modular/Evaluation.i
| | | | | |         
| * | | | |   commit 69a5736a18127b4a906f8db300321279d7713937
| |\ \ \ \ \  Merge: 051923b 3cea610
| | |/ / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |/| | | |   Date:   Sun Apr 17 19:14:14 2011 +0400
| | | | | |   
| | | | | |       Merge remote branch 'upstream/master'
| | | | | |       
| * | | | | commit 051923bd05fe5b94358bfc06d39f23388d231bc9
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Sun Apr 17 13:25:16 2011 +0400
| | | | | | 
| | | | | |     Integrated CAccuracy and CMeanSquaredError to modular interfaces
| | | | | | 
| | | | | | M	src/modular/Evaluation.i
| | | | | |       
| * | | | | commit bb2d5e4d1b6c8d400b5e6df4073d2ff3db9ada31
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Sun Apr 17 13:24:40 2011 +0400
| | | | | | 
| | | | | |     Added CMeanSquaredError class for estimating regression models
| | | | | | 
| | | | | | A	src/libshogun/evaluation/MeanSquaredError.cpp
| | | | | | A	src/libshogun/evaluation/MeanSquaredError.h
| | | | | |       
| * | | | | commit 6d7d6306c380bf9ca3560281c00201e5c1214c4b
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Sun Apr 17 13:23:25 2011 +0400
| | | | | | 
| | | | | |     Added CAccuracy class for evaluating classifiers accuracy
| | | | | | 
| | | | | | A	src/libshogun/evaluation/Accuracy.cpp
| | | | | | A	src/libshogun/evaluation/Accuracy.h
| | | | | |       
| * | | | | commit c3d2bed87db52515fac678730fc2624608b22365
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Sun Apr 17 13:22:14 2011 +0400
| | | | | | 
| | | | | |     Added CEvaluation base class
| | | | | | 
| | | | | | A	src/libshogun/evaluation/Evaluation.h
| | | | | |       
* | | | | | commit fec377d97a711f87009f9c25cf87343e6b6de5f3
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Mon Apr 18 11:47:30 2011 +0200
| | | | | | 
| | | | | |     add bessel kernel thanks ziyuan for the patch
| | | | | | 
| | | | | | M	src/libshogun/kernel/BesselKernel.cpp
| | | | | | M	src/libshogun/kernel/BesselKernel.h
| | | | | |       
* | | | | | commit 7f50fde1c195a977cfd6dbb0b93ad435294ccb50
| |_|/ / /  Author: Ziyuan Lin <ziyuang@gmail.com>
|/| | | |   Date:   Mon Apr 18 03:39:47 2011 +0800
| | | | |   
| | | | |       Implement Bessel kernel
| | | | |   
| | | | |   A	src/libshogun/kernel/BesselKernel.cpp
| | | | |   A	src/libshogun/kernel/BesselKernel.h
| | | | |   M	src/libshogun/kernel/DistanceKernel.h
| | | | |   M	src/libshogun/kernel/Kernel.h
| | | | |        
* | | | |   commit 47f74d372055436896f31241e725b81e3d7fa238
|\ \ \ \ \  Merge: 3cea610 68a9604
| |_|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | |   Date:   Sun Apr 17 21:26:31 2011 +0200
| | | | |   
| | | | |       Merge branch 'master' of https://github.com/alesis/shogun
| | | | |      
| * | | | commit 68a96042837807a0637f2d57f65442d89ddd3b5e
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Sun Apr 17 14:37:02 2011 +0100
| | | | | 
| | | | |     Changed constructor and init for PCACut, changed GUIPreProc so it would compile
| | | | | 
| | | | | M	src/libshogun/preproc/PCACut.cpp
| | | | | M	src/libshogun/preproc/PCACut.h
| | | | | M	src/libshogunui/GUIPreProc.cpp
| | | | |      
| * | | | commit ed0c21b9c804175aee7254ff5a6692f8591cda22
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Sat Apr 16 21:56:15 2011 +0100
| | | | | 
| | | | |     more formatting issues fixed
| | | | | 
| | | | | M	src/libshogun/lib/lapack.cpp
| | | | |      
| * | | | commit 0abc90d045d21f5899ed95014440ffb56cd33fcc
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Sat Apr 16 21:54:19 2011 +0100
| | | | | 
| | | | |     Whitespace issue and bracket formatting fixed
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | | M	src/libshogun/lib/lapack.cpp
| | | | |      
| * | | | commit 295a9b32e03fb3bb0dfb9a0373408a28d80e0b46
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Sat Apr 16 21:50:08 2011 +0100
| | | | | 
| | | | |     Added Gaussian PDF formula to description
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | |      
| * | | | commit 35a0dc97a5ebb6784fe3bebef1174f964315321c
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Sat Apr 16 17:26:21 2011 +0100
| | | | | 
| | | | |     Fixed merging issues
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | |        
| * | | |   commit 2c5197495753157e70dc1164beb63f89b32ff9aa
| |\ \ \ \  Merge: 69d407c ebf4cf6
| | | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | | Date:   Sat Apr 16 17:22:22 2011 +0100
| | | | | | 
| | | | | |     Merge remote branch 'upstream/master'
| | | | | |     
| | | | | |     Conflicts:
| | | | | |     	src/libshogun/distributions/Gaussian.h
| | | | | |       
| * | | | | commit 69d407cdfad0da9d299b5bc99a60e77a04d799a9
| | | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | | Date:   Sat Apr 16 16:37:16 2011 +0100
| | | | | | 
| | | | | |     Better documentation for Gaussian.h
| | | | | | 
| | | | | | M	src/libshogun/distributions/Gaussian.h
| | | | | |       
| * | | | | commit 562074dfc18d803992432d70d619311011162094
| | | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | | Date:   Sat Apr 16 16:01:39 2011 +0100
| | | | | | 
| | | | | |     added ifdef HAVE_LAPACK to Gaussian so it would compile for everyone. Added different conditions for PCACut
| | | | | | 
| | | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | | M	src/libshogun/distributions/Gaussian.h
| | | | | | M	src/libshogun/lib/lapack.cpp
| | | | | | M	src/libshogun/lib/lapack.h
| | | | | | M	src/libshogun/preproc/PCACut.cpp
| | | | | | M	src/libshogun/preproc/PCACut.h
| | | | | |       
* | | | | | commit 3cea610e911bdec1036dcb664c4ad43e27893036
| |_|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | |   Date:   Sun Apr 17 05:41:53 2011 +0200
| | | | |   
| | | | |       A number of coding style fixes like
| | | | |       
| | | | |       - space between for and (
| | | | |       - for loops with single statement don't need brackets
| | | | |       etc
| | | | |   
| | | | |   M	src/libshogun/classifier/GaussianNaiveBayes.cpp
| | | | |      
* | | | | commit be871a88a81f017a06478f7126295c68f0332c31
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Apr 17 03:26:17 2011 +0400
| | | | | 
| | | | |     Fixed destructor of GaussianNaiveBayes, fixed mistype in loop leading
| | | | |     to segfault in case of labels: k,k+1,...,n
| | | | | 
| | | | | M	src/libshogun/classifier/GaussianNaiveBayes.cpp
| | | | |        
* | | | |   commit 1ee51858439b0e491b5cbaf537a79da09a0c5940
|\ \ \ \ \  Merge: 9988d90 59777bf
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Sat Apr 16 22:52:03 2011 +0200
| | | | | | 
| | | | | |     Merge branch 'master' of https://github.com/kisa12012/shogun
| | | | | |       
| * | | | | commit 59777bf60d11d987afcf347ae8b61ed8b7e6b3ea
| | | | | | Author: Hidekazu Oiwa <hidekazu.oiwa@gmail.com>
| | | | | | Date:   Fri Apr 15 17:13:40 2011 +0900
| | | | | | 
| | | | | |     create Averaged Perceptron class
| | | | | | 
| | | | | | A	src/libshogun/classifier/AveragedPerceptron.cpp
| | | | | | A	src/libshogun/classifier/AveragedPerceptron.h
| | | | | | M	src/libshogun/classifier/Classifier.h
| | | | | | M	src/modular/Classifier.i
| | | | | |       
* | | | | | commit 9988d90e73960ad7a2f7ff8f5693db32bca6feaa
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Sat Apr 16 20:58:21 2011 +0200
| | | | | | 
| | | | | |     rename member variables to start with m_ to fix warnings
| | | | | | 
| | | | | | M	src/libshogun/kernel/RationalQuadraticKernel.cpp
| | | | | | M	src/libshogun/kernel/RationalQuadraticKernel.h
| | | | | |       
* | | | | | commit c8026b1f91bd04468aa6e7c6363a267f53ef5d54
| | | | | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | | | | Date:   Sat Apr 16 18:21:32 2011 +0200
| | | | | | 
| | | | | |     Configure fix
| | | | | | 
| | | | | | M	src/configure
| | | | | |       
* | | | | | commit 0911622e72293e263cfd39723735f95ee931f091
| |_|/ / /  Author: Jakub Jirku <jakub.jirku@gmail.com>
|/| | | |   Date:   Sat Apr 16 17:33:16 2011 +0200
| | | | |   
| | | | |       Mac OS BLAS and LAPACK support
| | | | |   
| | | | |   M	src/configure
| | | | |   M	src/libshogun/lib/lapack.h
| | | | |      
* | | | | commit ebf4cf6758a51bda57fabcc2b648af85f33ad8bf
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Sat Apr 16 14:44:05 2011 +0200
| | | | | 
| | | | |     Add HAVE_LAPACK checks to Gaussian distribution
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | |        
* | | | |   commit 6e6999c72fa88774c07d79c35ac8a5a5834ddac2
|\ \ \ \ \  Merge: fff70f5 c702400
| | |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | |   Date:   Sat Apr 16 11:32:34 2011 +0200
| | | | |   
| | | | |       Merge branch 'master' of https://github.com/alesis/shogun
| | | | |      
| * | | | commit c702400c9eed353766e368fd01af7c4cfa823333
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Sat Apr 16 01:40:22 2011 +0100
| | | | | 
| | | | |     Fixed
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | |      
| * | | | commit 6649160b4d3308f8a76f7c8b6f0126e6dd2e3c1a
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Fri Apr 15 00:15:58 2011 +0100
| | | | | 
| | | | |     Missed changes
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | | M	src/libshogun/features/DotFeatures.cpp
| | | | | M	src/libshogun/features/DotFeatures.h
| | | | |      
| * | | | commit 45097f7077d20648744dd900471a9b75ed70fbeb
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Thu Apr 14 23:55:39 2011 +0100
| | | | | 
| | | | |     Changes as requested
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | | M	src/libshogun/features/DotFeatures.cpp
| | | | | M	src/libshogun/features/DotFeatures.h
| | | | | M	src/libshogun/lib/Mathematics.h
| | | | |      
| * | | | commit b4ec73ae1f98fe73caa0e04c618369ea502709f8
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Thu Apr 14 20:30:34 2011 +0100
| | | | | 
| | | | |     Requested changes
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | | M	src/libshogun/features/DotFeatures.cpp
| | | | | M	src/libshogun/features/DotFeatures.h
| | | | | M	src/libshogun/lib/Mathematics.h
| | | | |      
| * | | | commit 4af1074706505770b0014b2b43713f02720129b8
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Thu Apr 14 08:42:17 2011 +0100
| | | | | 
| | | | |     Bug fix
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/lib/Mathematics.h
| | | | |      
| * | | | commit 03b9618f8777c06bedf55f79c5e464e16d51ee10
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Thu Apr 14 06:41:10 2011 +0100
| | | | | 
| | | | |     Added Gaussian training(sort of) and mean and cov functions in Mathematics
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/lib/Mathematics.h
| | | | |      
| * | | | commit 3effb792dc3ae7e0b23d2663531b61b31ca9b116
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Thu Apr 14 06:00:07 2011 +0100
| | | | | 
| | | | |     Error changes
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | |      
| * | | | commit b3ef5826f4fa388fca5739da3eda56ef0f91102c
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Thu Apr 14 05:41:40 2011 +0100
| | | | | 
| | | | |     Function for computing the Gaussian PDF added
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | |      
| * | | | commit 2285840ef967a0ef2f35a4c6bfd822b88b993d79
| | |/ /  Author: Alesis Novik <alesisnov@gmail.com>
| |/| |   Date:   Thu Apr 14 05:25:21 2011 +0100
| | | |   
| | | |       Added basic Gaussian distribution, not all methods implemented yet
| | | |   
| | | |   A	src/libshogun/distributions/Gaussian.cpp
| | | |   A	src/libshogun/distributions/Gaussian.h
| | | |     
* | | | commit fff70f595ed547ed32ad16663f2693adb3412171
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Apr 15 16:25:04 2011 +0200
| | | | 
| | | |     fix the get_name() functions in preprocs causing serialization to fail
| | | | 
| | | | M	src/libshogun/preproc/DecompressString.h
| | | | M	src/libshogun/preproc/KernelPCACut.h
| | | | M	src/libshogun/preproc/LogPlusOne.h
| | | | M	src/libshogun/preproc/NormDerivativeLem3.h
| | | | M	src/libshogun/preproc/NormOne.h
| | | | M	src/libshogun/preproc/PCACut.h
| | | | M	src/libshogun/preproc/PreProc.h
| | | | M	src/libshogun/preproc/PruneVarSubMean.h
| | | | M	src/libshogun/preproc/SimplePreProc.h
| | | | M	src/libshogun/preproc/SortUlongString.h
| | | | M	src/libshogun/preproc/SortWordString.h
| | | |     
* | | | commit 688b11c727302065743142e14d077cea353c93e9
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Apr 15 16:15:22 2011 +0200
| | | | 
| | | |     Add example for snappy compression
| | | | 
| | | | M	examples/undocumented/python_modular/features_string_char_compressed_modular.py
| | | |     
* | | | commit d5998c54939053d64c46364444049bad9ca1a1c3
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Apr 15 15:55:39 2011 +0200
| | | | 
| | | |     fix the fread size checks (that where causing breakage of various i/o tests)
| | | | 
| | | | M	src/libshogun/features/StringFeatures.h
| | | |     
* | | | commit 11a53be82da30408bbd9412ba3fb4a8b7dcf1190
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| |   Date:   Fri Apr 15 14:29:46 2011 +0200
| | |   
| | |       fix a number of issues related to the split of num_vectors /
| | |       num_vectors_total / max_string_length / max_string_length_total
| | |   
| | |   M	src/libshogun/features/StringFeatures.h
| | |    
* | | commit 53e81436fd8cb819acab831ad2c500539ff751a9
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Apr 15 09:19:52 2011 +0200
| | | 
| | |     fix the data related symlinks such that examples and tests run through
| | | 
| | | M	applications/arts/data
| | | M	applications/asp/data
| | | M	applications/easysvm/data
| | | M	applications/msplicer/data
| | | M	examples/undocumented/data
| | | M	testsuite/data
| | | M	testsuite/tests
| | |      
* | |   commit b1b5dfd3c5da26f14384d38194af805fb45f5011
|\ \ \  Merge: 1506cf6 9a54d0e
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Fri Apr 15 02:11:23 2011 +0400
| | | | 
| | | |     Merge remote branch 'upstream/master'
| | | |     
| * | | commit 9a54d0e81b943f9871af7d4565e94d1c22175173
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Apr 15 00:10:40 2011 +0200
| | | | 
| | | |     fix another fread caused error
| | | | 
| | | | M	src/libshogun/features/StringFeatures.h
| | | |     
* | | | commit 1506cf68e8bd63aba9affe4cc4d38c45e7a7dc70
|/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | |   Date:   Fri Apr 15 02:07:30 2011 +0400
| | |   
| | |       Refactored whole preproc for proper overloading of get_name and
| | |       get_type
| | |   
| | |   M	src/libshogun/preproc/DecompressString.h
| | |   M	src/libshogun/preproc/KernelPCACut.cpp
| | |   M	src/libshogun/preproc/KernelPCACut.h
| | |   M	src/libshogun/preproc/LogPlusOne.cpp
| | |   M	src/libshogun/preproc/LogPlusOne.h
| | |   M	src/libshogun/preproc/NormDerivativeLem3.cpp
| | |   M	src/libshogun/preproc/NormDerivativeLem3.h
| | |   M	src/libshogun/preproc/NormOne.cpp
| | |   M	src/libshogun/preproc/NormOne.h
| | |   M	src/libshogun/preproc/PCACut.cpp
| | |   M	src/libshogun/preproc/PCACut.h
| | |   M	src/libshogun/preproc/PreProc.cpp
| | |   M	src/libshogun/preproc/PreProc.h
| | |   M	src/libshogun/preproc/PruneVarSubMean.cpp
| | |   M	src/libshogun/preproc/PruneVarSubMean.h
| | |   M	src/libshogun/preproc/RandomFourierGaussPreproc.cpp
| | |   M	src/libshogun/preproc/RandomFourierGaussPreproc.h
| | |   M	src/libshogun/preproc/SimplePreProc.h
| | |   M	src/libshogun/preproc/SortUlongString.cpp
| | |   M	src/libshogun/preproc/SortUlongString.h
| | |   M	src/libshogun/preproc/SortWordString.cpp
| | |   M	src/libshogun/preproc/SortWordString.h
| | |   M	src/libshogun/preproc/SparsePreProc.h
| | |   M	src/libshogun/preproc/StringPreProc.h
| | |    
* | | commit 76148d1c21fdcc952d474404a68c3cc5ca8f6b01
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Apr 14 22:55:32 2011 +0200
| | | 
| | |     Really fix warnings in stringfeatures.
| | | 
| | | M	src/libshogun/features/StringFeatures.h
| | |    
* | | commit cf8098f721599c283683b9ca022394abd51d8364
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Apr 14 22:55:03 2011 +0200
| | | 
| | |     add space after if
| | | 
| | | M	src/libshogun/kernel/GaussianKernel.cpp
| | |    
* | | commit 710667cc01b84ee0b80cd984f971f86d948dfd7e
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Apr 14 22:39:17 2011 +0200
| | | 
| | |     replaced ASSERT by an if-check and SG_ERROR
| | | 
| | | M	src/libshogun/features/StringFeatures.h
| | |      
* | |   commit 82d8e345ebdbd74e667f888e4b59bc60fc8d5a2e
|\ \ \  Merge: bfcc8d3 32b1b14
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Apr 14 22:18:53 2011 +0200
| | | | 
| | | |     Merge remote branch 'upstream/master'
| | | |       
| * | |   commit 32b1b14c5062f84338840ed72718a6abd7246d67
| |\ \ \  Merge: 698417c 5ac2b29
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Thu Apr 14 22:14:47 2011 +0200
| | | | | 
| | | | |     Merge branch 'master' of https://github.com/yayo3/shogun
| | | | |      
| | * | | commit 5ac2b292b73d5779eaad5bc2273187bb499895ac
| | | | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | | | Date:   Thu Apr 14 20:21:37 2011 +0200
| | | | | 
| | | | |     Mac OS gitignore update
| | | | | 
| | | | | M	.gitignore
| | | | |        
| | * | |   commit dd11b29803e5ce7608ae53589ea8e5cbd73e07c0
| | |\ \ \  Merge: 52c686a 65d3d14
| | | | | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | | | | Date:   Thu Apr 14 19:54:10 2011 +0200
| | | | | | 
| | | | | |     Merge remote-tracking branch 'upstream/master'
| | | | | |       
| | * | | | commit 52c686a54eaaf16cb92a8a6c22610d09ea10330a
| | | | | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | | | | Date:   Thu Apr 14 19:53:40 2011 +0200
| | | | | | 
| | | | | |     Fix codestyle issues.
| | | | | | 
| | | | | | M	src/libshogun/kernel/PowerKernel.h
| | | | | |       
| | * | | | commit c069b8e745adbbb915d63901eb27bc5a91c40cae
| | | |/ /  Author: Jakub Jirku <jakub.jirku@gmail.com>
| | |/| |   Date:   Wed Apr 13 23:02:28 2011 +0200
| | | | |   
| | | | |       Minor documentation and code style fixes
| | | | |   
| | | | |   M	src/libshogun/kernel/InverseMultiQuadricKernel.h
| | | | |   M	src/libshogun/kernel/MultiquadricKernel.h
| | | | |   M	src/libshogun/kernel/PowerKernel.h
| | | | |        
| * | | |   commit 698417cc8a1f3cb01d427f32f7d0b7f9739cbfae
| |\ \ \ \  Merge: f14d1d6 2da8fc1
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Thu Apr 14 21:52:36 2011 +0200
| | | | | | 
| | | | | |     Merge branch 'master' of https://github.com/karlnapf/shogun
| | | | | |         
| * | | | |   commit f14d1d662cb071550754ba188702a19395f412a0
| |\ \ \ \ \  Merge: 65d3d14 05a2219
| | |_|_|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | | |   Date:   Thu Apr 14 19:12:49 2011 +0200
| | | | | |   
| | | | | |       Merge branch 'master' of https://github.com/serialhex/shogun
| | | | | |       
| | * | | | commit 05a2219f385c5b7f1ea619b083d0fc40d190d414
| | | | | | Author: Justin Patera <serialhex@gmail.com>
| | | | | | Date:   Thu Apr 14 13:12:21 2011 -0400
| | | | | | 
| | | | | |     Small edit in comments
| | | | | | 
| | | | | | M	src/libshogun/lib/Mathematics.h
| | | | | |       
| | * | | | commit c884b9055e649c2316c833205643667446576844
| | | | | | Author: Justin Patera <serialhex@gmail.com>
| | | | | | Date:   Thu Apr 14 13:00:58 2011 -0400
| | | | | | 
| | | | | |     Changed "variance" to "std_dev" as it actually uses the standard deviation to shift the normal distribution, not variance.
| | | | | | 
| | | | | | M	src/libshogun/lib/Mathematics.h
| | | | | |       
* | | | | | commit bfcc8d35411ff752b0d39067a261a1d9cfa49623
| |_|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| | | |   Date:   Thu Apr 14 22:17:47 2011 +0200
| | | | |   
| | | | |       removed a bunch of warnings caused by an ignored return type by introducing asserts for the result of fread() calls.
| | | | |   
| | | | |   M	src/libshogun/features/StringFeatures.h
| | | | |      
* | | | | commit 2da8fc162a8344998cc0495c5dcbe329bc90f9b0
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Apr 14 21:13:20 2011 +0200
| | | | | 
| | | | |     remove unnecessary NULL check
| | | | | 
| | | | | M	src/libshogun/features/Features.cpp
| | | | |      
* | | | | commit a334ac8d0caff116b5f449f3d5c8653109831d23
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Apr 14 21:13:00 2011 +0200
| | | | | 
| | | | |     corrected signature for setter functions
| | | | | 
| | | | | M	src/libshogun/features/Features.cpp
| | | | |      
* | | | | commit 57b2e4fca3231f1a9b1a80a855a78b557cd2e134
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Apr 14 21:11:28 2011 +0200
| | | | | 
| | | | |     corrected line for setter of subset indices of CStringFeatures
| | | | | 
| | | | | M	src/modular/Features.i
| | | | |        
* | | | |   commit 06a9d3ee312ef6116ba401edb7f97adeb7b0babc
|\ \ \ \ \  Merge: 9663e8f 65d3d14
| |/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | |   Date:   Thu Apr 14 21:06:32 2011 +0200
| | | | |   
| | | | |       Merge remote branch 'upstream/master'
| | | | |      
| * | | | commit 65d3d14fca25c3a0665e8f7c0fe20f674b203212
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Thu Apr 14 18:53:25 2011 +0200
| | | |   
| | | |       whitespace fix
| | | |   
| | | |   M	src/libshogun/classifier/Perceptron.cpp
| | | |       
| * | |   commit d1be826692fb853797158a4029d2077f959d7989
| |\ \ \  Merge: 67272f1 b9c1800
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Thu Apr 14 18:48:47 2011 +0200
| | | | | 
| | | | |     Merge branch 'master' of https://github.com/kisa12012/shogun
| | | | |        
| | * | |   commit b9c1800484293eaaae5ddebc4abfeabf7e0063d1
| | |\ \ \  Merge: 339835f 166a5bc
| | | | | | Author: Hidekazu Oiwa <hidekazu.oiwa@gmail.com>
| | | | | | Date:   Fri Apr 15 01:12:17 2011 +0900
| | | | | | 
| | | | | |     Merge remote branch 'upstream/master'
| | | | | |       
| | * | | | commit 339835f9193b83a53a4d84746e26833ea496d677
| | | | | | Author: Hidekazu Oiwa <hidekazu.oiwa@gmail.com>
| | | | | | Date:   Fri Apr 15 01:06:08 2011 +0900
| | | | | | 
| | | | | |     fix Perceptron algorithm
| | | | | | 
| | | | | | M	src/libshogun/classifier/Perceptron.cpp
| | | | | |       
| * | | | | commit 67272f11c82eafa6e1b1cc9c4a36b1a1a1256340
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Thu Apr 14 18:40:09 2011 +0200
| | | | | | 
| | | | | |     fix typo - it is KPCA*CUT*
| | | | | | 
| | | | | | M	src/libshogun/preproc/KernelPCACut.cpp
| | | | | |       
| * | | | | commit 5eebbace4b8f5c26172795ad765a5eec6652b85d
| | |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | |   Date:   Thu Apr 14 18:39:22 2011 +0200
| | | | |   
| | | | |       Fix configure to disable any kind of optimization
| | | | |       
| | | | |       ...when --disable-optimization is selected.
| | | | |   
| | | | |   M	src/configure
| | | | |        
* | | | |   commit 9663e8fd97c8ee4fe24c322db7d21950c2b9a132
|\ \ \ \ \  Merge: 484f219 166a5bc
| |/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | |   Date:   Thu Apr 14 16:18:57 2011 +0200
| | | | |   
| | | | |       Merge remote branch 'upstream/master'
| | | | |        
| * | | |   commit 166a5bc2bbd465e70f4168d5276c8896e0299ed1
| |\ \ \ \  Merge: a9d9eaf 601b8ab
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Thu Apr 14 15:21:02 2011 +0200
| | | | | | 
| | | | | |     Merge branch 'master' of https://github.com/karlnapf/shogun
| | | | | |       
| * | | | | commit a9d9eaf71d1e7be2dceba5ba2f051dbd50477059
| | |_|/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |/| | |   Date:   Thu Apr 14 16:11:23 2011 +0400
| | | | |   
| | | | |       Refactored preproc package for using EPreProcType enum
| | | | |   
| | | | |   M	src/libshogun/preproc/DecompressString.h
| | | | |   M	src/libshogun/preproc/KernelPCACut.cpp
| | | | |   M	src/libshogun/preproc/LogPlusOne.cpp
| | | | |   M	src/libshogun/preproc/NormDerivativeLem3.cpp
| | | | |   M	src/libshogun/preproc/NormOne.cpp
| | | | |   M	src/libshogun/preproc/PCACut.cpp
| | | | |   M	src/libshogun/preproc/PreProc.cpp
| | | | |   M	src/libshogun/preproc/PreProc.h
| | | | |   M	src/libshogun/preproc/PruneVarSubMean.cpp
| | | | |   M	src/libshogun/preproc/RandomFourierGaussPreproc.cpp
| | | | |   M	src/libshogun/preproc/SimplePreProc.h
| | | | |   M	src/libshogun/preproc/SortUlongString.cpp
| | | | |   M	src/libshogun/preproc/SortWordString.cpp
| | | | |   M	src/libshogun/preproc/SparsePreProc.h
| | | | |   M	src/libshogun/preproc/StringPreProc.h
| | | | |      
* | | | | commit 484f21965581e5bf4b27f44c6cf4a241da653783
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Apr 14 16:18:21 2011 +0200
| | | | | 
| | | | |     comment copy paste error corrected
| | | | | 
| | | | | M	src/libshogun/features/StringFeatures.h
| | | | |      
* | | | | commit e6917d4e9aa0ce45eddb02f48d6f011e776cbe12
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Apr 14 16:18:04 2011 +0200
| | | | | 
| | | | |     added setter for subset indices for swig
| | | | | 
| | | | | M	src/libshogun/features/Features.cpp
| | | | | M	src/libshogun/features/Features.h
| | | | |      
* | | | | commit f4a38d4f66a298e700ce765ae334e03c8586848c
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Apr 14 16:16:53 2011 +0200
| | | | | 
| | | | |     added lines for CFeatures's getter and setter of subset indices
| | | | | 
| | | | | M	src/modular/Features.i
| | | | |      
* | | | | commit 5c1c73860518b1d304fd5b62581e73262141ef1d
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| | |   Date:   Thu Apr 14 15:58:06 2011 +0200
| | | |   
| | | |       made setter for subset and index conversion virtual
| | | |   
| | | |   M	src/libshogun/features/Features.h
| | | |   M	src/libshogun/features/StringFeatures.h
| | | |     
* | | | commit 601b8ab8142906acb06462f0496b0c5a1af49311
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Apr 14 15:04:35 2011 +0200
| | | | 
| | | |     max_string_length adjustments with respect to subsets
| | | |     copy_features() now works woth subsets
| | | |     code cleanups
| | | | 
| | | | M	src/libshogun/features/StringFeatures.h
| | | |     
* | | | commit 0bd912d965e8020c69c9a9ec3dcbf7abae37065c
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Apr 14 15:04:16 2011 +0200
| | | | 
| | | |     added getter for subset matrix that is swig compatible
| | | |     small changed to std getter
| | | |     method subset_idx_conversion() is now not pure virtual anymore
| | | |     added comments
| | | | 
| | | | M	src/libshogun/features/Features.cpp
| | | | M	src/libshogun/features/Features.h
| | | |     
* | | | commit 1a5cadc431105a5248ebf1cdca45ae6583b4f5ac
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Apr 14 13:34:05 2011 +0200
| | | | 
| | | |     coding style fix
| | | | 
| | | | M	src/libshogun/features/Features.h
| | | |     
* | | | commit ea6b156ba78596ce0e8642010b50f57dbffeb192
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Apr 14 13:27:24 2011 +0200
| | | | 
| | | |     corrections of copy/paste error that caused compile error for python_modular
| | | |     
| | | |     appending from another string features instances now only appends a subset, if one is defined
| | | | 
| | | | M	src/libshogun/features/StringFeatures.h
| | | |     
* | | | commit 87d0bbac97f345d0dde33e3cf9b7d32bd8c51a83
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Apr 14 12:54:29 2011 +0200
| | | | 
| | | |     applied all discussed changes
| | | |     -some changes to names
| | | |     -some errors
| | | |     -some design changes
| | | | 
| | | | M	src/libshogun/features/Features.cpp
| | | | M	src/libshogun/features/Features.h
| | | | M	src/libshogun/features/StringFeatures.h
| | | |       
* | | |   commit 9d840cd31dc5c01b031e0213eeacd16dc16a3212
|\ \ \ \  Merge: 4c0b38f f6f47f3
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Thu Apr 14 10:59:06 2011 +0200
| | | |   
| | | |       Merge remote branch 'upstream/master'
| | | |     
| * | | commit f6f47f306614d0b48ce3614ee7058f3ab31fa968
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Apr 13 22:04:20 2011 +0200
| | | | 
| | | |     Get histogram to reliably work in SNPFeatures
| | | | 
| | | | M	src/libshogun/features/SNPFeatures.cpp
| | | |     
* | | | commit 4c0b38f7f609133e97328b3a39cd6b4e4c3aa899
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Wed Apr 13 18:17:09 2011 +0200
| | |   
| | |       implemented subset access for CFeatures and CStringFeatures
| | |   
| | |   M	src/libshogun/features/Features.cpp
| | |   M	src/libshogun/features/Features.h
| | |   M	src/libshogun/features/StringFeatures.h
| | |    
* | | commit 87257067bbb18d063322bce70c3db3a947f2be61
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Apr 13 14:25:40 2011 +0200
| | | 
| | |     Draft a histogram function.
| | | 
| | | M	src/libshogun/features/SNPFeatures.cpp
| | | M	src/libshogun/features/SNPFeatures.h
| | |    
* | | commit 1371376242f09ce9907c464dc9f913fa0cb1637e
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Apr 13 14:24:50 2011 +0200
| | | 
| | |     rename width to m_width too
| | | 
| | | M	src/libshogun/kernel/ExponentialKernel.cpp
| | | M	src/libshogun/kernel/ExponentialKernel.h
| | |    
* | | commit cce0b5ddb7615dd1c2b6ea3fcc0815873331583a
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Apr 13 13:31:50 2011 +0400
| | | 
| | |     Added python_modular examples for kernels introduced earlier
| | | 
| | | A	examples/undocumented/python_modular/kernel_cauchy_modular.py
| | | A	examples/undocumented/python_modular/kernel_circular_modular.py
| | | A	examples/undocumented/python_modular/kernel_distantsegments_modular.py
| | | A	examples/undocumented/python_modular/kernel_exponential_modular.py
| | | A	examples/undocumented/python_modular/kernel_inversemultiquadric_modular.py
| | | A	examples/undocumented/python_modular/kernel_log_modular.py
| | | A	examples/undocumented/python_modular/kernel_multiquadric_modular.py
| | | A	examples/undocumented/python_modular/kernel_power_modular.py
| | | A	examples/undocumented/python_modular/kernel_rationalquadratic_modular.py
| | | A	examples/undocumented/python_modular/kernel_spherical_modular.py
| | | A	examples/undocumented/python_modular/kernel_spline_modular.py
| | | A	examples/undocumented/python_modular/kernel_tstudent_modular.py
| | | A	examples/undocumented/python_modular/kernel_wave_modular.py
| | | A	examples/undocumented/python_modular/kernel_wavelet_modular.py
| | |    
* | | commit e805a2cb8ec7cf8acc1b792a5503c6a9945871a5
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Apr 13 13:24:15 2011 +0400
| | | 
| | |     Integrated some kernels to Kernel.i
| | | 
| | | M	src/modular/Kernel.i
| | |    
* | | commit 42ec6c9d81d170d3060da38723af66dadba7473b
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Apr 13 13:23:25 2011 +0400
| | | 
| | |     Fixed ExponentialKernel
| | | 
| | | M	src/libshogun/kernel/ExponentialKernel.cpp
| | | M	src/libshogun/kernel/ExponentialKernel.h
| | |    
* | | commit 388d63457ae6263fea13db7dee46e13428ef7e2a
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Apr 13 09:02:38 2011 +0200
| | | 
| | |     minor code reshuffling and verious coding style fixes in the recently added kernels
| | | 
| | | M	src/libshogun/kernel/CircularKernel.cpp
| | | M	src/libshogun/kernel/CircularKernel.h
| | | M	src/libshogun/kernel/DistantSegmentsKernel.cpp
| | | M	src/libshogun/kernel/DistantSegmentsKernel.h
| | | M	src/libshogun/kernel/ExponentialKernel.cpp
| | | M	src/libshogun/kernel/InverseMultiQuadricKernel.h
| | | M	src/libshogun/kernel/MultiquadricKernel.h
| | | M	src/libshogun/kernel/PowerKernel.h
| | | M	src/libshogun/kernel/RationalQuadraticKernel.cpp
| | | M	src/libshogun/kernel/RationalQuadraticKernel.h
| | | M	src/libshogun/kernel/SphericalKernel.cpp
| | | M	src/libshogun/kernel/TStudentKernel.cpp
| | | M	src/libshogun/kernel/WaveKernel.cpp
| | | M	src/libshogun/kernel/WaveKernel.h
| | | M	src/libshogun/kernel/WaveletKernel.cpp
| | | M	src/libshogun/kernel/WaveletKernel.h
| | | M	src/libshogun/kernel/WeightedDegreeStringKernel.h
| | |    
* | | commit b0e729e67ad9f0e9d5724a6ccaca99ab45020897
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Apr 13 09:01:04 2011 +0200
| | | 
| | |     Fix duplicate case entry for MultiQuadric Kernel
| | | 
| | | M	src/libshogun/kernel/Kernel.cpp
| | |    
* | | commit c010bae29396a61914bf620a9b3a68efb219dbcc
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Apr 13 08:36:04 2011 +0200
| | | 
| | |     Introduce Multiquadric kernel. Thanks Joanna Stocka for the patch.
| | | 
| | | M	src/libshogun/kernel/Kernel.cpp
| | | A	src/libshogun/kernel/MultiquadricKernel.cpp
| | | A	src/libshogun/kernel/MultiquadricKernel.h
| | | M	src/modular/Kernel.i
| | |    
* | | commit 6e53c49c24fdf51e440816c486e73d908a88ca3c
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Wed Apr 13 08:34:20 2011 +0200
| |   
| |       don't assert anything when registering parameters
| |   
| |   M	src/libshogun/kernel/InverseMultiQuadricKernel.cpp
| |     
* |   commit 8b483bf29620e3166d5c9b79df6c61133e19831d
|\ \  Merge: 1e6858d 36bbddd
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Apr 12 19:27:22 2011 +0200
| | | 
| | |     Merge branch 'master' of https://github.com/yayo3/shogun
| | |    
| * | commit 36bbddd080672684c1944c9175dcbeff28ee5045
| | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | Date:   Tue Apr 12 17:52:48 2011 +0200
| | | 
| | |     Documentation formula fix
| | | 
| | | M	src/libshogun/kernel/LogKernel.h
| | | M	src/libshogun/kernel/PowerKernel.h
| | |      
* | |   commit 1e6858d255ef2044c8f5d6240c95d3fe915730c1
|\ \ \  Merge: 238e9ca 132aa7c
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Tue Apr 12 15:56:59 2011 +0200
| | |   
| | |       Merge branch 'master' of https://github.com/yayo3/shogun
| | |    
| * | commit 132aa7c31ca0d8cd8dc422a24da8b552916b126e
| | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | Date:   Tue Apr 12 15:47:08 2011 +0200
| | | 
| | |     configure optimization option
| | | 
| | | M	src/configure
| | |    
| * | commit fc966b26327725ce1557e6c7bf3db96e79c54704
| | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | Date:   Tue Apr 12 15:16:04 2011 +0200
| | | 
| | |     Darwin configure cleanup fix
| | | 
| | | M	src/configure
| | |    
| * | commit 4c044bf331d0106222cb75f364d8c68aaa48b87d
| | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | Date:   Tue Apr 12 14:52:37 2011 +0200
| | | 
| | |     configure debug fix
| | | 
| | | M	src/configure
| | |    
| * | commit 7401fb4ba04062e221129734f219426e8e4fa020
| | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | Date:   Tue Apr 12 14:38:12 2011 +0200
| | | 
| | |     Darwin Makefile fix
| | | 
| | | M	src/Makefile
| | |      
| * |   commit 36bce0d73b039ce32d2f42009f4f47feac7ddd16
| |\ \  Merge: 7bb3e5e 248812b
| | | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | | Date:   Tue Apr 12 14:05:19 2011 +0200
| | | | 
| | | |     Merge remote-tracking branch 'upstream/master'
| | | |     
| * | | commit 7bb3e5e051e2b54c009347d24e59322d7d3f2ae5
| | | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | | Date:   Tue Apr 12 10:56:41 2011 +0200
| | | | 
| | | |     Kernel name fixes
| | | | 
| | | | M	src/libshogun/kernel/LogKernel.h
| | | | M	src/libshogun/kernel/PowerKernel.h
| | | |     
| * | | commit c1c898fa36ba4e99fef43a462285a542764aadaa
| | | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | | Date:   Tue Apr 12 10:48:25 2011 +0200
| | | | 
| | | |     Makefile, configure and build env improvements
| | | | 
| | | | M	.gitignore
| | | | M	src/Makefile
| | | | M	src/configure
| | | |     
* | | | commit 238e9cad7688e81549a44b60440789d04237245c
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| |   Date:   Tue Apr 12 14:24:41 2011 +0200
| | |   
| | |       fix include path to be relative to libshogun/
| | |   
| | |   M	src/libshogun/classifier/GaussianNaiveBayes.h
| | |    
* | | commit 248812b64bb463ea1ef1718074cd269ba2132b0e
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Tue Apr 12 14:04:24 2011 +0200
| |   
| |       fix minor compile error - hurray copy & paste
| |   
| |   M	src/libshogun/lib/Mathematics.h
| |     
* |   commit bda6e6eb456f6f660c6997537b133077ccfd85ab
|\ \  Merge: e5fa152 b677245
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Apr 12 09:44:03 2011 +0200
| | | 
| | |     Merge branch 'master' of https://github.com/serialhex/shogun
| | |    
| * | commit b6772453e724781b9d0745544f151ef23885967d
| | | Author: Justin Patera <serialhex@gmail.com>
| | | Date:   Tue Apr 12 03:39:48 2011 -0400
| | | 
| | |     Made convenience functions randn_float & randn_double for standard normal random variables.  Also edited comment on abs() function to reflect what it truly does.
| | | 
| | | M	src/libshogun/lib/Mathematics.h
| | |    
| * | commit 19c35fd0f15e59588930944fcaf8e2f025c6c8ea
| | | Author: Justin Patera <serialhex@gmail.com>
| | | Date:   Tue Apr 12 03:19:03 2011 -0400
| | | 
| | |     Killing the default arguments on normal_random.
| | | 
| | | M	src/libshogun/lib/Mathematics.h
| | |    
| * | commit 74c94a502362c34ad3d406b537351d3fb158d30f
| | | Author: Justin Patera <serialhex@gmail.com>
| | | Date:   Tue Apr 12 02:33:40 2011 -0400
| | | 
| | |     Changed mornal_random so that only the float32_t version has default arguments.
| | |     Unfortunately having float32_t foo(float32_t=1.0) && float64_t foo(float64_t=1.0) is ambiguous in SWIG, as it does not follow the typedefs or namespace qualifiers.  See "6.15.3 Ambiguity resolution and renaming" and the "Notes on %rename and %ignore" in the SWIG documentation for more information.
| | | 
| | | M	src/libshogun/lib/Mathematics.h
| | |    
| * | commit 60218e1cd72de01b87545835784a754f2f592d08
| | | Author: Justin Patera <serialhex@gmail.com>
| | | Date:   Mon Apr 11 06:15:05 2011 -0400
| | | 
| | |     The float64_t version has been commented out because mod python was not compiling correctly with it turned on... a fight for another day as i've been wresteling with graphs all night long and in ~3 hours i will have been up for 24 hours, YAY! 6:15am and sleeptime!!
| | | 
| | | M	src/libshogun/lib/Mathematics.h
| | |    
| * | commit cc6bf94698f9f8a277537f3d545806c818bacd6c
| | | Author: Justin Patera <serialhex@gmail.com>
| | | Date:   Sun Apr 10 18:51:08 2011 -0400
| | | 
| | |     Initial commit for Normal Random Number generator.
| | | 
| | | M	src/libshogun/lib/Mathematics.h
| | |    
* | | commit e5fa1521a50313ad9949411f901c5aff69f4c943
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue Apr 12 01:20:32 2011 +0400
| | | 
| | |     Renamed GNB to GaussianNaiveBayes
| | | 
| | | A	examples/undocumented/python_modular/classifier_gaussiannaivebayes_modular.py
| | | D	examples/undocumented/python_modular/classifier_gnb_modular.py
| | | M	src/libshogun/classifier/Classifier.h
| | | D	src/libshogun/classifier/GNB.cpp
| | | D	src/libshogun/classifier/GNB.h
| | | A	src/libshogun/classifier/GaussianNaiveBayes.cpp
| | | A	src/libshogun/classifier/GaussianNaiveBayes.h
| | | M	src/modular/Classifier.i
| | |    
* | | commit 979e3032f4570ff03e30f7e7cef96dfda09c2f6c
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
|/|   Date:   Mon Apr 11 22:53:42 2011 +0200
| |   
| |       fix make doc / make install targets for csharp,lua,...
| |   
| |   M	src/Makefile.template
| |     
* |   commit abe1f108c3bd28e58fd41b07ac23f0f790e6aad4
|\ \  Merge: dd3033b 03db6ec
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Apr 11 21:51:15 2011 +0200
| | | 
| | |     Merge branch 'master' of https://github.com/SergeyLisitsyn/shogun
| | |    
| * | commit 03db6ecede68ecbd31d9076ba118f9db0e803338
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Apr 11 22:50:25 2011 +0400
| | | 
| | |     Added type checking and corrected some mistype in description
| | | 
| | | M	src/libshogun/classifier/GNB.cpp
| | | M	src/libshogun/classifier/GNB.h
| | |      
* | |   commit dd3033bfc3644b682e9714043c581f62267e5a5d
|\ \ \  Merge: 34b078e 520f75c
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Apr 11 21:42:11 2011 +0200
| | | | 
| | | |     Merge branch 'master' of https://github.com/vzxzcz/shogun into klaus
| | | |       
| * | |   commit 520f75c62ed534d1998bc2787153ecff957f7a1d
| |\ \ \  Merge: 47bc5b4 7ba79c1
| | |/ /  Author: Rafał Surowiecki <rafal@surowiecki.pl>
| | | |   Date:   Mon Apr 11 18:41:13 2011 +0200
| | | |   
| | | |       Merge
| | | |     
| * | | commit 47bc5b4b4a92ee086de115e9b59dc113a2050a98
| | | | Author: Rafał Surowiecki <rafal@surowiecki.pl>
| | | | Date:   Mon Apr 11 18:27:29 2011 +0200
| | | | 
| | | |     SparsePolyFeatures and RationalQuadraticKernel post-review fixes
| | | | 
| | | | M	src/libshogun/features/SparsePolyFeatures.cpp
| | | | M	src/libshogun/features/SparsePolyFeatures.h
| | | | M	src/libshogun/kernel/RationalQuadraticKernel.h
| | | |     
| * | | commit ca983ebc6ff3978fe2fbdc423447f87b9b1c9107
| | | | Author: Rafał Surowiecki <rafal@surowiecki.pl>
| | | | Date:   Mon Apr 11 17:02:01 2011 +0200
| | | | 
| | | |     +Rational Quadric Kernel
| | | |     
| | | |     +Sparse Poly Features serialization
| | | | 
| | | | M	src/libshogun/features/SparsePolyFeatures.cpp
| | | | M	src/libshogun/features/SparsePolyFeatures.h
| | | | A	src/libshogun/kernel/RationalQuadraticKernel.cpp
| | | | A	src/libshogun/kernel/RationalQuadraticKernel.h
| | | | M	src/modular/Kernel.i
| | | |     
* | | | commit 34b078eaf9f1abb749329b1d8da3439edf0f9957
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Apr 11 20:27:30 2011 +0200
| | | | 
| | | |     renamed member variable compact to m_compact. fixes a compile error
| | | | 
| | | | M	src/libshogun/kernel/GaussianKernel.h
| | | |     
* | | | commit 7f0b001a90e5be3d7e017b344611b81483470a7b
| |/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| |   Date:   Mon Apr 11 19:21:42 2011 +0200
| | |   
| | |       Added implementation of the 'Distant Segments'-string-kernel
| | |   
| | |   A	src/libshogun/kernel/DistantSegmentsKernel.cpp
| | |   A	src/libshogun/kernel/DistantSegmentsKernel.h
| | |   M	src/libshogun/kernel/Kernel.h
| | |    
* | | commit 7ba79c15c9187b232c450f29ddd8662e18834f55
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Apr 11 17:48:52 2011 +0200
| | | 
| | |     ignore generated *.cs in c# interface
| | | 
| | | M	.gitignore
| | |    
* | | commit 3bb5ffe33a28045907e919dcc95a1e30a1d0296c
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Apr 11 17:47:45 2011 +0200
| | | 
| | |     minor coding style changes in gaussiankernel
| | | 
| | | M	src/libshogun/kernel/GaussianKernel.cpp
| | | M	src/libshogun/kernel/GaussianKernel.h
| | |      
* | |   commit fcc745583ae2e55ed1015f93ba2d6f4915d95305
|\ \ \  Merge: 4f69e19 1237540
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Apr 11 17:03:47 2011 +0200
| | | | 
| | | |     Merge branch 'master' of https://github.com/ahmaurya/shogun
| | | |     
| * | | commit 123754097604212eed13d24b1a0da5c5aa35a286
| | | | Author: Abhinav Maurya <ahmaurya@gmail.com>
| | | | Date:   Mon Apr 11 15:29:28 2011 +0530
| | | | 
| | | |     Removed a bug and some whitespace issues
| | | | 
| | | | M	src/libshogun/kernel/CircularKernel.cpp
| | | | M	src/libshogun/kernel/GaussianKernel.cpp
| | | |     
| * | | commit 193c3d7f16a2dde4ad2455d5f1db07e317617cf6
| | | | Author: Abhinav Maurya <ahmaurya@gmail.com>
| | | | Date:   Mon Apr 11 15:21:25 2011 +0530
| | | | 
| | | |     Documentation of Circular Kernel and Compact Gaussian Kernel
| | | | 
| | | | M	src/libshogun/kernel/CircularKernel.h
| | | | M	src/libshogun/kernel/GaussianKernel.h
| | | |       
| * | |   commit dd074c5fa910cfba9f5101aca9718e8a40fd04b0
| |\ \ \  Merge: 307bfbc 412d643
| | | | | Author: Abhinav Maurya <ahmaurya@gmail.com>
| | | | | Date:   Mon Apr 11 14:31:33 2011 +0530
| | | | | 
| | | | |     Merge remote branch 'shogun/master'
| | | | |     
| | | | |     Conflicts:
| | | | |     	src/libshogun/kernel/Kernel.cpp
| | | | |     	src/libshogun/kernel/Kernel.h
| | | | |     	src/modular/Kernel.i
| | | | |      
| * | | | commit 307bfbcc59eabc7e8fe369904e16c95e6bab627c
| | | | | Author: Abhinav Maurya <ahmaurya@gmail.com>
| | | | | Date:   Mon Apr 11 11:19:02 2011 +0530
| | | | | 
| | | | |     Addition of Circular Kernel
| | | | | 
| | | | | A	src/libshogun/kernel/CircularKernel.cpp
| | | | | A	src/libshogun/kernel/CircularKernel.h
| | | | | M	src/libshogun/kernel/GaussianKernel.cpp
| | | | | M	src/libshogun/kernel/GaussianKernel.h
| | | | | M	src/libshogun/kernel/InverseMultiQuadricKernel.cpp
| | | | | M	src/libshogun/kernel/InverseMultiQuadricKernel.h
| | | | | M	src/libshogun/kernel/Kernel.cpp
| | | | | M	src/libshogun/kernel/Kernel.h
| | | | | M	src/modular/Kernel.i
| | | | |      
| * | | | commit cef67910ee4a2225952e645991957546d8fcddf0
| | | | | Author: Abhinav Maurya <ahmaurya@gmail.com>
| | | | | Date:   Mon Apr 11 09:27:20 2011 +0530
| | | | | 
| | | | |     Addition of compact option to GaussianKernel, Addition of InverseMultiQuadricKernel, Deletion of GaussianCompactKernel
| | | | | 
| | | | | D	src/libshogun/kernel/GaussianCompactKernel.cpp
| | | | | D	src/libshogun/kernel/GaussianCompactKernel.h
| | | | | M	src/libshogun/kernel/GaussianKernel.cpp
| | | | | M	src/libshogun/kernel/GaussianKernel.h
| | | | | A	src/libshogun/kernel/InverseMultiQuadricKernel.cpp
| | | | | A	src/libshogun/kernel/InverseMultiQuadricKernel.h
| | | | | M	src/libshogun/kernel/Kernel.cpp
| | | | | M	src/libshogun/kernel/Kernel.h
| | | | | M	src/modular/Kernel.i
| | | | |      
| * | | | commit 73455c5c549415c0b252a8e99d90640e130e7660
| | | | | Author: Abhinav Maurya <ahmaurya@gmail.com>
| | | | | Date:   Sun Apr 10 21:03:15 2011 +0530
| | | | | 
| | | | |     Changing necessary Kernel.* files
| | | | | 
| | | | | M	src/libshogun/kernel/Kernel.cpp
| | | | | M	src/libshogun/kernel/Kernel.h
| | | | | M	src/modular/Kernel.i
| | | | |      
| * | | | commit 211d32b9a99d04298ec1c7c7ec9bfa1071ec2b49
| | | | | Author: Abhinav Maurya <ahmaurya@gmail.com>
| | | | | Date:   Sun Apr 10 21:02:22 2011 +0530
| | | | | 
| | | | |     Addition of GaussianCompactKernel
| | | | | 
| | | | | A	src/libshogun/kernel/GaussianCompactKernel.cpp
| | | | | A	src/libshogun/kernel/GaussianCompactKernel.h
| | | | |      
* | | | | commit 4f69e1923f0a37484cbdaad5735ffed772a22c16
| | | | | Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| | | | | Date:   Mon Apr 11 16:51:19 2011 +0200
| | | | | 
| | | | |     fixed typos in README
| | | | | 
| | | | | M	README
| | | | |        
* | | | |   commit 4dd2b609fd1aba55e7d31a1318ac6a7d7f302c14
|\ \ \ \ \  Merge: 6a817ec f178f78
| |_|_|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | |   Date:   Mon Apr 11 16:45:25 2011 +0200
| | | | |   
| | | | |       Merge branch 'master' of https://github.com/Bautista/shogun
| | | | |      
| * | | | commit f178f78446e9b8a446befb8ad6debbb2e61d915f
| | | | | Author: M.A. Bautista <miguelangelbautistamartin@gmail.com>
| | | | | Date:   Mon Apr 11 13:30:18 2011 +0200
| | | | | 
| | | | |     Final
| | | | | 
| | | | | M	src/libshogun/distance/AttenuatedEuclidianDistance.h
| | | | |      
| * | | | commit 82232e3988233c31827f1bb5bb7556fe00f21bf8
| | | | | Author: M.A. Bautista <you@example.com>
| | | | | Date:   Mon Apr 11 13:25:03 2011 +0200
| | | | | 
| | | | |     Final fix
| | | | | 
| | | | | M	src/libshogun/distance/AttenuatedEuclidianDistance.h
| | | | |      
| * | | | commit 16f73f3311fc89df05e1da471906362882b669c3
| | | | | Author: M.A. Bautista <you@example.com>
| | | | | Date:   Mon Apr 11 13:22:08 2011 +0200
| | | | | 
| | | | |     Fix documentation
| | | | | 
| | | | | M	src/libshogun/distance/AttenuatedEuclidianDistance.h
| | | | |      
| * | | | commit d696914768c0711471d6fccb968f9c3e6dc6590f
| | | | | Author: M.A. Bautista <bautista@ubuntu.(none)>
| | | | | Date:   Mon Apr 11 13:18:36 2011 +0200
| | | | | 
| | | | |     Documentation improvement
| | | | | 
| | | | | M	src/libshogun/distance/AttenuatedEuclidianDistance.h
| | | | |      
| * | | | commit ec2283bc41f43eb35ed3cf6a42426112cbdabefa
| | | | | Author: Miguel Angel Bautista <bautista@ubuntu.(none)>
| | | | | Date:   Sun Apr 10 22:45:00 2011 +0200
| | | | | 
| | | | |     Distance Id
| | | | |      Please enter the commit message for your changes. Lines starting
| | | | | 
| | | | | M	src/libshogun/distance/Distance.h
| | | | |      
| * | | | commit b781ce9ec421c437321cee82c0123b6e52dfab3a
| | | | | Author: Miguel Angel Bautista <bautista@ubuntu.(none)>
| | | | | Date:   Sun Apr 10 22:36:00 2011 +0200
| | | | | 
| | | | |     Copyright issues.
| | | | | 
| | | | | M	src/libshogun/distance/AttenuatedEuclidianDistance.cpp
| | | | |      
| * | | | commit 7c17248f3c51a8c1cbf2f1f0b80c087e77c79328
| | | | | Author: Miguel Angel Bautista <bautista@ubuntu.(none)>
| | | | | Date:   Sun Apr 10 22:28:59 2011 +0200
| | | | | 
| | | | |     Copyright issues.
| | | | | 
| | | | | M	src/libshogun/distance/AttenuatedEuclidianDistance.h
| | | | |      
| * | | | commit dbd011485b52a7c264d74f0eb6795f135c4bb4eb
| |/ / /  Author: Miguel Angel Bautista <bautista@ubuntu.(none)>
| | | |   Date:   Sun Apr 10 21:24:27 2011 +0200
| | | |   
| | | |       Attenuated Euclidean Distance for ECOC decoding patch.
| | | |   
| | | |   A	src/libshogun/distance/AttenuatedEuclidianDistance.cpp
| | | |   A	src/libshogun/distance/AttenuatedEuclidianDistance.h
| | | |   M	src/libshogun/distance/Distance.h
| | | |       
* | | |   commit 6a817ece47cd590687c82193020dffd408dbb6b7
|\ \ \ \  Merge: 85fa746 1733127
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Apr 11 16:17:12 2011 +0200
| | | | | 
| | | | |     Merge branch 'master' of https://github.com/SergeyLisitsyn/shogun
| | | | |      
| * | | | commit 17331277b006f1e81d5dd05aeb3701fc1a1c9e96
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 11 17:24:14 2011 +0400
| | | | | 
| | | | |     Some safety changes
| | | | | 
| | | | | M	src/libshogun/classifier/GNB.cpp
| | | | | M	src/libshogun/classifier/GNB.h
| | | | |      
| * | | | commit e524ebc2dce46f2b3d686ed3483bda0b1b4d00b6
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 11 17:08:12 2011 +0400
| | | | | 
| | | | |     Fixed some naming and computing issues
| | | | | 
| | | | | M	src/libshogun/classifier/GNB.cpp
| | | | | M	src/libshogun/classifier/GNB.h
| | | | |      
| * | | | commit 10f5c50e5e9f31a7212e03680e8151ae7067a297
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 11 16:26:50 2011 +0400
| | | | | 
| | | | |     Added some comments
| | | | | 
| | | | | M	src/libshogun/classifier/GNB.cpp
| | | | |      
| * | | | commit 3f064daf842944a09f0c08f51336dc3a9bd1826c
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 11 16:15:23 2011 +0400
| | | | | 
| | | | |     Removed SG_PRINT() from classify method
| | | | | 
| | | | | M	src/libshogun/classifier/GNB.cpp
| | | | |      
| * | | | commit 8c1c22bcfdca3f86ff0eb93ea0150e7350ab618a
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 11 16:10:27 2011 +0400
| | | | | 
| | | | |     Added test for GNB classifier
| | | | | 
| | | | | A	examples/undocumented/python_modular/classifier_gnb_modular.py
| | | | |        
| * | | |   commit 24b8804ab8a614e79581efc4288465060be132ea
| |\ \ \ \  Merge: 81b2be8 1c6226d
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Mon Apr 11 15:43:54 2011 +0400
| | | | | | 
| | | | | |     Merge remote branch 'origin/master'
| | | | | |       
| | * | | | commit 1c6226d9a998cb1824b101a15b99f516d421abe2
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Mon Apr 11 15:30:43 2011 +0400
| | | | | | 
| | | | | |     Clean-up and some safety issues
| | | | | | 
| | | | | | M	src/libshogun/classifier/GNB.cpp
| | | | | | M	src/libshogun/classifier/GNB.h
| | | | | |         
| | * | | |   commit f010b5e83014eb9c76701d7dfc37a460630af2e4
| | |\ \ \ \  Merge: 8d51feb f981d87
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Mon Apr 11 15:00:57 2011 +0400
| | | | | | | 
| | | | | | |     Merge remote branch 'upstream/master'
| | | | | | |        
| | * | | | | commit 8d51feb0735de1bd5ab34b7745fbb5fde85e45e2
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Mon Apr 11 15:00:22 2011 +0400
| | | | | | | 
| | | | | | |     Almost-done CGNB classifier
| | | | | | | 
| | | | | | | M	src/libshogun/classifier/GNB.cpp
| | | | | | | M	src/libshogun/classifier/GNB.h
| | | | | | |        
| | * | | | | commit 68e60839087fdbbb566b9115fa57da774e18835b
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Mon Apr 11 02:21:58 2011 +0400
| | | | | | | 
| | | | | | |     Modified CGNB for proper compilation
| | | | | | | 
| | | | | | | M	src/libshogun/classifier/GNB.cpp
| | | | | | | M	src/libshogun/classifier/GNB.h
| | | | | | |        
| | * | | | | commit d431a9949845012db28253cc9092c3c8d6ca2daf
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Mon Apr 11 01:28:42 2011 +0400
| | | | | | | 
| | | | | | |     Added some draft implementation of CGNB
| | | | | | | 
| | | | | | | M	src/libshogun/classifier/GNB.cpp
| | | | | | | M	src/libshogun/classifier/GNB.h
| | | | | | |        
| * | | | | | commit 81b2be8a1c0fabafcddf149ccbf56e80a6ea1858
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Mon Apr 11 15:43:04 2011 +0400
| | | | | | | 
| | | | | | |     Solved conflict with HistogramIntersectionKernel.h
| | | | | | | 
| | | | | | | A	src/libshogun/kernel/HistogramIntersectionKernel.h
| | | | | | |          
| * | | | | |   commit 5432a2f4a78c2c67e4e3c46fca9cf58e892619f0
| |\ \ \ \ \ \  Merge: 43eaa06 f981d87
| | |/ / / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |/| / / / /   Date:   Mon Apr 11 15:40:13 2011 +0400
| | |/ / / /    
| | | | | |         Merge remote branch 'upstream/master'
| | | | | |         
| * | | | |   commit 43eaa06407d05cf71a3aeb233c9d71f54e6f9ade
| |\ \ \ \ \  Merge: 6441828 01a33a7
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Mon Apr 11 01:27:43 2011 +0400
| | | | | | | 
| | | | | | |     Merge remote branch 'upstream/master'
| | | | | | |     
| | | | | | |     Conflicts:
| | | | | | |     	src/libshogun/kernel/HistogramIntersectionKernel.h
| | | | | | |        
| * | | | | | commit 64418288877b61045cef55d5c1bd852a2d69326e
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Sun Apr 10 23:03:39 2011 +0400
| | | | | | | 
| | | | | | |     Documented CGNB class and fixed dummy methods
| | | | | | | 
| | | | | | | M	src/libshogun/classifier/GNB.cpp
| | | | | | | M	src/libshogun/classifier/GNB.h
| | | | | | |        
| * | | | | | commit cedc7cb516263e87e0ba83ef6287b542515d4b54
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Sun Apr 10 21:58:07 2011 +0400
| | | | | | | 
| | | | | | |     Corrected description for proper documentation generation (my fault).
| | | | | | | 
| | | | | | | M	src/libshogun/kernel/HistogramIntersectionKernel.h
| | | | | | |        
| * | | | | | commit 42d7f4962f6b8135f519ffb0ff32cf9966cb6660
| | |_|/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |/| | | |   Date:   Sun Apr 10 16:29:55 2011 +0400
| | | | | |   
| | | | | |       Added draft of Gaussian Naive Bayes classifier and integrated it to
| | | | | |       modular interfaces.
| | | | | |   
| | | | | |   M	src/libshogun/classifier/Classifier.h
| | | | | |   A	src/libshogun/classifier/GNB.cpp
| | | | | |   A	src/libshogun/classifier/GNB.h
| | | | | |   M	src/modular/Classifier.i
| | | | | |         
* | | | | |   commit 85fa7465650e719d1e6aec33ccd041675f845f08
|\ \ \ \ \ \  Merge: f981d87 d03da92
| |_|_|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | | |   Date:   Mon Apr 11 16:14:30 2011 +0200
| | | | | |   
| | | | | |       Merge branch 'master' of https://github.com/sploving/shogun
| | | | | |       
| * | | | | commit d03da92f0bd11824690447b818edfcf751b6aeb1
| | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | Date:   Mon Apr 11 21:53:25 2011 +0800
| | | | | | 
| | | | | |     init shogun in lua
| | | | | | 
| | | | | | A	src/lua_modular/shogun.lua
| | | | | |       
* | | | | | commit f981d8778943cb92ebfb85935fba6f847aae5956
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Mon Apr 11 12:05:08 2011 +0200
| | | | | | 
| | | | | |     remove SG_UNSTABLE & whitespace cleanup
| | | | | |     
| | | | | |     Serialization support is now there SG_UNSTABLE is no longer necessary.
| | | | | |     In addition remove trailing whitespaces.
| | | | | | 
| | | | | | M	src/libshogun/features/PolyFeatures.cpp
| | | | | | M	src/libshogun/features/PolyFeatures.h
| | | | | |         
* | | | | |   commit 4b3721d5952417897ede15223d95846a4a3a16ec
|\ \ \ \ \ \  Merge: 549dde2 5ad49b9
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Mon Apr 11 11:57:56 2011 +0200
| | | | | | | 
| | | | | | |     Merge branch 'master' of https://github.com/karlnapf/shogun
| | | | | | |        
| * | | | | | commit 5ad49b9700be3552cfe552467bd1a9fa80d97a9c
| | |/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/| | | |   Date:   Sun Apr 10 20:33:05 2011 +0200
| | | | | |   
| | | | | |       implemented serialization support for this class
| | | | | |   
| | | | | |   M	src/libshogun/features/PolyFeatures.cpp
| | | | | |   M	src/libshogun/features/PolyFeatures.h
| | | | | |         
* | | | | |   commit 549dde2a12179e83e0789d0217dd05fdab40b26f
|\ \ \ \ \ \  Merge: 9985a76 22614ce
| | |/ / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | | |   Date:   Mon Apr 11 11:52:46 2011 +0200
| | | | | |   
| | | | | |       Merge branch 'master' of https://github.com/sploving/shogun
| | | | | |       
| * | | | | commit 22614ce5e752774a1504c886c01e4f7712772e2a
| | |_|/ /  Author: Baozeng Ding <sploving1@gmail.com>
| |/| | |   Date:   Mon Apr 11 17:15:05 2011 +0800
| | | | |   
| | | | |       lua vector support
| | | | |   
| | | | |   M	src/lua_modular/swig_typemaps.i
| | | | |      
* | | | | commit 9985a76a5e4d56afc114d0265a775c15f7674fd3
|/ / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Mon Apr 11 11:50:41 2011 +0200
| | | |   
| | | |       Add csharp support (for mono)
| | | |   
| | | |   M	src/configure
| | | |   A	src/csharp_modular/sg_print_functions.cpp
| | | |   A	src/csharp_modular/swig_typemaps.i
| | | |   M	src/modular/SGBase.i
| | | |     
* | | | commit 412d64388c7e9aeb41ba1b6d4d742fbd98c4c745
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Apr 11 10:20:01 2011 +0200
| | | | 
| | | |     whitespace fix
| | | | 
| | | | M	src/libshogun/kernel/DotKernel.h
| | | |       
* | | |   commit 9c534b9613f4d05c46a6460d4e749c2385262bbf
|\ \ \ \  Merge: 572e89f 33c7e58
| | |_|/  Author: Siddharth Kherada <siddharthkherada27@gmail.com>
| |/| |   Date:   Mon Apr 11 09:50:17 2011 +0530
| | | |   
| | | |       Merge commit 'upstream/master'
| | | |       
| * | |   commit 33c7e586723082a65ce647fda47fc9ebeb8c8074
| |\ \ \  Merge: e4560dc 01a33a7
| | | |/  Author: Jakub Jirku <jakub.jirku@gmail.com>
| | |/|   Date:   Sun Apr 10 23:26:25 2011 +0200
| | | |   
| | | |       Merge remote-tracking branch 'upstream/master'
| | | |       
| | | |       Conflicts:
| | | |       	src/libshogun/kernel/Kernel.cpp
| | | |       	src/libshogun/kernel/Kernel.h
| | | |     
| | * | commit 01a33a7338cbd3ece6148940288954b89f28744d
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Mon Apr 11 02:32:20 2011 +0530
| | | | 
| | | |     Add doc for parameter in SphericalKernel
| | | | 
| | | | M	src/libshogun/kernel/SphericalKernel.h
| | | |       
| | * |   commit 05a1d7de151b137d144e045ced9e4564d7ee27b8
| | |\ \  Merge: 572762e 3a2e2f6
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Sun Apr 10 22:12:49 2011 +0200
| | | | | 
| | | | |     Merge branch 'master' of https://github.com/diver-in-sky/shogun
| | | | |     
| | | | |     Fix merge conflicts in (stemming from changed kernel enums)
| | | | |     	src/libshogun/kernel/Kernel.cpp
| | | | |     	src/libshogun/kernel/Kernel.h
| | | | |      
| | | * | commit 3a2e2f6493195e5f93448dd9d66df50e493c20b2
| | | | | Author: Andrew <tereskin@gmail.com>
| | | | | Date:   Sun Apr 10 21:14:59 2011 +0400
| | | | | 
| | | | |     test anova kernel dynamic programming implementations - same result on test data
| | | | | 
| | | | | M	examples/undocumented/python_modular/kernel_anova_modular.py
| | | | | M	src/libshogun/kernel/ANOVAKernel.cpp
| | | | | M	src/libshogun/kernel/ANOVAKernel.h
| | | | |        
| | | * |   commit 14f32c560834554e4f80c7510594b0251f7c9eed
| | | |\ \  Merge: 0471c24 e49b406
| | | | |/  Author: Andrew <tereskin@gmail.com>
| | | | |   Date:   Sun Apr 10 15:41:56 2011 +0400
| | | | |   
| | | | |       Merge remote branch 'upstream/master'
| | | | |       
| | | | |       Conflicts:
| | | | |       	src/libshogun/kernel/Kernel.cpp
| | | | |       	src/libshogun/kernel/Kernel.h
| | | | |      
| | | * | commit 0471c24c733301e7321d6cc726e3520782e99626
| | | | | Author: Andrew <tereskin@gmail.com>
| | | | | Date:   Sun Apr 10 15:35:40 2011 +0400
| | | | | 
| | | | |     python_modular example for ANOVA kernel added
| | | | | 
| | | | | A	examples/undocumented/python_modular/kernel_anova_modular.py
| | | | | M	src/libshogun/kernel/ANOVAKernel.cpp
| | | | | M	src/libshogun/kernel/ANOVAKernel.h
| | | | |      
| | | * | commit 39b97d99178dfc08b94144922c2b271a607926a0
| | | | | Author: Andrew <tereskin@gmail.com>
| | | | | Date:   Sun Apr 10 04:07:25 2011 +0400
| | | | | 
| | | | |     introductd ANOVA kernel with 2 recursive calculation algorithms
| | | | | 
| | | | | A	src/libshogun/kernel/ANOVAKernel.cpp
| | | | | A	src/libshogun/kernel/ANOVAKernel.h
| | | | | M	src/libshogun/kernel/Kernel.cpp
| | | | | M	src/libshogun/kernel/Kernel.h
| | | | | M	src/modular/Kernel.i
| | | | |      
| | | * | commit eac9bbdff3d49a8510f5e385018f5204ceb66e5d
| | | | | Author: Andrew <tereskin@gmail.com>
| | | | | Date:   Sun Apr 10 02:33:22 2011 +0400
| | | | | 
| | | | |     serialization of distance in TStudentKernel
| | | | | 
| | | | | M	src/libshogun/kernel/TStudentKernel.cpp
| | | | |      
| | * | | commit 572762e679e22553fae6003fdafcab045a69d524
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Sun Apr 10 22:03:31 2011 +0200
| | | | | 
| | | | |     fix the latex code in some of the newer kernel documentation
| | | | |     
| | | | |     ams math is not avilable, so commands like text, lVert etc won't work
| | | | | 
| | | | | M	src/libshogun/kernel/HistogramIntersectionKernel.h
| | | | | M	src/libshogun/kernel/SphericalKernel.h
| | | | | M	src/libshogun/kernel/SplineKernel.h
| | | | |        
| | * | |   commit e8cd2827cfe080ccc08d155380c840c14869d11c
| | |\ \ \  Merge: e49b406 6a2967b
| | | |_|/  Author: Soeren Sonnenburg <sonne@debian.org>
| | |/| |   Date:   Sun Apr 10 21:49:18 2011 +0200
| | | | |   
| | | | |       Merge branch 'master' of https://github.com/sbos/shogun
| | | | |       
| | | | |       Resolve conflicts in:
| | | | |       	src/libshogun/kernel/Kernel.cpp
| | | | |       	src/libshogun/kernel/Kernel.h
| | | | |       	src/modular/Kernel.i
| | | | |      
| | | * | commit 6a2967b0287ada2f1b47fa3c6d77018345131677
| | | | | Author: Sergey Bartunov <sbos.net@gmail.com>
| | | | | Date:   Sun Apr 10 11:52:44 2011 +0400
| | | | | 
| | | | |     SplineKernel added
| | | | | 
| | | | | M	src/libshogun/kernel/Kernel.cpp
| | | | | M	src/libshogun/kernel/Kernel.h
| | | | | A	src/libshogun/kernel/SplineKernel.cpp
| | | | | A	src/libshogun/kernel/SplineKernel.h
| | | | | M	src/modular/Kernel.i
| | | | |      
| * | | | commit e4560dcd114f761237df3c2a1330e12ffb01e703
| | | | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | | | Date:   Sun Apr 10 12:35:46 2011 +0200
| | | | | 
| | | | |     New kernel: log kernel
| | | | | 
| | | | | M	src/libshogun/kernel/Kernel.cpp
| | | | | M	src/libshogun/kernel/Kernel.h
| | | | | A	src/libshogun/kernel/LogKernel.cpp
| | | | | A	src/libshogun/kernel/LogKernel.h
| | | | | M	src/modular/Kernel.i
| | | | |      
| * | | | commit 8ed0784168de73384222b92bb60abb52426a445b
| | | | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | | | Date:   Sun Apr 10 10:23:42 2011 +0200
| | | | | 
| | | | |     Serialization fix 2 -- .h file
| | | | | 
| | | | | M	src/libshogun/kernel/PowerKernel.h
| | | | |      
| * | | | commit d341cc265d439e1dcaac3af2477e843f94656826
| | | | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | | | Date:   Sun Apr 10 10:22:46 2011 +0200
| | | | | 
| | | | |     Serialization fix.
| | | | | 
| | | | | M	src/libshogun/kernel/PowerKernel.cpp
| | | | |        
| * | | |   commit 9cafd17dea18c4b740afdc4e26f2a790271a8f76
| |\ \ \ \  Merge: e45892c e49b406
| | |/ / /  Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | | |   Date:   Sun Apr 10 10:16:59 2011 +0200
| | | | |   
| | | | |       Merge remote-tracking branch 'upstream/master'
| | | | |       
| | | | |       Conflicts:
| | | | |       	src/libshogun/kernel/Kernel.cpp
| | | | |       	src/libshogun/kernel/Kernel.h
| | | | |      
| * | | | commit e45892c65f3754b04e539aecba00e4e30d66269e
| | |_|/  Author: Jakub Jirku <jakub.jirku@gmail.com>
| |/| |   Date:   Sun Apr 10 00:04:05 2011 +0200
| | | |   
| | | |       New kernel: power (aka unrectified triangular)
| | | |   
| | | |   M	src/libshogun/kernel/Kernel.cpp
| | | |   M	src/libshogun/kernel/Kernel.h
| | | |   A	src/libshogun/kernel/PowerKernel.cpp
| | | |   A	src/libshogun/kernel/PowerKernel.h
| | | |   M	src/modular/Kernel.i
| | | |     
* | | | commit 572e89f907d5aab4b20ec1294dd8875d10c93a90
| | | | Author: Siddharth Kherada <siddharthkherada27@gmail.com>
| | | | Date:   Sun Apr 10 15:02:48 2011 +0530
| | | | 
| | | |     Removed spaces
| | | | 
| | | | M	src/libshogun/kernel/WaveletKernel.h
| | | |     
* | | | commit ef11aa373768ed8e45a8a88cbafeb597dec80836
| |/ /  Author: Siddharth Kherada <siddharthkherada27@gmail.com>
|/| |   Date:   Sun Apr 10 12:22:42 2011 +0530
| | |   
| | |       Updated GPL header
| | |   
| | |   M	src/libshogun/kernel/WaveletKernel.cpp
| | |   M	src/libshogun/kernel/WaveletKernel.h
| | |    
* | | commit e49b40605aa78998dbcd78c392fce4ebac2f3f54
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sun Apr 10 05:05:05 2011 +0530
| | | 
| | |     Fixed get_name in SphericalKernel
| | | 
| | | M	src/libshogun/kernel/SphericalKernel.h
| | |    
* | | commit 54a25811f91b3ebd094d3e58506e67acd9ec8481
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sun Apr 10 04:48:45 2011 +0530
| | | 
| | |     Modify copyrights in sphericalkernel
| | | 
| | | M	src/libshogun/kernel/SphericalKernel.cpp
| | | M	src/libshogun/kernel/SphericalKernel.h
| | |    
* | | commit 662d190d54788ce0c7b66945e478655d24768538
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sun Apr 10 04:46:27 2011 +0530
| | | 
| | |     Add K_SPHERICAL to kernel files
| | | 
| | | M	src/libshogun/kernel/Kernel.cpp
| | | M	src/modular/Kernel.i
| | |    
* | | commit dd967ce16ece3123fc04c70c05b02f16860c56eb
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sun Apr 10 04:33:05 2011 +0530
| | | 
| | |     Fixed constructor in spherical kernel
| | | 
| | | M	src/libshogun/kernel/SphericalKernel.cpp
| | | M	src/libshogun/kernel/SphericalKernel.h
| | |    
* | | commit 7a3ed87563a325489530d87719887a5acfb004e7
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Sun Apr 10 04:06:16 2011 +0530
| |   
| |       Added spherical kernel.
| |   
| |   M	src/libshogun/kernel/Kernel.h
| |   A	src/libshogun/kernel/SphericalKernel.cpp
| |   A	src/libshogun/kernel/SphericalKernel.h
| |   M	src/modular/Kernel.i
| |     
* |   commit 461e05db2be4f980aaec58e430ec8f6445ba9cfb
|\ \  Merge: a1b95d5 6151a41
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sat Apr 9 23:44:41 2011 +0200
| | | 
| | |     Merge branch 'master' of https://github.com/frx/shogun
| | |    
| * | commit 6151a419b02c37c3ce206ce33f2bdb4bc5560b1b
| |/  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Sun Apr 10 02:53:57 2011 +0530
| |   
| |       Added width as m_parameter in DistanceKernel
| |   
| |   M	src/libshogun/kernel/DistanceKernel.cpp
| |   M	src/libshogun/kernel/DistanceKernel.h
| |   
* | commit a1b95d5b076d6a7bc1ffe97b6a7723b56e6fe0f2
| | Author: Marcin Copik <mcopik@gmail.com>
| | Date:   Sat Apr 9 22:49:47 2011 +0200
| | 
| |     Added implementation of functions for I/O of bool matrices and string lists
| | 
| | M	src/libshogun/lib/File.cpp
| |   
* | commit 15b28f13df33fa6e21000fbac20cdacb107db77b
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Sat Apr 9 23:39:53 2011 +0200
|   
|       get_name needs to return the class name (withough C prefix)
|       
|       This patch goes through all *.h files changing get_name to return the
|       class name of the of the class withouth the C prefix. Since Array*.h
|       contained functions to set the array name, the array set_name and
|       get_name functions have been renamed to set_array_name / get_array_name
|       to fix the naming clash.
|   
|   M	src/libshogun/base/DynArray.h
|   M	src/libshogun/classifier/svm/gpdtsolve.h
|   M	src/libshogun/distance/MinkowskiMetric.h
|   M	src/libshogun/kernel/AUCKernel.h
|   M	src/libshogun/kernel/CauchyKernel.h
|   M	src/libshogun/kernel/Chi2Kernel.h
|   M	src/libshogun/kernel/CommUlongStringKernel.h
|   M	src/libshogun/kernel/CommWordStringKernel.h
|   M	src/libshogun/kernel/ConstKernel.h
|   M	src/libshogun/kernel/DistanceKernel.h
|   M	src/libshogun/kernel/FixedDegreeStringKernel.h
|   M	src/libshogun/kernel/GaussianMatchStringKernel.h
|   M	src/libshogun/kernel/GaussianShiftKernel.h
|   M	src/libshogun/kernel/GaussianShortRealKernel.h
|   M	src/libshogun/kernel/HistogramIntersectionKernel.h
|   M	src/libshogun/kernel/HistogramWordStringKernel.h
|   M	src/libshogun/kernel/Kernel.cpp
|   M	src/libshogun/kernel/Kernel.h
|   M	src/libshogun/kernel/LinearKernel.h
|   M	src/libshogun/kernel/LinearStringKernel.h
|   M	src/libshogun/kernel/LocalAlignmentStringKernel.h
|   M	src/libshogun/kernel/LocalityImprovedStringKernel.h
|   M	src/libshogun/kernel/MatchWordStringKernel.h
|   M	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
|   M	src/libshogun/kernel/PolyMatchStringKernel.h
|   M	src/libshogun/kernel/PolyMatchWordStringKernel.h
|   M	src/libshogun/kernel/SalzbergWordStringKernel.h
|   M	src/libshogun/kernel/SigmoidKernel.h
|   M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
|   M	src/libshogun/kernel/SpectrumMismatchRBFKernel.h
|   M	src/libshogun/kernel/SpectrumRBFKernel.h
|   M	src/libshogun/kernel/TStudentKernel.h
|   M	src/libshogun/kernel/TensorProductPairKernel.h
|   M	src/libshogun/kernel/WaveKernel.h
|   M	src/libshogun/kernel/WaveletKernel.h
|   M	src/libshogun/kernel/WeightedCommWordStringKernel.h
|   M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
|   M	src/libshogun/lib/Array.h
|   M	src/libshogun/lib/Array2.h
|   M	src/libshogun/lib/Array3.h
|   M	src/libshogun/regression/svr/LibSVR.h
|   M	src/libshogun/structure/DynProg.cpp
|    
*   commit 6c3339d8638d1b1184164c283e9a07e9f524e118
|\  Merge: edb5c2c 02dab1c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Apr 9 22:01:05 2011 +0200
| | 
| |     Merge branch 'master' of https://github.com/SergeyLisitsyn/shogun into SergeyLisitsyn-master
| |   
| * commit 02dab1c3930c9898a214ef549b461344d23773f0
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 9 23:56:09 2011 +0400
| | 
| |     Changed initialization order to avoid warnings.
| | 
| | M	src/libshogun/classifier/KNN.cpp
| |   
| * commit a9264fbf248f0d31b8a136509b1db11e3808a270
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 9 23:47:40 2011 +0400
| | 
| |     Removed _ from k_. (Commit the Great)
| | 
| | M	src/libshogun/classifier/KNN.cpp
| |   
| * commit de4b2cc34efd8a4a5cfaa1983d7a4a6539919725
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 9 23:41:38 2011 +0400
| | 
| |     Fixed some naming
| | 
| | M	src/libshogun/classifier/KNN.cpp
| | M	src/libshogun/classifier/KNN.h
| |   
| * commit c71f175853bd8f881edb02984b37c29435445f6b
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 9 21:13:07 2011 +0400
| | 
| |     Made distance serializable in WaveKernel
| | 
| | M	src/libshogun/kernel/WaveKernel.cpp
| |   
| * commit 1d2927c0e7594fdf03797af856431402434a99dc
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 9 21:12:31 2011 +0400
| | 
| |     Made distance serializable in CauchyKernel
| | 
| | M	src/libshogun/kernel/CauchyKernel.cpp
| |   
| * commit d9956db0abf9ae1102cd5631d76f56edf9c4417e
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 9 20:47:46 2011 +0400
| | 
| |     Generalized classifying in CKNN with weighting, fixed copyright
| | 
| | M	src/libshogun/classifier/KNN.cpp
| | M	src/libshogun/classifier/KNN.h
| |   
| * commit e3d69270b6b45b2e7022b7494005132c9cd4d9b8
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 9 20:17:02 2011 +0400
| | 
| |     Added initialization in all constructors of WaveKernel
| | 
| | M	src/libshogun/kernel/WaveKernel.cpp
| |   
| * commit 02a46e42024d30a2e6e253f81174ad2e846cac66
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 9 20:16:39 2011 +0400
| | 
| |     Added initialization in all constructors of CauchyKernel
| | 
| | M	src/libshogun/kernel/CauchyKernel.cpp
| |   
| * commit ac0f7c72085a839bf3b8bb670880adaa5e71fa01
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 9 19:45:53 2011 +0400
| | 
| |     Made proper initialization, fixed copyright
| | 
| | M	src/libshogun/kernel/WaveKernel.cpp
| | M	src/libshogun/kernel/WaveKernel.h
| |   
| * commit 7e65c81659da1789bd0d40ad659808cf94b692dd
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 9 19:44:59 2011 +0400
| | 
| |     Made proper initialization, fixed copyright
| | 
| | M	src/libshogun/kernel/CauchyKernel.cpp
| | M	src/libshogun/kernel/CauchyKernel.h
| |   
| * commit 226cc1ec125fc16f0b7a4cb83b6edf8f0688bfad
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 9 19:10:43 2011 +0400
| | 
| |     Made CKNN capable of weighted classifying.
| | 
| | M	src/libshogun/classifier/KNN.cpp
| | M	src/libshogun/classifier/KNN.h
| |   
* | commit edb5c2cef547cf6b49c3afe9c5f9282befdc23db
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Sat Apr 9 13:44:46 2011 -0400
| | 
| |     Fixing serializattion stuff in ExponentialKernel (and learning git the hard way :P )
| | 
| | M	src/libshogun/kernel/ExponentialKernel.cpp
| |     
* |   commit e5ad08d8f70750cbb964e4c76cb980b63aaa0f63
|\ \  Merge: 039e23a d35eae9
| | | Author: Justin Patera <serialhex@gmail.com>
| | | Date:   Sat Apr 9 13:42:55 2011 -0400
| | | 
| | |     Merge branch 'master' of github.com:serialhex/shogun
| | |      
| * |   commit d35eae9c2d0cf8d0e70fef2f5a52a96082dbea60
| |\ \  Merge: 24d8622 c7cb655
| | | | Author: Justin Patera <serialhex@gmail.com>
| | | | Date:   Sat Apr 9 13:39:57 2011 -0400
| | | | 
| | | |     Merge branch 'master' of github.com:serialhex/shogun
| | | |       
* | | |   commit 039e23afd81c6d53d8467b871a13fe3be13af00c
|\ \ \ \  Merge: 24d8622 c7cb655
| |/ / /  Author: Justin Patera <serialhex@gmail.com>
|/| / /   Date:   Sat Apr 9 13:39:57 2011 -0400
| |/ /    
| | |         Fixing serialization stuff...
| | |    
| * | commit c7cb65534a969b1a1c561012bdbf05890a563a0d
| | | Author: Justin Patera <serialhex@gmail.com>
| | | Date:   Sat Apr 9 13:16:15 2011 -0400
| | | 
| | |     Added Distance serialization to ExponentialKernel
| | | 
| | | M	src/libshogun/kernel/ExponentialKernel.cpp
| | |    
* | | commit 24d86225d31f46ee3959725acc9dfea0e9588f3b
|/ /  Author: Justin Patera <serialhex@gmail.com>
| |   Date:   Sat Apr 9 13:16:15 2011 -0400
| |   
| |       Added Distance serialization to ExponentialKernel
| |   
| |   M	src/libshogun/kernel/ExponentialKernel.cpp
| |   
* | commit ff346ba8f8fccfc55f403ee528c7095116ec7591
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Sat Apr 9 12:36:49 2011 -0400
| | 
| |     Added ExponentialKernel to the various Kernel.* files so it may be used
| | 
| | M	src/libshogun/kernel/Kernel.cpp
| | M	src/libshogun/kernel/Kernel.h
| | M	src/modular/Kernel.i
| |   
* | commit de8b0ada71057102c4aa66ba64044cc6f13915d1
|/  Author: Justin Patera <serialhex@gmail.com>
|   Date:   Sat Apr 9 12:31:55 2011 -0400
|   
|       Added ExponentialKernel to list of available kernels
|   
|   A	src/libshogun/kernel/ExponentialKernel.cpp
|   A	src/libshogun/kernel/ExponentialKernel.h
|  
* commit 385ae970dfb80caaa0707095a68b21a0ab5cd090
| Author: asia <asia@asia.(none)>
| Date:   Sat Apr 9 14:53:36 2011 +0200
| 
|     Introduced new kernel: Multiquadric Kernel
| 
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
|  
* commit c70c755f850d2b5804838800655a5db97e764ccd
| Author: Rafał Surowiecki <rafal@surowiecki.pl>
| Date:   Sat Apr 9 13:12:09 2011 +0200
| 
|     Introduced new kernel: Rational Quadratic Kernel
| 
| M	src/libshogun/kernel/Kernel.h
|  
* commit bf1f8a1837d1a1ce34ebe03f958289dbdff5b9b5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 9 15:15:39 2011 +0200
| 
|     remove trailing whitespaces from Chris' patch
| 
| M	applications/arts/arts.py
| M	applications/arts/genomic.py
| M	applications/arts/signal_sensor.py
| M	applications/arts/util.py
|  
* commit e9df7384788a5717e3e8f41e99aa66ebc249be53
| Author: cwidmer <cwidmer@tue.mpg.de>
| Date:   Sat Apr 9 14:58:04 2011 +0200
| 
|     added chunking procedure that splits contigs into smaller pieces and thus reduces the memory foot-print. Additional refactoring and reformatting in order to respect PEP8.
| 
| D	applications/arts/arts
| A	applications/arts/arts.py
| M	applications/arts/genomic.py
| M	applications/arts/signal_sensor.py
| M	applications/arts/util.py
|  
* commit 034b37ca7ff4ee2c2ad56d6c36616ebcfe4b4596
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 9 15:11:46 2011 +0200
| 
|     remove trailing whitespaces and minor formatting changes
| 
| M	src/libshogun/kernel/HistogramIntersectionKernel.h
| M	src/libshogun/kernel/TStudentKernel.cpp
| M	src/libshogun/kernel/TStudentKernel.h
|  
* commit 7a0e639afad3745e993c9d635362e3843475f255
| Author: Andrew <tereskin@gmail.com>
| Date:   Sat Apr 9 13:39:27 2011 +0400
| 
|     typo in kernel description
| 
| M	src/libshogun/kernel/TStudentKernel.h
|  
* commit ae0d00f7c13244bdb5f58e850e090562309bf4ef
| Author: Andrew <tereskin@gmail.com>
| Date:   Sat Apr 9 13:30:49 2011 +0400
| 
|     add T-Student kernel in Kernel.h and in modular
| 
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/modular/Kernel.i
|  
* commit e041cf940cf2206f699612dc51566a7f38450adb
| Author: Andrew <tereskin@gmail.com>
| Date:   Sat Apr 9 13:28:42 2011 +0400
| 
|     add Generalized T-Student Kernel
| 
| A	src/libshogun/kernel/TStudentKernel.cpp
| A	src/libshogun/kernel/TStudentKernel.h
|  
* commit ed33ad8110c139f7895ec750fd8349c409f35e4c
| Author: Andrew <tereskin@gmail.com>
| Date:   Sat Apr 9 13:20:10 2011 +0400
| 
|     fix name of kernel in description
| 
| M	src/libshogun/kernel/CauchyKernel.h
|  
* commit 4fed492402928739be90d6f4a315dd7b0dd5e787
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Apr 9 03:28:26 2011 +0400
| 
|     Introduced new kernel: CauchyKernel, corrected misprint at WaveKernel description
| 
| A	src/libshogun/kernel/CauchyKernel.cpp
| A	src/libshogun/kernel/CauchyKernel.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/WaveKernel.h
| M	src/modular/Kernel.i
|  
* commit 33d7b29e494cab24399adf640c427b1aba79af7b
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Apr 8 22:01:51 2011 +0400
| 
|     Made HistogramIntersectionKernel generalized with introducing parameter beta
| 
| M	src/libshogun/kernel/HistogramIntersectionKernel.cpp
| M	src/libshogun/kernel/HistogramIntersectionKernel.h
|  
* commit 9d96f57734af2a2b8429a082a3467f1a55c9161f
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Apr 9 02:30:05 2011 +0400
| 
|     Introduced new kernel: WaveKernel
| 
| M	src/libshogun/kernel/Kernel.h
| A	src/libshogun/kernel/WaveKernel.cpp
| A	src/libshogun/kernel/WaveKernel.h
| M	src/modular/Kernel.i
|  
* commit d7503c3841615ac28a6545e28508ff6ba9719206
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 9 00:13:42 2011 +0200
| 
|     remove also includes of boosting algos for now.
| 
| M	src/modular/Classifier.i
|  
* commit 9bb3b2eb87b79547c2fc7ea20039dc9257dd6987
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 9 00:00:57 2011 +0200
| 
|     remove boosting directory
|     
|     If we merge again we have to merge with newer
|     multiboost algorithms anyway. The current ones show many warnings and
|     cause errors when generating the documentation.
| 
| D	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithm.cpp
| D	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithm.h
| D	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithmLSHTC.cpp
| D	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithmLSHTC.h
| D	src/libshogun/classifier/boosting/Algorithms/RegressionStumpAlgorithm.h
| D	src/libshogun/classifier/boosting/Algorithms/SparseStumpAlgorithm.h
| D	src/libshogun/classifier/boosting/Algorithms/StumpAlgorithm.h
| D	src/libshogun/classifier/boosting/Algorithms/StumpAlgorithmLSHTC.h
| D	src/libshogun/classifier/boosting/Bandits/Exp3.cpp
| D	src/libshogun/classifier/boosting/Bandits/Exp3.h
| D	src/libshogun/classifier/boosting/Bandits/Exp3G.cpp
| D	src/libshogun/classifier/boosting/Bandits/Exp3G.h
| D	src/libshogun/classifier/boosting/Bandits/Exp3G2.cpp
| D	src/libshogun/classifier/boosting/Bandits/Exp3G2.h
| D	src/libshogun/classifier/boosting/Bandits/Exp3P.cpp
| D	src/libshogun/classifier/boosting/Bandits/Exp3P.h
| D	src/libshogun/classifier/boosting/Bandits/GenericBanditAlgorithm.cpp
| D	src/libshogun/classifier/boosting/Bandits/GenericBanditAlgorithm.h
| D	src/libshogun/classifier/boosting/Bandits/Random.cpp
| D	src/libshogun/classifier/boosting/Bandits/Random.h
| D	src/libshogun/classifier/boosting/Bandits/UCBK.cpp
| D	src/libshogun/classifier/boosting/Bandits/UCBK.h
| D	src/libshogun/classifier/boosting/Bandits/UCBKRandomized.cpp
| D	src/libshogun/classifier/boosting/Bandits/UCBKRandomized.h
| D	src/libshogun/classifier/boosting/Bandits/UCBKV.cpp
| D	src/libshogun/classifier/boosting/Bandits/UCBKV.h
| D	src/libshogun/classifier/boosting/BanditsLS/Exp3GLS.cpp
| D	src/libshogun/classifier/boosting/BanditsLS/Exp3GLS.h
| D	src/libshogun/classifier/boosting/BanditsLS/Exp3LS.cpp
| D	src/libshogun/classifier/boosting/BanditsLS/Exp3LS.h
| D	src/libshogun/classifier/boosting/BanditsLS/GenericBanditAlgorithmLS.cpp
| D	src/libshogun/classifier/boosting/BanditsLS/GenericBanditAlgorithmLS.h
| D	src/libshogun/classifier/boosting/BanditsLS/UCTLS.cpp
| D	src/libshogun/classifier/boosting/BanditsLS/UCTLS.h
| D	src/libshogun/classifier/boosting/Bzip2/Bzip2Wrapper.cpp
| D	src/libshogun/classifier/boosting/Bzip2/Bzip2Wrapper.h
| D	src/libshogun/classifier/boosting/Bzip2/blocksort.c
| D	src/libshogun/classifier/boosting/Bzip2/bzip2.c
| D	src/libshogun/classifier/boosting/Bzip2/bzip2recover.c
| D	src/libshogun/classifier/boosting/Bzip2/bzlib.c
| D	src/libshogun/classifier/boosting/Bzip2/bzlib.h
| D	src/libshogun/classifier/boosting/Bzip2/bzlib_private.h
| D	src/libshogun/classifier/boosting/Bzip2/compress.c
| D	src/libshogun/classifier/boosting/Bzip2/crctable.c
| D	src/libshogun/classifier/boosting/Bzip2/decompress.c
| D	src/libshogun/classifier/boosting/Bzip2/dlltest.c
| D	src/libshogun/classifier/boosting/Bzip2/huffman.c
| D	src/libshogun/classifier/boosting/Bzip2/mk251.c
| D	src/libshogun/classifier/boosting/Bzip2/randtable.c
| D	src/libshogun/classifier/boosting/Bzip2/spewG.c
| D	src/libshogun/classifier/boosting/Bzip2/unzcrash.c
| D	src/libshogun/classifier/boosting/Classifiers/ABMHClassifierYahoo.cpp
| D	src/libshogun/classifier/boosting/Classifiers/ABMHClassifierYahoo.h
| D	src/libshogun/classifier/boosting/Classifiers/AdaBoostMHClassifier.cpp
| D	src/libshogun/classifier/boosting/Classifiers/AdaBoostMHClassifier.h
| D	src/libshogun/classifier/boosting/Classifiers/BrownBoostClassifier.cpp
| D	src/libshogun/classifier/boosting/Classifiers/BrownBoostClassifier.h
| D	src/libshogun/classifier/boosting/Classifiers/ExampleResults.cpp
| D	src/libshogun/classifier/boosting/Classifiers/ExampleResults.h
| D	src/libshogun/classifier/boosting/Classifiers/FilterBoostClassifier.cpp
| D	src/libshogun/classifier/boosting/Classifiers/FilterBoostClassifier.h
| D	src/libshogun/classifier/boosting/Classifiers/LogitBoostClassifier.cpp
| D	src/libshogun/classifier/boosting/Classifiers/LogitBoostClassifier.h
| D	src/libshogun/classifier/boosting/Defaults.h
| D	src/libshogun/classifier/boosting/IO/ADTreeData.cpp
| D	src/libshogun/classifier/boosting/IO/ADTreeData.h
| D	src/libshogun/classifier/boosting/IO/ArffParser.cpp
| D	src/libshogun/classifier/boosting/IO/ArffParser.h
| D	src/libshogun/classifier/boosting/IO/ArffParserBzip2.cpp
| D	src/libshogun/classifier/boosting/IO/ArffParserBzip2.h
| D	src/libshogun/classifier/boosting/IO/EncodeData.cpp
| D	src/libshogun/classifier/boosting/IO/EncodeData.h
| D	src/libshogun/classifier/boosting/IO/ExtendableData.cpp
| D	src/libshogun/classifier/boosting/IO/ExtendableData.h
| D	src/libshogun/classifier/boosting/IO/GenericParser.h
| D	src/libshogun/classifier/boosting/IO/HaarData.cpp
| D	src/libshogun/classifier/boosting/IO/HaarData.h
| D	src/libshogun/classifier/boosting/IO/InputData.cpp
| D	src/libshogun/classifier/boosting/IO/InputData.h
| D	src/libshogun/classifier/boosting/IO/LSHTCParser.cpp
| D	src/libshogun/classifier/boosting/IO/LSHTCParser.h
| D	src/libshogun/classifier/boosting/IO/NameMap.cpp
| D	src/libshogun/classifier/boosting/IO/NameMap.h
| D	src/libshogun/classifier/boosting/IO/OutputInfo.cpp
| D	src/libshogun/classifier/boosting/IO/OutputInfo.h
| D	src/libshogun/classifier/boosting/IO/ParasiteData.h
| D	src/libshogun/classifier/boosting/IO/RawData.cpp
| D	src/libshogun/classifier/boosting/IO/RawData.h
| D	src/libshogun/classifier/boosting/IO/SVMLightParser.cpp
| D	src/libshogun/classifier/boosting/IO/SVMLightParser.h
| D	src/libshogun/classifier/boosting/IO/Serialization.cpp
| D	src/libshogun/classifier/boosting/IO/Serialization.h
| D	src/libshogun/classifier/boosting/IO/SortedData.cpp
| D	src/libshogun/classifier/boosting/IO/SortedData.h
| D	src/libshogun/classifier/boosting/IO/TxtParser.cpp
| D	src/libshogun/classifier/boosting/IO/TxtParser.h
| D	src/libshogun/classifier/boosting/Kmeans/KCtree.cpp
| D	src/libshogun/classifier/boosting/Kmeans/KCtree.h
| D	src/libshogun/classifier/boosting/Kmeans/KCutil.cpp
| D	src/libshogun/classifier/boosting/Kmeans/KCutil.h
| D	src/libshogun/classifier/boosting/Kmeans/KM_ANN.cpp
| D	src/libshogun/classifier/boosting/Kmeans/KM_ANN.h
| D	src/libshogun/classifier/boosting/Kmeans/KMcenters.cpp
| D	src/libshogun/classifier/boosting/Kmeans/KMcenters.h
| D	src/libshogun/classifier/boosting/Kmeans/KMdata.cpp
| D	src/libshogun/classifier/boosting/Kmeans/KMdata.h
| D	src/libshogun/classifier/boosting/Kmeans/KMeans.cpp
| D	src/libshogun/classifier/boosting/Kmeans/KMeans.h
| D	src/libshogun/classifier/boosting/Kmeans/KMfilterCenters.cpp
| D	src/libshogun/classifier/boosting/Kmeans/KMfilterCenters.h
| D	src/libshogun/classifier/boosting/Kmeans/KMlocal.cpp
| D	src/libshogun/classifier/boosting/Kmeans/KMlocal.h
| D	src/libshogun/classifier/boosting/Kmeans/KMrand.cpp
| D	src/libshogun/classifier/boosting/Kmeans/KMrand.h
| D	src/libshogun/classifier/boosting/Kmeans/KMterm.cpp
| D	src/libshogun/classifier/boosting/Kmeans/KMterm.h
| D	src/libshogun/classifier/boosting/Kmeans/files
| D	src/libshogun/classifier/boosting/Others/Example.h
| D	src/libshogun/classifier/boosting/Others/Rates.h
| D	src/libshogun/classifier/boosting/StrongLearners/ABMHLearnerYahoo.cpp
| D	src/libshogun/classifier/boosting/StrongLearners/ABMHLearnerYahoo.h
| D	src/libshogun/classifier/boosting/StrongLearners/ADTreeLearner.cpp
| D	src/libshogun/classifier/boosting/StrongLearners/ADTreeLearner.h
| D	src/libshogun/classifier/boosting/StrongLearners/AdaBoostMHLearner.cpp
| D	src/libshogun/classifier/boosting/StrongLearners/AdaBoostMHLearner.h
| D	src/libshogun/classifier/boosting/StrongLearners/BrownBoostLearner.cpp
| D	src/libshogun/classifier/boosting/StrongLearners/BrownBoostLearner.h
| D	src/libshogun/classifier/boosting/StrongLearners/FilterBoostLearner.cpp
| D	src/libshogun/classifier/boosting/StrongLearners/FilterBoostLearner.h
| D	src/libshogun/classifier/boosting/StrongLearners/GenericStrongLearner.h
| D	src/libshogun/classifier/boosting/StrongLearners/LogitBoostLearner.cpp
| D	src/libshogun/classifier/boosting/StrongLearners/LogitBoostLearner.h
| D	src/libshogun/classifier/boosting/Utils/Args.cpp
| D	src/libshogun/classifier/boosting/Utils/Args.h
| D	src/libshogun/classifier/boosting/Utils/ClassHierarchy.cpp
| D	src/libshogun/classifier/boosting/Utils/ClassHierarchy.h
| D	src/libshogun/classifier/boosting/Utils/MathUtils.cpp
| D	src/libshogun/classifier/boosting/Utils/MathematicalTools.h
| D	src/libshogun/classifier/boosting/Utils/StreamTokenizer.h
| D	src/libshogun/classifier/boosting/Utils/UCTutils.cpp
| D	src/libshogun/classifier/boosting/Utils/UCTutils.h
| D	src/libshogun/classifier/boosting/Utils/Utils.cpp
| D	src/libshogun/classifier/boosting/Utils/Utils.h
| D	src/libshogun/classifier/boosting/WeakLearners/AbstainableLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/AbstainableLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/BanditLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/BanditLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/BanditProductLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/BanditProductLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/BanditSingleSparseStump.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/BanditSingleSparseStump.h
| D	src/libshogun/classifier/boosting/WeakLearners/BanditSingleStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/BanditSingleStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/BanditTreeLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/BanditTreeLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/BaseLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/BaseLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/ConstantLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/ConstantLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/DirichletSingleStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/DirichletSingleStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearner2.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearner2.h
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearner3.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearner3.h
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearner4.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearner4.h
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerKNN.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerKNN.h
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerSA.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerSA.h
| D	src/libshogun/classifier/boosting/WeakLearners/FeaturewiseLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/FeaturewiseLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarFeatures.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarFeatures.h
| D	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/HaarMultiStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/HaarMultiStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/HaarSingleStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/HaarSingleStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/HierarchicalStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/HierarchicalStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/IndicatorLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/IndicatorLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/MultiStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/MultiStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/ParasiteLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/ParasiteLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/ProductLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/ProductLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerLSHTC.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerLSHTC.h
| D	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerUCT.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerUCT.h
| D	src/libshogun/classifier/boosting/WeakLearners/RandomSingleStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/RandomSingleStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/Selector.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/Selector.h
| D	src/libshogun/classifier/boosting/WeakLearners/SigmoidSingleStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/SigmoidSingleStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/SingleRegressionStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/SingleRegressionStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStump.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStump.h
| D	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearnerLSHTC.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearnerLSHTC.h
| D	src/libshogun/classifier/boosting/WeakLearners/TreeLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/TreeLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/TreeLearner2.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/TreeLearner2.h
| D	src/libshogun/classifier/boosting/WeakLearners/TreeLearner3.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/TreeLearner3.h
| D	src/libshogun/classifier/boosting/WeakLearners/TreeLearnerUCT.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/TreeLearnerUCT.h
| D	src/libshogun/classifier/boosting/WeakLearners/UCB1SingleStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/UCB1SingleStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearnerLSHTC.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearnerLSHTC.h
| D	src/libshogun/classifier/boosting/WeakLearners/UCBVHaarSingleStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/UCBVHaarSingleStumpLearner.h
|  
* commit 07233206da8400a20b0547b46792b2826995bb9c
| Author: Ziyuan Lin <ziyuang@gmail.com>
| Date:   Sat Apr 9 00:51:43 2011 +0800
| 
|     Correct a subscript error
| 
| M	src/libshogun/lib/Mathematics.h
|  
* commit d52c6de71fed6ebbde8cb69ec5641be4228456d7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 8 18:09:21 2011 +0200
| 
|     Add modular interface to Wavelet Kernel
| 
| M	src/modular/Kernel.i
|  
* commit 4ae3a56a12353874ea625107444bcd144db77ffa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 8 18:08:55 2011 +0200
| 
|     Minor reformatting, inlining and whitespace changes
| 
| M	src/libshogun/kernel/WaveletKernel.cpp
| M	src/libshogun/kernel/WaveletKernel.h
|  
* commit 9f7760cec52c28f0d35037dc056c52f718ac0ea9
| Author: Siddharth Kherada <siddharthkherada27@gmail.com>
| Date:   Fri Apr 8 21:20:09 2011 +0530
| 
|     Wavelet Kernel Function
| 
| M	src/libshogun/kernel/Kernel.h
| A	src/libshogun/kernel/WaveletKernel.cpp
| A	src/libshogun/kernel/WaveletKernel.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/GUIKernel.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit 88ee55bd1aa30f07eba9e583c75673a6b022c013
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 7 22:24:14 2011 +0200
| 
|     Minor formatting changes
| 
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/classifier/KNN.h
|  
* commit 32186a0bd10d6965e6f876f5106312d66888ec9c
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Thu Apr 7 02:30:42 2011 +0400
| 
|     Introduced protected method init_distance(CFeatures* data) for avoiding further code duplication
| 
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/classifier/KNN.h
|  
* commit e437a5f9d73f7ee753399af2115bb6e5b1f3d217
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 6 21:23:22 2011 +0200
| 
|     replace H5Gopen/create also with the *2 functions
| 
| M	src/libshogun/lib/HDF5File.cpp
|  
* commit 827a449c752abfd08d7794eb8b47f7c8e0cfe560
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 6 18:22:08 2011 +0200
| 
|     Fix type issues - thanks Lin Ziyuan for the report.
| 
| M	src/libshogun/lib/Mathematics.h
|  
* commit c0c5990ef991877c748191ae09d3859fa5b6f3da
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 6 18:13:17 2011 +0200
| 
|     drop using hdf5 1.6 based functions
|     
|     Now use *2 functions like H5Dopen2 etc
| 
| M	src/libshogun/lib/HDF5File.cpp
|  
* commit 4a002022b44bc4c1fc388eb4129ac77889cbf3a9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 6 14:02:25 2011 +0200
| 
|     ignore the cmdline binary
| 
| M	.gitignore
|  
* commit ce7a0f67a6aae86dd5869449f0bdf463624f42d6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 6 14:00:48 2011 +0200
| 
|     add a function to set rbf kernel width
|     
|     such that it can now be set not only when constructing the object
| 
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
|    
*   commit a8891a027610bb6a040355d09da83672f02aebb7
|\  Merge: 6213351 d7dab5c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Apr 6 10:02:15 2011 +0200
| | 
| |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| |   
| * commit d7dab5c27fb505a59a1570ec4cb7ca06f76b79ed
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Apr 6 07:20:40 2011 +0200
| | 
| |     make configure executable
| | 
| | M	src/configure
| |   
| * commit 159bbb4e3ca4da76859b7d9c043b3bcad7b24a14
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Apr 6 07:18:41 2011 +0200
| | 
| |     remove *.pyc - occurred twice
| | 
| | M	.gitignore
| |   
| * commit ea1505cddf1df009ce57cb92146249687cab2899
| | Author: Ameer Ayoub <ameer.ayoub@gmail.com>
| | Date:   Tue Apr 5 21:03:16 2011 -0700
| | 
| |     Fixed test_ruby(), previously would error if ruby was installed but not ruby-dev.
| | 
| | M	src/configure
| |   
* | commit 6213351cf259aab11ae6e62ef60fdee2eff1cb79
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Apr 6 10:00:39 2011 +0200
| | 
| |     make classify_NN protected; improve coding style
| |     
| |     (...by introducing a few spaces, brackets)
| | 
| | M	src/libshogun/classifier/KNN.cpp
| | M	src/libshogun/classifier/KNN.h
| |   
* | commit 729a29e1730f003c7d5758e299ec317dea0d5e80
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Apr 4 13:58:25 2011 +0400
| | 
| |     Added redirection to classify_NN(CFeatures* data) in general classify(CFeatures* data) in case of k==1
| | 
| | M	src/libshogun/classifier/KNN.cpp
| |   
* | commit 3d8ccac14e992dffaed4bf97360b489572185d46
|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|   Date:   Mon Apr 4 01:11:11 2011 +0400
|   
|       Introduced new method classify_NN() for fast classification in case of k=1
|   
|   M	src/libshogun/classifier/KNN.cpp
|   M	src/libshogun/classifier/KNN.h
|  
* commit c26d04a061c9ef15143e579ead3482f542fea2e7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 4 15:47:02 2011 +0200
| 
|     Revert "add -follow option to find"
|     
|     This reverts commit 54f4f735cf9956899de750b8fd9aeeb8bf0afd03 (was
|     		causing infinity loops upon find)
| 
| M	src/Makefile
| M	src/Makefile.template
|  
* commit 54f4f735cf9956899de750b8fd9aeeb8bf0afd03
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 4 14:06:18 2011 +0200
| 
|     add -follow option to find
|     
|     This enable symlinked sub-modules.
| 
| M	src/Makefile
| M	src/Makefile.template
|  
* commit b3d0c445a5ad78d5c0d5e32030e48b1c9b5c0748
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 4 13:50:38 2011 +0200
| 
|     define #shogun
|     
|     This way potential submodules know that they are
|     compiled within shogun.
| 
| M	src/configure
|  
* commit 4276e9b7284dcb6f308e7651da7597140e7de7ca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 4 12:14:40 2011 +0200
| 
|     Improve lua detection
|     
|     lua-config is only available on debian systems
|     (and already obsoleted). We therefore attempt to use lua config and if
|     that fails fall back to a simply -llua<ver> etc.
| 
| M	src/configure
|  
* commit 56b366cf80e28ace82c4197059bb49d1fab15a23
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 3 12:48:02 2011 +0200
| 
|     improve gitignore to exclude doxy files etc
| 
| M	.gitignore
|  
* commit 085319f959aa848771401a6d9de53233928ffef1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 3 12:41:18 2011 +0200
| 
|     Add dummy make install targets for java, lua and ruby
| 
| M	src/Makefile.template
|  
* commit b0614d454739ec38acfb3c3c543fa03388c92705
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 2 23:33:01 2011 +0200
| 
|     improve gitignore for modular interfaces
| 
| M	.gitignore
|  
* commit 4bd3981055c5e5990f8f44f9b03b8dd9249479cf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 2 17:40:42 2011 +0200
| 
|     Don't call the return value result as this clashes with swig's R
|     wrapping (calling return SEXPptr's result).
| 
| M	src/libshogun/lib/DataType.cpp
| M	src/libshogun/lib/DataType.h
|  
* commit 9842cfec0093a79306b2ebde4451d2a981ab589a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 2 17:39:21 2011 +0200
| 
|     Ignore a few more sg_* functions in modular interfaces.
|     
|     This fixes a r_modular build failure.
| 
| M	src/modular/SGBase.i
|  
* commit 0d5bae1911dda08ba44d95e671bdfa17cf287f13
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 2 14:19:46 2011 +0200
| 
|     Adjust version script to fix build failure on OSX
| 
| M	src/.version.sh
|  
* commit cbef0fb53da4466c65a47f34907e6fbc549cffaa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 30 23:03:51 2011 +0200
| 
|     Implement snappy compression support (http://code.google.com/p/snappy/).
|     
|     This code is still experimental and pending benchmarks.
| 
| M	src/configure
| M	src/libshogun/lib/Compressor.cpp
| M	src/libshogun/lib/Compressor.h
|  
* commit ad96ba33a03579457e1a9af31fd6106a3437d9e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 30 11:13:01 2011 +0200
| 
|     remove d.l.s email address from changelog
| 
| D	src/.authors
| M	src/ChangeLog
|  
* commit bbf6afa29ea2cdbac8d5eb9880fe61e30d6af384
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 29 16:28:46 2011 +0200
| 
|     add flags to support lua,ruby and java via
|     
|     ./configure --interfaces=libshogun,ruby_modular,lua_modular,java_modular
|     
|     basic autodetection should work for java and ruby paths. Autodetection
|     for lua should be perfect.
| 
| M	src/configure
|  
* commit d49afe0f7e13eacd7b26106ea0d79bee531ba69b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 29 16:27:37 2011 +0200
| 
|     update modular interface files to discard SWIG_fail for java and doxygen includes for ruby
| 
| M	src/modular/Classifier.i
| M	src/modular/Clustering.i
| M	src/modular/Distance.i
| M	src/modular/Distribution.i
| M	src/modular/Evaluation.i
| M	src/modular/Features.i
| M	src/modular/Kernel.i
| M	src/modular/Library.i
| M	src/modular/PreProc.i
| M	src/modular/Regression.i
| M	src/modular/SGBase.i
| M	src/modular/Structure.i
|  
* commit 3287f9b9f22fa5665fc37fbdd45dc16983bfa61a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 29 16:27:06 2011 +0200
| 
|     update gitignore to exclude looking for ui symlink
| 
| M	.gitignore
|  
* commit f6592019fcaf066ac240f1b92cba7eac4f22004b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 29 16:26:36 2011 +0200
| 
|     add dummy typemaps for ruby
| 
| A	src/ruby_modular/sg_print_functions.cpp
| A	src/ruby_modular/swig_typemaps.i
|  
* commit 203a7357de01dba760360e83e62754c6341a671c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 29 16:26:25 2011 +0200
| 
|     add dummy typemaps for lua
| 
| A	src/lua_modular/sg_print_functions.cpp
| A	src/lua_modular/swig_typemaps.i
|  
* commit b6a1d22d64ff0e1df48368e97e92e199af3f2c34
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 29 16:26:03 2011 +0200
| 
|     add dummy typemaps for java
| 
| A	src/java_modular/sg_print_functions.cpp
| A	src/java_modular/swig_typemaps.i
|  
* commit 36a72f5979dd81b9bcc4cec29fc40a284160844b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 28 22:33:54 2011 +0200
| 
|     polish gitignore
| 
| M	.gitignore
|  
* commit 0d4ae22c3d808e569c3876d487ec8357293195ae
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 28 15:30:49 2011 +0200
| 
|     Applying patch from D.   Lehmann upon his request on the shogun mailing list:
|     
|     ======= begin email full text quote ======
|     From: 	D.   Lehmann <.......................>
|     To: 	Sören Sonnenburg <Soeren.Sonnenburg@tu-berlin.de>, 'Klaus-Robert Müller' <Klaus-robert.mueller@tu-berlin.de>
|     Subject: 	Begin of a litigation?
|     
|     Dear Dr. Soeren Sonnenburg, Dear Dr. Prof. Mueller,
|     
|     I had committed to subversion (https://svn.tuebingen.mpg.de/shogun) at
|     03/19/11 00:54:52 the revision 5280.  With this commit I make use of
|     the German law of data privacy (Bundesdatenschutzgesetz §4 Abs. 1).
|     
|     On 03/25/11, 6 days after that commit it was published a revision of
|     Shogun at https://github.com/shogun-toolbox/shogun without my source
|     changes described above.
|     
|     Hereby I'm requesting to apply the patch attached to this mail to
|     https://github.com/shogun-toolbox/shogun until
|     
|       * Tue, 03/29/11 - 12:00 o'clock CEST
|     
|     Otherwise the action described above will be submitted to a lawyer.
|     
|     Yours respectfully
|     D.   Lehmann
|     
|     PS: This is a Class 1 signed (WoT verified) mail in SMIME format.
|     ======= end email full text quote ======
| 
| M	src/.authors
| M	src/ChangeLog
|  
* commit fbd43558c1f7381ce0440bb7be37b51d39012c5e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 28 15:27:16 2011 +0200
| 
|     Revert "my first git commit" in order to apply D.   Lehmanns patch
|     
|     This reverts commit e60583ea7a59c8885b376e71fdce8ea318bfbf8d.
| 
| A	src/.authors
|  
* commit 4e7a7c6eb752d14ddb5f52021a6f2bddaf8e5a13
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Mar 28 12:56:34 2011 +0200
| 
|     my first git commit
| 
| D	src/.authors
|  
* commit 5f960961e647591c70605f772659111a333d5334
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 27 22:55:42 2011 +0200
| 
|     fix typos as pointed out by Yin Zhu - thanks!
| 
| M	doc/pages/DeveloperTutorial.mainpage
| M	examples/undocumented/libshogun/kernel_revlin.cpp
|  
* commit ab97bca2ffe8498827ce4650016d634cb65a58e4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 27 11:14:49 2011 +0200
| 
|     Include Marina's changes that enables tests for python
| 
| M	examples/undocumented/python/classifier_gmnpsvm.py
| M	examples/undocumented/python/classifier_gpbtsvm.py
| M	examples/undocumented/python/classifier_knn.py
| M	examples/undocumented/python/classifier_lda.py
| M	examples/undocumented/python/classifier_libsvm.py
| M	examples/undocumented/python/classifier_libsvmmulticlass.py
| M	examples/undocumented/python/classifier_libsvmoneclass.py
| M	examples/undocumented/python/classifier_mpdsvm.py
| M	examples/undocumented/python/classifier_perceptron.py
| M	examples/undocumented/python/classifier_svmlight.py
| M	examples/undocumented/python/clustering_hierarchical.py
| M	examples/undocumented/python/clustering_kmeans.py
| M	examples/undocumented/python/distance_braycurtis.py
| M	examples/undocumented/python/distance_canberra.py
| M	examples/undocumented/python/distance_canberraword.py
| M	examples/undocumented/python/distance_chebyshew.py
| M	examples/undocumented/python/distance_chisquare.py
| M	examples/undocumented/python/distance_cosine.py
| M	examples/undocumented/python/distance_euclidian.py
| M	examples/undocumented/python/distance_geodesic.py
| M	examples/undocumented/python/distance_hammingword.py
| M	examples/undocumented/python/distance_jensen.py
| M	examples/undocumented/python/distance_manhatten.py
| M	examples/undocumented/python/distance_manhattenword.py
| M	examples/undocumented/python/distance_minkowski.py
| M	examples/undocumented/python/distance_tanimoto.py
| M	examples/undocumented/python/distribution_histogram.py
| M	examples/undocumented/python/distribution_hmm.py
| M	examples/undocumented/python/distribution_linearhmm.py
| M	examples/undocumented/python/kernel_chi2.py
| M	examples/undocumented/python/kernel_combined.py
| M	examples/undocumented/python/kernel_commulongstring.py
| M	examples/undocumented/python/kernel_commwordstring.py
| M	examples/undocumented/python/kernel_const.py
| M	examples/undocumented/python/kernel_diag.py
| M	examples/undocumented/python/kernel_fixeddegreestring.py
| M	examples/undocumented/python/kernel_gaussian.py
| M	examples/undocumented/python/kernel_gaussianshift.py
| M	examples/undocumented/python/kernel_linear.py
| M	examples/undocumented/python/kernel_linearbyte.py
| M	examples/undocumented/python/kernel_linearstring.py
| M	examples/undocumented/python/kernel_linearword.py
| M	examples/undocumented/python/kernel_localalignmentstring.py
| M	examples/undocumented/python/kernel_localityimprovedstring.py
| M	examples/undocumented/python/kernel_oligostring.py
| M	examples/undocumented/python/kernel_pluginestimatehistogram.py
| M	examples/undocumented/python/kernel_poly.py
| M	examples/undocumented/python/kernel_polymatchstring.py
| M	examples/undocumented/python/kernel_polymatchword.py
| M	examples/undocumented/python/kernel_salzbergstring.py
| M	examples/undocumented/python/kernel_sigmoid.py
| M	examples/undocumented/python/kernel_simplelocalityimprovedstring.py
| M	examples/undocumented/python/kernel_weightedcommwordstring.py
| M	examples/undocumented/python/kernel_weighteddegreepositionstring.py
| M	examples/undocumented/python/kernel_weighteddegreestring.py
| M	examples/undocumented/python/mkl_multiclass.py
| M	examples/undocumented/python/mkl_regression.py
| M	examples/undocumented/python/mkl_twoclass.py
| M	examples/undocumented/python/preproc_logplusone.py
| M	examples/undocumented/python/preproc_normone.py
| M	examples/undocumented/python/preproc_prunevarsubmean.py
| M	examples/undocumented/python/preproc_sortulongstring.py
| M	examples/undocumented/python/preproc_sortwordstring.py
| M	examples/undocumented/python/regression_krr.py
| M	examples/undocumented/python/regression_libsvr.py
| M	examples/undocumented/python/regression_svrlight.py
|  
* commit c96ddb6c2ca15c27cf4e507b15819b1c660e0322
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 25 21:37:33 2011 +0100
| 
|     include data as submodule
| 
| A	.gitmodules
| A	data
|  
* commit 35e492b0490f08ba93d7494b2f7940f4d6b06b4d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 25 21:32:12 2011 +0100
| 
|     removing symlinked data in favor of git submodule
| 
| D	data
|  
* commit da271d190b1f060eec02b738435dba33ef679072
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 25 21:22:43 2011 +0100
| 
|     convert svn:ignore to git
| 
| A	.gitignore
|  
* commit 3206c09611e5c5d985b5f7c3cab0fe9824db7abb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 25 20:32:20 2011 +0100
| 
|     Enable version detection when building from git
| 
| M	src/.version.sh
|  
* commit 63028445dc64a1bc0a26c86c97a7ea1fa96395f7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 25 19:30:39 2011 +0100
| 
|     change link location
| 
| M	data
|  
* commit 0e851703f591dbf8a5399f4cf9c98b61403d115a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 11 17:34:24 2011 +0000
| 
|     fix feature subset
| 
| M	src/libshogun/features/SimpleFeatures.h
|  
* commit 51710565c1fd47d1ccccbfdd956c9b97b6c4efa4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 11 17:18:48 2011 +0000
| 
|     add function to also get feature subset
| 
| M	src/libshogun/features/SimpleFeatures.h
|  
* commit de7963986291c3c2dced9143ee21a5c84af9a3de
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 11 10:35:19 2011 +0000
| 
|     add proper documentation
| 
| M	src/libshogun/features/SimpleFeatures.h
|  
* commit dc9c9fb2cdbdcdb2a7a2af66654508428c77df07
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 11 10:22:26 2011 +0000
| 
|     - put d.   lehmans email in authors and update changelog accoringly
|     - implement a subset function for simple features
| 
| M	src/.authors
| M	src/ChangeLog
| M	src/libshogun/features/SimpleFeatures.h
| M	src/modular/Features.i
|  
* commit 3750f11f866526fadd801dbcc53057fb2783d828
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 9 14:02:32 2011 +0000
| 
|     minor documentation fix
| 
| M	src/libshogun/regression/svr/LibSVR.h
|  
* commit 930278cbe1a431410b9c643ea44c9b250c85f0a8
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Fri Mar 4 17:02:37 2011 +0000
| 
|     SVM.cpp: compute_svm_primal_objective(): shortened code in bugfix
|     MKL.* : get_max_train_time() now also leads to quitting MKL optimization if exceeded, not just SVM optimization, i.e. it acts now as total trainnig time
| 
| M	src/libshogun/classifier/mkl/MKL.cpp
| M	src/libshogun/classifier/mkl/MKL.h
| M	src/libshogun/classifier/svm/SVM.cpp
|  
* commit a67d1f778200b574ebb1f691e51439d106b05a04
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Fri Mar 4 16:35:51 2011 +0000
| 
|     bugfix: CSVM::compute_primal_svm_objective() now incorporates C2, the regularizer for positive class
| 
| M	src/libshogun/classifier/svm/SVM.cpp
|  
* commit ae68d12bc2f4e627e1eec6eaa5db32dcb4a92190
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 21 19:03:24 2011 +0000
| 
|     this should fix matlab detection on osx
| 
| M	src/configure
|  
* commit 86178e055acc3054231fbca789d8d55d381c5e56
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 21 12:35:27 2011 +0000
| 
|     use ; instead of ,
| 
| M	src/configure
|  
* commit d93d943932beb637fa7035a6dd54aa777547a282
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 2 19:15:29 2011 +0000
| 
|     get kpca to work; add default constructor to tron
| 
| M	src/libshogun/classifier/svm/Tron.h
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/preproc/KernelPCACut.cpp
| M	src/libshogun/preproc/KernelPCACut.h
|  
* commit fa321f38098b1f61271e777f9abb29ea70a5e76e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 2 13:10:38 2011 +0000
| 
|     finally compiles w/o lapack
| 
| M	src/Makefile.template
| M	src/libshogun/classifier/boosting/Utils/MathUtils.cpp
| D	src/libshogun/genomic_signals/SignalModel.cpp
| D	src/libshogun/genomic_signals/SignalModel.h
| D	src/libshogun/genomic_signals/TrainPredMaster.cpp.orig
| D	src/libshogun/genomic_signals/TrainPredMaster.h
|  
* commit ac00d79ae7ebf2ba25c29ad7ed345e285e08c9a4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 2 12:41:14 2011 +0000
| 
|     remove IGNORE_CLASSLIST for these too
| 
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/lib/SerializableXmlFile.h
|  
* commit 251b8a395e36d7149c8554c84e5ed5b5095d299b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 2 12:39:14 2011 +0000
| 
|     remove IGNORE_CLASS_LIST for those
| 
| M	src/libshogun/classifier/LDA.h
| M	src/libshogun/classifier/LPBoost.h
| M	src/libshogun/classifier/LPM.h
| M	src/libshogun/classifier/SubGradientLPM.h
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| M	src/libshogun/classifier/svm/SVMLight.h
| M	src/libshogun/classifier/svm/SVMLightOneClass.h
| M	src/libshogun/classifier/svm/Tron.h
| M	src/libshogun/genomic_signals/TrainPredMaster.h
| M	src/libshogun/lib/Cplex.h
| M	src/libshogun/regression/KRR.h
| M	src/libshogun/regression/svr/SVRLight.h
|  
* commit d5e9fc0a3370992c489c59b81f15931781197185
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 2 12:37:52 2011 +0000
| 
|     let class list detect functions that require certain defines / blacklist others
| 
| M	src/libshogun/base/class_list.cpp.py
|  
* commit 52c83f1f7041f02600db9d66e71d28c64ad128e8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 2 11:24:43 2011 +0000
| 
|     ifdef HAVE_LAPACK in eigenvalue function
| 
| M	src/libshogun/lib/Mathematics.h
|  
* commit 47599ccf7e6e826e1e096f9295d24f80f9e6d3fe
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 2 10:25:08 2011 +0000
| 
|     start implementing kernel pca cut as preproc
| 
| A	src/libshogun/preproc/KernelPCACut.cpp
| A	src/libshogun/preproc/KernelPCACut.h
| M	src/modular/PreProc.i
|  
* commit f966c30a9b728240dc0feda020898168f09756dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 2 10:23:52 2011 +0000
| 
|     drop shell script to generate class list and replace it with a (slightly more correct) python variant not using regexp magic
| 
| M	src/Makefile.template
| M	src/configure
| A	src/libshogun/base/class_list.cpp.py
| D	src/libshogun/base/class_list.cpp.sh
| M	src/libshogun/base/class_list.cpp.templ
|  
* commit 6f5ccf60c6fc38d317f16d144fc91d287f483311
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 2 09:38:58 2011 +0000
| 
|     move compute eigenvectors / centering of kernel matrix to lib/Mathematics.
| 
| M	src/libshogun/lib/Mathematics.h
|  
* commit 1a8d754cfb09d13d488ca437565ff417733ff701
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 1 15:09:26 2011 +0000
| 
|     do apply for get/set_labels also in classifier
| 
| M	src/modular/Classifier.i
|  
* commit 4ac310c3f6ec87c8e6ad8495091375673a53727b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 1 15:08:11 2011 +0000
| 
|     add the demo from europython talk to examples
| 
| A	examples/undocumented/python_modular/graphical/interactive_svm_demo.py
|  
* commit 5d1d65fea6ae037dd93ce94782067025e2da3202
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 1 14:46:50 2011 +0000
| 
|     really disable gcc opt flags
| 
| M	src/configure
|  
* commit 57935c18ff21d1966c1b0235b4cb3b7170161920
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 1 13:22:07 2011 +0000
| 
|     remove the void(tm)
| 
| M	src/libshogun/features/SparsePolyFeatures.cpp
| M	src/libshogun/features/SparsePolyFeatures.h
|  
* commit 932410a1e6338ecd088200a78b1f7802f667f30a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 1 13:21:32 2011 +0000
| 
|     in debug mode disable optimization
| 
| M	src/configure
|  
* commit 949c3c0f1617ee596f26242dea4935777abfa72c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 27 08:21:24 2011 +0000
| 
|     PCACut preproc now enables access to eigenvalues/eigenvectors of covariance matrix
| 
| M	src/libshogun/preproc/PCACut.cpp
| M	src/libshogun/preproc/PCACut.h
|  
* commit 1eb7cfd939d4279fe694509dcbe984bc6f35fe0f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 20 16:40:57 2011 +0000
| 
|     rename CKernelMachine to KernelMachine
| 
| M	src/modular/Classifier.i
|  
* commit 57f52104d94f4961e43bd25be786cb33489d6983
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 20 08:00:34 2011 +0000
| 
|     impl. init_optimization based on kernel machine
| 
| M	src/libshogun/kernel/LinearKernel.cpp
| M	src/libshogun/kernel/LinearKernel.h
|  
* commit 176aefd826d9da67e7fc338cd48df59ed539a3f8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 20 07:28:59 2011 +0000
| 
|     improve error messages when thread creation fails
| 
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
|  
* commit 6e293369c21492b57d7a9db591556c9611847f6b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 17 07:10:19 2011 +0000
| 
|     name the failing thread
| 
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
|  
* commit 088b882bbe63654f7c3ea2a7fd3daacd2669e2f1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 17 06:55:59 2011 +0000
| 
|     error handling with multiple threads and parallel get_kernel_matrix
| 
| M	src/libshogun/kernel/Kernel.h
|  
* commit 30a62f8d9a7eda75d114f1d8ad1e32222a57b080
| Author: Vipin T Sreedharan <vipin.ts@tuebingen.mpg.de>
| Date:   Fri Jan 14 15:30:50 2011 +0000
| 
|     Added non-nucleotide converter function in main code.
| 
| M	applications/easysvm/esvm/experiment.py
| M	applications/easysvm/esvm/mldata.py
| M	applications/easysvm/esvm/mldata_arff.py
|  
* commit 496a4244ecd614ae972e15c04b16cb8d3ef9f202
| Author: Vipin T Sreedharan <vipin.ts@tuebingen.mpg.de>
| Date:   Fri Jan 14 15:30:01 2011 +0000
| 
|     added non-nucleotied converter
| 
| M	applications/easysvm/galaxy/FastaGen.xml
| M	applications/easysvm/galaxy/MotifGen.xml
| M	applications/easysvm/galaxy/easysvm.xml
| M	applications/easysvm/galaxy/eval.xml
| M	applications/easysvm/galaxy/modelsel.xml
| M	applications/easysvm/galaxy/poim.xml
|  
* commit dec40aa6d8c653fc70884d385b6ae967818b863e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 14 11:16:01 2011 +0000
| 
|     fix another svmlight build failure with linear da svm
| 
| M	src/modular/Classifier.i
|  
* commit 9056e643f3b36321e51bfc32ac001ba4391741bc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 14 10:43:43 2011 +0000
| 
|     fix another compile failure without svmlight
| 
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.h
|  
* commit 3f6ec456c3f0a7637cbefb060ae5ca304796aa66
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 14 08:41:04 2011 +0000
| 
|     improve configure help
| 
| M	src/configure
|  
* commit 989d93859c79c365b7009b9a6c01ebfc2ca16afd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 14 08:40:35 2011 +0000
| 
|     fix compilation when SVMLIGHT is not available
| 
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
|  
* commit cc7dbc2d4338d2ab46c0c02febbf1e5c44359929
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 11 16:35:37 2011 +0000
| 
|     fix a memory leak occurring on classify()
| 
| M	src/modular/Classifier.i
|  
* commit fea41e240ab3ea13a053f8f1c3b665e3e3d8b892
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 11 16:01:29 2011 +0000
| 
|     fix a minor memory leak
| 
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
|  
* commit 14eae773c8c8900f96026a9524d0256134a9765f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 9 18:56:10 2011 +0000
| 
|     inlcude labels in classifier (since e.g. one class svm's return such objects. thanks Nedim Srndic for the report.
| 
| M	src/modular/Classifier.i
|  
* commit 4d2698ff39fb551698f3b0ad8777934ee3104b57
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 7 17:35:58 2011 +0000
| 
|     update copyright to 2011
| 
| M	src/NEWS
| M	src/libshogun/base/Version.h
|  
* commit dcdea587354f212661107de2fbe6fd77e577cbe6
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Mon Jan 3 17:44:08 2011 +0000
| 
|     added incode example how to use set_randomcoefficients(...)
| 
| M	examples/undocumented/libshogun/preproc_randomfouriergauss.cpp
|  
* commit f987768422467fa879be37d072b1880c42da61d3
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Mon Jan 3 16:24:47 2011 +0000
| 
|     made class RandomFourierGaussPreproc serializable
| 
| M	examples/undocumented/libshogun/preproc_randomfouriergauss.cpp
| M	src/libshogun/preproc/RandomFourierGaussPreproc.cpp
| M	src/libshogun/preproc/RandomFourierGaussPreproc.h
|  
* commit 40bae68cc02de54147f7ca2011d58380ee3befb7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 3 12:37:59 2011 +0000
| 
|     integrate Alex's RandomFourierGaussPreproc in the modular interfaces
| 
| M	src/modular/PreProc.i
|  
* commit 4ada773b28ff097436b14563fe65d1a367d8a51d
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Thu Dec 30 23:07:59 2010 +0000
| 
|     added example for libshogun
| 
| A	examples/undocumented/libshogun/preproc_randomfouriergauss.cpp
| M	src/libshogun/preproc/RandomFourierGaussPreproc.cpp
|  
* commit 0d767edcc6cfad6070d9f689556a64fdd17c4510
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Thu Dec 30 22:33:18 2010 +0000
| 
|     implemented Random Fourier Gauss Preprocessor
| 
| M	src/libshogun/preproc/PreProc.h
| A	src/libshogun/preproc/RandomFourierGaussPreproc.cpp
| A	src/libshogun/preproc/RandomFourierGaussPreproc.h
|  
* commit 7a2d7fcc05c23ccc006caca4f6ff4a9fd4ad1394
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Dec 12 16:57:44 2010 +0000
| 
|     make some weak learners visible from the python side
| 
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/boosting/WeakLearners/BanditProductLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/BanditSingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/BanditTreeLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/BaseLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/BaseLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/ConstantLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/DirichletSingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner2.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner3.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner4.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerKNN.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerSA.h
| M	src/libshogun/classifier/boosting/WeakLearners/IndicatorLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/MultiStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/ParasiteLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerLSHTC.h
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerUCT.h
| M	src/libshogun/classifier/boosting/WeakLearners/RandomSingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/Selector.h
| M	src/libshogun/classifier/boosting/WeakLearners/SingleRegressionStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStump.h
| M	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearnerLSHTC.h
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearner2.h
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearner3.h
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearnerUCT.h
| M	src/libshogun/classifier/boosting/WeakLearners/UCB1SingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearnerLSHTC.h
| M	src/modular/Classifier.i
|  
* commit be26ba8e5cfb6ccd9692b7cb6a78ffbaa8a38cb8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 11 13:32:01 2010 +0000
| 
|     make all includpaths relative to libshogun/
| 
| M	src/libshogun/classifier/boosting/Bandits/Exp3.h
| M	src/libshogun/classifier/boosting/Bandits/Exp3G.h
| M	src/libshogun/classifier/boosting/Bandits/Exp3G2.h
| M	src/libshogun/classifier/boosting/Bandits/Exp3P.h
| M	src/libshogun/classifier/boosting/Bandits/Random.h
| M	src/libshogun/classifier/boosting/Bandits/UCBK.h
| M	src/libshogun/classifier/boosting/Bandits/UCBKRandomized.h
| M	src/libshogun/classifier/boosting/Bandits/UCBKV.h
| M	src/libshogun/classifier/boosting/BanditsLS/Exp3GLS.h
| M	src/libshogun/classifier/boosting/BanditsLS/Exp3LS.h
| M	src/libshogun/classifier/boosting/BanditsLS/UCTLS.h
| M	src/libshogun/classifier/boosting/IO/ArffParser.h
| M	src/libshogun/classifier/boosting/IO/ArffParserBzip2.h
| M	src/libshogun/classifier/boosting/IO/GenericParser.h
| M	src/libshogun/classifier/boosting/IO/InputData.h
| M	src/libshogun/classifier/boosting/IO/LSHTCParser.h
| M	src/libshogun/classifier/boosting/IO/ParasiteData.h
| M	src/libshogun/classifier/boosting/IO/RawData.h
| M	src/libshogun/classifier/boosting/IO/SVMLightParser.h
| M	src/libshogun/classifier/boosting/Kmeans/KCtree.h
| M	src/libshogun/classifier/boosting/Kmeans/KCutil.h
| M	src/libshogun/classifier/boosting/Kmeans/KMcenters.h
| M	src/libshogun/classifier/boosting/Kmeans/KMdata.h
| M	src/libshogun/classifier/boosting/Kmeans/KMeans.h
| M	src/libshogun/classifier/boosting/Kmeans/KMfilterCenters.h
| M	src/libshogun/classifier/boosting/Kmeans/KMlocal.h
| M	src/libshogun/classifier/boosting/Kmeans/KMrand.h
| M	src/libshogun/classifier/boosting/Kmeans/KMterm.h
| M	src/libshogun/classifier/boosting/Utils/Args.h
| M	src/libshogun/classifier/boosting/Utils/ClassHierarchy.h
| M	src/libshogun/classifier/boosting/WeakLearners/BanditProductLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner2.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner3.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner4.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerKNN.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerSA.h
| M	src/libshogun/classifier/boosting/WeakLearners/IndicatorLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/ParasiteLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerLSHTC.h
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerUCT.h
| M	src/libshogun/classifier/boosting/WeakLearners/Selector.h
| M	src/libshogun/classifier/boosting/WeakLearners/SigmoidSingleStumpLearner.h
|  
* commit dc1262e24ad1f06ebf68c4655c7971bd3eddc7d5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 11 13:31:11 2010 +0000
| 
|     add multiboost application
| 
| A	applications/multiboost/Makefile
| A	applications/multiboost/multiboost.cpp
|  
* commit bfdcf12a3e8f27bd3cf90143ed8ee5250e2e9b98
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 11 13:03:47 2010 +0000
| 
|     - change namespace Multiboost into namespace shogun
|     - limit newobject classify to classifiers
|     - make AdaBoostMHClassifier known from modular interfaces
| 
| M	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithm.cpp
| M	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithm.h
| M	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithmLSHTC.cpp
| M	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithmLSHTC.h
| M	src/libshogun/classifier/boosting/Algorithms/RegressionStumpAlgorithm.h
| M	src/libshogun/classifier/boosting/Algorithms/SparseStumpAlgorithm.h
| M	src/libshogun/classifier/boosting/Algorithms/StumpAlgorithm.h
| M	src/libshogun/classifier/boosting/Algorithms/StumpAlgorithmLSHTC.h
| M	src/libshogun/classifier/boosting/Bandits/Exp3.cpp
| M	src/libshogun/classifier/boosting/Bandits/Exp3.h
| M	src/libshogun/classifier/boosting/Bandits/Exp3G.cpp
| M	src/libshogun/classifier/boosting/Bandits/Exp3G.h
| M	src/libshogun/classifier/boosting/Bandits/Exp3G2.cpp
| M	src/libshogun/classifier/boosting/Bandits/Exp3G2.h
| M	src/libshogun/classifier/boosting/Bandits/Exp3P.cpp
| M	src/libshogun/classifier/boosting/Bandits/Exp3P.h
| M	src/libshogun/classifier/boosting/Bandits/GenericBanditAlgorithm.h
| M	src/libshogun/classifier/boosting/Bandits/Random.cpp
| M	src/libshogun/classifier/boosting/Bandits/Random.h
| M	src/libshogun/classifier/boosting/Bandits/UCBK.cpp
| M	src/libshogun/classifier/boosting/Bandits/UCBK.h
| M	src/libshogun/classifier/boosting/Bandits/UCBKRandomized.cpp
| M	src/libshogun/classifier/boosting/Bandits/UCBKRandomized.h
| M	src/libshogun/classifier/boosting/Bandits/UCBKV.cpp
| M	src/libshogun/classifier/boosting/Bandits/UCBKV.h
| M	src/libshogun/classifier/boosting/BanditsLS/Exp3GLS.cpp
| M	src/libshogun/classifier/boosting/BanditsLS/Exp3GLS.h
| M	src/libshogun/classifier/boosting/BanditsLS/Exp3LS.cpp
| M	src/libshogun/classifier/boosting/BanditsLS/Exp3LS.h
| M	src/libshogun/classifier/boosting/BanditsLS/GenericBanditAlgorithmLS.h
| M	src/libshogun/classifier/boosting/BanditsLS/UCTLS.cpp
| M	src/libshogun/classifier/boosting/BanditsLS/UCTLS.h
| M	src/libshogun/classifier/boosting/Classifiers/ABMHClassifierYahoo.cpp
| M	src/libshogun/classifier/boosting/Classifiers/ABMHClassifierYahoo.h
| M	src/libshogun/classifier/boosting/Classifiers/AdaBoostMHClassifier.cpp
| M	src/libshogun/classifier/boosting/Classifiers/AdaBoostMHClassifier.h
| M	src/libshogun/classifier/boosting/Classifiers/BrownBoostClassifier.cpp
| M	src/libshogun/classifier/boosting/Classifiers/BrownBoostClassifier.h
| M	src/libshogun/classifier/boosting/Classifiers/ExampleResults.cpp
| M	src/libshogun/classifier/boosting/Classifiers/ExampleResults.h
| M	src/libshogun/classifier/boosting/Classifiers/FilterBoostClassifier.cpp
| M	src/libshogun/classifier/boosting/Classifiers/FilterBoostClassifier.h
| M	src/libshogun/classifier/boosting/Classifiers/LogitBoostClassifier.cpp
| M	src/libshogun/classifier/boosting/Classifiers/LogitBoostClassifier.h
| M	src/libshogun/classifier/boosting/IO/ADTreeData.cpp
| M	src/libshogun/classifier/boosting/IO/ADTreeData.h
| M	src/libshogun/classifier/boosting/IO/ArffParser.cpp
| M	src/libshogun/classifier/boosting/IO/ArffParser.h
| M	src/libshogun/classifier/boosting/IO/ArffParserBzip2.cpp
| M	src/libshogun/classifier/boosting/IO/ArffParserBzip2.h
| M	src/libshogun/classifier/boosting/IO/EncodeData.cpp
| M	src/libshogun/classifier/boosting/IO/EncodeData.h
| M	src/libshogun/classifier/boosting/IO/ExtendableData.cpp
| M	src/libshogun/classifier/boosting/IO/ExtendableData.h
| M	src/libshogun/classifier/boosting/IO/GenericParser.h
| M	src/libshogun/classifier/boosting/IO/HaarData.cpp
| M	src/libshogun/classifier/boosting/IO/HaarData.h
| M	src/libshogun/classifier/boosting/IO/InputData.cpp
| M	src/libshogun/classifier/boosting/IO/InputData.h
| M	src/libshogun/classifier/boosting/IO/LSHTCParser.cpp
| M	src/libshogun/classifier/boosting/IO/LSHTCParser.h
| M	src/libshogun/classifier/boosting/IO/NameMap.cpp
| M	src/libshogun/classifier/boosting/IO/NameMap.h
| M	src/libshogun/classifier/boosting/IO/OutputInfo.cpp
| M	src/libshogun/classifier/boosting/IO/OutputInfo.h
| M	src/libshogun/classifier/boosting/IO/ParasiteData.h
| M	src/libshogun/classifier/boosting/IO/RawData.cpp
| M	src/libshogun/classifier/boosting/IO/RawData.h
| M	src/libshogun/classifier/boosting/IO/SVMLightParser.cpp
| M	src/libshogun/classifier/boosting/IO/SVMLightParser.h
| M	src/libshogun/classifier/boosting/IO/Serialization.cpp
| M	src/libshogun/classifier/boosting/IO/Serialization.h
| M	src/libshogun/classifier/boosting/IO/SortedData.cpp
| M	src/libshogun/classifier/boosting/IO/SortedData.h
| M	src/libshogun/classifier/boosting/IO/TxtParser.cpp
| M	src/libshogun/classifier/boosting/IO/TxtParser.h
| M	src/libshogun/classifier/boosting/Others/Example.h
| M	src/libshogun/classifier/boosting/Others/Rates.h
| M	src/libshogun/classifier/boosting/StrongLearners/ABMHLearnerYahoo.cpp
| M	src/libshogun/classifier/boosting/StrongLearners/ABMHLearnerYahoo.h
| M	src/libshogun/classifier/boosting/StrongLearners/ADTreeLearner.cpp
| M	src/libshogun/classifier/boosting/StrongLearners/ADTreeLearner.h
| M	src/libshogun/classifier/boosting/StrongLearners/AdaBoostMHLearner.cpp
| M	src/libshogun/classifier/boosting/StrongLearners/AdaBoostMHLearner.h
| M	src/libshogun/classifier/boosting/StrongLearners/BrownBoostLearner.cpp
| M	src/libshogun/classifier/boosting/StrongLearners/BrownBoostLearner.h
| M	src/libshogun/classifier/boosting/StrongLearners/FilterBoostLearner.cpp
| M	src/libshogun/classifier/boosting/StrongLearners/FilterBoostLearner.h
| M	src/libshogun/classifier/boosting/StrongLearners/GenericStrongLearner.h
| M	src/libshogun/classifier/boosting/StrongLearners/LogitBoostLearner.cpp
| M	src/libshogun/classifier/boosting/StrongLearners/LogitBoostLearner.h
| M	src/libshogun/classifier/boosting/Utils/Args.h
| M	src/libshogun/classifier/boosting/Utils/ClassHierarchy.cpp
| M	src/libshogun/classifier/boosting/Utils/ClassHierarchy.h
| M	src/libshogun/classifier/boosting/Utils/UCTutils.cpp
| M	src/libshogun/classifier/boosting/Utils/UCTutils.h
| M	src/libshogun/classifier/boosting/WeakLearners/AbstainableLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/AbstainableLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/BanditLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/BanditLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/BanditProductLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/BanditProductLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/BanditSingleSparseStump.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/BanditSingleSparseStump.h
| M	src/libshogun/classifier/boosting/WeakLearners/BanditSingleStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/BanditSingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/BanditTreeLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/BanditTreeLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/BaseLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/BaseLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/ConstantLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/ConstantLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/DirichletSingleStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/DirichletSingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner2.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner2.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner3.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner3.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner4.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner4.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerKNN.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerKNN.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerSA.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerSA.h
| M	src/libshogun/classifier/boosting/WeakLearners/FeaturewiseLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/FeaturewiseLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarFeatures.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarFeatures.h
| M	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/HaarMultiStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/HaarMultiStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/HaarSingleStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/HaarSingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/HierarchicalStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/HierarchicalStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/IndicatorLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/IndicatorLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/MultiStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/MultiStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/ParasiteLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/ParasiteLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerLSHTC.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerLSHTC.h
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerUCT.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerUCT.h
| M	src/libshogun/classifier/boosting/WeakLearners/RandomSingleStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/RandomSingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/Selector.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/Selector.h
| M	src/libshogun/classifier/boosting/WeakLearners/SigmoidSingleStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/SigmoidSingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/SingleRegressionStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/SingleRegressionStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStump.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStump.h
| M	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearnerLSHTC.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearnerLSHTC.h
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearner2.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearner2.h
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearner3.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearner3.h
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearnerUCT.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearnerUCT.h
| M	src/libshogun/classifier/boosting/WeakLearners/UCB1SingleStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/UCB1SingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearnerLSHTC.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearnerLSHTC.h
| M	src/libshogun/classifier/boosting/WeakLearners/UCBVHaarSingleStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/UCBVHaarSingleStumpLearner.h
| M	src/modular/Classifier.i
|  
* commit 2fdccd642ea0dd98f4c4457062a7eb0dfd0f0729
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 11 06:45:04 2010 +0000
| 
|     derive a few strong learners from SGObject
| 
| M	src/libshogun/classifier/boosting/StrongLearners/AdaBoostMHLearner.h
| M	src/libshogun/classifier/boosting/StrongLearners/FilterBoostLearner.h
| M	src/libshogun/classifier/boosting/StrongLearners/GenericStrongLearner.h
|  
* commit 0f4f35dea207fbd1736dd2fe018b11c7fa2b66ca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 11 06:28:30 2010 +0000
| 
|     experimental merge of multiboost
| 
| M	src/NEWS
| A	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithm.cpp
| A	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithm.h
| A	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithmLSHTC.cpp
| A	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithmLSHTC.h
| A	src/libshogun/classifier/boosting/Algorithms/RegressionStumpAlgorithm.h
| A	src/libshogun/classifier/boosting/Algorithms/SparseStumpAlgorithm.h
| A	src/libshogun/classifier/boosting/Algorithms/StumpAlgorithm.h
| A	src/libshogun/classifier/boosting/Algorithms/StumpAlgorithmLSHTC.h
| A	src/libshogun/classifier/boosting/Bandits/Exp3.cpp
| A	src/libshogun/classifier/boosting/Bandits/Exp3.h
| A	src/libshogun/classifier/boosting/Bandits/Exp3G.cpp
| A	src/libshogun/classifier/boosting/Bandits/Exp3G.h
| A	src/libshogun/classifier/boosting/Bandits/Exp3G2.cpp
| A	src/libshogun/classifier/boosting/Bandits/Exp3G2.h
| A	src/libshogun/classifier/boosting/Bandits/Exp3P.cpp
| A	src/libshogun/classifier/boosting/Bandits/Exp3P.h
| A	src/libshogun/classifier/boosting/Bandits/GenericBanditAlgorithm.cpp
| A	src/libshogun/classifier/boosting/Bandits/GenericBanditAlgorithm.h
| A	src/libshogun/classifier/boosting/Bandits/Random.cpp
| A	src/libshogun/classifier/boosting/Bandits/Random.h
| A	src/libshogun/classifier/boosting/Bandits/UCBK.cpp
| A	src/libshogun/classifier/boosting/Bandits/UCBK.h
| A	src/libshogun/classifier/boosting/Bandits/UCBKRandomized.cpp
| A	src/libshogun/classifier/boosting/Bandits/UCBKRandomized.h
| A	src/libshogun/classifier/boosting/Bandits/UCBKV.cpp
| A	src/libshogun/classifier/boosting/Bandits/UCBKV.h
| A	src/libshogun/classifier/boosting/BanditsLS/Exp3GLS.cpp
| A	src/libshogun/classifier/boosting/BanditsLS/Exp3GLS.h
| A	src/libshogun/classifier/boosting/BanditsLS/Exp3LS.cpp
| A	src/libshogun/classifier/boosting/BanditsLS/Exp3LS.h
| A	src/libshogun/classifier/boosting/BanditsLS/GenericBanditAlgorithmLS.cpp
| A	src/libshogun/classifier/boosting/BanditsLS/GenericBanditAlgorithmLS.h
| A	src/libshogun/classifier/boosting/BanditsLS/UCTLS.cpp
| A	src/libshogun/classifier/boosting/BanditsLS/UCTLS.h
| A	src/libshogun/classifier/boosting/Bzip2/Bzip2Wrapper.cpp
| A	src/libshogun/classifier/boosting/Bzip2/Bzip2Wrapper.h
| A	src/libshogun/classifier/boosting/Bzip2/blocksort.c
| A	src/libshogun/classifier/boosting/Bzip2/bzip2.c
| A	src/libshogun/classifier/boosting/Bzip2/bzip2recover.c
| A	src/libshogun/classifier/boosting/Bzip2/bzlib.c
| A	src/libshogun/classifier/boosting/Bzip2/bzlib.h
| A	src/libshogun/classifier/boosting/Bzip2/bzlib_private.h
| A	src/libshogun/classifier/boosting/Bzip2/compress.c
| A	src/libshogun/classifier/boosting/Bzip2/crctable.c
| A	src/libshogun/classifier/boosting/Bzip2/decompress.c
| A	src/libshogun/classifier/boosting/Bzip2/dlltest.c
| A	src/libshogun/classifier/boosting/Bzip2/huffman.c
| A	src/libshogun/classifier/boosting/Bzip2/mk251.c
| A	src/libshogun/classifier/boosting/Bzip2/randtable.c
| A	src/libshogun/classifier/boosting/Bzip2/spewG.c
| A	src/libshogun/classifier/boosting/Bzip2/unzcrash.c
| A	src/libshogun/classifier/boosting/Classifiers/ABMHClassifierYahoo.cpp
| A	src/libshogun/classifier/boosting/Classifiers/ABMHClassifierYahoo.h
| A	src/libshogun/classifier/boosting/Classifiers/AdaBoostMHClassifier.cpp
| A	src/libshogun/classifier/boosting/Classifiers/AdaBoostMHClassifier.h
| A	src/libshogun/classifier/boosting/Classifiers/BrownBoostClassifier.cpp
| A	src/libshogun/classifier/boosting/Classifiers/BrownBoostClassifier.h
| A	src/libshogun/classifier/boosting/Classifiers/ExampleResults.cpp
| A	src/libshogun/classifier/boosting/Classifiers/ExampleResults.h
| A	src/libshogun/classifier/boosting/Classifiers/FilterBoostClassifier.cpp
| A	src/libshogun/classifier/boosting/Classifiers/FilterBoostClassifier.h
| A	src/libshogun/classifier/boosting/Classifiers/LogitBoostClassifier.cpp
| A	src/libshogun/classifier/boosting/Classifiers/LogitBoostClassifier.h
| A	src/libshogun/classifier/boosting/Defaults.h
| A	src/libshogun/classifier/boosting/IO/ADTreeData.cpp
| A	src/libshogun/classifier/boosting/IO/ADTreeData.h
| A	src/libshogun/classifier/boosting/IO/ArffParser.cpp
| A	src/libshogun/classifier/boosting/IO/ArffParser.h
| A	src/libshogun/classifier/boosting/IO/ArffParserBzip2.cpp
| A	src/libshogun/classifier/boosting/IO/ArffParserBzip2.h
| A	src/libshogun/classifier/boosting/IO/EncodeData.cpp
| A	src/libshogun/classifier/boosting/IO/EncodeData.h
| A	src/libshogun/classifier/boosting/IO/ExtendableData.cpp
| A	src/libshogun/classifier/boosting/IO/ExtendableData.h
| A	src/libshogun/classifier/boosting/IO/GenericParser.h
| A	src/libshogun/classifier/boosting/IO/HaarData.cpp
| A	src/libshogun/classifier/boosting/IO/HaarData.h
| A	src/libshogun/classifier/boosting/IO/InputData.cpp
| A	src/libshogun/classifier/boosting/IO/InputData.h
| A	src/libshogun/classifier/boosting/IO/LSHTCParser.cpp
| A	src/libshogun/classifier/boosting/IO/LSHTCParser.h
| A	src/libshogun/classifier/boosting/IO/NameMap.cpp
| A	src/libshogun/classifier/boosting/IO/NameMap.h
| A	src/libshogun/classifier/boosting/IO/OutputInfo.cpp
| A	src/libshogun/classifier/boosting/IO/OutputInfo.h
| A	src/libshogun/classifier/boosting/IO/ParasiteData.h
| A	src/libshogun/classifier/boosting/IO/RawData.cpp
| A	src/libshogun/classifier/boosting/IO/RawData.h
| A	src/libshogun/classifier/boosting/IO/SVMLightParser.cpp
| A	src/libshogun/classifier/boosting/IO/SVMLightParser.h
| A	src/libshogun/classifier/boosting/IO/Serialization.cpp
| A	src/libshogun/classifier/boosting/IO/Serialization.h
| A	src/libshogun/classifier/boosting/IO/SortedData.cpp
| A	src/libshogun/classifier/boosting/IO/SortedData.h
| A	src/libshogun/classifier/boosting/IO/TxtParser.cpp
| A	src/libshogun/classifier/boosting/IO/TxtParser.h
| A	src/libshogun/classifier/boosting/Kmeans/KCtree.cpp
| A	src/libshogun/classifier/boosting/Kmeans/KCtree.h
| A	src/libshogun/classifier/boosting/Kmeans/KCutil.cpp
| A	src/libshogun/classifier/boosting/Kmeans/KCutil.h
| A	src/libshogun/classifier/boosting/Kmeans/KM_ANN.cpp
| A	src/libshogun/classifier/boosting/Kmeans/KM_ANN.h
| A	src/libshogun/classifier/boosting/Kmeans/KMcenters.cpp
| A	src/libshogun/classifier/boosting/Kmeans/KMcenters.h
| A	src/libshogun/classifier/boosting/Kmeans/KMdata.cpp
| A	src/libshogun/classifier/boosting/Kmeans/KMdata.h
| A	src/libshogun/classifier/boosting/Kmeans/KMeans.cpp
| A	src/libshogun/classifier/boosting/Kmeans/KMeans.h
| A	src/libshogun/classifier/boosting/Kmeans/KMfilterCenters.cpp
| A	src/libshogun/classifier/boosting/Kmeans/KMfilterCenters.h
| A	src/libshogun/classifier/boosting/Kmeans/KMlocal.cpp
| A	src/libshogun/classifier/boosting/Kmeans/KMlocal.h
| A	src/libshogun/classifier/boosting/Kmeans/KMrand.cpp
| A	src/libshogun/classifier/boosting/Kmeans/KMrand.h
| A	src/libshogun/classifier/boosting/Kmeans/KMterm.cpp
| A	src/libshogun/classifier/boosting/Kmeans/KMterm.h
| A	src/libshogun/classifier/boosting/Kmeans/files
| A	src/libshogun/classifier/boosting/Others/Example.h
| A	src/libshogun/classifier/boosting/Others/Rates.h
| A	src/libshogun/classifier/boosting/StrongLearners/ABMHLearnerYahoo.cpp
| A	src/libshogun/classifier/boosting/StrongLearners/ABMHLearnerYahoo.h
| A	src/libshogun/classifier/boosting/StrongLearners/ADTreeLearner.cpp
| A	src/libshogun/classifier/boosting/StrongLearners/ADTreeLearner.h
| A	src/libshogun/classifier/boosting/StrongLearners/AdaBoostMHLearner.cpp
| A	src/libshogun/classifier/boosting/StrongLearners/AdaBoostMHLearner.h
| A	src/libshogun/classifier/boosting/StrongLearners/BrownBoostLearner.cpp
| A	src/libshogun/classifier/boosting/StrongLearners/BrownBoostLearner.h
| A	src/libshogun/classifier/boosting/StrongLearners/FilterBoostLearner.cpp
| A	src/libshogun/classifier/boosting/StrongLearners/FilterBoostLearner.h
| A	src/libshogun/classifier/boosting/StrongLearners/GenericStrongLearner.h
| A	src/libshogun/classifier/boosting/StrongLearners/LogitBoostLearner.cpp
| A	src/libshogun/classifier/boosting/StrongLearners/LogitBoostLearner.h
| A	src/libshogun/classifier/boosting/Utils/Args.cpp
| A	src/libshogun/classifier/boosting/Utils/Args.h
| A	src/libshogun/classifier/boosting/Utils/ClassHierarchy.cpp
| A	src/libshogun/classifier/boosting/Utils/ClassHierarchy.h
| A	src/libshogun/classifier/boosting/Utils/MathUtils.cpp
| A	src/libshogun/classifier/boosting/Utils/MathematicalTools.h
| A	src/libshogun/classifier/boosting/Utils/StreamTokenizer.h
| A	src/libshogun/classifier/boosting/Utils/UCTutils.cpp
| A	src/libshogun/classifier/boosting/Utils/UCTutils.h
| A	src/libshogun/classifier/boosting/Utils/Utils.cpp
| A	src/libshogun/classifier/boosting/Utils/Utils.h
| A	src/libshogun/classifier/boosting/WeakLearners/AbstainableLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/AbstainableLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/BanditLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/BanditLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/BanditProductLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/BanditProductLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/BanditSingleSparseStump.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/BanditSingleSparseStump.h
| A	src/libshogun/classifier/boosting/WeakLearners/BanditSingleStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/BanditSingleStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/BanditTreeLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/BanditTreeLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/BaseLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/BaseLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/ConstantLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/ConstantLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/DirichletSingleStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/DirichletSingleStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearner2.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearner2.h
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearner3.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearner3.h
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearner4.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearner4.h
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerKNN.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerKNN.h
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerSA.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerSA.h
| A	src/libshogun/classifier/boosting/WeakLearners/FeaturewiseLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/FeaturewiseLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarFeatures.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarFeatures.h
| A	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/HaarMultiStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/HaarMultiStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/HaarSingleStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/HaarSingleStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/HierarchicalStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/HierarchicalStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/IndicatorLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/IndicatorLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/MultiStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/MultiStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/ParasiteLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/ParasiteLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/ProductLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/ProductLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerLSHTC.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerLSHTC.h
| A	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerUCT.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerUCT.h
| A	src/libshogun/classifier/boosting/WeakLearners/RandomSingleStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/RandomSingleStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/Selector.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/Selector.h
| A	src/libshogun/classifier/boosting/WeakLearners/SigmoidSingleStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/SigmoidSingleStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/SingleRegressionStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/SingleRegressionStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStump.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStump.h
| A	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearnerLSHTC.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearnerLSHTC.h
| A	src/libshogun/classifier/boosting/WeakLearners/TreeLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/TreeLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/TreeLearner2.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/TreeLearner2.h
| A	src/libshogun/classifier/boosting/WeakLearners/TreeLearner3.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/TreeLearner3.h
| A	src/libshogun/classifier/boosting/WeakLearners/TreeLearnerUCT.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/TreeLearnerUCT.h
| A	src/libshogun/classifier/boosting/WeakLearners/UCB1SingleStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/UCB1SingleStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearnerLSHTC.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearnerLSHTC.h
| A	src/libshogun/classifier/boosting/WeakLearners/UCBVHaarSingleStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/UCBVHaarSingleStumpLearner.h
|  
* commit 723059d9bd29eb79960200e671e9a5766f7bf49f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 11 06:07:47 2010 +0000
| 
|     use /bin/bash instead of /bin/sh
| 
| M	src/libshogun/base/class_list.cpp.sh
|  
* commit e2a98b488b7bbc76e844b10cb365bbe46395b608
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 8 17:03:32 2010 +0000
| 
|     mention optimal parameter setting
| 
| M	applications/ocr/train
|  
* commit aa25b6b91b6c93b83497421bb7dc806404a3126e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 8 17:02:50 2010 +0000
| 
|     update model to new format
| 
| M	applications/ocr/data/ocr.svm.gz
|  
* commit 722aa2101fb2653ce620fff4ecae09c8ca5ba7cb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 8 08:39:50 2010 +0000
| 
|     Fix build failure with ld --as-needed (thanks Matthias Klose for the patch)
| 
| M	src/NEWS
| M	src/configure
|  
* commit f47f39c515d901068b41aae497ef2c423d6a167f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 8 08:36:35 2010 +0000
| 
|     Fix initialization error in KRR static interfaces.
|     Thanks Maxwell Collins for the patch.
| 
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 4669a9868789adb83c9d66a3f37aafb533aa2ff5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 7 14:37:27 2010 +0000
| 
|     set permissions
| 
| M	Makefile
|  
* commit 01084f0fac8bf600eafae584a59842b464b1fb08
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 7 14:13:01 2010 +0000
| 
|     Preparing for new Release shogun_0.10.0
| 
| M	doc/Doxyfile
|  
* commit e0e2c3f8077d835e902cc609bc97929e6d682519
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 7 14:12:46 2010 +0000
| 
|     also erase data dir on clean
| 
| M	Makefile
|  
* commit e3265e8160d750ec2716b1d4609deee59af1439f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 7 13:48:27 2010 +0000
| 
|     updated reference documentation
| 
| M	doc/pages/ExamplesModularPython.mainpage
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
|  
* commit d16396763a621b87bce7c122111eeb49497bbb73
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 7 13:32:57 2010 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit edfb7f796e66732514c84110f9be857e582910c5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 7 13:32:02 2010 +0000
| 
|     and use rsync in transfer
| 
| M	Makefile
|  
* commit 2f9b243bef3d82279324cb66fdfb7755face4443
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 7 13:29:44 2010 +0000
| 
|     add data in make release script
| 
| M	Makefile
| M	src/NEWS
| M	src/configure
|  
* commit 8ff89c01311190920f7358cdf4e2db4c75c39d72
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 7 12:39:36 2010 +0000
| 
|     create symlinks to the data directory
| 
| M	Makefile
| M	examples/undocumented/python_modular/kernel_auc_modular.py
| M	examples/undocumented/python_modular/kernel_linear_byte_modular.py
| M	examples/undocumented/python_modular/kernel_linear_word_modular.py
| M	examples/undocumented/python_modular/kernel_weighted_degree_position_string_modular.py
| M	src/Makefile.template
| A	testsuite/data
| A	testsuite/tests
|  
* commit 4df6d7615a48d7a25a1951d6fc352454630c3d63
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 7 12:36:46 2010 +0000
| 
|     move the tests to data
| 
| D	testsuite/data/classifier/LibLinear_0017_1en05_1_True.m
| D	testsuite/data/classifier/LibLinear_023_1en05_1_True.m
| D	testsuite/data/classifier/LibLinear_15_1en05_1_True.m
| D	testsuite/data/classifier/LibLinear_30_1en05_16_True.m
| D	testsuite/data/classifier/LibLinear_30_1en05_1_True.m
| D	testsuite/data/classifier/SVMLin_0017_1en05_1_True.m
| D	testsuite/data/classifier/SVMLin_023_1en05_1_True.m
| D	testsuite/data/classifier/SVMLin_15_1en05_1_True.m
| D	testsuite/data/classifier/SVMLin_30_1en05_16_True.m
| D	testsuite/data/classifier/SVMLin_30_1en05_1_True.m
| D	testsuite/data/classifier/SVMOcas_0017_1en05_1_05_False.m
| D	testsuite/data/classifier/SVMOcas_023_1en05_1_05_False.m
| D	testsuite/data/classifier/SVMOcas_15_1en05_1_05_False.m
| D	testsuite/data/classifier/SVMOcas_30_1en05_16_05_False.m
| D	testsuite/data/classifier/SVMOcas_30_1en05_1_05_False.m
| D	testsuite/data/classifier/SVMSGD_0017_1en05_1_True.m
| D	testsuite/data/classifier/SVMSGD_023_1en05_1_True.m
| D	testsuite/data/classifier/SVMSGD_15_1en05_1_True.m
| D	testsuite/data/classifier/SVMSGD_30_1en05_16_True.m
| D	testsuite/data/classifier/SVMSGD_30_1en05_1_True.m
| D	testsuite/data/classifier/SubGradientSVM_0017_1en05_1_05_False.m
| D	testsuite/data/classifier/SubGradientSVM_023_1en05_1_05_False.m
| D	testsuite/data/classifier/SubGradientSVM_15_1en05_1_05_False.m
| D	testsuite/data/classifier/SubGradientSVM_30_1en05_16_05_False.m
| D	testsuite/data/classifier/SubGradientSVM_30_1en05_1_05_False.m
| D	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| D	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| D	testsuite/data/distance/BrayCurtisDistance_fnord.m
| D	testsuite/data/distance/CanberraMetric_fnord.m
| D	testsuite/data/distance/CanberraWordDistance_DNA_False_60_3_0.m
| D	testsuite/data/distance/ChebyshewMetric_fnord.m
| D	testsuite/data/distance/ChiSquareDistance_fnord.m
| D	testsuite/data/distance/CosineDistance_fnord.m
| D	testsuite/data/distance/EuclidianDistance_fnord.m
| D	testsuite/data/distance/GeodesicMetric_fnord.m
| D	testsuite/data/distance/HammingWordDistance_False_DNA_False_60_3_0.m
| D	testsuite/data/distance/HammingWordDistance_True_DNA_False_60_3_0.m
| D	testsuite/data/distance/JensenMetric_fnord.m
| D	testsuite/data/distance/ManhattanMetric_fnord.m
| D	testsuite/data/distance/ManhattanWordDistance_DNA_False_60_3_0.m
| D	testsuite/data/distance/MinkowskiMetric_13.m
| D	testsuite/data/distance/SparseEuclidianDistance_fnord.m
| D	testsuite/data/distance/TanimotoDistance_fnord.m
| D	testsuite/data/distribution/HMM_1en10_60_4_1_0_6_3_False_CUBE.m
| D	testsuite/data/distribution/Histogram_60_3_0_False_DNA.m
| D	testsuite/data/distribution/LinearHMM_60_3_0_False_DNA.m
| D	testsuite/data/kernel/Chi2_10_12.m
| D	testsuite/data/kernel/Combined_True_3_10_3_LocalAlignmentString_60_FixedDegreeString_10_60_PolyMatchString_DNA_10_DNA_DNA_60.m
| D	testsuite/data/kernel/CommUlongString_DNA_10_0_False_3_60_False.m
| D	testsuite/data/kernel/CommWordString_DNA_10_0_False_3_60_False.m
| D	testsuite/data/kernel/Const_230.m
| D	testsuite/data/kernel/Custom_7.m
| D	testsuite/data/kernel/Diag_10_230.m
| D	testsuite/data/kernel/Distance_10_CanberraMetric_17.m
| D	testsuite/data/kernel/FixedDegreeString_3_DNA_10_60.m
| D	testsuite/data/kernel/GaussianShift_10_1_13_2.m
| D	testsuite/data/kernel/Gaussian_10_13.m
| D	testsuite/data/kernel/HistogramWordString_DNA_0_3_60_False.m
| D	testsuite/data/kernel/LinearByte_RAWBYTE_60.m
| D	testsuite/data/kernel/LinearString_DNA_60.m
| D	testsuite/data/kernel/LinearWord_fnord.m
| D	testsuite/data/kernel/Linear_fnord.m
| D	testsuite/data/kernel/LocalAlignmentString_DNA_10_60.m
| D	testsuite/data/kernel/MatchWordString_3_DNA_10_0_3_60_False.m
| D	testsuite/data/kernel/OligoString_DNA_10_3_60_12.m
| D	testsuite/data/kernel/OligoString_DNA_10_4_60_17.m
| D	testsuite/data/kernel/PolyMatchString_3_DNA_10_60_False.m
| D	testsuite/data/kernel/PolyMatchString_3_DNA_10_60_True.m
| D	testsuite/data/kernel/PolyMatchWordString_3_DNA_10_0_3_60_False_False.m
| D	testsuite/data/kernel/PolyMatchWordString_3_DNA_10_0_3_60_True_False.m
| D	testsuite/data/kernel/Poly_1_0_10_3_6_01_False_False_CUBE_1_FK.m
| D	testsuite/data/kernel/Poly_1_0_10_3_6_01_False_False_CUBE_1_TOP.m
| D	testsuite/data/kernel/Poly_3_10_False.m
| D	testsuite/data/kernel/Poly_3_10_True.m
| D	testsuite/data/kernel/SalzbergWordString_DNA_0_3_60_False.m
| D	testsuite/data/kernel/Sigmoid_10_05_07.m
| D	testsuite/data/kernel/Sigmoid_10_11_13.m
| D	testsuite/data/kernel/SimpleLocalityImprovedString_DNA_10_5_60_5_7.m
| D	testsuite/data/kernel/SparseGaussian_10_17.m
| D	testsuite/data/kernel/SparseLinear_fnord.m
| D	testsuite/data/kernel/SparsePoly_3_10_False.m
| D	testsuite/data/kernel/SparsePoly_3_10_True.m
| D	testsuite/data/kernel/WeightedCommWordString_DNA_10_0_False_3_60_False.m
| D	testsuite/data/kernel/WeightedDegreePositionString_1_DNA_10_60.m
| D	testsuite/data/kernel/WeightedDegreePositionString_20_DNA_10_60.m
| D	testsuite/data/kernel/WeightedDegreeString_DNA_1_60.m
| D	testsuite/data/kernel/WeightedDegreeString_DNA_20_60.m
| D	testsuite/data/preproc/LogPlusOne_12_Gaussian.m
| D	testsuite/data/preproc/NormOne_12_Gaussian.m
| D	testsuite/data/preproc/PruneVarSubMean_False_12_Gaussian.m
| D	testsuite/data/preproc/PruneVarSubMean_True_12_Gaussian.m
| D	testsuite/data/preproc/SortUlongString_DNA_0_CommUlongString_3_60_False.m
| D	testsuite/data/preproc/SortWordString_DNA_0_CommWordString_3_60_False.m
| D	testsuite/data/regression/KRR_16_15_Gaussian_1en05.m
| D	testsuite/data/regression/KRR_1_15_Gaussian_1en05.m
| D	testsuite/data/regression/KRR_1_15_Gaussian_1en06.m
| D	testsuite/data/regression/LibSVR_0017_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/LibSVR_023_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/LibSVR_15_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/LibSVR_30_16_15_Gaussian_00001_0001.m
| D	testsuite/data/regression/LibSVR_30_1_15_Gaussian_00001_0001.m
| D	testsuite/data/regression/LibSVR_30_1_15_Gaussian_00001_001.m
| D	testsuite/data/regression/LibSVR_30_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/SVRLight_0017_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/SVRLight_023_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/SVRLight_15_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/SVRLight_30_1_15_Gaussian_00001_0001.m
| D	testsuite/data/regression/SVRLight_30_1_15_Gaussian_00001_001.m
| D	testsuite/data/regression/SVRLight_30_1_15_Gaussian_1en05_001.m
|  
* commit 318837794dd19c795c31e06e700dd62f7c8398e5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 7 01:43:37 2010 +0000
| 
|     polish some examples
| 
| M	examples/undocumented/cmdline/kernel_top.sg
| M	examples/undocumented/python_modular/kernel_simple_locality_improved_string_modular.py
| M	examples/undocumented/python_modular/kernel_weighted_degree_position_string_modular.py
| M	examples/undocumented/python_modular/kernel_weighted_degree_string_modular.py
| M	examples/undocumented/python_modular/preproc_logplusone_modular.py
| M	examples/undocumented/python_modular/regression_svrlight_modular.py
| A	examples/undocumented/python_modular/serialization_complex_example.py
| M	examples/undocumented/python_modular/serialization_svmlight_modular.py
| M	testsuite/python_modular/tester.py
|  
* commit cebaa96f4d0208b8a698b67bc3bf57a1abecf231
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 7 01:25:34 2010 +0000
| 
|     many further serialization fixes
| 
| M	src/NEWS
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/kernel/CustomKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/lib/SerializableXmlFile.cpp
| M	src/libshogun/lib/SerializableXmlFile.h
|  
* commit d93c69c1bff60806e91025c7d7f8a4b0d7f065d7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Dec 5 21:13:06 2010 +0000
| 
|     - fix wd kernel weight setting and serialization
|     - check for x<0 in log(x) in jensenmetric
| 
| M	src/libshogun/distance/JensenMetric.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/lib/DataType.h
|  
* commit d1c2280cf78dfb641392e2c609a536c2737e2818
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 3 23:13:16 2010 +0000
| 
|     fix serialization for LIK
| 
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
|  
* commit 4592fe48c60bb74d78248cc971ca08aec7831276
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 3 22:20:05 2010 +0000
| 
|     larank/liblinear/kmeans are random algorithms and need special initialisation
| 
| M	examples/undocumented/python_modular/classifier_larank_modular.py
| M	examples/undocumented/python_modular/classifier_liblinear_modular.py
| M	examples/undocumented/python_modular/clustering_kmeans_modular.py
| M	examples/undocumented/python_modular/distance_hammingword_modular.py
|  
* commit 62f02737e08a7763aac8a7a1b2892de8652f11b6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 3 22:19:25 2010 +0000
| 
|     fix serialization for most of the distances and some kernels / kernelnormalizers
| 
| M	src/libshogun/classifier/PluginEstimate.h
| M	src/libshogun/distance/BrayCurtisDistance.h
| M	src/libshogun/distance/CanberraMetric.h
| M	src/libshogun/distance/CanberraWordDistance.cpp
| M	src/libshogun/distance/CanberraWordDistance.h
| M	src/libshogun/distance/ChebyshewMetric.cpp
| M	src/libshogun/distance/ChebyshewMetric.h
| M	src/libshogun/distance/ChiSquareDistance.cpp
| M	src/libshogun/distance/ChiSquareDistance.h
| M	src/libshogun/distance/CosineDistance.cpp
| M	src/libshogun/distance/CosineDistance.h
| M	src/libshogun/distance/CustomDistance.cpp
| M	src/libshogun/distance/CustomDistance.h
| M	src/libshogun/distance/Distance.cpp
| M	src/libshogun/distance/Distance.h
| M	src/libshogun/distance/EuclidianDistance.cpp
| M	src/libshogun/distance/EuclidianDistance.h
| M	src/libshogun/distance/GeodesicMetric.cpp
| M	src/libshogun/distance/GeodesicMetric.h
| M	src/libshogun/distance/HammingWordDistance.cpp
| M	src/libshogun/distance/HammingWordDistance.h
| M	src/libshogun/distance/JensenMetric.cpp
| M	src/libshogun/distance/JensenMetric.h
| M	src/libshogun/distance/KernelDistance.cpp
| M	src/libshogun/distance/KernelDistance.h
| M	src/libshogun/distance/ManhattanMetric.h
| M	src/libshogun/distance/ManhattanWordDistance.cpp
| M	src/libshogun/distance/ManhattanWordDistance.h
| M	src/libshogun/distance/SparseEuclidianDistance.cpp
| M	src/libshogun/distance/SparseEuclidianDistance.h
| M	src/libshogun/distance/TanimotoDistance.h
| M	src/libshogun/kernel/CommWordStringKernel.cpp
| M	src/libshogun/kernel/DiagKernel.cpp
| M	src/libshogun/kernel/DiagKernel.h
| M	src/libshogun/kernel/OligoStringKernel.h
| M	src/libshogun/kernel/SqrtDiagKernelNormalizer.h
|  
* commit 25056d36f0d763ca1151f5bfa91b8fd9344a542d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 3 14:13:39 2010 +0000
| 
|     get most of the tests back to work
| 
| M	examples/undocumented/cmdline/kernel_top.sg
| M	examples/undocumented/python_modular/classifier_domainadaptationsvm_modular.py
| M	examples/undocumented/python_modular/classifier_svmlight_batch_linadd_modular.py
| M	examples/undocumented/python_modular/distribution_hmm_modular.py
| M	examples/undocumented/python_modular/kernel_fisher_modular.py
| M	examples/undocumented/python_modular/kernel_histogram_word_string_modular.py
| M	examples/undocumented/python_modular/kernel_weighted_degree_position_string_modular.py
| M	examples/undocumented/python_modular/serialization_svmlight_modular.py
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
| M	src/libshogunui/GUIPluginEstimate.cpp
| M	testsuite/python_modular/generator.py
| M	testsuite/python_modular/tester.py
|  
* commit 653751caa4faf9961d7f4287bc3432d189e65c53
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 3 11:27:49 2010 +0000
| 
|     disable HMM/TOP/FK feature serializaton for now
| 
| M	src/libshogun/distributions/HMM.cpp
| M	src/libshogun/features/FKFeatures.cpp
|  
* commit 26c3c4ccdcdf74325e427ed058687d55f5ae7ffc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 3 10:44:37 2010 +0000
| 
|     various further serialization fixes
| 
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/classifier/PluginEstimate.cpp
| M	src/libshogun/classifier/PluginEstimate.h
| M	src/libshogun/distributions/HMM.cpp
| M	src/libshogun/distributions/HMM.h
| M	src/libshogun/features/FKFeatures.cpp
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/TOPFeatures.cpp
| M	src/libshogun/kernel/HistogramWordStringKernel.cpp
| M	src/libshogun/kernel/HistogramWordStringKernel.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/LocalAlignmentStringKernel.cpp
| M	src/libshogun/kernel/LocalAlignmentStringKernel.h
| M	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/MatchWordStringKernel.cpp
| M	src/libshogun/kernel/MatchWordStringKernel.h
| M	src/libshogun/kernel/OligoStringKernel.cpp
| M	src/libshogun/kernel/OligoStringKernel.h
| M	src/libshogun/kernel/PolyMatchStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchStringKernel.h
| M	src/libshogun/kernel/PolyMatchWordStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchWordStringKernel.h
| M	src/libshogun/kernel/SigmoidKernel.cpp
| M	src/libshogun/kernel/SigmoidKernel.h
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/libshogun/kernel/WeightedCommWordStringKernel.cpp
| M	src/libshogun/kernel/WeightedCommWordStringKernel.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/libshogun/lib/Trie.h
|  
* commit e78cb78be235a15917bb111024c758546f9907a2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 2 20:45:25 2010 +0000
| 
|     fix examples for serialization
| 
| M	examples/undocumented/python_modular/classifier_custom_kernel_modular.py
| M	examples/undocumented/python_modular/tests_check_commwordkernel_memleak_modular.py
|  
* commit e40acbb9d043761e13a3abb34cb1962a6af7a0a0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 2 20:44:51 2010 +0000
| 
|     further serialization fixes
| 
| M	src/libshogun/classifier/svm/SVMSGD.cpp
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/TOPFeatures.cpp
| M	src/libshogun/features/TOPFeatures.h
| M	src/libshogun/kernel/AvgDiagKernelNormalizer.h
| M	src/libshogun/kernel/DiceKernelNormalizer.h
| M	src/libshogun/kernel/FirstElementKernelNormalizer.h
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianShiftKernel.cpp
| M	src/libshogun/kernel/GaussianShiftKernel.h
| M	src/libshogun/kernel/SqrtDiagKernelNormalizer.h
| M	src/libshogun/kernel/VarianceKernelNormalizer.h
| M	src/libshogun/kernel/ZeroMeanCenterKernelNormalizer.h
| M	src/libshogun/lib/List.h
|  
* commit 8cf7b49265e570438d2684a24b51b35643c1f178
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 2 16:59:36 2010 +0000
| 
|     further serialization fixes
| 
| M	src/libshogun/base/Parameter.cpp
| M	src/libshogun/base/Parameter.h
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/classifier/svm/SVMOcas.cpp
| M	src/libshogun/distributions/LinearHMM.cpp
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/kernel/DiceKernelNormalizer.h
| M	src/libshogun/kernel/SqrtDiagKernelNormalizer.h
| M	src/libshogun/lib/List.h
|  
* commit 15ed7964199641cf8487af3e230c0c5099d1e4f7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 1 11:20:44 2010 +0000
| 
|     Always call base class constructor also in kernel normalizers.
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/SVMSGD.cpp
| M	src/libshogun/kernel/AvgDiagKernelNormalizer.h
| M	src/libshogun/kernel/DiceKernelNormalizer.h
| M	src/libshogun/kernel/FirstElementKernelNormalizer.h
| M	src/libshogun/kernel/IdentityKernelNormalizer.h
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelMaskNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelMaskPairNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelMklNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelTreeNormalizer.h
| M	src/libshogun/kernel/RidgeKernelNormalizer.h
| M	src/libshogun/kernel/ScatterKernelNormalizer.h
| M	src/libshogun/kernel/SqrtDiagKernelNormalizer.h
| M	src/libshogun/kernel/TanimotoKernelNormalizer.h
| M	src/libshogun/kernel/VarianceKernelNormalizer.h
| M	src/libshogun/kernel/ZeroMeanCenterKernelNormalizer.h
|  
* commit f1b02d0007c48eb21a2a889749412569cff844b4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 1 10:06:58 2010 +0000
| 
|     further fixes
| 
| M	src/libshogun/distance/HammingWordDistance.cpp
| M	src/libshogun/distance/HammingWordDistance.h
| M	src/libshogun/distance/MinkowskiMetric.cpp
| M	src/libshogun/distance/MinkowskiMetric.h
| M	src/libshogun/distributions/LinearHMM.cpp
| M	src/libshogun/distributions/LinearHMM.h
| M	src/libshogun/features/FKFeatures.cpp
| M	src/libshogun/features/FKFeatures.h
| M	src/libshogun/kernel/CommWordStringKernel.cpp
| M	src/libshogun/kernel/CommWordStringKernel.h
| M	src/libshogun/kernel/ConstKernel.cpp
| M	src/libshogun/kernel/ConstKernel.h
| M	src/libshogun/kernel/DiagKernel.cpp
| M	src/libshogun/kernel/DiagKernel.h
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/StringKernel.h
|  
* commit 25c9bcb95cc0b904b05b85096d833a836012bcdd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 1 08:38:16 2010 +0000
| 
|     fix / implement serialization for various classes
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/SVMOcas.cpp
| M	src/libshogun/classifier/svm/SVMOcas.h
| M	src/libshogun/classifier/svm/SVMSGD.cpp
| M	src/libshogun/classifier/svm/SVMSGD.h
| M	src/libshogun/classifier/svm/SubGradientSVM.cpp
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/kernel/FixedDegreeStringKernel.cpp
| M	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/LocalityImprovedStringKernel.h
| M	src/libshogun/kernel/SalzbergWordStringKernel.cpp
| M	src/libshogun/kernel/SalzbergWordStringKernel.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/lib/List.h
|  
* commit 3403666f43955d8dd9e53f05269abee9e00f0864
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 1 08:37:46 2010 +0000
| 
|     improve generator/tester outputs
| 
| M	testsuite/python_modular/generator.py
| M	testsuite/python_modular/tester.py
|  
* commit a7ede2359179c6856506dcdda116686101b340d8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 30 22:39:02 2010 +0000
| 
|     improve generator / tester
| 
| M	testsuite/python_modular/generator.py
| M	testsuite/python_modular/tester.py
|  
* commit ace4151bbac0f564bc5e5bded1da7d9e685cf07f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 30 22:16:40 2010 +0000
| 
|     fix the remaining examples
| 
| M	examples/undocumented/python_modular/classifier_domainadaptationsvm_modular.py
| M	examples/undocumented/python_modular/classifier_svmlight_batch_linadd_modular.py
| M	examples/undocumented/python_modular/classifier_svmlight_linear_term_modular.py
| M	examples/undocumented/python_modular/features_io_modular.py
| M	examples/undocumented/python_modular/features_read_svmlight_format_modular.py
| M	examples/undocumented/python_modular/features_simple_longint_modular.py
| M	examples/undocumented/python_modular/features_simple_modular.py
| M	examples/undocumented/python_modular/features_simple_real_modular.py
| M	examples/undocumented/python_modular/features_snp_modular.py
| M	examples/undocumented/python_modular/features_sparse_modular.py
| M	examples/undocumented/python_modular/features_string_char_compressed_modular.py
| M	examples/undocumented/python_modular/features_string_char_modular.py
| M	examples/undocumented/python_modular/features_string_file_char_modular.py
| M	examples/undocumented/python_modular/features_string_file_modular.py
| M	examples/undocumented/python_modular/features_string_hashed_wd_modular.py
| M	examples/undocumented/python_modular/features_string_sliding_window_modular.py
| M	examples/undocumented/python_modular/features_string_ulong_modular.py
| M	examples/undocumented/python_modular/serialization_svmlight_modular.py
| M	examples/undocumented/python_modular/structure_dynprog_modular.py
|  
* commit bc889a95d320916e3fb9195b4129f1417b109d2b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 30 13:50:08 2010 +0000
| 
|     fix a few more examples
| 
| M	examples/undocumented/python_modular/classifier_subgradientsvm_modular.py
| M	examples/undocumented/python_modular/features_simple_byte_modular.py
| M	examples/undocumented/python_modular/features_string_word_modular.py
| M	examples/undocumented/python_modular/tests_check_commwordkernel_memleak_modular.py
| M	src/libshogun/classifier/svm/SubGradientSVM.cpp
|  
* commit 329a6c80340e9967866b945e86f60191fcc3731c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 29 21:10:31 2010 +0000
| 
|     fix a few examples
| 
| M	examples/undocumented/python_modular/classifier_liblinear_modular.py
| M	examples/undocumented/python_modular/distribution_hmm_modular.py
| M	examples/undocumented/python_modular/kernel_custom_modular.py
| M	examples/undocumented/python_modular/mkl_multiclass_modular.py
| M	testsuite/python_modular/generator.py
|  
* commit 5f85746253ebedcc34b3078b8e514ecebaaa3384
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 29 19:32:04 2010 +0000
| 
|     - move tester / generator to trunk/testsuite/python_modular/
|     - merge marinas example changes
|     - fix path in d.l.'s ocr detector
| 
| M	applications/ocr/data/ocr.svm.gz
| M	examples/undocumented/python_modular/classifier_custom_kernel_modular.py
| M	examples/undocumented/python_modular/classifier_gmnpsvm_modular.py
| M	examples/undocumented/python_modular/classifier_gpbtsvm_modular.py
| M	examples/undocumented/python_modular/classifier_knn_modular.py
| M	examples/undocumented/python_modular/classifier_larank_modular.py
| M	examples/undocumented/python_modular/classifier_lda_modular.py
| M	examples/undocumented/python_modular/classifier_liblinear_modular.py
| M	examples/undocumented/python_modular/classifier_libsvm_modular.py
| M	examples/undocumented/python_modular/classifier_libsvmmulticlass_modular.py
| M	examples/undocumented/python_modular/classifier_libsvmoneclass_modular.py
| M	examples/undocumented/python_modular/classifier_mpdsvm_modular.py
| M	examples/undocumented/python_modular/classifier_perceptron_modular.py
| M	examples/undocumented/python_modular/classifier_svmlight_modular.py
| M	examples/undocumented/python_modular/classifier_svmlin_modular.py
| M	examples/undocumented/python_modular/classifier_svmocas_modular.py
| M	examples/undocumented/python_modular/classifier_svmsgd_modular.py
| M	examples/undocumented/python_modular/clustering_hierarchical_modular.py
| M	examples/undocumented/python_modular/clustering_kmeans_modular.py
| M	examples/undocumented/python_modular/distance_braycurtis_modular.py
| M	examples/undocumented/python_modular/distance_canberra_modular.py
| M	examples/undocumented/python_modular/distance_canberraword_modular.py
| M	examples/undocumented/python_modular/distance_chebyshew_modular.py
| M	examples/undocumented/python_modular/distance_chisquare_modular.py
| M	examples/undocumented/python_modular/distance_cosine_modular.py
| M	examples/undocumented/python_modular/distance_euclidian_modular.py
| M	examples/undocumented/python_modular/distance_geodesic_modular.py
| M	examples/undocumented/python_modular/distance_hammingword_modular.py
| M	examples/undocumented/python_modular/distance_jensen_modular.py
| M	examples/undocumented/python_modular/distance_manhatten_modular.py
| M	examples/undocumented/python_modular/distance_manhattenword_modular.py
| M	examples/undocumented/python_modular/distance_minkowski_modular.py
| M	examples/undocumented/python_modular/distance_normsquared_modular.py
| M	examples/undocumented/python_modular/distance_sparseeuclidean_modular.py
| M	examples/undocumented/python_modular/distance_tanimoto_modular.py
| M	examples/undocumented/python_modular/distribution_histogram_modular.py
| M	examples/undocumented/python_modular/distribution_linearhmm_modular.py
| M	examples/undocumented/python_modular/features_string_file_modular.py
| D	examples/undocumented/python_modular/generator.py
| M	examples/undocumented/python_modular/kernel_auc_modular.py
| M	examples/undocumented/python_modular/kernel_chi2_modular.py
| M	examples/undocumented/python_modular/kernel_combined_custom_poly_modular.py
| M	examples/undocumented/python_modular/kernel_combined_modular.py
| M	examples/undocumented/python_modular/kernel_comm_ulong_string_modular.py
| M	examples/undocumented/python_modular/kernel_comm_word_string_modular.py
| M	examples/undocumented/python_modular/kernel_const_modular.py
| M	examples/undocumented/python_modular/kernel_custom_modular.py
| M	examples/undocumented/python_modular/kernel_diag_modular.py
| M	examples/undocumented/python_modular/kernel_distance_modular.py
| M	examples/undocumented/python_modular/kernel_fisher_modular.py
| M	examples/undocumented/python_modular/kernel_fixed_degree_string_modular.py
| M	examples/undocumented/python_modular/kernel_gaussian_shift_modular.py
| M	examples/undocumented/python_modular/kernel_histogram_word_string_modular.py
| M	examples/undocumented/python_modular/kernel_io_modular.py
| M	examples/undocumented/python_modular/kernel_linear_byte_modular.py
| M	examples/undocumented/python_modular/kernel_linear_modular.py
| M	examples/undocumented/python_modular/kernel_linear_string_modular.py
| M	examples/undocumented/python_modular/kernel_linear_word_modular.py
| M	examples/undocumented/python_modular/kernel_local_alignment_string_modular.py
| M	examples/undocumented/python_modular/kernel_locality_improved_string_modular.py
| M	examples/undocumented/python_modular/kernel_match_word_string_modular.py
| M	examples/undocumented/python_modular/kernel_oligo_string_modular.py
| M	examples/undocumented/python_modular/kernel_poly_match_string_modular.py
| M	examples/undocumented/python_modular/kernel_poly_match_word_string_modular.py
| M	examples/undocumented/python_modular/kernel_poly_modular.py
| M	examples/undocumented/python_modular/kernel_salzberg_word_string_modular.py
| M	examples/undocumented/python_modular/kernel_sigmoid_modular.py
| M	examples/undocumented/python_modular/kernel_simple_locality_improved_string_modular.py
| M	examples/undocumented/python_modular/kernel_sparse_gaussian_modular.py
| M	examples/undocumented/python_modular/kernel_sparse_linear_modular.py
| M	examples/undocumented/python_modular/kernel_sparse_poly_modular.py
| M	examples/undocumented/python_modular/kernel_top_modular.py
| M	examples/undocumented/python_modular/kernel_weighted_comm_word_string_modular.py
| M	examples/undocumented/python_modular/kernel_weighted_degree_position_string_modular.py
| M	examples/undocumented/python_modular/kernel_weighted_degree_string_modular.py
| M	examples/undocumented/python_modular/mkl_binclass_modular.py
| M	examples/undocumented/python_modular/preproc_logplusone_modular.py
| M	examples/undocumented/python_modular/preproc_normone_modular.py
| M	examples/undocumented/python_modular/preproc_prunevarsubmean_modular.py
| M	examples/undocumented/python_modular/preproc_sortulongstring_modular.py
| M	examples/undocumented/python_modular/preproc_sortwordstring_modular.py
| M	examples/undocumented/python_modular/regression_krr_modular.py
| M	examples/undocumented/python_modular/regression_libsvr_modular.py
| M	examples/undocumented/python_modular/regression_svrlight_modular.py
| D	examples/undocumented/python_modular/tester.py
| M	src/libshogun/base/Parameter.cpp
| A	testsuite/python_modular/README
| A	testsuite/python_modular/generator.py
| A	testsuite/python_modular/tester.py
|  
* commit 261dab5e04652932b0490295e5974f77303f7bbe
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 29 09:56:44 2010 +0000
| 
|     move parameter into /base and really fix memory leak in combined dot features
| 
| A	src/libshogun/base/Parameter.cpp
| A	src/libshogun/base/Parameter.h
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/LinearClassifier.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/CombinedDotFeatures.cpp
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/features/DummyFeatures.h
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/lib/DynamicArray.h
| M	src/libshogun/lib/DynamicArrayPtr.h
| M	src/libshogun/lib/List.h
| D	src/libshogun/lib/Parameter.cpp
| D	src/libshogun/lib/Parameter.h
| M	src/modular/SGBase.i
|  
* commit bf7277a16e87857020ea983f96973fc0af0d7aab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 29 08:23:41 2010 +0000
| 
|     merge SGSerializable into SGObject and make ref/unref thread-safe again
| 
| M	examples/undocumented/python_modular/serialization_svmlight_modular.py
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/base/class_list.cpp.sh
| M	src/libshogun/base/class_list.cpp.templ
| M	src/libshogun/base/class_list.h
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/LinearClassifier.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/features/CombinedDotFeatures.cpp
| M	src/libshogun/features/CombinedFeatures.cpp
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/AUCKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/lib/DataType.cpp
| M	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/DynamicArrayPtr.h
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/List.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| D	src/libshogun/lib/SGSerializable.cpp
| D	src/libshogun/lib/SGSerializable.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiReader00.cpp
| M	src/libshogun/lib/SerializableFile.h
| M	src/libshogun/lib/SerializableHdf5File.cpp
| M	src/libshogun/lib/SerializableHdf5Reader00.cpp
| M	src/libshogun/lib/SerializableJsonFile.cpp
| M	src/libshogun/lib/SerializableJsonReader00.cpp
| M	src/libshogun/lib/SerializableXmlFile.cpp
| M	src/libshogun/lib/SerializableXmlReader00.cpp
| M	src/libshogunui/GUIPreProc.cpp
| M	src/modular/SGBase.i
|  
* commit d0d91be1b32f7155d425f7969bb45dcc0c5ce8b0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 28 22:21:43 2010 +0000
| 
|     simplify code
| 
| M	src/libshogun/features/CombinedDotFeatures.h
|  
* commit ce5faf5b20682e0df3c3d3e8a8545a0b389b3f6f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 28 14:44:57 2010 +0000
| 
|     fix sparse features under python modular
| 
| M	src/libshogun/features/SparseFeatures.h
| M	src/modular/Features.i
|  
* commit 54f2ce4909a30f2a5b5306d507673e3f3d608bcf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 28 13:59:27 2010 +0000
| 
|     get structure modul back to work
| 
| M	src/modular/Structure.i
|  
* commit 75b4ea3c1bef50223630cb4e56a0a5dbd4fbc32f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 28 13:37:06 2010 +0000
| 
|     fix hdf5file
| 
| M	src/libshogun/lib/HDF5File.h
|  
* commit ee155baa90400f3bd9beab000c272c1b6d3ea173
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 28 13:36:53 2010 +0000
| 
|     fix broken examples
| 
| M	examples/undocumented/python_modular/features_io_modular.py
| M	examples/undocumented/python_modular/features_string_file_modular.py
| M	examples/undocumented/python_modular/kernel_linear_string_modular.py
|  
* commit a75ed8ee24a2fba9609ccd674b475f323642c59d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 28 13:20:59 2010 +0000
| 
|     fix linear term
| 
| M	src/libshogun/classifier/svm/LibSVM.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVM.h
| M	src/libshogun/classifier/svm/SVMLight.cpp
| M	src/libshogun/regression/svr/SVRLight.cpp
| M	src/modular/Classifier.i
|  
* commit 016223aaf23eb32973072e5ef8fe1983e755786d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 27 23:57:13 2010 +0000
| 
|     potentially fix memory leak in analogy to combinedfeatures
| 
| M	src/libshogun/features/CombinedDotFeatures.h
|  
* commit 8970f6dbc225ff7f8bcc41721daf51418b56f6bb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 27 23:42:00 2010 +0000
| 
|     revert commit r5138, causing reference counting related crashes:
|     
|     e.g. this function
|     
|     CSGSerializable* get_first_element()
|     {
|     	return obj;
|     }
|     
|     is racy, since it forgets to ref() obj.
| 
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/CombinedFeatures.cpp
| M	src/libshogun/features/CombinedFeatures.h
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/lib/List.h
|  
* commit a52d5013d08ca4b897c2ec1e6271c8c28b12f2b9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 27 23:37:32 2010 +0000
| 
|     fix compilation with dynarray
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/cmdline/CmdLineInterface.h
| M	src/libshogun/lib/DynamicArray.h
|  
* commit 9a5a027c5c0f3cf3be2df0fab942e4bedd5949e5
| Author: D. Lehmann <>
| Date:   Sat Nov 27 00:14:35 2010 +0000
| 
|     * src/libshogun/*
|     
|       - Closes <1290809148.4590.29.camel@no.ml.tu-berlin.de> ...
|     
|            !!! FUCK OFF Soeren !!!
| 
| M	src/libshogun/base/DynArray.h
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/CombinedFeatures.cpp
| M	src/libshogun/features/CombinedFeatures.h
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/lib/List.h
|  
* commit 14cc6cb16b725c739da24fb93b1e5e47e9a3d165
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 26 23:15:00 2010 +0000
| 
|     remove linear term std vector and fix crasher when linear term is not set
| 
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/SVM_linear.h
| M	src/modular/Classifier.i
|  
* commit 2f49263cd3294586224be4203c438ce4a8138df7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 26 22:37:28 2010 +0000
| 
|     compile fix for trunk
| 
| M	src/libshogun/lib/DynamicArray.h
| M	src/libshogunui/GUIPreProc.cpp
| M	src/libshogunui/GUIPreProc.h
|  
* commit 866367137e6049b56c6a5c372191f00cd38e2bfe
| Author: D. Lehmann <>
| Date:   Fri Nov 26 22:02:45 2010 +0000
| 
|     * examples/undocumented/python_modular/tester.py
|     
|       - Works (in cooperation with Marina).
| 
| M	examples/undocumented/python_modular/tester.py
|  
* commit b1c105ab2b1911ba060fa39e8f450eddf9a661d5
| Author: D. Lehmann <>
| Date:   Fri Nov 26 21:58:49 2010 +0000
| 
|     * src/*
|     
|       - Backup ...
|     
|     * applications/ocr/data/ocr.svm.gz
|     
|       - Adapting new format.
| 
| M	applications/ocr/data/ocr.svm.gz
| M	src/libshogun/base/DynArray.h
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/classifier/KernelPerceptron.cpp
| M	src/libshogun/classifier/LinearClassifier.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/clustering/Hierarchical.cpp
| M	src/libshogun/clustering/KMeans.cpp
| M	src/libshogun/distance/Distance.cpp
| M	src/libshogun/features/AttributeFeatures.h
| M	src/libshogun/features/CombinedDotFeatures.cpp
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/CombinedFeatures.cpp
| M	src/libshogun/features/CombinedFeatures.h
| M	src/libshogun/features/DummyFeatures.h
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/AUCKernel.cpp
| M	src/libshogun/kernel/AUCKernel.h
| M	src/libshogun/kernel/Chi2Kernel.cpp
| M	src/libshogun/kernel/Chi2Kernel.h
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/kernel/CustomKernel.cpp
| M	src/libshogun/kernel/CustomKernel.h
| M	src/libshogun/kernel/FixedDegreeStringKernel.cpp
| M	src/libshogun/kernel/FixedDegreeStringKernel.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/PolyKernel.cpp
| M	src/libshogun/kernel/PolyKernel.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/DynamicArray.h
| A	src/libshogun/lib/DynamicArrayPtr.h
| M	src/libshogun/lib/List.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiFile.h
| M	src/libshogun/lib/SerializableAsciiReader00.cpp
| M	src/libshogun/lib/SerializableHdf5File.h
| M	src/libshogun/lib/SerializableJsonFile.h
| M	src/libshogun/lib/SerializableXmlFile.cpp
| M	src/libshogun/lib/SerializableXmlFile.h
| M	src/libshogun/lib/SerializableXmlReader00.cpp
| M	src/libshogun/lib/Trie.h
| M	src/libshogun/lib/io.h
| M	src/libshogun/preproc/DecompressString.h
| M	src/libshogun/preproc/LogPlusOne.cpp
| M	src/libshogun/preproc/NormDerivativeLem3.cpp
| M	src/libshogun/preproc/NormOne.cpp
| M	src/libshogun/preproc/SortUlongString.cpp
| M	src/libshogun/preproc/SortWordString.cpp
| M	src/libshogun/regression/KRR.cpp
| M	src/libshogun/structure/PlifArray.h
| M	src/modular/Library.i
| M	src/modular/SGBase.i
|  
* commit bc4534ec76f83ccb9249a2ef143e9d64ca6ef9a6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 24 07:09:46 2010 +0000
| 
|     fix example and update news
| 
| M	examples/undocumented/libshogun/kernel_revlin.cpp
| M	src/NEWS
|  
* commit c95aaae3cfda5538e54d00d643d8e4e5e90064a2
| Author: D. Lehmann <>
| Date:   Wed Nov 24 00:06:36 2010 +0000
| 
|     * applications/ocr/*
|     
|       - Adapting example to serialization, using PICKLE.
|     
|     * src/libshogun/*
|     
|       - Replacing some STD::VECTOR's with T*
| 
| M	applications/ocr/Ai.py
| M	applications/ocr/common.py
| M	applications/ocr/data/ocr.svm.gz
| D	applications/ocr/data/ocr.svm.head
| M	applications/ocr/predict
| M	src/libshogun/base/init.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
| M	src/libshogun/classifier/svm/GMNPSVM.h
| M	src/libshogun/classifier/svm/LibSVM.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVM.h
| M	src/libshogun/classifier/svm/SVMLight.cpp
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiReader00.cpp
| M	src/libshogun/lib/SerializableXmlFile.cpp
| M	src/libshogun/lib/SerializableXmlReader00.cpp
| M	src/libshogun/regression/svr/SVRLight.cpp
|  
* commit c37cb0c65f24f38d10c6687834c193d3ded47843
| Author: D. Lehmann <>
| Date:   Tue Nov 23 20:18:40 2010 +0000
| 
|     * src/libshogun/lib/Serializable*{File,Reader00}.{h,cpp}
|     
|       - Versioning support for all file formats at serialization level.
|     
|     * src/configure
|     
|       - libxml2 version >= 2.7.0 is required.
|     
|     * src/libshogun/lib/Serializable{Ascii,Xml}*
|     
|       - Using [sf]PRINTF's `%g' for floating point IO.
|     
|     * src/libshogun/lib/DataType.h
|     
|       - T_SPARSE_ENTRY::__DUMMY removed.  Not tested on 64-bit machines.
|         I need to check-in my current implementation first.  If there is
|         no commit at the next few hours then it works ;) ...
| 
| M	src/configure
| M	src/libshogun/lib/DataType.cpp
| M	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiFile.h
| A	src/libshogun/lib/SerializableAsciiReader00.cpp
| A	src/libshogun/lib/SerializableAsciiReader00.h
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/libshogun/lib/SerializableFile.h
| M	src/libshogun/lib/SerializableHdf5File.cpp
| M	src/libshogun/lib/SerializableHdf5File.h
| A	src/libshogun/lib/SerializableHdf5Reader00.cpp
| A	src/libshogun/lib/SerializableHdf5Reader00.h
| M	src/libshogun/lib/SerializableJsonFile.cpp
| M	src/libshogun/lib/SerializableJsonFile.h
| A	src/libshogun/lib/SerializableJsonReader00.cpp
| A	src/libshogun/lib/SerializableJsonReader00.h
| M	src/libshogun/lib/SerializableXmlFile.cpp
| M	src/libshogun/lib/SerializableXmlFile.h
| A	src/libshogun/lib/SerializableXmlReader00.cpp
| A	src/libshogun/lib/SerializableXmlReader00.h
|  
* commit f14a1abf64b7494ac815ac790be8663bf4f4345e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 23 12:38:41 2010 +0000
| 
|     improve tester/generator and gausskernel example
| 
| M	examples/undocumented/python_modular/generator.py
| M	examples/undocumented/python_modular/kernel_fixed_degree_string_modular.py
| M	examples/undocumented/python_modular/kernel_gaussian_modular.py
| M	examples/undocumented/python_modular/kernel_weighted_degree_string_modular.py
| M	examples/undocumented/python_modular/tester.py
|  
* commit d51c1b9e080f0d756a46f44fc403d2e4b591d396
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 23 11:48:19 2010 +0000
| 
|     add marinas test generator and tester
| 
| M	examples/undocumented/python_modular/classifier_custom_kernel_modular.py
| M	examples/undocumented/python_modular/classifier_knn_modular.py
| A	examples/undocumented/python_modular/generator.py
| M	examples/undocumented/python_modular/kernel_auc_modular.py
| M	examples/undocumented/python_modular/kernel_chi2_modular.py
| M	examples/undocumented/python_modular/kernel_combined_custom_poly_modular.py
| M	examples/undocumented/python_modular/kernel_comm_ulong_string_modular.py
| M	examples/undocumented/python_modular/kernel_comm_word_string_modular.py
| M	examples/undocumented/python_modular/kernel_const_modular.py
| M	examples/undocumented/python_modular/kernel_custom_modular.py
| M	examples/undocumented/python_modular/kernel_diag_modular.py
| M	examples/undocumented/python_modular/kernel_distance_modular.py
| M	examples/undocumented/python_modular/kernel_fisher_modular.py
| M	examples/undocumented/python_modular/kernel_fixed_degree_string_modular.py
| M	examples/undocumented/python_modular/kernel_gaussian_modular.py
| M	examples/undocumented/python_modular/kernel_gaussian_shift_modular.py
| M	examples/undocumented/python_modular/kernel_histogram_word_string_modular.py
| M	examples/undocumented/python_modular/kernel_io_modular.py
| M	examples/undocumented/python_modular/kernel_linear_byte_modular.py
| M	examples/undocumented/python_modular/kernel_linear_modular.py
| M	examples/undocumented/python_modular/kernel_linear_string_modular.py
| M	examples/undocumented/python_modular/kernel_linear_word_modular.py
| M	examples/undocumented/python_modular/kernel_local_alignment_string_modular.py
| M	examples/undocumented/python_modular/kernel_locality_improved_string_modular.py
| M	examples/undocumented/python_modular/kernel_weighted_degree_position_string_modular.py
| M	examples/undocumented/python_modular/structure_dynprog_modular.py
| A	examples/undocumented/python_modular/tester.py
|  
* commit 771fe857954d54d6a5d9c64fddf3034f4f8a7c20
| Author: D. Lehmann <>
| Date:   Sun Nov 21 23:28:26 2010 +0000
| 
|     * src/libshogun/lib/SerializableXmlFile.{h,cpp}
|     
|       - Added.
|     
|     * src/libshogun/lib/SerializableJSONFile.{h,cpp}
|     
|       - Renamed to `SerializableJsonFile'.
|     
|     * src/libshogun/lib/SerializableHDF5File.{h,cpp}
|     
|       - Renamed to `SerializableHdf5File'.
| 
| M	src/configure
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| D	src/libshogun/lib/SerializableHDF5File.cpp
| D	src/libshogun/lib/SerializableHDF5File.h
| A	src/libshogun/lib/SerializableHdf5File.cpp
| A	src/libshogun/lib/SerializableHdf5File.h
| D	src/libshogun/lib/SerializableJSONFile.cpp
| D	src/libshogun/lib/SerializableJSONFile.h
| A	src/libshogun/lib/SerializableJsonFile.cpp
| A	src/libshogun/lib/SerializableJsonFile.h
| A	src/libshogun/lib/SerializableXmlFile.cpp
| A	src/libshogun/lib/SerializableXmlFile.h
| M	src/modular/Library.i
|  
* commit 013b208fe0089e7c6f461526c0964c2b1e417a5c
| Author: D. Lehmann <>
| Date:   Thu Nov 18 01:42:39 2010 +0000
| 
|     * src/libshogun/classifier/svm/{DomainAdaptationSVM,LibLinear}.h
|     
|       - Closes:
|     
|         <AANLkTi=eoR4sNhvP1orSbc_HWm7vKk1voPt4GKckYy0b@mail.gmail.com>
|     
|         Compiling error if `./configure --disable-lapack'.
| 
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| M	src/libshogun/classifier/svm/LibLinear.h
|  
* commit 42b651afa9e3196697531a9bc73d47e8ba274677
| Author: D. Lehmann <>
| Date:   Wed Nov 17 21:14:16 2010 +0000
| 
|     * src/libshogun/lib/*
|     
|       - Improving SERIALIZBALE_HDF5_FILE for faster access to persistent
|         storage.
| 
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiFile.h
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/libshogun/lib/SerializableFile.h
| M	src/libshogun/lib/SerializableHDF5File.cpp
| M	src/libshogun/lib/SerializableHDF5File.h
| M	src/libshogun/lib/SerializableJSONFile.cpp
| M	src/libshogun/lib/SerializableJSONFile.h
|  
* commit 08a7c1af6d4c03d328a45da1762a48f2ea54ba82
| Author: D. Lehmann <>
| Date:   Mon Nov 15 16:25:05 2010 +0000
| 
|     * src/libshogun/lib/SerializableJSONFile.{h,cpp}
|     
|       - Works.
|     
|     * src/libshogun/lib/DataType.h
|     
|       - 64 bit compatible.
| 
| M	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/libshogun/lib/SerializableFile.h
| M	src/libshogun/lib/SerializableJSONFile.cpp
| M	src/libshogun/lib/SerializableJSONFile.h
|  
* commit de185f31adf06dd8ed60ec426e9f92249e90f3c7
| Author: D. Lehmann <>
| Date:   Sun Nov 14 20:22:24 2010 +0000
| 
|     * src/*
|     
|       - Sparse r/w, String r/w implemented.
|     
|       - JSON feature test implemented.
|     
|     BORING?! O.O -- Hearing KB's - fr08 =) ... YEEEAH, GREAT
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/cmdline/CmdLineInterface.h
| M	src/configure
| M	src/libshogun/base/class_list.cpp.sh
| M	src/libshogun/base/class_list.cpp.templ
| M	src/libshogun/base/class_list.h
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/StringFileFeatures.h
| M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumRBFKernel.h
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/DataType.cpp
| M	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/File.cpp
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/HDF5File.h
| M	src/libshogun/lib/LibSVMFile.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/libshogun/lib/SGSerializable.cpp
| M	src/libshogun/lib/SGSerializable.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiFile.h
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/libshogun/lib/SerializableFile.h
| M	src/libshogun/lib/SerializableHDF5File.cpp
| M	src/libshogun/lib/SerializableHDF5File.h
| A	src/libshogun/lib/SerializableJSONFile.cpp
| A	src/libshogun/lib/SerializableJSONFile.h
| M	src/libshogun/structure/PlifMatrix.cpp
| M	src/libshogun/structure/PlifMatrix.h
| M	src/libshogunui/GUIFeatures.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/matlab/MatlabInterface.cpp
| M	src/matlab/MatlabInterface.h
| M	src/modular/Features.i
| M	src/modular/Library.i
| M	src/modular/Structure.i
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| M	src/octave_modular/swig_typemaps.i
| M	src/python/PythonInterface.cpp
| M	src/python/PythonInterface.h
| M	src/python_modular/swig_typemaps.i
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
| M	src/r_modular/swig_typemaps.i
|  
* commit 6522af2a9122a1ae2c398d887caf76f7a51e2fa6
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Nov 12 10:50:02 2010 +0000
| 
|     removed exclusion flags
| 
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
|  
* commit 0a9436f9d486e82273c72976f722182d88b3d9ee
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Nov 11 12:39:11 2010 +0000
| 
|     fixed indentation
| 
| M	src/libshogun/classifier/LinearClassifier.cpp
|  
* commit c07a0f8078ef51c6399fa77f535131f1fe5169ef
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Wed Nov 10 21:19:25 2010 +0000
| 
|     fixed issue with default constructor
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
|  
* commit 8b9abc40e304619216cdfd85a48ff1bc70007909
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Wed Nov 10 20:49:02 2010 +0000
| 
|     small fix
| 
| M	src/libshogun/classifier/LinearClassifier.cpp
| M	src/libshogun/classifier/svm/LibLinear.cpp
|  
* commit 41b6136cd73d81ab061adc9c2c28d7305b8489bd
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Wed Nov 10 20:20:58 2010 +0000
| 
|     added serialization code to a few linear classifiers (still incomplete)
| 
| M	src/libshogun/classifier/LinearClassifier.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
|  
* commit 619661eac08fa85ef4f607102ccc99b4db8ecbec
| Author: D. Lehmann <>
| Date:   Sun Nov 7 17:42:23 2010 +0000
| 
|     * src/*
|     
|       - reverted to revision 5113 ... too many pointers :((
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/cmdline/CmdLineInterface.h
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/StringFileFeatures.h
| M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumRBFKernel.h
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/File.cpp
| M	src/libshogun/lib/File.h
| M	src/libshogun/structure/PlifMatrix.cpp
| M	src/libshogun/structure/PlifMatrix.h
| M	src/libshogunui/GUIFeatures.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/matlab/MatlabInterface.cpp
| M	src/matlab/MatlabInterface.h
| M	src/modular/Features.i
| M	src/modular/Structure.i
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| M	src/octave_modular/swig_typemaps.i
| M	src/python/PythonInterface.cpp
| M	src/python/PythonInterface.h
| M	src/python_modular/swig_typemaps.i
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
| M	src/r_modular/swig_typemaps.i
|  
* commit f2b0b4eb224447ca82d48d74b53931ee7f1c6b95
| Author: D. Lehmann <>
| Date:   Sat Nov 6 03:26:18 2010 +0000
| 
|     * src/*
|     
|       - String(Features) are storable :)
|     
|       - Matlab (R) binding not tested; no license.
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/cmdline/CmdLineInterface.h
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/StringFileFeatures.h
| M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumRBFKernel.h
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/File.cpp
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/structure/PlifMatrix.cpp
| M	src/libshogun/structure/PlifMatrix.h
| M	src/libshogunui/GUIFeatures.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/matlab/MatlabInterface.cpp
| M	src/matlab/MatlabInterface.h
| M	src/modular/Features.i
| M	src/modular/Structure.i
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| M	src/octave_modular/swig_typemaps.i
| M	src/python/PythonInterface.cpp
| M	src/python/PythonInterface.h
| M	src/python_modular/swig_typemaps.i
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
| M	src/r_modular/swig_typemaps.i
|  
* commit 19669f51b9b86b470cfcff397fb3d607bb74de27
| Author: D. Lehmann <>
| Date:   Fri Nov 5 12:20:49 2010 +0000
| 
|     * src/libshogun/kernel/MultitaskKernelMaskNormalizer.h,
|       src/libshogun/kernel/Kernel.h
|     
|       - Missing include added.  Thanks to xjc =)
| 
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/MultitaskKernelMaskNormalizer.h
|  
* commit c22461075c7ac32d23e1d9d0c4daaef038191027
| Author: D. Lehmann <>
| Date:   Thu Nov 4 16:50:13 2010 +0000
| 
|     * src/libshogun/base/DynArray.h
|     
|       - Fixes compiling issue.
| 
| M	src/libshogun/base/DynArray.h
|  
* commit 24d247178b8c7c3a7723c8a9d0333e1bfcc0a580
| Author: D. Lehmann <>
| Date:   Thu Nov 4 15:50:15 2010 +0000
| 
|     * src/modular/SGBase.i
|     
|       - All Python Pickle protocols are supported now.  The protocols are
|         using:
|     
|           + 0: SERIALIZABLE_ASCII_FILE
|     
|           + otherwise: SERIALIZABLE_HDF5_FILE
|     
|           + fallback: SERIALIZABLE_ASCII_FILE
|     
|     * src/libshogun/*
|     
|       - SG_SERIALIZABLE::LOAD_SERIALIZABLE_{PRE,POST} added.  An example
|         implementation you can find in CALPHABET::LOAD_SERIALIZABLE_POST.
| 
| M	src/libshogun/base/DynArray.h
| M	src/libshogun/base/class_list.cpp.sh
| M	src/libshogun/distributions/HMM.cpp
| M	src/libshogun/distributions/HMM.h
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/FirstElementKernelNormalizer.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
| M	src/libshogun/lib/DynamicArray.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/libshogun/lib/SGSerializable.cpp
| M	src/libshogun/lib/SGSerializable.h
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/modular/Distribution.i
| M	src/modular/SGBase.i
|  
* commit 1e354c644e171a47abe5b242243522644a84a957
| Author: D. Lehmann <>
| Date:   Wed Nov 3 12:42:54 2010 +0000
| 
|     src/libshogun/lib/ShogunException.{h,cpp}
|     
|       - SHOGUN_EXCEPTION leaks during tracing the stack.
| 
| M	src/libshogun/lib/ShogunException.cpp
| M	src/libshogun/lib/ShogunException.h
|  
* commit bf820966860c6c4bda0bcba73e77b78f6c44cee8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 1 20:33:14 2010 +0000
| 
|     update news
| 
| M	src/NEWS
|  
* commit 96bc036f203851d0eaba0435e2f306de74161930
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 1 20:05:34 2010 +0000
| 
|     remove cruft from kmeans
| 
| M	src/libshogun/clustering/KMeans.cpp
| M	src/libshogun/clustering/KMeans.h
|  
* commit 52de185af24d93059427ec8a495ff474d436c838
| Author: D. Lehmann <>
| Date:   Mon Nov 1 12:11:26 2010 +0000
| 
|     * src/libshogun/kernel/MultitaskKernelNormalizer.h
|     
|       - Missing #INCLUDE, using C workaround.
| 
| M	src/libshogun/kernel/MultitaskKernelNormalizer.h
|  
* commit a3a36129496a1385b98226dcd507748f5650f992
| Author: D. Lehmann <>
| Date:   Mon Nov 1 11:56:11 2010 +0000
| 
|     * src/configure
|     
|       - HDF5 version 1.8.0 or greater is required.
| 
| M	src/configure
|  
* commit ecd8cfe6fb3b9515f2356629efdf41f93bfa43bd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 29 21:35:05 2010 +0000
| 
|     compile fix
| 
| M	src/libshogun/kernel/MultitaskKernelMaskNormalizer.h
|  
* commit 2c40410209e1bdda0edda150f168b710f71853ad
| Author: D. Lehmann <>
| Date:   Fri Oct 29 21:23:37 2010 +0000
| 
|     * src/libshogun/lib/Parameter.cpp
|     
|       - Forgotten to REF fresh instantiated SG_SERIALIZABLE's during
|         loading =)
| 
| M	src/libshogun/lib/Parameter.cpp
|  
* commit 26bfda127c431df29616f62b1c8033ec07372ca1
| Author: D. Lehmann <>
| Date:   Fri Oct 29 21:01:51 2010 +0000
| 
|     * src/*
|     
|       - Reading of SERIALIZABLE_HDF5_FILE seems to be work.
|     
|       - Reloading seems to be work (SG_UNREF during loading a
|         SG_SERIALIZABLE instead of DELETE)
|     
|       - Un-/Pickling of Shogun objects (in Python) seems to be work.
|     
|     Current working example; check if output is empty:
|     
|       * (h5diff -c blaah* && diff pickle*) | grep -v '^Not comparable'
|     
|     
|         *** snip ***
|     
|     # ********************************************************************
|     
|     from numpy import *; from numpy.random import randn
|     from shogun.Features import *; from shogun.Classifier import *;
|     from shogun.Kernel import *; from shogun.Library import *;
|     from shogun.PreProc import *
|     
|     import pickle as pkl
|     
|     num = 5; dist = 1; dim = 10
|     
|     data = concatenate((randn(dim, num), randn(dim, num) + dist,
|                         randn(dim, num) + 2*dist,
|                         randn(dim, num) + 3*dist), axis=1)
|     lab = concatenate((zeros(num), ones(num), 2*ones(num), 3*ones(num)))
|     
|     feats = RealFeatures(data)
|     kernel = GaussianKernel(feats, feats, 2.1)
|     
|     labels = Labels(lab)
|     
|     print "*** Begin\n"
|     
|     svm = GMNPSVM(1, kernel, labels)
|     
|     feats.add_preproc(NormOne())
|     feats.add_preproc(LogPlusOne())
|     feats.add_preproc(NormDerivativeLem3())
|     feats.set_preprocessed(1)
|     svm.train(feats)
|     
|     #svm.print_serializable()
|     
|     fstream = SerializableHDF5File("blaah.h5", "w")
|     if svm.save_serializable(fstream): print "OK writing\n"
|     else: print "ERROR writing\n"
|     
|     f = open("pickle.pkl", 'w'); pkl.dump(svm, f); f.close()
|     
|     svm = GMNPSVM()
|     fstream = SerializableHDF5File("blaah.h5", "r")
|     if svm.load_serializable(fstream): print "OK reading\n"
|     else: print "ERROR reading\n"
|     
|     fstream = SerializableHDF5File("blaah2.h5", "w")
|     svm.save_serializable(fstream)
|     
|     f = open("pickle.pkl", 'r'); svm = pkl.load(f); f.close()
|     f = open("pickle2.pkl", 'w'); pkl.dump(svm, f); f.close()
|     
|     print "*** End\n"
|     
|     # ********************************************************************
|     
|         *** snap ***
| 
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/SGSerializable.cpp
| M	src/libshogun/lib/SGSerializable.h
| M	src/libshogun/lib/SerializableHDF5File.cpp
| M	src/libshogun/lib/SerializableHDF5File.h
| M	src/modular/SGBase.i
|  
* commit a4c25c743ed2398bda84eb433a89a068291eb8eb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 28 08:25:19 2010 +0000
| 
|     add code to serialize WD kernel / alphabet and a few kernel normalizers
| 
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| M	src/libshogun/classifier/svm/LibSVM.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVMLight.cpp
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Labels.cpp
| D	src/libshogun/features/SimpleFeatures.cpp
| D	src/libshogun/features/StringFeatures.cpp
| D	src/libshogun/kernel/AvgDiagKernelNormalizer.cpp
| M	src/libshogun/kernel/AvgDiagKernelNormalizer.h
| D	src/libshogun/kernel/FirstElementKernelNormalizer.cpp
| M	src/libshogun/kernel/FirstElementKernelNormalizer.h
| D	src/libshogun/kernel/IdentityKernelNormalizer.cpp
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| D	src/libshogun/kernel/KernelNormalizer.cpp
| M	src/libshogun/kernel/MultitaskKernelTreeNormalizer.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/libshogun/kernel/WeightedDegreeRBFKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
|  
* commit 98b3152822f58f763023f648e4201e98b8f88f96
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 28 04:12:49 2010 +0000
| 
|     remove boost serialisation support
| 
| M	src/configure
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.h
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| M	src/libshogun/classifier/svm/SVM.h
| M	src/libshogun/classifier/svm/SVMLight.h
| M	src/libshogun/classifier/svm/SVM_linear.h
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/RealFileFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/AvgDiagKernelNormalizer.h
| M	src/libshogun/kernel/FirstElementKernelNormalizer.h
| M	src/libshogun/kernel/IdentityKernelNormalizer.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelMklNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelTreeNormalizer.h
| M	src/libshogun/kernel/SpectrumMismatchRBFKernel.h
| M	src/libshogun/kernel/SpectrumRBFKernel.h
| M	src/libshogun/kernel/StringKernel.h
| M	src/libshogun/kernel/WeightedDegreeRBFKernel.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/common.h
|  
* commit 0e554371e69f14134c6d5851faea8a100174fab9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 28 03:32:43 2010 +0000
| 
|     keep track of changes in news
| 
| M	src/NEWS
|  
* commit ce8f23faef237145a69f43159f2d44d02e703175
| Author: D. Lehmann <>
| Date:   Wed Oct 27 23:02:23 2010 +0000
| 
|     * src/libshogun/lib/*
|     
|       - Writing of SERIALIZABLE_HDF5_FILE seems to be work.  The code
|         snippet attached to this log produces the HDF5 structure (HDFView
|         screenshot):
|     
|           * http://www.user.tu-berlin.de/ldirk/etc/hdfview-gmnpsvm.png
|     
|         It looks nice if you can visualize your data structures =) ...
|     
|     * src/modular/Library.i
|     
|       - Class SERIALIZABLE_HDF5_FILE added.
|     
|     
|         *** snip ***
|     
|     # ********************************************************************
|     
|     from numpy import *; from numpy.random import randn
|     from shogun.Features import *; from shogun.Classifier import *;
|     from shogun.Kernel import *; from shogun.Library import *;
|     from shogun.PreProc import *
|     
|     num=5; dist=1; dim=10
|     
|     data=concatenate((randn(dim, num), randn(dim, num) + dist,
|                       randn(dim, num) + 2*dist,
|                       randn(dim, num) + 3*dist), axis=1)
|     lab=concatenate((zeros(num), ones(num), 2*ones(num), 3*ones(num)))
|     
|     feats=RealFeatures(data)
|     kernel=GaussianKernel(feats, feats, 2.1)
|     
|     labels=Labels(lab)
|     
|     svm = GMNPSVM(1, kernel, labels)
|     
|     feats.add_preproc(NormOne())
|     feats.add_preproc(LogPlusOne())
|     feats.add_preproc(NormDerivativeLem3())
|     feats.set_preprocessed(1)
|     svm.train(feats)
|     
|     #svm.print_serializable()
|     
|     fstream = SerializableHDF5File("blaah.h5", "w")
|     #fstream = SerializableAsciiFile("blaah.asc", "w")
|     if svm.save_serializable(fstream): print "OK writing\n"
|     else: print "ERROR writing\n"
|     
|     # ********************************************************************
|     
|         *** snap ***
| 
| M	src/libshogun/lib/DynamicArray.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiFile.h
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/libshogun/lib/SerializableFile.h
| A	src/libshogun/lib/SerializableHDF5File.cpp
| A	src/libshogun/lib/SerializableHDF5File.h
| M	src/modular/Library.i
|  
* commit 1660f9cb2f8d03bdfe3e087364baffc833ea09e9
| Author: D. Lehmann <>
| Date:   Wed Oct 27 13:38:03 2010 +0000
| 
|     * src/libshogun/base/DynArray.h:
|     
|       - Fixes a reallocation issue.  Previous implementation is only
|         working because of a good GNU REALLOC implementation.  In the case
|         of DynArray::delete_element() the last element was not longer
|         allocated!  Use mtrace or corresponding tools to check this case.
| 
| M	src/libshogun/base/DynArray.h
|  
* commit f89760476f9f9a68e0b83aed83fb98283e3aa410
| Author: D. Lehmann <>
| Date:   Tue Oct 26 11:26:35 2010 +0000
| 
|     * src/libshogun/base/class_list.cpp.templ:
|     
|       - Closes <4CC5E0D6.5010403@gmail.com>; Thanks to Koen :)
| 
| M	src/libshogun/base/class_list.cpp.templ
|  
* commit da693c0c2a0b5636ea365dd2b85ac4fb0fc7c36d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 26 01:45:50 2010 +0000
| 
|     remaining fixes to allow for huge custom kernels
| 
| M	src/libshogun/kernel/CustomKernel.cpp
| M	src/libshogun/kernel/CustomKernel.h
|  
* commit 45b66cc0e32f134b341bbb65c03762f4e704d481
| Author: D. Lehmann <>
| Date:   Thu Oct 21 00:24:07 2010 +0000
| 
|     * trunk/*
|     
|       - Recovering revision 5093.
| 
| M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| M	src/Makefile.template
| M	src/cmdline/CmdLineInterface.cpp
| M	src/configure
| M	src/libshogun/base/DynArray.h
| M	src/libshogun/base/Parallel.cpp
| M	src/libshogun/base/Parallel.h
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/base/Version.cpp
| M	src/libshogun/base/Version.h
| A	src/libshogun/base/class_list.cpp.sh
| A	src/libshogun/base/class_list.cpp.templ
| A	src/libshogun/base/class_list.h
| M	src/libshogun/base/init.cpp
| M	src/libshogun/base/init.h
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/DistanceMachine.h
| M	src/libshogun/classifier/KNN.h
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/LDA.h
| M	src/libshogun/classifier/LPBoost.h
| M	src/libshogun/classifier/LPM.h
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/SubGradientLPM.h
| M	src/libshogun/classifier/svm/CPLEXSVM.h
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| A	src/libshogun/classifier/svm/GMNPLib.cpp
| A	src/libshogun/classifier/svm/GMNPLib.h
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
| A	src/libshogun/classifier/svm/GNPPLib.cpp
| A	src/libshogun/classifier/svm/GNPPLib.h
| M	src/libshogun/classifier/svm/GNPPSVM.cpp
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.h
| A	src/libshogun/classifier/svm/QPBSVMLib.cpp
| A	src/libshogun/classifier/svm/QPBSVMLib.h
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVMLight.h
| M	src/libshogun/classifier/svm/SVMLightOneClass.h
| M	src/libshogun/classifier/svm/SVMOcas.cpp
| M	src/libshogun/classifier/svm/SVMOcas.h
| M	src/libshogun/classifier/svm/SVMSGD.cpp
| M	src/libshogun/classifier/svm/SVMSGD.h
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.h
| M	src/libshogun/classifier/svm/SubGradientSVM.cpp
| M	src/libshogun/classifier/svm/Tron.h
| M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| M	src/libshogun/classifier/svm/WDSVMOcas.h
| D	src/libshogun/classifier/svm/gmnplib.cpp
| D	src/libshogun/classifier/svm/gmnplib.h
| D	src/libshogun/classifier/svm/gnpplib.cpp
| D	src/libshogun/classifier/svm/gnpplib.h
| D	src/libshogun/classifier/svm/qpbsvmlib.cpp
| D	src/libshogun/classifier/svm/qpbsvmlib.h
| M	src/libshogun/clustering/Hierarchical.h
| M	src/libshogun/clustering/KMeans.h
| M	src/libshogun/distance/HammingWordDistance.cpp
| M	src/libshogun/distance/HammingWordDistance.h
| M	src/libshogun/distance/KernelDistance.cpp
| M	src/libshogun/distance/KernelDistance.h
| M	src/libshogun/distance/MinkowskiMetric.cpp
| M	src/libshogun/distance/MinkowskiMetric.h
| M	src/libshogun/distance/RealDistance.h
| M	src/libshogun/distance/SimpleDistance.h
| M	src/libshogun/distance/SparseDistance.h
| M	src/libshogun/distance/StringDistance.h
| M	src/libshogun/distributions/GHMM.h
| M	src/libshogun/distributions/HMM.cpp
| M	src/libshogun/distributions/HMM.h
| M	src/libshogun/distributions/LinearHMM.cpp
| M	src/libshogun/distributions/LinearHMM.h
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/AttributeFeatures.h
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/DummyFeatures.h
| M	src/libshogun/features/ExplicitSpecFeatures.cpp
| M	src/libshogun/features/ExplicitSpecFeatures.h
| M	src/libshogun/features/FKFeatures.cpp
| M	src/libshogun/features/FKFeatures.h
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/HashedWDFeatures.cpp
| M	src/libshogun/features/HashedWDFeatures.h
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/LBPPyrDotFeatures.cpp
| M	src/libshogun/features/LBPPyrDotFeatures.h
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/PolyFeatures.cpp
| M	src/libshogun/features/PolyFeatures.h
| M	src/libshogun/features/RealFileFeatures.cpp
| M	src/libshogun/features/RealFileFeatures.h
| M	src/libshogun/features/SNPFeatures.cpp
| M	src/libshogun/features/SNPFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/SparsePolyFeatures.cpp
| M	src/libshogun/features/SparsePolyFeatures.h
| M	src/libshogun/features/StringFeatures.cpp
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/TOPFeatures.cpp
| M	src/libshogun/features/TOPFeatures.h
| M	src/libshogun/features/WDFeatures.cpp
| M	src/libshogun/features/WDFeatures.h
| M	src/libshogun/genomic_signals/TrainPredMaster.cpp.orig
| M	src/libshogun/genomic_signals/TrainPredMaster.h
| M	src/libshogun/kernel/AUCKernel.cpp
| M	src/libshogun/kernel/AUCKernel.h
| M	src/libshogun/kernel/Chi2Kernel.cpp
| M	src/libshogun/kernel/Chi2Kernel.h
| M	src/libshogun/kernel/CommWordStringKernel.cpp
| M	src/libshogun/kernel/CommWordStringKernel.h
| M	src/libshogun/kernel/ConstKernel.cpp
| M	src/libshogun/kernel/ConstKernel.h
| M	src/libshogun/kernel/DiagKernel.cpp
| M	src/libshogun/kernel/DiagKernel.h
| M	src/libshogun/kernel/DiceKernelNormalizer.h
| M	src/libshogun/kernel/DistanceKernel.cpp
| M	src/libshogun/kernel/DistanceKernel.h
| M	src/libshogun/kernel/DotKernel.h
| M	src/libshogun/kernel/FixedDegreeStringKernel.cpp
| M	src/libshogun/kernel/FixedDegreeStringKernel.h
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/GaussianMatchStringKernel.cpp
| M	src/libshogun/kernel/GaussianMatchStringKernel.h
| M	src/libshogun/kernel/GaussianShiftKernel.cpp
| M	src/libshogun/kernel/GaussianShiftKernel.h
| M	src/libshogun/kernel/GaussianShortRealKernel.cpp
| M	src/libshogun/kernel/GaussianShortRealKernel.h
| M	src/libshogun/kernel/HistogramIntersectionKernel.cpp
| M	src/libshogun/kernel/HistogramIntersectionKernel.h
| M	src/libshogun/kernel/HistogramWordStringKernel.cpp
| M	src/libshogun/kernel/HistogramWordStringKernel.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/kernel/LocalAlignmentStringKernel.cpp
| M	src/libshogun/kernel/LocalAlignmentStringKernel.h
| M	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/LocalityImprovedStringKernel.h
| M	src/libshogun/kernel/MatchWordStringKernel.cpp
| M	src/libshogun/kernel/MatchWordStringKernel.h
| M	src/libshogun/kernel/MultitaskKernelMaskNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelMaskPairNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
| M	src/libshogun/kernel/OligoStringKernel.cpp
| M	src/libshogun/kernel/OligoStringKernel.h
| M	src/libshogun/kernel/PolyKernel.cpp
| M	src/libshogun/kernel/PolyKernel.h
| M	src/libshogun/kernel/PolyMatchStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchStringKernel.h
| M	src/libshogun/kernel/PolyMatchWordStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchWordStringKernel.h
| M	src/libshogun/kernel/PyramidChi2.cpp
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.h
| M	src/libshogun/kernel/SNPStringKernel.cpp
| M	src/libshogun/kernel/SNPStringKernel.h
| M	src/libshogun/kernel/SalzbergWordStringKernel.cpp
| M	src/libshogun/kernel/SalzbergWordStringKernel.h
| M	src/libshogun/kernel/ScatterKernelNormalizer.h
| M	src/libshogun/kernel/SigmoidKernel.cpp
| M	src/libshogun/kernel/SigmoidKernel.h
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/libshogun/kernel/SparseKernel.h
| M	src/libshogun/kernel/SpectrumMismatchRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumMismatchRBFKernel.h
| M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumRBFKernel.h
| M	src/libshogun/kernel/StringKernel.h
| M	src/libshogun/kernel/TanimotoKernelNormalizer.h
| M	src/libshogun/kernel/TensorProductPairKernel.cpp
| M	src/libshogun/kernel/TensorProductPairKernel.h
| M	src/libshogun/kernel/WeightedCommWordStringKernel.cpp
| M	src/libshogun/kernel/WeightedCommWordStringKernel.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/BinaryStream.h
| M	src/libshogun/lib/BitString.h
| M	src/libshogun/lib/Cache.h
| M	src/libshogun/lib/Compressor.cpp
| M	src/libshogun/lib/Compressor.h
| M	src/libshogun/lib/Cplex.h
| M	src/libshogun/lib/DataType.cpp
| M	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/GCArray.h
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/HDF5File.h
| M	src/libshogun/lib/List.h
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/lib/MemoryMappedFile.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/libshogun/lib/SGSerializable.cpp
| M	src/libshogun/lib/SGSerializable.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiFile.h
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/libshogun/lib/SerializableFile.h
| M	src/libshogun/lib/SimpleFile.h
| M	src/libshogun/lib/Trie.h
| M	src/libshogun/lib/common.h
| M	src/libshogun/lib/io.cpp
| M	src/libshogun/lib/io.h
| M	src/libshogun/lib/memory.cpp
| M	src/libshogun/lib/memory.h
| M	src/libshogun/preproc/DecompressString.h
| M	src/libshogun/preproc/NormDerivativeLem3.cpp
| M	src/libshogun/preproc/NormDerivativeLem3.h
| M	src/libshogun/preproc/PCACut.h
| M	src/libshogun/preproc/StringPreProc.h
| M	src/libshogun/regression/KRR.h
| M	src/libshogun/regression/svr/SVRLight.h
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIHMM.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/SGBase.i
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
|  
* commit 63adb5e671e3eec44614c9977fdc0ae3f6f47b22
| Author: D. Lehmann <>
| Date:   Sat Oct 16 02:05:32 2010 +0000
| 
|     * trunk/*
|     
|       - reverting revisions: 5080, 5081, 5082, 5083, 5084, 5085, 5086,
|         5089, 5090, 5091, 5092, 5093
|     
|     
|     Note: In the following text we mean differences `between revision
|           x-1:x' if we are speaking from `revision difference x'.
|     
|     Since I have loss my state as employee of the `Technical University
|     Berlin - Machine Learning/Intelligent Data Analysis' backdated to
|     September 30, 2010 the following revision differences (of October
|     2010) has COPYRIGHT by `(C) 2010 - Dirk J. Lehmann' and were NEVER be
|     published under the terms of the `GNU General Public License':
|     
|       * <https://svn.tuebingen.mpg.de/shogun> revisions: 5080, 5081, 5082,
|         5083, 5084, 5085, 5086, 5089, 5090, 5091, 5092, 5093
|     
|     These revision differences are NOT ALLOWED to (re-)distribute, neither
|     in source nor in any kind of binary code!  To make sure that you are
|     going legal, please update your source tree either to revision 5079
|     (or previous) or to revision 5094 (or later).
|     
|     Thanks for reading,
|     Dirk Lehmann.
|     
|     PS: Need a job!  If you are interested than send an email to
|         <mailto:jobless.dirk@gmx.de> because I don't know how long my
|         ldirk@mail.tu-... account will be available.
| 
| M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| M	src/Makefile.template
| M	src/cmdline/CmdLineInterface.cpp
| M	src/configure
| M	src/libshogun/base/DynArray.h
| M	src/libshogun/base/Parallel.cpp
| M	src/libshogun/base/Parallel.h
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/base/Version.cpp
| M	src/libshogun/base/Version.h
| D	src/libshogun/base/class_list.cpp.sh
| D	src/libshogun/base/class_list.cpp.templ
| D	src/libshogun/base/class_list.h
| M	src/libshogun/base/init.cpp
| M	src/libshogun/base/init.h
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/DistanceMachine.h
| M	src/libshogun/classifier/KNN.h
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/LDA.h
| M	src/libshogun/classifier/LPBoost.h
| M	src/libshogun/classifier/LPM.h
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/SubGradientLPM.h
| M	src/libshogun/classifier/svm/CPLEXSVM.h
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| D	src/libshogun/classifier/svm/GMNPLib.cpp
| D	src/libshogun/classifier/svm/GMNPLib.h
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
| D	src/libshogun/classifier/svm/GNPPLib.cpp
| D	src/libshogun/classifier/svm/GNPPLib.h
| M	src/libshogun/classifier/svm/GNPPSVM.cpp
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.h
| D	src/libshogun/classifier/svm/QPBSVMLib.cpp
| D	src/libshogun/classifier/svm/QPBSVMLib.h
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVMLight.h
| M	src/libshogun/classifier/svm/SVMLightOneClass.h
| M	src/libshogun/classifier/svm/SVMOcas.cpp
| M	src/libshogun/classifier/svm/SVMOcas.h
| M	src/libshogun/classifier/svm/SVMSGD.cpp
| M	src/libshogun/classifier/svm/SVMSGD.h
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.h
| M	src/libshogun/classifier/svm/SubGradientSVM.cpp
| M	src/libshogun/classifier/svm/Tron.h
| M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| M	src/libshogun/classifier/svm/WDSVMOcas.h
| A	src/libshogun/classifier/svm/gmnplib.cpp
| A	src/libshogun/classifier/svm/gmnplib.h
| A	src/libshogun/classifier/svm/gnpplib.cpp
| A	src/libshogun/classifier/svm/gnpplib.h
| A	src/libshogun/classifier/svm/qpbsvmlib.cpp
| A	src/libshogun/classifier/svm/qpbsvmlib.h
| M	src/libshogun/clustering/Hierarchical.h
| M	src/libshogun/clustering/KMeans.h
| M	src/libshogun/distance/HammingWordDistance.cpp
| M	src/libshogun/distance/HammingWordDistance.h
| M	src/libshogun/distance/KernelDistance.cpp
| M	src/libshogun/distance/KernelDistance.h
| M	src/libshogun/distance/MinkowskiMetric.cpp
| M	src/libshogun/distance/MinkowskiMetric.h
| M	src/libshogun/distance/RealDistance.h
| M	src/libshogun/distance/SimpleDistance.h
| M	src/libshogun/distance/SparseDistance.h
| M	src/libshogun/distance/StringDistance.h
| M	src/libshogun/distributions/GHMM.h
| M	src/libshogun/distributions/HMM.cpp
| M	src/libshogun/distributions/HMM.h
| M	src/libshogun/distributions/LinearHMM.cpp
| M	src/libshogun/distributions/LinearHMM.h
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/AttributeFeatures.h
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/DummyFeatures.h
| M	src/libshogun/features/ExplicitSpecFeatures.cpp
| M	src/libshogun/features/ExplicitSpecFeatures.h
| M	src/libshogun/features/FKFeatures.cpp
| M	src/libshogun/features/FKFeatures.h
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/HashedWDFeatures.cpp
| M	src/libshogun/features/HashedWDFeatures.h
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/LBPPyrDotFeatures.cpp
| M	src/libshogun/features/LBPPyrDotFeatures.h
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/PolyFeatures.cpp
| M	src/libshogun/features/PolyFeatures.h
| M	src/libshogun/features/RealFileFeatures.cpp
| M	src/libshogun/features/RealFileFeatures.h
| M	src/libshogun/features/SNPFeatures.cpp
| M	src/libshogun/features/SNPFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/SparsePolyFeatures.cpp
| M	src/libshogun/features/SparsePolyFeatures.h
| M	src/libshogun/features/StringFeatures.cpp
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/TOPFeatures.cpp
| M	src/libshogun/features/TOPFeatures.h
| M	src/libshogun/features/WDFeatures.cpp
| M	src/libshogun/features/WDFeatures.h
| M	src/libshogun/genomic_signals/TrainPredMaster.cpp.orig
| M	src/libshogun/genomic_signals/TrainPredMaster.h
| M	src/libshogun/kernel/AUCKernel.cpp
| M	src/libshogun/kernel/AUCKernel.h
| M	src/libshogun/kernel/Chi2Kernel.cpp
| M	src/libshogun/kernel/Chi2Kernel.h
| M	src/libshogun/kernel/CommWordStringKernel.cpp
| M	src/libshogun/kernel/CommWordStringKernel.h
| M	src/libshogun/kernel/ConstKernel.cpp
| M	src/libshogun/kernel/ConstKernel.h
| M	src/libshogun/kernel/DiagKernel.cpp
| M	src/libshogun/kernel/DiagKernel.h
| M	src/libshogun/kernel/DiceKernelNormalizer.h
| M	src/libshogun/kernel/DistanceKernel.cpp
| M	src/libshogun/kernel/DistanceKernel.h
| M	src/libshogun/kernel/DotKernel.h
| M	src/libshogun/kernel/FixedDegreeStringKernel.cpp
| M	src/libshogun/kernel/FixedDegreeStringKernel.h
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/GaussianMatchStringKernel.cpp
| M	src/libshogun/kernel/GaussianMatchStringKernel.h
| M	src/libshogun/kernel/GaussianShiftKernel.cpp
| M	src/libshogun/kernel/GaussianShiftKernel.h
| M	src/libshogun/kernel/GaussianShortRealKernel.cpp
| M	src/libshogun/kernel/GaussianShortRealKernel.h
| M	src/libshogun/kernel/HistogramIntersectionKernel.cpp
| M	src/libshogun/kernel/HistogramIntersectionKernel.h
| M	src/libshogun/kernel/HistogramWordStringKernel.cpp
| M	src/libshogun/kernel/HistogramWordStringKernel.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/kernel/LocalAlignmentStringKernel.cpp
| M	src/libshogun/kernel/LocalAlignmentStringKernel.h
| M	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/LocalityImprovedStringKernel.h
| M	src/libshogun/kernel/MatchWordStringKernel.cpp
| M	src/libshogun/kernel/MatchWordStringKernel.h
| M	src/libshogun/kernel/MultitaskKernelMaskNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelMaskPairNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
| M	src/libshogun/kernel/OligoStringKernel.cpp
| M	src/libshogun/kernel/OligoStringKernel.h
| M	src/libshogun/kernel/PolyKernel.cpp
| M	src/libshogun/kernel/PolyKernel.h
| M	src/libshogun/kernel/PolyMatchStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchStringKernel.h
| M	src/libshogun/kernel/PolyMatchWordStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchWordStringKernel.h
| M	src/libshogun/kernel/PyramidChi2.cpp
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.h
| M	src/libshogun/kernel/SNPStringKernel.cpp
| M	src/libshogun/kernel/SNPStringKernel.h
| M	src/libshogun/kernel/SalzbergWordStringKernel.cpp
| M	src/libshogun/kernel/SalzbergWordStringKernel.h
| M	src/libshogun/kernel/ScatterKernelNormalizer.h
| M	src/libshogun/kernel/SigmoidKernel.cpp
| M	src/libshogun/kernel/SigmoidKernel.h
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/libshogun/kernel/SparseKernel.h
| M	src/libshogun/kernel/SpectrumMismatchRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumMismatchRBFKernel.h
| M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumRBFKernel.h
| M	src/libshogun/kernel/StringKernel.h
| M	src/libshogun/kernel/TanimotoKernelNormalizer.h
| M	src/libshogun/kernel/TensorProductPairKernel.cpp
| M	src/libshogun/kernel/TensorProductPairKernel.h
| M	src/libshogun/kernel/WeightedCommWordStringKernel.cpp
| M	src/libshogun/kernel/WeightedCommWordStringKernel.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/BinaryStream.h
| M	src/libshogun/lib/BitString.h
| M	src/libshogun/lib/Cache.h
| M	src/libshogun/lib/Compressor.cpp
| M	src/libshogun/lib/Compressor.h
| M	src/libshogun/lib/Cplex.h
| M	src/libshogun/lib/DataType.cpp
| M	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/GCArray.h
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/HDF5File.h
| M	src/libshogun/lib/List.h
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/lib/MemoryMappedFile.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/libshogun/lib/SGSerializable.cpp
| M	src/libshogun/lib/SGSerializable.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiFile.h
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/libshogun/lib/SerializableFile.h
| M	src/libshogun/lib/SimpleFile.h
| M	src/libshogun/lib/Trie.h
| M	src/libshogun/lib/common.h
| M	src/libshogun/lib/io.cpp
| M	src/libshogun/lib/io.h
| M	src/libshogun/lib/memory.cpp
| M	src/libshogun/lib/memory.h
| M	src/libshogun/preproc/DecompressString.h
| M	src/libshogun/preproc/NormDerivativeLem3.cpp
| M	src/libshogun/preproc/NormDerivativeLem3.h
| M	src/libshogun/preproc/PCACut.h
| M	src/libshogun/preproc/StringPreProc.h
| M	src/libshogun/regression/KRR.h
| M	src/libshogun/regression/svr/SVRLight.h
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIHMM.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/SGBase.i
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
|  
* commit d2247b482d3d9b8d50c5549c416e30871d87f2dd
| Author: D. Lehmann <>
| Date:   Wed Oct 13 16:43:04 2010 +0000
| 
|     * src/libshogun/*
|     
|       - New common type STRING_T added.
|     
|       - New common type MACHINE_INT_T added.
|     
|       - @Soeren: Corrupt memory free'ing fixed in GaussianKernel.
|     
|       - Some minor fixes which could be misuse the stack.
| 
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/class_list.cpp.sh
| M	src/libshogun/base/class_list.cpp.templ
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/lib/DataType.cpp
| M	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/common.h
|  
* commit d6580e061c340b801b6999314bc8849a0538e1ef
| Author: D. Lehmann <>
| Date:   Mon Oct 11 03:11:16 2010 +0000
| 
|     * src/libshogun/*
|     
|       - Saving and loading of GMNPSVM seems to be work.  Test it for your
|         own (consider the files `blaah{,2}.asc' after execution):
|     
|         *** snip ***
|     
|     from numpy import *; from numpy.random import randn
|     from shogun.Features import *; from shogun.Classifier import *;
|     from shogun.Kernel import *; from shogun.Library import *;
|     from shogun.PreProc import *
|     
|     num=5; dist=1;
|     
|     data=concatenate((randn(2,num), randn(2,num) + dist,
|                       randn(2,num) + 2*dist,
|                       randn(2,num) + 3*dist), axis=1)
|     lab=concatenate((zeros(num), ones(num), 2*ones(num), 3*ones(num)))
|     
|     feats=RealFeatures(data)
|     kernel=GaussianKernel(feats, feats, 2.1)
|     
|     labels=Labels(lab)
|     
|     print "*** Begin\n"
|     
|     svm = GMNPSVM(1, kernel, labels)
|     svm.train(feats)
|     
|     svm.print_serializable()
|     
|     fstream = SerializableAsciiFile("blaah.asc", "w")
|     if svm.save_serializable(fstream): print "OK writing\n"
|     else: print "ERROR writing\n"
|     
|     svm = GMNPSVM()
|     #feats = RealFeatures()
|     fstream = SerializableAsciiFile("blaah.asc", "r")
|     if svm.load_serializable(fstream): print "OK reading\n"
|     else: print "ERROR reading\n"
|     
|     fstream = SerializableAsciiFile("blaah2.asc", "w")
|     svm.save_serializable(fstream)
|     
|     print "*** End\n"
|     
|         *** snap ***
| 
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/class_list.cpp.sh
| M	src/libshogun/base/class_list.cpp.templ
| M	src/libshogun/base/class_list.h
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/svm/GMNPLib.cpp
| M	src/libshogun/classifier/svm/GNPPLib.cpp
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.h
| M	src/libshogun/classifier/svm/QPBSVMLib.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVMOcas.cpp
| M	src/libshogun/classifier/svm/SVMSGD.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
| M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| M	src/libshogun/distance/HammingWordDistance.cpp
| M	src/libshogun/distance/KernelDistance.cpp
| M	src/libshogun/distance/MinkowskiMetric.cpp
| M	src/libshogun/distance/SimpleDistance.h
| M	src/libshogun/distance/SparseDistance.h
| M	src/libshogun/distance/StringDistance.h
| M	src/libshogun/distributions/HMM.cpp
| M	src/libshogun/distributions/LinearHMM.cpp
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/DummyFeatures.h
| M	src/libshogun/features/ExplicitSpecFeatures.cpp
| M	src/libshogun/features/FKFeatures.cpp
| M	src/libshogun/features/HashedWDFeatures.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/libshogun/features/LBPPyrDotFeatures.cpp
| M	src/libshogun/features/PolyFeatures.cpp
| M	src/libshogun/features/RealFileFeatures.cpp
| M	src/libshogun/features/SNPFeatures.cpp
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/SparsePolyFeatures.cpp
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/TOPFeatures.cpp
| M	src/libshogun/features/WDFeatures.cpp
| M	src/libshogun/genomic_signals/TrainPredMaster.cpp.orig
| M	src/libshogun/kernel/AUCKernel.cpp
| M	src/libshogun/kernel/Chi2Kernel.cpp
| M	src/libshogun/kernel/CommWordStringKernel.cpp
| M	src/libshogun/kernel/ConstKernel.cpp
| M	src/libshogun/kernel/DiagKernel.cpp
| M	src/libshogun/kernel/DistanceKernel.cpp
| M	src/libshogun/kernel/FixedDegreeStringKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/GaussianMatchStringKernel.cpp
| M	src/libshogun/kernel/GaussianShiftKernel.cpp
| M	src/libshogun/kernel/GaussianShortRealKernel.cpp
| M	src/libshogun/kernel/HistogramIntersectionKernel.cpp
| M	src/libshogun/kernel/HistogramWordStringKernel.cpp
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/kernel/LocalAlignmentStringKernel.cpp
| M	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/MatchWordStringKernel.cpp
| M	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
| M	src/libshogun/kernel/OligoStringKernel.cpp
| M	src/libshogun/kernel/PolyKernel.cpp
| M	src/libshogun/kernel/PolyMatchStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchWordStringKernel.cpp
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
| M	src/libshogun/kernel/SNPStringKernel.cpp
| M	src/libshogun/kernel/SalzbergWordStringKernel.cpp
| M	src/libshogun/kernel/ScatterKernelNormalizer.h
| M	src/libshogun/kernel/SigmoidKernel.cpp
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/SparseKernel.h
| M	src/libshogun/kernel/SpectrumMismatchRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| M	src/libshogun/kernel/StringKernel.h
| M	src/libshogun/kernel/TensorProductPairKernel.cpp
| M	src/libshogun/kernel/WeightedCommWordStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/BitString.h
| M	src/libshogun/lib/Cache.h
| M	src/libshogun/lib/Compressor.cpp
| M	src/libshogun/lib/DataType.cpp
| M	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/GCArray.h
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/List.h
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/lib/MemoryMappedFile.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/libshogun/lib/SGSerializable.cpp
| M	src/libshogun/lib/SGSerializable.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiFile.h
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/libshogun/lib/SerializableFile.h
| M	src/libshogun/lib/SimpleFile.h
| M	src/libshogun/lib/Trie.h
| M	src/libshogun/lib/io.h
| M	src/libshogun/preproc/DecompressString.h
| M	src/libshogun/preproc/StringPreProc.h
|  
* commit f26b12b6460da90d70eb568fba8811705d75100c
| Author: D. Lehmann <>
| Date:   Fri Oct 8 21:29:45 2010 +0000
| 
|     * src/*
|     
|       - Removing `C' prefix from class-names which are not inheriting from
|         CSG_SERIALIZBABLE.
|     
|       - Moving files which are implementing classes of the scheme `class
|         C??? :public CSGSerializable' to `???.{h,cpp}'.
|     
|       - Adding default constructors for classes which are inheriting from
|         CSG_SERIALIZBABLE (highly development state; parts where generated
|         by scripts!!!).
|     
|       - Marking classes which are depending on system configuration as
|         IGNORE_IN_CLASSLIST.
|     
|     * Ready for implementing HDF5 and much bug reports ;P ...  Let's go...
| 
| M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| M	src/cmdline/CmdLineInterface.cpp
| M	src/libshogun/base/DynArray.h
| M	src/libshogun/base/Parallel.cpp
| M	src/libshogun/base/Parallel.h
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/base/Version.cpp
| M	src/libshogun/base/Version.h
| M	src/libshogun/base/class_list.cpp.sh
| M	src/libshogun/base/init.cpp
| M	src/libshogun/base/init.h
| M	src/libshogun/classifier/DistanceMachine.h
| M	src/libshogun/classifier/KNN.h
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/LDA.h
| M	src/libshogun/classifier/LPBoost.h
| M	src/libshogun/classifier/LPM.h
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/SubGradientLPM.h
| M	src/libshogun/classifier/svm/CPLEXSVM.h
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| A	src/libshogun/classifier/svm/GMNPLib.cpp
| A	src/libshogun/classifier/svm/GMNPLib.h
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
| A	src/libshogun/classifier/svm/GNPPLib.cpp
| A	src/libshogun/classifier/svm/GNPPLib.h
| M	src/libshogun/classifier/svm/GNPPSVM.cpp
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.h
| A	src/libshogun/classifier/svm/QPBSVMLib.cpp
| A	src/libshogun/classifier/svm/QPBSVMLib.h
| M	src/libshogun/classifier/svm/SVMLight.h
| M	src/libshogun/classifier/svm/SVMLightOneClass.h
| M	src/libshogun/classifier/svm/SVMOcas.cpp
| M	src/libshogun/classifier/svm/SVMOcas.h
| M	src/libshogun/classifier/svm/SVMSGD.cpp
| M	src/libshogun/classifier/svm/SVMSGD.h
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.h
| M	src/libshogun/classifier/svm/SubGradientSVM.cpp
| M	src/libshogun/classifier/svm/Tron.h
| M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| M	src/libshogun/classifier/svm/WDSVMOcas.h
| D	src/libshogun/classifier/svm/gmnplib.cpp
| D	src/libshogun/classifier/svm/gmnplib.h
| D	src/libshogun/classifier/svm/gnpplib.cpp
| D	src/libshogun/classifier/svm/gnpplib.h
| D	src/libshogun/classifier/svm/qpbsvmlib.cpp
| D	src/libshogun/classifier/svm/qpbsvmlib.h
| M	src/libshogun/clustering/Hierarchical.h
| M	src/libshogun/clustering/KMeans.h
| M	src/libshogun/distance/HammingWordDistance.cpp
| M	src/libshogun/distance/HammingWordDistance.h
| M	src/libshogun/distance/KernelDistance.cpp
| M	src/libshogun/distance/KernelDistance.h
| M	src/libshogun/distance/MinkowskiMetric.cpp
| M	src/libshogun/distance/MinkowskiMetric.h
| M	src/libshogun/distance/RealDistance.h
| M	src/libshogun/distributions/GHMM.h
| M	src/libshogun/distributions/HMM.cpp
| M	src/libshogun/distributions/HMM.h
| M	src/libshogun/distributions/LinearHMM.cpp
| M	src/libshogun/distributions/LinearHMM.h
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/AttributeFeatures.h
| M	src/libshogun/features/DummyFeatures.h
| M	src/libshogun/features/ExplicitSpecFeatures.cpp
| M	src/libshogun/features/ExplicitSpecFeatures.h
| M	src/libshogun/features/FKFeatures.cpp
| M	src/libshogun/features/FKFeatures.h
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/HashedWDFeatures.cpp
| M	src/libshogun/features/HashedWDFeatures.h
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/LBPPyrDotFeatures.cpp
| M	src/libshogun/features/LBPPyrDotFeatures.h
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/PolyFeatures.cpp
| M	src/libshogun/features/PolyFeatures.h
| M	src/libshogun/features/RealFileFeatures.cpp
| M	src/libshogun/features/RealFileFeatures.h
| M	src/libshogun/features/SNPFeatures.cpp
| M	src/libshogun/features/SNPFeatures.h
| M	src/libshogun/features/SparsePolyFeatures.cpp
| M	src/libshogun/features/SparsePolyFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/TOPFeatures.cpp
| M	src/libshogun/features/TOPFeatures.h
| M	src/libshogun/features/WDFeatures.cpp
| M	src/libshogun/features/WDFeatures.h
| M	src/libshogun/genomic_signals/TrainPredMaster.cpp.orig
| M	src/libshogun/genomic_signals/TrainPredMaster.h
| M	src/libshogun/kernel/AUCKernel.cpp
| M	src/libshogun/kernel/AUCKernel.h
| M	src/libshogun/kernel/Chi2Kernel.cpp
| M	src/libshogun/kernel/Chi2Kernel.h
| M	src/libshogun/kernel/CommWordStringKernel.cpp
| M	src/libshogun/kernel/CommWordStringKernel.h
| M	src/libshogun/kernel/ConstKernel.cpp
| M	src/libshogun/kernel/ConstKernel.h
| M	src/libshogun/kernel/DiagKernel.cpp
| M	src/libshogun/kernel/DiagKernel.h
| M	src/libshogun/kernel/DiceKernelNormalizer.h
| M	src/libshogun/kernel/DistanceKernel.cpp
| M	src/libshogun/kernel/DistanceKernel.h
| M	src/libshogun/kernel/DotKernel.h
| M	src/libshogun/kernel/FixedDegreeStringKernel.cpp
| M	src/libshogun/kernel/FixedDegreeStringKernel.h
| M	src/libshogun/kernel/GaussianMatchStringKernel.cpp
| M	src/libshogun/kernel/GaussianMatchStringKernel.h
| M	src/libshogun/kernel/GaussianShiftKernel.cpp
| M	src/libshogun/kernel/GaussianShiftKernel.h
| M	src/libshogun/kernel/GaussianShortRealKernel.cpp
| M	src/libshogun/kernel/GaussianShortRealKernel.h
| M	src/libshogun/kernel/HistogramIntersectionKernel.cpp
| M	src/libshogun/kernel/HistogramIntersectionKernel.h
| M	src/libshogun/kernel/HistogramWordStringKernel.cpp
| M	src/libshogun/kernel/HistogramWordStringKernel.h
| M	src/libshogun/kernel/LocalAlignmentStringKernel.cpp
| M	src/libshogun/kernel/LocalAlignmentStringKernel.h
| M	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/LocalityImprovedStringKernel.h
| M	src/libshogun/kernel/MatchWordStringKernel.cpp
| M	src/libshogun/kernel/MatchWordStringKernel.h
| M	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
| M	src/libshogun/kernel/OligoStringKernel.cpp
| M	src/libshogun/kernel/OligoStringKernel.h
| M	src/libshogun/kernel/PolyKernel.cpp
| M	src/libshogun/kernel/PolyKernel.h
| M	src/libshogun/kernel/PolyMatchStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchStringKernel.h
| M	src/libshogun/kernel/PolyMatchWordStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchWordStringKernel.h
| M	src/libshogun/kernel/PyramidChi2.cpp
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.h
| M	src/libshogun/kernel/SNPStringKernel.cpp
| M	src/libshogun/kernel/SNPStringKernel.h
| M	src/libshogun/kernel/SalzbergWordStringKernel.cpp
| M	src/libshogun/kernel/SalzbergWordStringKernel.h
| M	src/libshogun/kernel/ScatterKernelNormalizer.h
| M	src/libshogun/kernel/SigmoidKernel.cpp
| M	src/libshogun/kernel/SigmoidKernel.h
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/libshogun/kernel/SpectrumMismatchRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumMismatchRBFKernel.h
| M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumRBFKernel.h
| M	src/libshogun/kernel/TanimotoKernelNormalizer.h
| M	src/libshogun/kernel/TensorProductPairKernel.cpp
| M	src/libshogun/kernel/TensorProductPairKernel.h
| M	src/libshogun/kernel/WeightedCommWordStringKernel.cpp
| M	src/libshogun/kernel/WeightedCommWordStringKernel.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/BitString.h
| M	src/libshogun/lib/Compressor.cpp
| M	src/libshogun/lib/Compressor.h
| M	src/libshogun/lib/Cplex.h
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/HDF5File.h
| M	src/libshogun/lib/MemoryMappedFile.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/libshogun/lib/SGSerializable.cpp
| M	src/libshogun/lib/SGSerializable.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/io.cpp
| M	src/libshogun/lib/io.h
| M	src/libshogun/lib/memory.cpp
| M	src/libshogun/lib/memory.h
| M	src/libshogun/preproc/NormDerivativeLem3.cpp
| M	src/libshogun/preproc/NormDerivativeLem3.h
| M	src/libshogun/preproc/NormOne.h
| M	src/libshogun/preproc/PCACut.h
| M	src/libshogun/regression/KRR.h
| M	src/libshogun/regression/svr/SVRLight.h
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIHMM.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/SGBase.i
|  
* commit 80317fcd4b3c875e27e986e1a1ee6b37c8824b64
| Author: D. Lehmann <>
| Date:   Thu Oct 7 14:50:50 2010 +0000
| 
|     * src/libshogun/lib/*
|     
|       - Some minor fixes to prevent segmentation faults during reading
|         corrupt file formats.
|     
|     * src/libshogun/base/class_list.*
|     
|       - License stuff added.
| 
| M	src/libshogun/base/class_list.cpp.sh
| M	src/libshogun/base/class_list.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/SGSerializable.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
|  
* commit 9f0613a8d80301e55c08e1d72445a1acd26ebf1a
| Author: D. Lehmann <>
| Date:   Wed Oct 6 19:45:29 2010 +0000
| 
|     ATTENTION: Reconfiguring of your source tree is required after this
|                update!
|     
|     The mechanism for serialization should now be powerful enough to adapt
|     the remaining code and implement other kinds of
|     SERIALIZABLE_ASCII_FILE's.  So it's the best time for any kinds of
|     reports to this topic, in example to the mailing list.  A simple
|     Python snippet to feel what's going on [after execution take a look to
|     the file `blaah.asc' and `blaah2.asc'...  A `diff' of these should be
|     hopefully an empty string ;) ]:
|     
|       *** snip ***
|     
|     from numpy import *; from numpy.random import randn
|     from Features import *; from Classifier import *
|     from Kernel import *; from Library import *
|     from PreProc import *
|     
|     num=1000; dist=1;
|     
|     data=concatenate((randn(2,num)-dist, randn(2,num)+dist), axis=1)
|     lab=concatenate((-ones(num), ones(num)));
|     
|     feats=RealFeatures(data);
|     kernel=GaussianKernel(feats, feats, 2.1);
|     
|     labels=Labels(lab);
|     
|     print "*** Begin\n"
|     
|     svm = GMNPSVM(1, kernel, labels)
|     feats.add_preproc(NormOne())
|     feats.add_preproc(NormOne())
|     feats.add_preproc(NormOne())
|     
|     feats.print_serializable()
|     
|     fstream = SerializableAsciiFile("blaah.asc", "w")
|     if feats.save_serializable(fstream): print "OK writing\n"
|     else: print "ERROR writing\n"
|     
|     #svm = GMNPSVM()
|     feats = RealFeatures()
|     fstream = SerializableAsciiFile("blaah.asc", "r")
|     if feats.load_serializable(fstream): print "OK reading\n"
|     else: print "ERROR reading\n"
|     
|     fstream = SerializableAsciiFile("blaah2.asc", "w")
|     feats.save_serializable(fstream)
|     
|     print "*** End\n"
|     
|       *** snap ***
| 
| M	src/Makefile.template
| M	src/configure
| M	src/libshogun/base/SGObject.h
| A	src/libshogun/base/class_list.cpp.sh
| A	src/libshogun/base/class_list.cpp.templ
| A	src/libshogun/base/class_list.h
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/genomic_signals/TrainPredMaster.h
| M	src/libshogun/kernel/MultitaskKernelMaskNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelMaskPairNormalizer.h
| M	src/libshogun/lib/BinaryStream.h
| M	src/libshogun/lib/BitString.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/libshogun/lib/SGSerializable.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiFile.h
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/libshogun/lib/SerializableFile.h
| M	src/libshogun/preproc/NormOne.h
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
|  
* commit 9b1cc372c693b8e9cae01376740083493a28a22b
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Tue Oct 5 14:50:43 2010 +0000
| 
|     added missing #ifdef HAVE_LAPACK to allow compiling shogun in absence of Lapack
| 
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
|  
* commit af70bb3c0490522732fe41d5dc02f69e03082005
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 5 14:39:05 2010 +0000
| 
|     add HistogramIntersectionKernel written by Koen van de Sande
| 
| A	src/libshogun/kernel/HistogramIntersectionKernel.cpp
| A	src/libshogun/kernel/HistogramIntersectionKernel.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/modular/Kernel.i
|  
* commit 69545a6faab2dc1b7ad4d692cd411f4b07cd6177
| Author: D. Lehmann <>
| Date:   Tue Oct 5 14:16:01 2010 +0000
| 
|     * src/libshogun/*
|     
|       - Backup before greater structure changes.
| 
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
|  
* commit 97ae53a4039ffdb87e8e217410c6f163c1870803
| Author: D. Lehmann <>
| Date:   Mon Oct 4 18:47:14 2010 +0000
| 
|     * src/libshogun/lib/Parameter.cpp
|     
|       - EXIT()'s removed.
| 
| M	src/libshogun/lib/Parameter.cpp
|  
* commit 3e8af63fd7a75731c3ebeea113b7da7d5f38980f
| Author: D. Lehmann <>
| Date:   Mon Oct 4 18:25:17 2010 +0000
| 
|     * src/libshogun/lib/Parameter.cpp
|     
|       - Right error message after structure change.
| 
| M	src/libshogun/lib/Parameter.cpp
|  
* commit 0fb3a7874a81324500c855d667159aaa419a27ac
| Author: D. Lehmann <>
| Date:   Mon Oct 4 18:12:37 2010 +0000
| 
|     * src/libshogun/*
|     
|       - Loading and saving to CSGSERIAL_ASCII_FILE seems to be work for
|         non-abstract classes.
|     
|       - Templates for CPARAMETER::ADD*() removed, we are using overloading
|         instead.
| 
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiFile.h
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/libshogun/lib/SerializableFile.h
|  
* commit 1fa36982a728f2e14c179b39be4f38f1f2662125
| Author: D. Lehmann <>
| Date:   Mon Oct 4 10:20:04 2010 +0000
| 
|     * src/libshogun/*
|     
|       - !Reloading! into/from SERIALIZABLE_ASCII_FILE seems to be work.
| 
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/lib/DataType.cpp
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiFile.h
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/libshogun/lib/SerializableFile.h
|  
* commit 94b6ed8a4928133c88b75e7370a55cb0cb2afa60
| Author: D. Lehmann <>
| Date:   Mon Oct 4 01:54:59 2010 +0000
| 
|     * src/libshogun/base/init.cpp
|     
|       - locale fix of revision 5034 completed ;P ...
| 
| M	src/libshogun/base/init.cpp
|  
* commit 2196ff569fe7ae0973fc42c2953a7ea94758c3ae
| Author: D. Lehmann <>
| Date:   Fri Oct 1 13:34:05 2010 +0000
| 
|     * src/*
|     
|       - We are using templates to add Parameters to support generic
|         classes...  In the future we can use overloading instead.  Sorry
|         for defiance :((
|     
|       - Backup and Weekend =) ...
| 
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/StringFeatures.cpp
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/DataType.cpp
| M	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
|  
* commit fb612a1639c23067ae5cd46ffb9e7f4a24d944ed
| Author: D. Lehmann <>
| Date:   Thu Sep 30 13:21:16 2010 +0000
| 
|     * src/libshogun/features/Labels.{h,cpp}
|     
|       - Reverting to revision 5067.
| 
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
|  
* commit 9057b3b8d44d3471a259b482c1557e4605aa8bc9
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Sep 30 12:30:35 2010 +0000
| 
|     commented out code for hot start
| 
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
|  
* commit 819e69aca214eaa59ee7a6c45fff640528c88c68
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Sep 30 12:24:57 2010 +0000
| 
|     adapted solver type
| 
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
|  
* commit 00ca15614d9da5c1a94fcab889335faddeeaa0e0
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Wed Sep 29 15:55:31 2010 +0000
| 
|     added regtrick for liblinear
| 
| M	src/libshogun/classifier/Classifier.h
| A	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| A	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/SVM_linear.h
| M	src/modular/Classifier.i
|  
* commit 175e7a89b4f880fd6df453c1daa1c8e03b145650
| Author: D. Lehmann <>
| Date:   Wed Sep 29 15:02:47 2010 +0000
| 
|     * src/*
|     
|      - Reverting wrong changes of revision 5074.
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/HDF5File.cpp
| M	src/matlab/MatlabInterface.cpp
| M	src/modular/Features.i
| M	src/octave/OctaveInterface.cpp
| M	src/octave_modular/swig_typemaps.i
| M	src/python/PythonInterface.cpp
| M	src/python_modular/swig_typemaps.i
| M	src/r/RInterface.cpp
|  
* commit 1b70e91139aa4911062fb2468c76f6b9a8e980c0
| Author: D. Lehmann <>
| Date:   Wed Sep 29 14:33:16 2010 +0000
| 
|     * src/*
|     
|       - Renaming of `T_STRING' to `CSGString' done.
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/cmdline/CmdLineInterface.h
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/StringFeatures.cpp
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/StringFileFeatures.h
| M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumRBFKernel.h
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/File.cpp
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/HDF5File.h
| M	src/libshogun/lib/LibSVMFile.h
| M	src/libshogun/structure/PlifMatrix.cpp
| M	src/libshogun/structure/PlifMatrix.h
| M	src/libshogunui/GUIFeatures.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/matlab/MatlabInterface.cpp
| M	src/matlab/MatlabInterface.h
| M	src/modular/Features.i
| M	src/modular/Structure.i
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| M	src/octave_modular/swig_typemaps.i
| M	src/python/PythonInterface.cpp
| M	src/python/PythonInterface.h
| M	src/python_modular/swig_typemaps.i
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
| M	src/r_modular/swig_typemaps.i
|  
* commit aac6cdacf7bf1c1982d6d5465111d3e00ee9cd5a
| Author: D. Lehmann <>
| Date:   Wed Sep 29 14:18:58 2010 +0000
| 
|     * src/*
|     
|       - Backup before renaming `T_STRING' to `CSGString'.
| 
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/DataType.cpp
| M	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| A	src/libshogun/lib/SGSerializable.cpp
| A	src/libshogun/lib/SGSerializable.h
| D	src/libshogun/lib/SerialAsciiFile.cpp
| D	src/libshogun/lib/SerialAsciiFile.h
| D	src/libshogun/lib/SerialFile.cpp
| D	src/libshogun/lib/SerialFile.h
| A	src/libshogun/lib/SerializableAsciiFile.cpp
| A	src/libshogun/lib/SerializableAsciiFile.h
| A	src/libshogun/lib/SerializableFile.cpp
| A	src/libshogun/lib/SerializableFile.h
| M	src/modular/Library.i
| M	src/modular/SGBase.i
|    
*   commit 26190777f0dc4913362db90d7ebeb28768409408
|\  Merge: 1fe5d31 b7d035a
| | Author: D. Lehmann <>
| | Date:   Wed Sep 29 10:38:04 2010 +0000
| | 
| |     * src/libshogun/
| |     
| |       - Backup before new class `SGSerializable'.
| |     
| |     * src/modular/Library.i
| |     
| |       - `SerialAsciiFile' added.
| |   
* | commit 1fe5d3142c5d2d5b623e0e13d7044efc48a79379
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Sep 27 12:23:14 2010 +0000
| | 
| |     improve example for labels
| | 
| | M	examples/undocumented/python_modular/features_io_modular.py
| |     
* |   commit f0c2856c5984590b27a3bd8cca4c6c3d424cecae
|\ \  Merge: 337b2c8 b7d035a
| |/  Author: D. Lehmann <>
| |   Date:   Fri Sep 24 10:32:12 2010 +0000
| |   
| |       * src/python/PythonInterface.{h,cpp}
| |       
| |         - Include path changed.
| |       
| |       * src/cmdline/CmdLineInterface.{h,cpp}
| |       
| |         - Include path changed.
| |       
| |       * src/libshogun/*
| |       
| |         - New TSGDatatype structure and related migrated code.
| |       
| |         - New methods: SGObject::serial_print(), SGObject::serial_save(),
| |           SGObject::serial_load()
| |       
| |         - No semantic API changes.
| |   
| * commit b7d035aaff52f370597bc1c2c9c82dc26c83e164
| | Author: D. Lehmann <>
| | Date:   Mon Sep 20 11:16:03 2010 +0000
| | 
| |     * parameter/src/libshogun/lib/*
| |     
| |       - Compiles on systems where the feature test estimates HAVE_HDF5.
| | 
| | M	src/libshogun/lib/AsciiFile.h
| | M	src/libshogun/lib/HDF5File.cpp
| | M	src/libshogun/lib/HDF5File.h
| |   
| * commit 80288d4f339ff71f6fe2d9a6b4cac9774ff901dd
| | Author: D. Lehmann <>
| | Date:   Sun Sep 19 23:44:21 2010 +0000
| | 
| |     * parameter/*
| |     
| |       - Writing of AsciiFile seems to work with primitive datatypes and
| |         `CSGObject's under python_modular binding :DD
| | 
| | M	src/libshogun/base/SGObject.cpp
| | M	src/libshogun/base/SGObject.h
| | M	src/libshogun/classifier/Classifier.h
| | M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| | M	src/libshogun/classifier/svm/MultiClassSVM.h
| | M	src/libshogun/classifier/svm/SVM.cpp
| | M	src/libshogun/classifier/svm/SVM.h
| | M	src/libshogun/lib/AsciiFile.cpp
| | M	src/libshogun/lib/AsciiFile.h
| | M	src/libshogun/lib/DataType.h
| | M	src/libshogun/lib/File.cpp
| | M	src/libshogun/lib/File.h
| | M	src/libshogun/lib/Parameter.cpp
| | M	src/libshogun/lib/Parameter.h
| | M	src/libshogun/lib/common.h
| |   
| * commit 32058f6928ad847af7c804c09e6128697eebb204
| | Author: D. Lehmann <>
| | Date:   Sat Sep 18 21:20:43 2010 +0000
| | 
| |     * parameter/*
| |     
| |       - Minor fixes ...  bedtime =)
| | 
| | M	src/libshogun/lib/Parameter.cpp
| |   
| * commit 9819e55cca8962ba3bc259474123d5572b3baea6
| | Author: D. Lehmann <>
| | Date:   Sat Sep 18 20:56:44 2010 +0000
| | 
| |     * parameter/*
| |     
| |       - Adding of primitive scalar parameters and CSGObjects seems to be
| |         work.
| |     
| |       - New public method `CSGObject::params_list(const char* prefix="")'
| |         added!
| | 
| | A	src/libshogun/base/DynArray.h
| | M	src/libshogun/base/SGObject.cpp
| | M	src/libshogun/base/SGObject.h
| | M	src/libshogun/classifier/KernelMachine.cpp
| | M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| | M	src/libshogun/classifier/svm/MultiClassSVM.h
| | M	src/libshogun/classifier/svm/SVM.cpp
| | M	src/libshogun/kernel/Kernel.cpp
| | M	src/libshogun/kernel/Kernel.h
| | M	src/libshogun/kernel/KernelNormalizer.h
| | M	src/libshogun/lib/DataType.h
| | M	src/libshogun/lib/DynamicArray.h
| | M	src/libshogun/lib/Parameter.cpp
| | M	src/libshogun/lib/Parameter.h
| |   
| * commit 187277516a71d8afe4ce575039484c034a4da72b
| | Author: D. Lehmann <>
| | Date:   Sat Sep 18 10:39:20 2010 +0000
| | 
| |     * parameter/*
| |     
| |       - python_modular compiles
| | 
| | M	src/libshogun/classifier/svm/SVM.cpp
| | A	src/libshogun/lib/AsciiFile.cpp
| | A	src/libshogun/lib/AsciiFile.h
| | A	src/libshogun/lib/BinaryFile.cpp
| | A	src/libshogun/lib/BinaryFile.h
| | A	src/libshogun/lib/HDF5File.cpp
| | A	src/libshogun/lib/HDF5File.h
| | M	src/libshogun/lib/Parameter.cpp
| | M	src/libshogun/lib/Parameter.h
| |   
| * commit 126073dc0a06c5ca94e0d05f25ab26ee13b386ed
| | Author: D. Lehmann <>
| | Date:   Fri Sep 17 14:54:09 2010 +0000
| | 
| |     * parameter/* backup
| |     
| |       - compiles
| | 
| | M	src/libshogun/features/Labels.cpp
| | M	src/libshogun/features/SimpleFeatures.h
| | M	src/libshogun/features/SparseFeatures.h
| | M	src/libshogun/features/StringFeatures.h
| | M	src/libshogun/kernel/Kernel.cpp
| | M	src/libshogun/lib/DataType.h
| | M	src/libshogun/lib/Parameter.h
| |   
| * commit eec4c0edc7364e5432c951ef30f4bf2e4a799086
| | Author: D. Lehmann <>
| | Date:   Fri Sep 17 11:57:48 2010 +0000
| | 
| |     * parameter/libshogun/*
| |     
| |       - Initial checkin of current work.
| | 
| | M	src/libshogun/base/SGObject.cpp
| | M	src/libshogun/base/SGObject.h
| | M	src/libshogun/classifier/svm/SVM.cpp
| | M	src/libshogun/classifier/svm/SVM.h
| | D	src/libshogun/lib/AsciiFile.cpp
| | D	src/libshogun/lib/AsciiFile.h
| | D	src/libshogun/lib/BinaryFile.cpp
| | D	src/libshogun/lib/BinaryFile.h
| | M	src/libshogun/lib/DataType.h
| | M	src/libshogun/lib/File.cpp
| | M	src/libshogun/lib/File.h
| | D	src/libshogun/lib/HDF5File.cpp
| | D	src/libshogun/lib/HDF5File.h
| | M	src/libshogun/lib/Parameter.cpp
| | M	src/libshogun/lib/Parameter.h
| |   
* | commit 337b2c8dcbb0c91407c5ab41788cf09e47dcb419
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Thu Sep 23 06:37:37 2010 +0000
|   
|       ensure that svmlight is run without linadd for scatter svm
|   
|   M	src/libshogun/classifier/svm/ScatterSVM.cpp
|  
* commit 2cbec7a53e4678baf4f97223b0ed93cc3c75386a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 17 09:51:01 2010 +0000
| 
|     enable L1 regularized liblinear
| 
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 004faac5c0da2e6e7715499609f13219b761aa92
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 15 15:30:53 2010 +0000
| 
|     simplify kernel print cases and remove default case
| 
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit d3f02f4f71b9de7b86ed817bdfb3483ba2bc9641
| Author: D. Lehmann <>
| Date:   Wed Sep 15 13:48:23 2010 +0000
| 
|     * src/libshogunui/*
|     
|       - Fixes compile probelems since revision 5054
| 
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit 8067370dad840ec660ca57dfbd445a54d44637f5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 14 20:14:59 2010 +0000
| 
|     fix tests for sparse*kernels
| 
| M	testsuite/data/kernel/SparseGaussian_10_17.m
| M	testsuite/data/kernel/SparseLinear_fnord.m
| M	testsuite/data/kernel/SparsePoly_3_10_False.m
| M	testsuite/data/kernel/SparsePoly_3_10_True.m
|  
* commit fff2fec234c74d05a7a5db4deddcfcbf8cf0a7a3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 14 20:14:43 2010 +0000
| 
|     get svrlight to work again
| 
| M	src/modular/Regression.i
|  
* commit 2b92b29862e6c0ba773c6a6ffd09705d1096b913
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 14 12:07:30 2010 +0000
| 
|     convert gaussian/poly/linear kernel to dotfeatures and get rid of features type/class specific obsolete sparse*{gaussian,poly,linear}kernels (that are now handled nicely in the gaussian/poly/linear) ones.
| 
| M	examples/undocumented/python_modular/kernel_gaussian_modular.py
| M	examples/undocumented/python_modular/kernel_linear_byte_modular.py
| M	examples/undocumented/python_modular/kernel_linear_word_modular.py
| M	examples/undocumented/python_modular/kernel_sparse_gaussian_modular.py
| M	examples/undocumented/python_modular/kernel_sparse_linear_modular.py
| M	examples/undocumented/python_modular/kernel_sparse_poly_modular.py
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/kernel/DotKernel.h
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/GaussianShiftKernel.h
| M	src/libshogun/kernel/LinearKernel.cpp
| M	src/libshogun/kernel/LinearKernel.h
| M	src/libshogun/kernel/PolyKernel.cpp
| M	src/libshogun/kernel/PolyKernel.h
| M	src/libshogun/kernel/SigmoidKernel.cpp
| M	src/libshogun/kernel/SigmoidKernel.h
| D	src/libshogun/kernel/SparseGaussianKernel.cpp
| D	src/libshogun/kernel/SparseGaussianKernel.h
| D	src/libshogun/kernel/SparseLinearKernel.cpp
| D	src/libshogun/kernel/SparseLinearKernel.h
| D	src/libshogun/kernel/SparsePolyKernel.cpp
| D	src/libshogun/kernel/SparsePolyKernel.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/modular/Kernel.i
| M	testsuite/data/kernel/LinearByte_RAWBYTE_60.m
| M	testsuite/data/kernel/LinearWord_fnord.m
|  
* commit a1ed05bf2b00251a25d85f994a631b3341323226
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 14 07:24:09 2010 +0000
| 
|     - drop CSimpleKernel and introduce CDotKernel as its base class: This way all dot-product based kernels can be applied on top of DotFeatures. For example, now only a single implementation of the linear and polynomial kernel is required to support all kinds of feature types (dense/sparse/... byte/float/...). This required an API change in CDotFeatures' dot() function.
|     - add initial code for sparse spatial sample string kernel (not yet working)
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/SVM_linear.cpp
| M	src/libshogun/classifier/svm/SubGradientSVM.cpp
| M	src/libshogun/features/CombinedDotFeatures.cpp
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/ExplicitSpecFeatures.cpp
| M	src/libshogun/features/ExplicitSpecFeatures.h
| M	src/libshogun/features/HashedWDFeatures.cpp
| M	src/libshogun/features/HashedWDFeatures.h
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/LBPPyrDotFeatures.cpp
| M	src/libshogun/features/LBPPyrDotFeatures.h
| M	src/libshogun/features/PolyFeatures.cpp
| M	src/libshogun/features/PolyFeatures.h
| M	src/libshogun/features/SNPFeatures.cpp
| M	src/libshogun/features/SNPFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/SparsePolyFeatures.cpp
| M	src/libshogun/features/SparsePolyFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/WDFeatures.cpp
| M	src/libshogun/features/WDFeatures.h
| M	src/libshogun/kernel/AUCKernel.cpp
| M	src/libshogun/kernel/AUCKernel.h
| M	src/libshogun/kernel/Chi2Kernel.cpp
| M	src/libshogun/kernel/Chi2Kernel.h
| A	src/libshogun/kernel/DotKernel.h
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/GaussianShortRealKernel.cpp
| M	src/libshogun/kernel/GaussianShortRealKernel.h
| M	src/libshogun/kernel/Kernel.h
| D	src/libshogun/kernel/LinearByteKernel.cpp
| D	src/libshogun/kernel/LinearByteKernel.h
| M	src/libshogun/kernel/LinearKernel.cpp
| M	src/libshogun/kernel/LinearKernel.h
| D	src/libshogun/kernel/LinearWordKernel.cpp
| D	src/libshogun/kernel/LinearWordKernel.h
| M	src/libshogun/kernel/PolyKernel.cpp
| M	src/libshogun/kernel/PolyKernel.h
| M	src/libshogun/kernel/PyramidChi2.cpp
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogun/kernel/SigmoidKernel.cpp
| M	src/libshogun/kernel/SigmoidKernel.h
| D	src/libshogun/kernel/SimpleKernel.cpp
| D	src/libshogun/kernel/SimpleKernel.h
| A	src/libshogun/kernel/SparseSpatialSampleStringKernel.cpp
| A	src/libshogun/kernel/SparseSpatialSampleStringKernel.h
| M	src/libshogun/kernel/TensorProductPairKernel.cpp
| M	src/libshogun/kernel/TensorProductPairKernel.h
| M	src/libshogun/kernel/WeightedDegreeRBFKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeRBFKernel.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/modular/Kernel.i
|  
* commit 380480814df1e3f524d49a711c44278a15209b91
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 10 15:58:14 2010 +0000
| 
|     add toy data
| 
| A	data
|  
* commit 3133bd7400707d2df25fcfc87b12c4d0b5796f79
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 6 11:21:19 2010 +0000
| 
|     move ocr demo also to applications
| 
| A	applications/ocr/Ai.py
| A	applications/ocr/FigureWidget.py
| A	applications/ocr/MatrixWidget.py
| A	applications/ocr/QuadrWidget.py
| A	applications/ocr/README
| A	applications/ocr/common.py
| A	applications/ocr/data/ocr.svm.gz
| A	applications/ocr/data/ocr.svm.head
| A	applications/ocr/data/train_data_x.asc.gz
| A	applications/ocr/data/train_data_y.asc.gz
| A	applications/ocr/predict
| A	applications/ocr/train
| D	examples/undocumented/python_modular/ocr/Ai.py
| D	examples/undocumented/python_modular/ocr/FigureWidget.py
| D	examples/undocumented/python_modular/ocr/MatrixWidget.py
| D	examples/undocumented/python_modular/ocr/QuadrWidget.py
| D	examples/undocumented/python_modular/ocr/README
| D	examples/undocumented/python_modular/ocr/common.py
| D	examples/undocumented/python_modular/ocr/data/ocr.svm.gz
| D	examples/undocumented/python_modular/ocr/data/ocr.svm.head
| D	examples/undocumented/python_modular/ocr/data/train_data_x.asc.gz
| D	examples/undocumented/python_modular/ocr/data/train_data_y.asc.gz
| D	examples/undocumented/python_modular/ocr/predict
| D	examples/undocumented/python_modular/ocr/train
|  
* commit dad6223a9bfff45e65e8ff04ccba4d29b3bc85b7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Sep 4 07:57:18 2010 +0000
| 
|     symlink msplicer data
| 
| A	applications/msplicer/data
|  
* commit c3e02146bb52dda4c6961b820eea47de52334296
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Sep 4 07:56:46 2010 +0000
| 
|     symlink easysvm data
| 
| A	applications/easysvm/data
|  
* commit 558216a0507d078eee8bb9339fee63dabc1e4a0a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Sep 4 07:56:18 2010 +0000
| 
|     symlink asp data
| 
| A	applications/asp/data
|  
* commit 459413bdb9efe0455bedcd8c95a1e8e7423ffc4d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Sep 4 07:55:47 2010 +0000
| 
|     symlink arts data
| 
| M	applications/arts/arts
| A	applications/arts/data
|  
* commit 6e679ad89b7b7fda891a8e17a7fd0d0e501c6ac4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Sep 4 07:21:51 2010 +0000
| 
|     move toydata also to data/toy
| 
| D	data/DynProg_example.dat
| D	data/DynProg_example_py.dat.mat
| D	data/DynProg_example_py.pickle.gz
| D	data/fm_test_byte.dat
| D	data/fm_test_byte_transposed.dat
| D	data/fm_test_cube.dat
| D	data/fm_test_dna.dat
| D	data/fm_test_real.dat
| D	data/fm_test_real_transposed.dat
| D	data/fm_test_sparsereal.dat
| D	data/fm_test_word.dat
| D	data/fm_test_word_transposed.dat
| D	data/fm_train_byte.dat
| D	data/fm_train_byte_transposed.dat
| D	data/fm_train_cube.dat
| D	data/fm_train_dna.dat
| D	data/fm_train_real.dat
| D	data/fm_train_real_transposed.dat
| D	data/fm_train_sparsereal.dat
| D	data/fm_train_word.dat
| D	data/fm_train_word_transposed.dat
| D	data/label_train_dna.dat
| D	data/label_train_dna42.dat
| D	data/label_train_multiclass.dat
| D	data/label_train_twoclass.dat
| D	data/train_sparsereal.light
|  
* commit f0cd519d6a62f0db2214ce030819d32522dc48eb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 3 16:08:55 2010 +0000
| 
|     remove huge data files
| 
| D	applications/easysvm/data/README
|  
* commit f91ffd23f57a0f195103c8af5d22f5ff907f3de1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 3 14:59:10 2010 +0000
| 
|     move applications back to trunk
| 
| A	applications/arts/arts
| A	applications/arts/convert_artsmat.m
| A	applications/arts/genomic.py
| A	applications/arts/signal_sensor.py
| A	applications/arts/util.py
| A	applications/asp/LICENSE
| A	applications/asp/Makefile
| A	applications/asp/NEWS
| A	applications/asp/README
| A	applications/asp/asp
| A	applications/asp/convert_mat.m
| A	applications/asp/dna.fa
| A	applications/asp/genomic.py
| A	applications/asp/model.py
| A	applications/asp/seqdict.py
| A	applications/asp/signal_detectors.py
| A	applications/easysvm/AUTHORS
| A	applications/easysvm/LICENSE
| A	applications/easysvm/MANIFEST.in
| A	applications/easysvm/README
| A	applications/easysvm/data/README
| A	applications/easysvm/dependencies/antlr_python_runtime-3.0.1.tar.gz
| A	applications/easysvm/dependencies/arff-1.0c.tar.gz
| A	applications/easysvm/dist/easysvm-0.1.tar.gz
| A	applications/easysvm/dist/easysvm-0.2.tar.gz
| A	applications/easysvm/dist/easysvm-0.3.tar.gz
| A	applications/easysvm/distutils-help.txt
| A	applications/easysvm/esvm/__init__.py
| A	applications/easysvm/esvm/datafuncs.py
| A	applications/easysvm/esvm/experiment.py
| A	applications/easysvm/esvm/mldata.py
| A	applications/easysvm/esvm/mldata_arff.py
| A	applications/easysvm/esvm/parse.py
| A	applications/easysvm/esvm/plots.py
| A	applications/easysvm/esvm/poim.py
| A	applications/easysvm/esvm/utils.py
| A	applications/easysvm/galaxy/CloudGen.xml
| A	applications/easysvm/galaxy/FastaGen.xml
| A	applications/easysvm/galaxy/MotifGen.xml
| A	applications/easysvm/galaxy/README
| A	applications/easysvm/galaxy/easysvm.xml
| A	applications/easysvm/galaxy/eval.xml
| A	applications/easysvm/galaxy/modelsel.xml
| A	applications/easysvm/galaxy/poim.xml
| A	applications/easysvm/scripts/datagen.py
| A	applications/easysvm/scripts/easysvm.py
| A	applications/easysvm/setup.py
| A	applications/easysvm/splicesites/__init__.py
| A	applications/easysvm/splicesites/test_gc.py
| A	applications/easysvm/splicesites/tutorial_example.py
| A	applications/easysvm/splicesites/utils.py
| A	applications/msplicer/LICENSE
| A	applications/msplicer/Makefile
| A	applications/msplicer/NEWS
| A	applications/msplicer/README
| A	applications/msplicer/content_sensors.py
| A	applications/msplicer/convert_mat.m
| A	applications/msplicer/dna.fa
| A	applications/msplicer/genomic.py
| A	applications/msplicer/model.py
| A	applications/msplicer/msplicer
| A	applications/msplicer/plif.py
| A	applications/msplicer/seqdict.py
| A	applications/msplicer/signal_detectors.py
| A	applications/sailfish/Makefile
| A	applications/sailfish/sailfish.cpp
| A	applications/sailfish/scripts/generate_mask.py
| M	doc/Doxyfile
| M	doc/pages/ExamplesStaticOctave.mainpage
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	examples/undocumented/r/graphical/hmm.R
| M	examples/undocumented/r/graphical/svm_classification.R
| M	examples/undocumented/r/kernel_linear.R
|  
* commit 240610063c4c66e7b80870e84ba2ae3d7aaac6f8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 3 13:32:11 2010 +0000
| 
|     struct->class typo fix
| 
| M	src/libshogun/lib/File.h
|  
* commit 420d90416519c06f597a9ff4bb88c7befab3114d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 3 12:56:22 2010 +0000
| 
|     fix button shortcuts
| 
| M	examples/undocumented/python_modular/ocr/predict
|  
* commit 46e591adf6f38dbc7e5ea4f3758758ed8098f44a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 3 09:55:39 2010 +0000
| 
|     set C locale on startup in init_shogun to prevent incompatiblies with fprintf and floating point separators
| 
| M	src/libshogun/base/init.cpp
|  
* commit 971aad1a80077e8a97b3d1f442bc1f3284409e46
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 3 08:53:14 2010 +0000
| 
|     add some readme
| 
| A	examples/undocumented/python_modular/ocr/README
| M	examples/undocumented/python_modular/ocr/predict
|  
* commit 99cd9451ae75b46db40ffe25ff488d6f97fbee44
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 1 21:29:55 2010 +0000
| 
|     move data to data/ directory and rename main -> predict, main-train -> train
| 
| M	examples/undocumented/python_modular/ocr/common.py
| A	examples/undocumented/python_modular/ocr/data/ocr.svm.gz
| A	examples/undocumented/python_modular/ocr/data/ocr.svm.head
| A	examples/undocumented/python_modular/ocr/data/train_data_x.asc.gz
| A	examples/undocumented/python_modular/ocr/data/train_data_y.asc.gz
| D	examples/undocumented/python_modular/ocr/main-train.py
| D	examples/undocumented/python_modular/ocr/main.py
| D	examples/undocumented/python_modular/ocr/ocr.svm.gz
| D	examples/undocumented/python_modular/ocr/ocr.svm.head
| A	examples/undocumented/python_modular/ocr/predict
| A	examples/undocumented/python_modular/ocr/train
| D	examples/undocumented/python_modular/ocr/train_data_x.asc.gz
| D	examples/undocumented/python_modular/ocr/train_data_y.asc.gz
|  
* commit 95febf9c335cf3847587851f9998c1fec92af08d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 1 21:27:35 2010 +0000
| 
|     some minor modifications / beautifications
| 
| M	examples/undocumented/python_modular/ocr/Ai.py
| M	examples/undocumented/python_modular/ocr/main-train.py
| M	examples/undocumented/python_modular/ocr/main.py
| M	examples/undocumented/python_modular/ocr/ocr.svm.gz
| M	examples/undocumented/python_modular/ocr/ocr.svm.head
|  
* commit e9da9a8ab79278affec2ac40a4c8cef0834fb8ea
| Author: D. Lehmann <>
| Date:   Wed Sep 1 16:34:47 2010 +0000
| 
|     * examples/undocumented/python_modular/ocr/*:
|     
|       - Buttons removed: `load classifier', `train error', `test error'.
|     
|       - History has two rows
|     
|       - Buttons (`Go!', `clear') are smaller.
|     
|       - Do `Go!'-action on middle click at the FIGURE_WIDGET.
|     
|       - Trainings data (ocr.svm.*) changed.
| 
| M	examples/undocumented/python_modular/ocr/Ai.py
| M	examples/undocumented/python_modular/ocr/FigureWidget.py
| M	examples/undocumented/python_modular/ocr/common.py
| M	examples/undocumented/python_modular/ocr/main.py
| M	examples/undocumented/python_modular/ocr/ocr.svm.gz
| M	examples/undocumented/python_modular/ocr/ocr.svm.head
|  
* commit 128cbb07317194b7d67875d269a794cd37177f7b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Aug 30 05:30:43 2010 +0000
| 
|     warn that LDA/liblinear and other features may be missing when lapack is not available
| 
| M	src/configure
|  
* commit 77a3fb4941da52c40bad36bd71ef539ca911e945
| Author: D. Lehmann <>
| Date:   Thu Aug 19 15:29:41 2010 +0000
| 
|     * examples/undocumented/python_modular/ocr/*:
|     
|       - Lines are lines ...  Don't worry if you does not understand this
|         sentence ;P
|     
|       - The training is a command line program and is outsided from the
|         GUI tool.  It tests for the best validation error.
| 
| M	examples/undocumented/python_modular/ocr/Ai.py
| M	examples/undocumented/python_modular/ocr/FigureWidget.py
| M	examples/undocumented/python_modular/ocr/common.py
| A	examples/undocumented/python_modular/ocr/main-train.py
| M	examples/undocumented/python_modular/ocr/main.py
| M	examples/undocumented/python_modular/ocr/ocr.svm.gz
| A	examples/undocumented/python_modular/ocr/ocr.svm.head
|  
* commit db72681f99670dbe637c6f51ba82cbebd1844ee6
| Author: D. Lehmann <>
| Date:   Wed Aug 18 17:34:26 2010 +0000
| 
|     * src/libshogun/kernel/GaussianKernel.h:
|     
|       - public get_width() added.
| 
| M	src/libshogun/kernel/GaussianKernel.h
|  
* commit 425ed713df53de609e5ecbc57797b2970ff772be
| Author: Nico Goernitz <Nico.Goernitz@tu-berlin.de>
| Date:   Wed Aug 18 14:05:13 2010 +0000
| 
|     configure changed for matlab 2010a
| 
| M	src/configure
|  
* commit b5f035a4f9ddca26b07c2bc3aaa1e4741f82be1f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 18 12:19:13 2010 +0000
| 
|     wrap pr_loqo
| 
| A	examples/undocumented/matlab_and_octave/misc_pr_loqo.m
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit 69016ce021d77cb71cfe35915130222eb8066a8f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 17 20:09:45 2010 +0000
| 
|     - use SG_ABS_PROGRESS to do gmnp progress and different calculation routine
|     - some more parameter ideas for serialization/model selection
| 
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/gmnplib.cpp
| M	src/libshogun/classifier/svm/gmnplib.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
|  
* commit 04418ba4385dffc0024eef927b14794c18be6cea
| Author: D. Lehmann <>
| Date:   Tue Aug 17 12:44:24 2010 +0000
| 
|     * examples/undocumented/python_modular/ocr added:
|     
|       - OCR example ... Have fun =)
|     
|       - Make sure that LC_ALL="" before running.
|     
|     * examples/undocumented/python_modular/ocr/ocr.svm.gz:
|     
|       - Format for LC_ALL="C" (converted)
| 
| A	examples/undocumented/python_modular/ocr/Ai.py
| A	examples/undocumented/python_modular/ocr/FigureWidget.py
| A	examples/undocumented/python_modular/ocr/MatrixWidget.py
| A	examples/undocumented/python_modular/ocr/QuadrWidget.py
| A	examples/undocumented/python_modular/ocr/common.py
| A	examples/undocumented/python_modular/ocr/main.py
| A	examples/undocumented/python_modular/ocr/ocr.svm.gz
| A	examples/undocumented/python_modular/ocr/train_data_x.asc.gz
| A	examples/undocumented/python_modular/ocr/train_data_y.asc.gz
|  
* commit 03cf8a9c17e178de5a9444a772cf6cac2efc1dc9
| Author: D. Lehmann <>
| Date:   Tue Aug 17 12:07:41 2010 +0000
| 
|     * src/libshogun/classifier/svm/gmnp*
|     
|       - Progress output added.
| 
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
| M	src/libshogun/classifier/svm/gmnplib.cpp
| M	src/libshogun/classifier/svm/gmnplib.h
|  
* commit 19c84b9b069fb63702c28a38886aa9c8f83b02b6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 12 07:04:05 2010 +0000
| 
|     remove some debug msg occurring in static interfaces with poly kernel
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit 1e8fe89b519f37cf50e14f7a26b17ce2659ac1e3
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Aug 9 09:13:13 2010 +0000
| 
|     moved API changes to separate branch for now
| 
| M	src/modular/Classifier.i
| M	src/modular/Clustering.i
| M	src/modular/Distance.i
| M	src/modular/Distribution.i
| M	src/modular/Evaluation.i
| M	src/modular/Features.i
| M	src/modular/Kernel.i
| M	src/modular/Library.i
| M	src/modular/PreProc.i
| M	src/modular/Regression.i
| D	src/modular/Shogun.i
| M	src/modular/Structure.i
|  
* commit 71c694667db97f32840538e20ba20635ec3763a7
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Sun Aug 8 14:27:46 2010 +0000
| 
|     more work towards getting serialization working for WDK
| 
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/SimpleFeatures.cpp
| M	src/libshogun/features/StringFeatures.cpp
| M	src/libshogun/features/StringFeatures.h
| A	src/libshogun/kernel/FirstElementKernelNormalizer.cpp
| M	src/libshogun/kernel/FirstElementKernelNormalizer.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
|  
* commit a77b26b65fb4d9ee0a1438e343df6925c4a32d50
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Aug 6 21:21:37 2010 +0000
| 
|     packed everything into one large shared object (_Shogun.so) to get serialization to work from the modular interfaces.
| 
| M	src/modular/Classifier.i
| M	src/modular/Clustering.i
| M	src/modular/Distance.i
| M	src/modular/Distribution.i
| M	src/modular/Evaluation.i
| M	src/modular/Features.i
| M	src/modular/Kernel.i
| M	src/modular/Library.i
| M	src/modular/PreProc.i
| M	src/modular/Regression.i
| A	src/modular/Shogun.i
| M	src/modular/Structure.i
|  
* commit 4735872287edbd91118120ec73ce8d2793c08b8e
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Aug 6 18:55:31 2010 +0000
| 
|     added serialization support for a few kernel normalizers
| 
| A	src/libshogun/kernel/AvgDiagKernelNormalizer.cpp
| A	src/libshogun/kernel/IdentityKernelNormalizer.cpp
| M	src/libshogun/kernel/IdentityKernelNormalizer.h
| A	src/libshogun/kernel/KernelNormalizer.cpp
|  
* commit 6841cec0ec38b01423ef2696e7a2c4e516a70a84
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Aug 6 18:21:56 2010 +0000
| 
|     added serialization support for a few kernel normalizers
| 
| M	src/libshogun/kernel/AvgDiagKernelNormalizer.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelNormalizer.h
|  
* commit 1de92036738c1bf3fe94a76c6cdb7cdedde5bd23
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Aug 6 12:02:37 2010 +0000
| 
|     fixed compile warning
| 
| M	src/libshogun/features/StringFeatures.cpp
|  
* commit c4982f7fcce8dac500f30f413d1ea83a041665ed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 4 07:51:48 2010 +0000
| 
|     get --enable-static to work correctly again (requires libshogun/ui in in src dir) and statically links in libshogun/libshogunui
| 
| M	src/configure
| M	src/octave/OctaveInterface.cpp
|  
* commit 70ddf7013ecb24a808fc03e6483c37727e833424
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 3 08:22:37 2010 +0000
| 
|     check nu only for certain scatter types
| 
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
|  
* commit 14884dcddc8f521f47033d7273cf7bd36a0bc12c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Aug 2 07:02:05 2010 +0000
| 
|     -modular support for spectrummismatchrbfkernel - based on a patch from Rob Patro
| 
| M	src/libshogun/kernel/SpectrumMismatchRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumMismatchRBFKernel.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/GUIKernel.h
| M	src/modular/Kernel.i
|  
* commit 76dabcee917830557fa054eb49a9b093a2808e64
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Aug 2 06:43:15 2010 +0000
| 
|     wip commit on lbppyr features`
| 
| M	src/libshogun/features/LBPPyrDotFeatures.cpp
|  
* commit 07c3a30b85b72388b3d6f2b7503d5cc243cee7e5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 20 22:14:36 2010 +0000
| 
|     some examples to set position weights etc
| 
| M	examples/undocumented/python_modular/kernel_weighted_degree_position_string_modular.py
| M	examples/undocumented/python_modular/kernel_weighted_degree_string_modular.py
|  
* commit d19e23fb93e2d14ed04d3ca9c15c74a65db985e5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 19 08:07:28 2010 +0000
| 
|     update copyright
| 
| M	src/libshogun/kernel/ZeroMeanCenterKernelNormalizer.h
|  
* commit 9d9349a810c0b83f9d39bde506b407eac6d66e92
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 15 21:32:40 2010 +0000
| 
|     whitespace cleanups
| 
| M	src/libshogun/kernel/ZeroMeanCenterKernelNormalizer.h
|  
* commit 84b17ee37d8bd626bcfe309b259fbebf7218b4c7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 15 20:51:25 2010 +0000
| 
|     add support for SpectrumMismatchRBFKernel for modular interfaces
| 
| M	src/modular/Kernel.i
|  
* commit 4feb3c49dd45b2b46df3899f6565855cdde49508
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 15 20:46:07 2010 +0000
| 
|     integrate patch from Gorden Jemwa adding ZeroMeanCenterKernelNormalizer
| 
| M	src/libshogun/features/LBPPyrDotFeatures.cpp
| M	src/libshogun/kernel/Kernel.h
| A	src/libshogun/kernel/ZeroMeanCenterKernelNormalizer.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/Kernel.i
| M	src/modular/SGBase.i
|  
* commit 7e7656767e556eb0edd0c624e7743a0cee7d85b1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 15 20:43:34 2010 +0000
| 
|     compile fix when reference counting is disabled
| 
| M	src/libshogun/classifier/mkl/MKL.cpp
|  
* commit 5d0f03ab0d9f5223036022f098450beaf14d710b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 15 20:42:25 2010 +0000
| 
|     improve error msg
| 
| M	src/libshogun/classifier/svm/SVMOcas.cpp
|  
* commit 6eb6baec982f5656ab90edb84d9376c00e6aa9d2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 15 14:48:22 2010 +0000
| 
|     give a bit more useful error msg
| 
| M	src/libshogun/classifier/svm/LibSVMMultiClass.cpp
|  
* commit e9abfa4b5352c7ade90e5e02c617e8b56da2d72e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 13 20:46:37 2010 +0000
| 
|     fix remaining classifier r_modular examples
| 
| M	examples/undocumented/r_modular/classifier_gmnpsvm_modular.R
| M	examples/undocumented/r_modular/classifier_gpbtsvm_modular.R
| M	examples/undocumented/r_modular/classifier_knn_modular.R
| M	examples/undocumented/r_modular/classifier_liblinear_modular.R
| M	examples/undocumented/r_modular/classifier_libsvmmulticlass_modular.R
| M	examples/undocumented/r_modular/classifier_libsvmoneclass_modular.R
| M	examples/undocumented/r_modular/classifier_mpdsvm_modular.R
| M	examples/undocumented/r_modular/classifier_perceptron_modular.R
| M	examples/undocumented/r_modular/classifier_subgradientsvm_modular.R
| M	examples/undocumented/r_modular/classifier_svmlight_modular.R
| M	examples/undocumented/r_modular/classifier_svmlin_modular.R
| M	examples/undocumented/r_modular/classifier_svmocas_modular.R
| M	examples/undocumented/r_modular/classifier_svmsgd_modular.R
|  
* commit 45a7ce5903cc88564e12a6373c3b5d7f4c8e2f93
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 13 20:24:09 2010 +0000
| 
|     get a number of the modular examples back to work with the transposed ascii files
|     
|     the r_modular interface will only work when configured with
|     
|     ./configure --disable-reference-counting --prefix=/usr/local/stow/shogun-0.9.4 --interfaces=libshogun,r_modular
|     
|     (leaking memory) for now.
| 
| M	examples/undocumented/r_modular/classifier_gmnpsvm_modular.R
| M	examples/undocumented/r_modular/classifier_svmocas_modular.R
| M	examples/undocumented/r_modular/distribution_histogram_modular.R
| M	examples/undocumented/r_modular/distribution_hmm_modular.R
| M	examples/undocumented/r_modular/distribution_linearhmm_modular.R
| M	examples/undocumented/r_modular/kernel_chi2_modular.R
| M	examples/undocumented/r_modular/kernel_combined_modular.R
| M	examples/undocumented/r_modular/kernel_comm_word_string_modular.R
| M	examples/undocumented/r_modular/kernel_distance_modular.R
| M	examples/undocumented/r_modular/kernel_gaussian_modular.R
| M	examples/undocumented/r_modular/kernel_gaussian_shift_modular.R
| M	examples/undocumented/r_modular/kernel_linear_modular.R
| M	examples/undocumented/r_modular/kernel_poly_modular.R
| M	examples/undocumented/r_modular/kernel_sigmoid_modular.R
| M	examples/undocumented/r_modular/kernel_sparsegaussian_modular.R
| M	examples/undocumented/r_modular/kernel_sparselinear_modular.R
| M	examples/undocumented/r_modular/kernel_sparsepoly_modular.R
| M	examples/undocumented/r_modular/kernel_weighted_comm_word_string_modular.R
| M	examples/undocumented/r_modular/mkl_multiclass_modular.R
| M	examples/undocumented/r_modular/preproc_logplusone_modular.R
| M	examples/undocumented/r_modular/preproc_normone_modular.R
|  
* commit 803b3474b45736e8b00195cab3e436abddfdce07
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 13 12:24:19 2010 +0000
| 
|     potentially fix a corner case when the cutting plane is the null vector
| 
| M	src/libshogun/classifier/svm/SVMOcas.cpp
|  
* commit ddfb5d255ffedc268f7ffa30271e8ea5fd0a6625
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 13 08:35:33 2010 +0000
| 
|     add a check to linear kernel to print an error when more than 5 parameters are passed
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit 4b78753f96700c94fa201f52bb600f0830344588
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jul 7 07:52:54 2010 +0000
| 
|     be more tolerant when data is 'transposed', i.e. accept column and row vectors as vectors
| 
| M	src/libshogun/lib/HDF5File.cpp
|  
* commit 12bd670736999f947ab0f2aa55bf208f3ce0864c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jul 7 07:52:10 2010 +0000
| 
|     improve error message
| 
| M	src/libshogun/regression/KRR.cpp
|  
* commit 4fc74a3eb78703856225d98024833fd2514016e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jul 7 07:51:35 2010 +0000
| 
|     include swig_typemaps before including io to get FILE* wrapped (fro python file's)
| 
| M	src/modular/SGBase.i
| M	src/python_modular/swig_typemaps.i
|  
* commit 7f1fd5c682bba1eab5d7a702c63febf20b00ec33
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jul 7 07:50:56 2010 +0000
| 
|     fix linecount target
| 
| M	src/Makefile
|  
* commit 7cdd6d24f7cb9ee82c0a5358780fddde5611a840
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 22 09:20:42 2010 +0000
| 
|     fix a number of signed / unsigned mismatches and start to integrate lbp pyr features
| 
| M	src/libshogun/classifier/svm/libqp_splx.cpp
| A	src/libshogun/features/LBPPyrDotFeatures.cpp
| A	src/libshogun/features/LBPPyrDotFeatures.h
| M	src/modular/Features.i
|  
* commit 8f8588724ed00bb637cdc863befb81b51b1cbec2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 20 22:49:58 2010 +0000
| 
|     merge in libocas version 0.93
| 
| M	src/libshogun/classifier/svm/SVMOcas.cpp
| M	src/libshogun/classifier/svm/SVMOcas.h
| M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| M	src/libshogun/classifier/svm/WDSVMOcas.h
| M	src/libshogun/classifier/svm/libocas.cpp
| M	src/libshogun/classifier/svm/libocas.h
| A	src/libshogun/classifier/svm/libqp.h
| A	src/libshogun/classifier/svm/libqp_splx.cpp
| D	src/libshogun/classifier/svm/qpssvmlib.cpp
| D	src/libshogun/classifier/svm/qpssvmlib.h
| M	src/libshogun/lib/Mathematics.h
|  
* commit d2b3f72f5f2ad9e0cca78923d850a1366a53683a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 20 19:58:31 2010 +0000
| 
|     copy custom distance from custom kernel
| 
| A	src/libshogun/distance/CustomDistance.cpp
| A	src/libshogun/distance/CustomDistance.h
| M	src/libshogun/distance/Distance.h
| M	src/modular/Distance.i
|  
* commit 43f290d778e1a257489f0c3425cf13f66844848a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jun 19 22:04:14 2010 +0000
| 
|     hopefully fix testing in scatter svm
| 
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.h
|  
* commit 4cc887652327215a37c322177e20178cae792177
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 18 20:58:53 2010 +0000
| 
|     potentially fix crasher in svmocas (reported by yaroslav)
| 
| M	src/libshogun/classifier/svm/SVMOcas.cpp
|  
* commit 06e8f796c6d2031f7a2df5c33ea5927c5795d0c4
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Jun 18 12:58:28 2010 +0000
| 
|     added method to get kernel col/row
| 
| M	src/libshogun/kernel/Kernel.h
|  
* commit a9ea5111b7c4b5a6fc3cbc55e1dffaed6cf9dbfb
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Jun 18 11:05:47 2010 +0000
| 
|     added kernel-based distance
| 
| A	src/libshogun/distance/KernelDistance.cpp
| A	src/libshogun/distance/KernelDistance.h
| M	src/modular/Distance.i
|  
* commit 3bb85abc56ca80d46016eb4410cd0e6708d3e6b4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 18 10:04:18 2010 +0000
| 
|     integrate variance kernel normalizer into swig
| 
| M	src/modular/Kernel.i
|  
* commit 18318bb23c700846ae96f1ca1f38961a100e53e3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 17 14:47:05 2010 +0000
| 
|     a couple of fixes related to testing
| 
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.h
| M	src/libshogun/kernel/ScatterKernelNormalizer.h
|  
* commit 088b90884f39f8ee26a615878f69c56f46b8bb19
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 17 10:26:48 2010 +0000
| 
|     several SVMlight related compile fixes
| 
| M	src/configure
| M	src/libshogun/classifier/mkl/MKLClassification.cpp
| M	src/libshogun/classifier/svm/SVMLightOneClass.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
| M	src/libshogun/regression/svr/MKLRegression.cpp
|  
* commit 383f7f26cd39baf150377a34a7d57ee722ee0d33
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 17 09:42:00 2010 +0000
| 
|     include config to get USE_LIGHT macro
| 
| M	src/libshogun/classifier/svm/ScatterSVM.h
|  
* commit 54d78d7624614676b4c43b81b0b2d857974ab21a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 17 09:30:10 2010 +0000
| 
|     rename SVM_light to SVMLight for consistency and introduce SVMLightOneClass (C optimization only) and let scatter svm use it
| 
| M	src/NEWS
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.h
| A	src/libshogun/classifier/svm/SVMLight.cpp
| A	src/libshogun/classifier/svm/SVMLight.h
| A	src/libshogun/classifier/svm/SVMLightOneClass.cpp
| A	src/libshogun/classifier/svm/SVMLightOneClass.h
| D	src/libshogun/classifier/svm/SVM_light.cpp
| D	src/libshogun/classifier/svm/SVM_light.h
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.h
| M	src/libshogun/kernel/ScatterKernelNormalizer.h
| A	src/libshogun/regression/svr/SVRLight.cpp
| A	src/libshogun/regression/svr/SVRLight.h
| D	src/libshogun/regression/svr/SVR_light.cpp
| D	src/libshogun/regression/svr/SVR_light.h
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/Classifier.i
| M	src/modular/Regression.i
|  
* commit d536f15491214b1f4b363e9cd0c84acce44bfb44
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 16 09:06:11 2010 +0000
| 
|     temporarily disable two-class labeling
| 
| M	src/libshogun/classifier/svm/SVM_light.cpp
|  
* commit 5fd9f4d27fae668759cdbc3cbdbc136fd27427c1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 15 17:11:56 2010 +0000
| 
|     testrule1/2 should work now
| 
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
|  
* commit 2189080bcc32154dd179d4a4b2363cc328460c26
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 15 14:26:33 2010 +0000
| 
|     fix a few crashers but still crashing...
| 
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
|  
* commit 56472e6da88f2e94f4d378c0d1c203115e209caa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 14 20:29:12 2010 +0000
| 
|     untested (but compiling) code for all the new different scatter svm type
| 
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/SVM_light.h
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.h
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 42caa4698ef52e73e58f45cc3ac581355b2da000
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 9 10:57:21 2010 +0000
| 
|     fix set_position_weights for wd kernel (as reported by Dave duVerle)
| 
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
|  
* commit 2432d7aad423657228c3b283d54090fd1394c26b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 4 14:20:09 2010 +0000
| 
|     add some minor documentation to liblinear and introduce 3 types to scatter svm
| 
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.h
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 44be25a65e106a54e4427a2474bb5311e48b567e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 2 18:24:31 2010 +0000
| 
|     swig 2.0beta support
| 
| M	src/NEWS
| M	src/configure
|  
* commit c87ce88fa332eb5f60ac316b3bd2a3e8d1cd7ba7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 31 14:24:16 2010 +0000
| 
|     Preparing for new Release shogun_0.9.3
| 
| M	doc/Doxyfile
|  
* commit 3f11766db0ede3ecc53b3073957e765b51b0267e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 31 14:24:02 2010 +0000
| 
|     updated reference documentation
| 
| M	doc/Doxyfile
|  
* commit d02b1e589b615cae2e48f4ce8eb50e85df4db04b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 31 14:15:26 2010 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 7b83f5eb556739e96086b99fcbbc098d21e65d83
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 31 12:37:32 2010 +0000
| 
|     Preparing for new Release shogun_0.9.3
| 
| M	doc/Doxyfile
|  
* commit 98b919f00433110175d9f7c090135912db52520c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 31 12:36:42 2010 +0000
| 
|     updated reference documentation
| 
| M	doc/Doxyfile
|  
* commit b3f12cd00e095741d41d54cb38bbc64c1a64961b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 31 12:28:29 2010 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 571e3f35c6549136de24f0d30d8ea398be4f3b46
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 31 12:28:00 2010 +0000
| 
|     update NEWS
| 
| M	src/NEWS
|  
* commit bca711a2b82caeb600c61ebd2647d2766d37535c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 31 12:26:55 2010 +0000
| 
|     Preparing for new Release shogun_0.9.3
| 
| M	doc/Doxyfile
|  
* commit 9351e5fc727c380cdb1d77faee191ea786080244
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 31 12:09:58 2010 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit c66d31c64e33d378858dbb4a99ebdde250012159
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 31 12:08:56 2010 +0000
| 
|     update faq about windows
| 
| M	doc/pages/FAQ.mainpage
|  
* commit 231fa7b7439f9a54ee03a51af99f665adbeed2e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 31 11:57:09 2010 +0000
| 
|     compile fixes for osx
| 
| M	src/Makefile.template
| M	src/configure
|  
* commit 0fb87f0b1b444e483111b4c00bae2ea18d6f74e2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 30 21:37:53 2010 +0000
| 
|     updated reference documentation
| 
| M	doc/Doxyfile
|  
* commit 0bdd7e50e215331c90a6e7599b2ed68536d955f7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 30 21:05:52 2010 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 40eab908e980d99178e1849c4144f2b56dcee511
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 28 08:47:58 2010 +0000
| 
|     update news
| 
| M	src/NEWS
|  
* commit 080063d0ac4edb6cd02410c22d67408a3584ef1b
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Thu May 27 18:52:51 2010 +0000
| 
|      MKL Multiclass: added debug output, for L1 norm check of duality gap now performed instead of weight
| 
| M	examples/undocumented/cmdline/mkl_multiclass.sg
| M	examples/undocumented/matlab_and_octave/mkl_multiclass.m
| M	examples/undocumented/python/mkl_multiclass.py
| M	examples/undocumented/r/mkl_multiclass.R
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
| M	src/libshogun/classifier/mkl/MKLMultiClassGradient.cpp
|  
* commit 2681ed3750465a70437bd9dddbfa05dd30aecdac
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu May 27 12:54:06 2010 +0000
| 
|     minor fix
| 
| M	src/libshogun/kernel/SpectrumRBFKernel.cpp
|  
* commit feefe60b8687d3260225422b2767fe51bb1404dc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 26 21:10:50 2010 +0000
| 
|     upon vanilla make create documented/foo examples subdirectories
| 
| M	doc/Makefile
| M	doc/pages/ExamplesModularOctave.mainpage
| M	doc/pages/ExamplesModularPython.mainpage
| M	doc/pages/ExamplesModularR.mainpage
| M	doc/pages/ExamplesStaticCmdline.mainpage
| M	doc/pages/ExamplesStaticPython.mainpage
| M	doc/pages/ExamplesStaticR.mainpage
|  
* commit dd2ef7202bc383500ded0e686e27a0f5e98520c4
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon May 24 08:22:11 2010 +0000
| 
|     Fusion of RBF and Spectrum kernel
| 
| A	src/libshogun/kernel/SpectrumRBFKernel.cpp
| A	src/libshogun/kernel/SpectrumRBFKernel.h
|  
* commit a5be232262270cf753346e1d35628abc0e965ffd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 14 20:53:02 2010 +0000
| 
|     fix minor memory leak and bug in append features
| 
| M	src/libshogun/features/StringFeatures.h
|  
* commit 8d31d52f92bed5be455397ae7e147a6e258d7cc1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 14 19:30:30 2010 +0000
| 
|     fix uninited memory read in histogram normalization
| 
| M	src/libshogun/features/StringFeatures.h
|  
* commit 987b5c3ed690f36b5a4a3931dba6ed7fdbf772d2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 14 17:38:12 2010 +0000
| 
|     add close() to file to force close before destruction
| 
| M	src/libshogun/lib/File.cpp
| M	src/libshogun/lib/File.h
|  
* commit 23fd5eca65e9e998a51d5b7e99c422c7463f3182
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 12 06:12:12 2010 +0000
| 
|     enable scatter kernel from matlab interface
| 
| M	src/libshogun/classifier/mkl/MKLMultiClassGradient.cpp
| M	src/libshogunui/GUIKernel.cpp
|  
* commit 72389348dba7c13f7262125bce7e61edcade4649
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 10 09:17:34 2010 +0000
| 
|     add append_features function for CStringFeatures as inputs and impl. load/save for bytes
| 
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/AsciiFile.cpp
|  
* commit b5a3ed56e997af2a42f2b245e941364bf677c849
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun May 9 19:15:36 2010 +0000
| 
|     A    src/libshogun/kernel/SpectrumMismatchRBFKernel.cpp
| 
| A	src/libshogun/kernel/SpectrumMismatchRBFKernel.cpp
|  
* commit d3c68455ea195edc391213d02658da8c1042efc0
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun May 9 19:13:18 2010 +0000
| 
|     missing file
| 
| M	src/configure
| A	src/libshogun/kernel/SpectrumMismatchRBFKernel.h
|  
* commit f0f15898241879f783d917f7d9597f53e2bfa139
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun May 9 17:58:49 2010 +0000
| 
|     matlab gui for WEIGHTEDDEGREERBF and SPECTRUMMISMATCHRBF
| 
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/GUIKernel.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit 2d552e7128e272bfcc0ae86aef2700fd478eb20d
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun May 9 17:57:48 2010 +0000
| 
|     minor changes to CWeightedDegreeRBFKernel and CKernel for WeightedDegreeRBFKernel
| 
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/WeightedDegreeRBFKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeRBFKernel.h
|  
* commit bd291b5f3485ff5c05e3df809788e67b292b69cc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 7 22:28:36 2010 +0000
| 
|     add function to concatenate features
| 
| M	src/libshogun/features/StringFeatures.h
|  
* commit 1e901943f52df856b7ff5b6c61cccd452193efc9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 7 14:23:30 2010 +0000
| 
|     add functions to compute histogram/random features for it
| 
| M	src/libshogun/features/StringFeatures.h
| M	src/modular/Features.i
|  
* commit 13fbdb9a26d3da178208c724cce7cc2f9ac50077
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Tue May 4 16:26:15 2010 +0000
| 
|     GUIclassifier.cpp: mklnorm parameter now affects CMKLMultiClass
|     updated examples for MKL Multiclass
|     worked on PYChi2kernel
| 
| M	examples/undocumented/matlab_and_octave/mkl_multiclass.m
| M	examples/undocumented/octave_modular/mkl_multiclass_modular.m
| M	examples/undocumented/python_modular/mkl_multiclass_modular.py
| M	examples/undocumented/r_modular/mkl_multiclass_modular.R
| M	src/libshogun/kernel/PyramidChi2.cpp
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 3577018b353f6783939e8c573b304ad5bee0ff8d
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Tue May 4 16:01:43 2010 +0000
| 
|     added one kernel more and mkl norm
| 
| M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
|  
* commit dd99fff1c3d60337c9cb95ae3743a02eb6a3cd9a
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Tue May 4 16:00:06 2010 +0000
| 
|     iadded Lp norm MKL for MKL multiclass
| 
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
| M	src/libshogun/classifier/mkl/MKLMultiClassGLPK.h
| A	src/libshogun/classifier/mkl/MKLMultiClassGradient.cpp
| A	src/libshogun/classifier/mkl/MKLMultiClassGradient.h
| A	src/libshogun/classifier/mkl/MKLMultiClassOptimizationBase.cpp
| A	src/libshogun/classifier/mkl/MKLMultiClassOptimizationBase.h
|  
* commit c567c4fd597edcb9c521e71f9a40870ee15811e0
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Mon May 3 16:04:05 2010 +0000
| 
|     updated documentation
| 
| M	src/libshogun/kernel/PyramidChi2.h
|  
* commit 125720b1a12655a4a5645a6a3a524ca8dfe11ad2
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon May 3 10:16:47 2010 +0000
| 
|     added WDK that considers additional properties of amino acids (swig)
| 
| M	src/modular/Kernel.i
|  
* commit a0b81f5d543fbea4c2a6375c59e066d224b056d5
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon May 3 10:06:55 2010 +0000
| 
|     added WDK that considers additional properties of amino acids
| 
| A	src/libshogun/kernel/WeightedDegreeRBFKernel.cpp
| A	src/libshogun/kernel/WeightedDegreeRBFKernel.h
|  
* commit 57b46c3817f40c28953d833ad4e1b4bae64e5581
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 3 09:41:27 2010 +0000
| 
|     fix sparse linear kernel's add_to_normal *sigh*
| 
| M	src/libshogun/kernel/LinearKernel.cpp
| M	src/libshogun/kernel/SparseLinearKernel.cpp
|  
* commit e356ff5e537ddfc74c587a6eaae02b5b463efaff
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 2 08:26:05 2010 +0000
| 
|     update example to show float32 support
| 
| M	examples/undocumented/python_modular/kernel_custom_modular.py
|  
* commit 5c138bf5e983a9a2b17710a9080928f3a0e37e9c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 2 08:24:20 2010 +0000
| 
|     allow also floats etc as input for custom kernel
| 
| M	src/libshogun/kernel/CustomKernel.cpp
| M	src/libshogun/kernel/CustomKernel.h
| A	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/modular/Kernel.i
| M	src/python_modular/swig_typemaps.i
|  
* commit d810cb69afd8d0e608fd1994ff8ac09bce556c92
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 16 11:33:44 2010 +0000
| 
|     move datatype enum into a separate file and introduce parameters with SVM C as example
| 
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVM.h
| A	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/File.h
| A	src/libshogun/lib/Parameter.h
|  
* commit f1c6f6d073ea486eaa2dff2d684439ad3c892c0f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 15 15:54:12 2010 +0000
| 
|     get some r examples back to work
| 
| M	examples/undocumented/r_modular/classifier_lda_modular.R
| M	examples/undocumented/r_modular/classifier_libsvm_modular.R
|  
* commit 5dc24baf7fdbfeaa65956cf57ac3380811fda519
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 15 15:26:16 2010 +0000
| 
|     update link dependency generator script to work with .so as suffix and get octave/r modular interfaces back to work
| 
| M	src/.generate_link_dependencies.py
| M	src/modular/SGBase.i
| M	src/octave_modular/sg_print_functions.cpp
| M	src/r_modular/sg_print_functions.cpp
|  
* commit 8212f4e76241ffeff2330c3afbc1539649abcc61
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 15 13:53:05 2010 +0000
| 
|     try to get python-dbg to work...
| 
| M	src/Makefile.template
| M	src/configure
|  
* commit 54ef7434a4d643d4dc086fa0c97c076acc8d0fb8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 14 20:04:16 2010 +0000
| 
|     adjust .so suffix for python and apply yaroslavs patch to use distutils to figure out libs & co
| 
| M	src/NEWS
| M	src/configure
|  
* commit d3e706f192a34a37b42d222a217c5288eb75bf07
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 14 16:50:22 2010 +0000
| 
|     -- even more descriptions
| 
| A	examples/descriptions/modular/kernel_histogram_word_string.txt
| A	examples/descriptions/modular/kernel_io.txt
| A	examples/descriptions/modular/kernel_matchwordstring.txt
| A	examples/descriptions/modular/kernel_wordmatch.txt
|  
* commit f5bdebd8aac8bc3153ee42020cd436f24134087a
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 14 16:50:19 2010 +0000
| 
|     -- new descriptions
| 
| A	examples/descriptions/modular/kernel_fisher.txt
| A	examples/descriptions/modular/kernel_salzberg_word_string.txt
| A	examples/descriptions/static/kernel_salzbergstring.txt
|  
* commit d48b96e158ea31640919467befc001e0f09933c8
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 14 16:50:16 2010 +0000
| 
|     -- more renameing and more descriptions
| 
| A	examples/descriptions/modular/kernel_local_alignment_string.txt
| D	examples/descriptions/modular/kernel_localalignmentstring.txt
| A	examples/descriptions/modular/kernel_oligo_string.txt
| D	examples/descriptions/modular/kernel_oligostring.txt
| A	examples/descriptions/modular/kernel_top.txt
| A	examples/descriptions/static/kernel_top.txt
| A	examples/undocumented/octave_modular/kernel_local_alignment_string_modular.m
| D	examples/undocumented/octave_modular/kernel_localalignmentstring_modular.m
| A	examples/undocumented/octave_modular/kernel_oligo_string_modular.m
| D	examples/undocumented/octave_modular/kernel_oligostring_modular.m
| A	examples/undocumented/r_modular/kernel_local_alignment_string_modular.R
| D	examples/undocumented/r_modular/kernel_localalignmentstring_modular.R
| A	examples/undocumented/r_modular/kernel_oligo_string_modular.R
| D	examples/undocumented/r_modular/kernel_oligostring_modular.R
| A	examples/undocumented/r_modular/kernel_top_modular.R
| D	examples/undocumented/r_modular/kernel_topfisher_modular.R
|  
* commit bec06900ca973e7560c64053de7a25c209bf8b82
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 14 16:50:12 2010 +0000
| 
|     -- more
| 
| A	examples/descriptions/modular/kernel_simple_locality_improved_string.txt
| D	examples/descriptions/modular/kernel_simplelocalityimprovedstring.txt
| A	examples/descriptions/modular/kernel_weighted_comm_word_string.txt
| D	examples/descriptions/modular/kernel_weightedcommwordstring.txt
| A	examples/undocumented/octave_modular/kernel_simple_locality_improved_string_modular.m
| D	examples/undocumented/octave_modular/kernel_simplelocalityimprovedstring_modular.m
| A	examples/undocumented/octave_modular/kernel_weighted_comm_word_string_modular.m
| D	examples/undocumented/octave_modular/kernel_weightedcommwordstring_modular.m
| A	examples/undocumented/r_modular/kernel_simple_locality_improved_string_modular.R
| D	examples/undocumented/r_modular/kernel_simplelocalityimprovedstring_modular.R
| A	examples/undocumented/r_modular/kernel_weighted_comm_word_string_modular.R
| D	examples/undocumented/r_modular/kernel_weightedcommwordstring_modular.R
|  
* commit eb401f4456e3966732174e988b4589ff7a5cc9a7
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 14 16:50:08 2010 +0000
| 
|     -- even more
| 
| A	examples/descriptions/modular/kernel_linear_byte.txt
| A	examples/descriptions/modular/kernel_linear_word.txt
| D	examples/descriptions/modular/kernel_linearbyte.txt
| D	examples/descriptions/modular/kernel_linearword.txt
| A	examples/descriptions/modular/kernel_poly_match_word_string.txt
| A	examples/descriptions/modular/kernel_weighted_degree_position_string.txt
| D	examples/descriptions/modular/kernel_weighteddegreepositionstring.txt
| A	examples/undocumented/octave_modular/kernel_linear_word_modular.m
| D	examples/undocumented/octave_modular/kernel_linearword_modular.m
| A	examples/undocumented/octave_modular/kernel_poly_match_word_string.m
| D	examples/undocumented/octave_modular/kernel_polymatchwordstring_modular.m
| A	examples/undocumented/octave_modular/kernel_weighted_degree_position_string_modular.m
| D	examples/undocumented/octave_modular/kernel_weighteddegreepositionstring_modular.m
| A	examples/undocumented/r_modular/kernel_comm_ulong_string_modular.R
| A	examples/undocumented/r_modular/kernel_comm_word_string_modular.R
| D	examples/undocumented/r_modular/kernel_commulongstring_modular.R
| D	examples/undocumented/r_modular/kernel_commwordstring_modular.R
| A	examples/undocumented/r_modular/kernel_fixed_degree_string_modular.R
| D	examples/undocumented/r_modular/kernel_fixeddegreestring_modular.R
| A	examples/undocumented/r_modular/kernel_gaussian_shift_modular.R
| D	examples/undocumented/r_modular/kernel_gaussianshift_modular.R
| A	examples/undocumented/r_modular/kernel_linear_byte_modular.R
| A	examples/undocumented/r_modular/kernel_linear_string_modular.R
| A	examples/undocumented/r_modular/kernel_linear_word_modular.R
| D	examples/undocumented/r_modular/kernel_linearbyte_modular.R
| D	examples/undocumented/r_modular/kernel_linearstring_modular.R
| D	examples/undocumented/r_modular/kernel_linearword_modular.R
| A	examples/undocumented/r_modular/kernel_weighted_degree_position_string_modular.R
| D	examples/undocumented/r_modular/kernel_weighteddegreepositionstring_modular.R
|  
* commit 649198995837cddb16e0cde0644bc314b641f9da
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 14 16:50:04 2010 +0000
| 
|     -- rename descriptions and some examples to make all example names
|     	within static and all within modular consistent
| 
| A	examples/descriptions/modular/kernel_comm_ulong_string.txt
| A	examples/descriptions/modular/kernel_comm_word_string.txt
| D	examples/descriptions/modular/kernel_commulongstring.txt
| D	examples/descriptions/modular/kernel_commwordstring.txt
| A	examples/descriptions/modular/kernel_fixed_degree_string.txt
| D	examples/descriptions/modular/kernel_fixeddegreestring.txt
| A	examples/descriptions/modular/kernel_gaussian_shift.txt
| D	examples/descriptions/modular/kernel_gaussianshift.txt
| D	examples/descriptions/modular/kernel_lik.txt
| A	examples/descriptions/modular/kernel_linear_string.txt
| D	examples/descriptions/modular/kernel_linearstring.txt
| A	examples/descriptions/modular/kernel_locality_improved_string.txt
| D	examples/undocumented/cmdline/kernel_sparse_linear.sg
| A	examples/undocumented/cmdline/kernel_sparselinear.sg
| A	examples/undocumented/octave_modular/kernel_comm_ulong_string_modular.m
| A	examples/undocumented/octave_modular/kernel_comm_word_string_modular.m
| D	examples/undocumented/octave_modular/kernel_commulongstring_modular.m
| D	examples/undocumented/octave_modular/kernel_commwordstring_modular.m
| A	examples/undocumented/octave_modular/kernel_fixed_degree_string_modular.m
| D	examples/undocumented/octave_modular/kernel_fixeddegreestring_modular.m
| A	examples/undocumented/octave_modular/kernel_gaussian_shift_modular.m
| D	examples/undocumented/octave_modular/kernel_gaussianshift_modular.m
| D	examples/undocumented/octave_modular/kernel_histogram_modular.m
| A	examples/undocumented/octave_modular/kernel_histogramword_modular.m
| A	examples/undocumented/octave_modular/kernel_linear_byte_modular.m
| A	examples/undocumented/octave_modular/kernel_linear_string_modular.m
| D	examples/undocumented/octave_modular/kernel_linearbyte_modular.m
| D	examples/undocumented/octave_modular/kernel_linearstring_modular.m
| D	examples/undocumented/python/kernel_linear_string.py
| A	examples/undocumented/python/kernel_linearstring.py
| D	examples/undocumented/r/kernel_histogram.R
| A	examples/undocumented/r/kernel_histogramword.R
| A	examples/undocumented/r/kernel_spectrum.R
| D	examples/undocumented/r/kernel_string.R
| A	examples/undocumented/r_modular/kernel_distance_modular.R
| D	examples/undocumented/r_modular/kernel_distancetokernel_modular.R
|  
* commit 0407e4cd7fe8648eafadcb89edacb70979892c6b
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 14 16:49:56 2010 +0000
| 
|     -- renamed examples to have consistent names within static interfaces
| 
| A	examples/kernel_distance.py
| A	examples/undocumented/cmdline/kernel_distance.sg
| D	examples/undocumented/cmdline/kernel_distancetokernel.sg
| D	examples/undocumented/python/kernel_distancetokernel.py
| A	examples/undocumented/r/kernel_distance.R
| D	examples/undocumented/r/kernel_distancetokernel.R
|  
* commit 71c2923bef91e4aeb5c79c29001a2e4eb538b64c
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 14 16:49:51 2010 +0000
| 
|     -- example descriptions for structure/DynProg
| 
| A	examples/descriptions/modular/structure_dynprog.txt
| A	examples/descriptions/static/structure_dynprog.txt
|  
* commit 01f2b402f3b0b619f55451c13fdb999b570824da
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 14 14:47:13 2010 +0000
| 
|     document remaining missing examples for dot features
| 
| A	examples/descriptions/static/features_dot_polynomial.txt
| A	examples/descriptions/static/features_dot_wdfeatures.txt
| A	examples/descriptions/static/features_dot_weightedspec.txt
|  
* commit d36cd3487092a163a1165fed0bffafdee2110fa8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 14 14:40:33 2010 +0000
| 
|     some more documentation for strings
| 
| A	examples/descriptions/modular/features_io.txt
| A	examples/descriptions/modular/features_snp.txt
| A	examples/descriptions/modular/features_string_hashed_wd.txt
| A	examples/descriptions/static/features_string.txt
| M	examples/undocumented/matlab_and_octave/features_string.m
| A	examples/undocumented/python_modular/features_string_hashed_wd_modular.py
| D	examples/undocumented/python_modular/hashed_wd_features_modular.py
|  
* commit caf808e5ef98d2ba52288c00fa535da208ccfbec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 14 13:42:52 2010 +0000
| 
|     slightly improve documentation remove duplicate examples (they are already in kernel_comm*)
| 
| M	examples/descriptions/modular/kernel_commwordstring.txt
| M	examples/descriptions/static/kernel_commwordstring.txt
| D	examples/undocumented/octave_modular/preproc_commulongstring_modular.m
| D	examples/undocumented/octave_modular/preproc_commwordstring_modular.m
| D	examples/undocumented/r_modular/preproc_commulongstring_modular.R
| D	examples/undocumented/r_modular/preproc_commwordstring_modular.R
|  
* commit e177d88560e874106ea15e60c3f6620403b70fa2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 14 13:29:47 2010 +0000
| 
|     add some missing example documentation
| 
| D	examples/descriptions/modular/distribution_linear_hmm.txt
| A	examples/descriptions/modular/distribution_linearhmm.txt
| A	examples/descriptions/static/distribution_linearhmm.txt
| A	examples/descriptions/static/distribution_markovchain.txt
| D	examples/undocumented/python_modular/distribution_linear_hmm_modular.py
| A	examples/undocumented/python_modular/distribution_linearhmm_modular.py
|  
* commit 0a8aa48c6b2cd6738026d35e36b6300be3b91ad5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 14 07:11:45 2010 +0000
| 
|     apply patch from Amir Saffari to add label confidences
| 
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/modular/Features.i
|  
* commit 9dec8a430e76d0ee6e825142483254078426ce49
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 12 16:00:38 2010 +0000
| 
|     fix race condition in perf measures
| 
| M	src/NEWS
| M	src/libshogun/evaluation/PerformanceMeasures.cpp
| M	src/libshogun/evaluation/PerformanceMeasures.h
|  
* commit 9193329686db78f84d719d044d4c12e4a9340db8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 12 13:46:23 2010 +0000
| 
|     update for 0.9.3
| 
| M	src/NEWS
|  
* commit 2551f5a6e280db5cabd0ac14a23600b00ea6559a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 5 13:18:25 2010 +0000
| 
|     really fix static libshogunui linking problem
| 
| M	src/configure
|  
* commit aa423be1467de0a4269c95a280354827a9db257a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 5 13:13:03 2010 +0000
| 
|     fix static linking of libshogunui
| 
| M	src/configure
|  
* commit 98e980181613f5343f798804f09d3b8a45712021
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 31 19:54:20 2010 +0000
| 
|     make -> $(MAKE)
| 
| M	Makefile
|  
* commit ea2c7c8c3b6e102690219912672c4be36f624ea4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 31 08:56:38 2010 +0000
| 
|     fix example path
| 
| M	doc/Doxyfile
|  
* commit 816e78a1dc06a921704fe6abd9093c985402b334
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 31 08:50:41 2010 +0000
| 
|     include configure --help and INSTALLATION text in Installation help on the web
| 
| M	doc/Doxyfile
| M	doc/Makefile
| M	doc/pages/Installation.mainpage
|  
* commit 3a7e41710bc83b3b1b33ac2b9b23b8762be9a4d8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 22:36:16 2010 +0000
| 
|     fix update-webpage
| 
| M	Makefile
|  
* commit 0d4316d412e45bfba2f40accf07c5324242a4058
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 22:17:48 2010 +0000
| 
|     Preparing for new Release shogun_0.9.2
| 
| M	doc/Doxyfile
|  
* commit 006068396b3a35d1fa80aec99c6504e30eb5cbe6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 22:14:44 2010 +0000
| 
|     updated reference documentation
| 
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
|  
* commit 1b8b1e219cc865b39dc67c0c962c9e47f7f6b492
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 21:59:48 2010 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit b716e01ec86bacfdf981f0c7a2a11efcec530998
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 21:56:55 2010 +0000
| 
|     - many further documentation improvements
|     - fix installation of libshogun examples
| 
| M	doc/pages/ExamplesLibshogun.mainpage
| M	doc/pages/ExamplesModularOctave.mainpage
| M	doc/pages/ExamplesModularPython.mainpage
| M	doc/pages/ExamplesStaticCmdline.mainpage
| M	doc/pages/ExamplesStaticOctave.mainpage
| M	doc/pages/ExamplesStaticPython.mainpage
| M	doc/pages/ExamplesStaticR.mainpage
| M	doc/pages_cn/ExamplesLibshogun.mainpage
| M	doc/pages_cn/ExamplesModularOctave.mainpage
| M	doc/pages_cn/ExamplesModularPython.mainpage
| M	doc/pages_cn/ExamplesModularR.mainpage
| M	doc/pages_cn/ExamplesStaticCmdline.mainpage
| M	doc/pages_cn/ExamplesStaticOctave.mainpage
| M	doc/pages_cn/ExamplesStaticPython.mainpage
| M	doc/pages_cn/ExamplesStaticR.mainpage
| M	examples/generate_documented.sh
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/HashedWDFeatures.h
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/SparsePolyFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/MultitaskKernelTreeNormalizer.h
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/HDF5File.h
| M	src/libshogun/lib/Hash.h
|  
* commit c77a3f95fe87f70c2033e7c5b7b6b08a5c9989e5
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Tue Mar 30 21:43:48 2010 +0000
| 
|     Documented a few more examples.
| 
| A	examples/descriptions/modular/kernel_auc.txt
| A	examples/descriptions/modular/kernel_sparse_gaussian.txt
| A	examples/descriptions/modular/kernel_sparse_linear.txt
| A	examples/descriptions/modular/kernel_sparse_poly.txt
|  
* commit e8c33fd9af06ae8672b7f70fb78e93453770ebef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 21:24:02 2010 +0000
| 
|     updated reference documentation
| 
| M	doc/Doxyfile
| M	doc/insert_examples.py
| M	doc/insert_examples_cn.py
| M	doc/pages/ExamplesModularR.mainpage
|  
* commit 016b2272cc71350e50b6887209dfa5d8e00829ab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 21:07:46 2010 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 4b49b8497e0eb378da64c3ff989b9e682f4b5e35
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 21:06:48 2010 +0000
| 
|     more documentation
| 
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/File.cpp
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/HDF5File.h
|  
* commit ea2e94723dc093fd4ca04da1932b4342fcb99be9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 18:58:24 2010 +0000
| 
|     add a gazillion of docstrings
| 
| M	src/.version.sh
| M	src/libshogun/classifier/svm/LaRank.h
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/SNPFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/WDFeatures.h
| M	src/libshogun/kernel/KernelNormalizer.h
|  
* commit 9c018e3f877e3c056cfa386711ff4e0fbe73c752
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Tue Mar 30 17:32:49 2010 +0000
| 
|     added a few missing descriptions
| 
| A	examples/descriptions/modular/distance_canberraword.txt
| A	examples/descriptions/modular/distance_hammingword.txt
| A	examples/descriptions/modular/distance_manhatten.txt
| A	examples/descriptions/modular/distance_manhattenword.txt
| A	examples/descriptions/modular/distance_sparseeuclidian.txt
| A	examples/descriptions/modular/kernel_weighted_degree_string.txt
| A	examples/descriptions/modular/serialization_svmlight.txt
|  
* commit 0ed0ddd4c632de8a9425d57f7f562bddd29e4986
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 17:04:46 2010 +0000
| 
|     workaround a compile failure on osx
| 
| M	src/Makefile.template
| M	src/configure
| M	src/libshogun/features/StringFeatures.h
|  
* commit be7a220d9dc3dee61c687a3bd8fd70076fc2a67a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 15:18:47 2010 +0000
| 
|     tests run through finally
| 
| M	src/Makefile
| M	src/Makefile.template
|  
* commit 1c1e4b716c2408ce2a41f834c4bccd2306d1f8bb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 14:53:58 2010 +0000
| 
|     don't kill default paths
| 
| M	src/Makefile.template
|  
* commit 03e9109b75e84aeb8461b55f721635a77a204ae2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 14:52:06 2010 +0000
| 
|     fix liblinear testsuite errors
| 
| M	testsuite/matlab_and_octave/util/fix_classifier_name_inconsistency.m
| M	testsuite/python_modular/classifier.py
|  
* commit a20d4e1cc5ab5d2919701ef80c18d97e128b231f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 14:36:29 2010 +0000
| 
|     cleanup out.txt
| 
| M	examples/Makefile
| M	examples/generate_documented.sh
| M	examples/undocumented/cmdline/classifier_gmnpsvm.sg
| M	examples/undocumented/cmdline/classifier_gpbtsvm.sg
| M	examples/undocumented/cmdline/classifier_knn.sg
| M	examples/undocumented/cmdline/classifier_lda.sg
| M	examples/undocumented/cmdline/classifier_liblinear.sg
| M	examples/undocumented/cmdline/classifier_libsvm.sg
| M	examples/undocumented/cmdline/classifier_libsvmmulticlass.sg
| M	examples/undocumented/cmdline/classifier_libsvmoneclass.sg
| D	examples/undocumented/cmdline/classifier_mpd.sg
| A	examples/undocumented/cmdline/classifier_mpdsvm.sg
| M	examples/undocumented/cmdline/classifier_perceptron.sg
| M	examples/undocumented/cmdline/classifier_subgradientsvm.sg
| M	examples/undocumented/cmdline/classifier_svmlight.sg
| M	examples/undocumented/cmdline/classifier_svmlin.sg
| M	examples/undocumented/cmdline/classifier_svmocas.sg
| M	examples/undocumented/cmdline/classifier_svmsgd.sg
| M	examples/undocumented/cmdline/mkl_multiclass.sg
| M	examples/undocumented/cmdline/regression_krr.sg
| M	examples/undocumented/cmdline/regression_libsvr.sg
| M	examples/undocumented/cmdline/regression_svrlight.sg
|  
* commit 7adedbfb51d5754084dbdb8981f16bb3030ceae8
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Mar 30 14:34:37 2010 +0000
| 
|     -- minor changes in descriptions
| 
| M	examples/descriptions/modular/kernel_weighteddegreepositionstring.txt
| M	examples/descriptions/modular/kernel_weighteddegreestring.txt
| M	examples/descriptions/static/kernel_weighteddegreepositionstring.txt
| M	examples/descriptions/static/kernel_weighteddegreestring.txt
|  
* commit 99f6b10134b21338fbb50a50dacbe914200f5ca3
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Mar 30 14:27:00 2010 +0000
| 
|     -- some changes to descriptions
| 
| M	examples/descriptions/modular/kernel_custom.txt
| M	examples/descriptions/modular/kernel_distance.txt
| M	examples/descriptions/modular/kernel_poly.txt
| M	examples/descriptions/modular/kernel_simplelocalityimprovedstring.txt
| M	examples/descriptions/modular/kernel_weighteddegreepositionstring.txt
|  
* commit 2f3f7f5b6c01b34fcde3bc8803bcf487420a85a3
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Mar 30 14:26:56 2010 +0000
| 
|     -- descriptions for modular interface
| 
| A	examples/descriptions/modular/kernel_chi2.txt
| A	examples/descriptions/modular/kernel_combined.txt
| A	examples/descriptions/modular/kernel_commulongstring.txt
| A	examples/descriptions/modular/kernel_commwordstring.txt
| A	examples/descriptions/modular/kernel_const.txt
| A	examples/descriptions/modular/kernel_custom.txt
| A	examples/descriptions/modular/kernel_diag.txt
| A	examples/descriptions/modular/kernel_distance.txt
| A	examples/descriptions/modular/kernel_fixeddegreestring.txt
| A	examples/descriptions/modular/kernel_gaussian.txt
| A	examples/descriptions/modular/kernel_gaussianshift.txt
| A	examples/descriptions/modular/kernel_histogramword.txt
| A	examples/descriptions/modular/kernel_lik.txt
| A	examples/descriptions/modular/kernel_linear.txt
| A	examples/descriptions/modular/kernel_linearbyte.txt
| A	examples/descriptions/modular/kernel_linearstring.txt
| A	examples/descriptions/modular/kernel_linearword.txt
| A	examples/descriptions/modular/kernel_localalignmentstring.txt
| A	examples/descriptions/modular/kernel_localityimprovedstring.txt
| A	examples/descriptions/modular/kernel_oligostring.txt
| A	examples/descriptions/modular/kernel_poly.txt
| A	examples/descriptions/modular/kernel_polymatchstring.txt
| A	examples/descriptions/modular/kernel_polymatchword.txt
| A	examples/descriptions/modular/kernel_sigmoid.txt
| A	examples/descriptions/modular/kernel_simplelocalityimprovedstring.txt
| A	examples/descriptions/modular/kernel_sparsegaussian.txt
| A	examples/descriptions/modular/kernel_sparselinear.txt
| A	examples/descriptions/modular/kernel_sparsepoly.txt
| A	examples/descriptions/modular/kernel_spectrum.txt
| A	examples/descriptions/modular/kernel_weighted_spec.txt
| A	examples/descriptions/modular/kernel_weightedcommwordstring.txt
| A	examples/descriptions/modular/kernel_weighteddegreepositionstring.txt
| A	examples/descriptions/modular/kernel_weighteddegreestring.txt
|  
* commit 99a9334aa99160e39f1fc773dd9e3ec67cedaaee
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Mar 30 14:03:28 2010 +0000
| 
|     -- missing static desctiptions
| 
| A	examples/descriptions/static/kernel_lik.txt
| A	examples/descriptions/static/kernel_weighted_spec.txt
| A	examples/descriptions/static/kernel_weightedcommwordstring.txt
| A	examples/descriptions/static/kernel_weighteddegreepositionstring.txt
| A	examples/descriptions/static/kernel_weighteddegreestring.txt
|  
* commit 4dccc547d9590867d59b3eb439b67e9ad2972939
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Mar 30 13:45:46 2010 +0000
| 
|     -- more descriptions
| 
| A	examples/descriptions/static/kernel_fixeddegreestring.txt
| A	examples/descriptions/static/kernel_gaussian.txt
| A	examples/descriptions/static/kernel_gaussianshift.txt
| A	examples/descriptions/static/kernel_histogramword.txt
| A	examples/descriptions/static/kernel_sigmoid.txt
| A	examples/descriptions/static/kernel_simplelocalityimprovedstring.txt
| A	examples/descriptions/static/kernel_sparsegaussian.txt
| A	examples/descriptions/static/kernel_sparselinear.txt
| A	examples/descriptions/static/kernel_sparsepoly.txt
| A	examples/descriptions/static/kernel_spectrum.txt
|  
* commit 064c33b5c2aad53edbb553bcd33292f1a59c6714
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 13:26:56 2010 +0000
| 
|     don't transpose ascii (really really don't) and remove debug code from hdf5
| 
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/HDF5File.cpp
|  
* commit 7e5ffb335a65047d6e9f00c9b4b473a68828afbb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 13:25:55 2010 +0000
| 
|     add examples on how to r/w hdf5 files
| 
| M	examples/undocumented/python_modular/features_io_modular.py
| M	examples/undocumented/python_modular/kernel_io_modular.py
|  
* commit a9706b7c98db4829581f37118075066ba24bf864
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 13:10:23 2010 +0000
| 
|     clean up after example
| 
| M	examples/undocumented/python_modular/features_string_char_compressed_modular.py
|  
* commit 1a2ef1bc6fa9892f2954b7e3ce90f2958bc36db0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 12:59:31 2010 +0000
| 
|     fix misnamings
| 
| A	examples/descriptions/modular/classifier_domainadaptationsvm.txt
| D	examples/descriptions/modular/classifier_domainadaptationsvm_modular.txt
| A	examples/descriptions/modular/classifier_svmlight_linear_term.txt
| D	examples/descriptions/modular/classifier_svmlight_linear_term_modular.txt
| A	examples/descriptions/modular/distance_braycurtis.txt
| D	examples/descriptions/modular/distance_braycurtis_modular.txt
| A	examples/descriptions/modular/distance_canberra.txt
| D	examples/descriptions/modular/distance_canberra_modular.txt
| A	examples/descriptions/modular/distance_chebyshew.txt
| D	examples/descriptions/modular/distance_chebyshew_modular.txt
| A	examples/descriptions/modular/distance_chisquare.txt
| D	examples/descriptions/modular/distance_chisquare_modular.txt
| A	examples/descriptions/modular/distance_cosine.txt
| D	examples/descriptions/modular/distance_cosine_modular.txt
| A	examples/descriptions/modular/distance_euclidian.txt
| D	examples/descriptions/modular/distance_euclidian_modular.txt
| A	examples/descriptions/modular/distance_geodesic.txt
| D	examples/descriptions/modular/distance_geodesic_modular.txt
| A	examples/descriptions/modular/distance_jensen.txt
| D	examples/descriptions/modular/distance_jensen_modular.txt
| A	examples/descriptions/modular/distance_minkowski.txt
| D	examples/descriptions/modular/distance_minkowski_modular.txt
| A	examples/descriptions/modular/distance_tanimoto.txt
| D	examples/descriptions/modular/distance_tanimoto_modular.txt
|  
* commit c3b91534e363c5fed14078fca0016e4ae7c176ec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 12:30:18 2010 +0000
| 
|     shogun octave-modular works reliably until one exits octave. however octave
|     crashes upon exit. disable octave modular by default until swig/octave fix the
|     crasher when *unloading* modules.
| 
| M	src/NEWS
| M	src/configure
|  
* commit a9d5f2353bce6c867784f604cc82fc29c9abb169
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 12:09:27 2010 +0000
| 
|     r/w support of hdf5 matrices/vectors
| 
| M	src/.version.sh
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/HDF5File.h
|  
* commit 1cbd13e9a391dbea6689006f56431ee5118af616
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 10:51:52 2010 +0000
| 
|     set LD_LIBRARY_PATH w/ matlab
| 
| M	src/Makefile.template
|  
* commit b98fd17e882e5f516f047511fb268e510c4a1f70
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 10:42:16 2010 +0000
| 
|     prepend LD_LIBRARY_PATH
| 
| M	examples/undocumented/libshogun/Makefile
|  
* commit 3616da382610fe714e8de67f8f4464049613f01f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 05:50:38 2010 +0000
| 
|     hdf5 vector and matrix read support plus proper error handling
| 
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/HDF5File.h
|  
* commit 7c8dc10226d40630716be6e5173c96629b0fdc63
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 29 15:53:58 2010 +0000
| 
|     non-standard boolean type detection, print function for ulong vectors
| 
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/HDF5File.h
| M	src/libshogun/lib/Mathematics.cpp
|  
* commit 93161c06c9a60b81b45bac59f2a143132e9aaacb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 29 13:45:19 2010 +0000
| 
|     drafty hdf5 read support for vectors
| 
| M	src/NEWS
| M	src/libshogun/lib/HDF5File.cpp
|  
* commit 7bc715127b34f0fa0a1de3841532aee50a4839d8
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Mar 29 13:44:42 2010 +0000
| 
|     additional boost::serialization code
| 
| M	src/libshogun/lib/common.h
|  
* commit 10a662951029ecdeded285bf8cabfa118bf48367
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Mar 29 13:38:00 2010 +0000
| 
|     added MultitaskKernelMaskPairNormalizer
| 
| M	src/libshogun/kernel/Kernel.h
| A	src/libshogun/kernel/MultitaskKernelMaskPairNormalizer.h
| M	src/modular/Kernel.i
|  
* commit 240b884967a967d5e47c0071091cac4d1040f960
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Mar 29 13:33:17 2010 +0000
| 
|     added optional train factor
| 
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.h
|  
* commit b9d4c570d665fa6581c1b10112acc0c48c9a14be
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Mar 29 13:31:36 2010 +0000
| 
|     fixed minor bug
| 
| M	src/libshogun/classifier/mkl/MKL.cpp
|  
* commit f22f0771c343efdfe9aeaacd5b49da35f6c74e30
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Mar 29 13:29:49 2010 +0000
| 
|     further work on serialization code
| 
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/StringFeatures.cpp
|  
* commit 3034ddf6b33ec8504c02cb68df983c795f493664
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Mar 29 13:27:21 2010 +0000
| 
|     completed documentation for multitask mkl code
| 
| M	src/libshogun/kernel/MultitaskKernelMaskNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelMklNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelTreeNormalizer.h
|  
* commit 5272112196b7ffd7fb84f82e57ab9c0c24492a6a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 29 10:04:23 2010 +0000
| 
|     start integration of hdf5 file support
| 
| M	src/configure
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/File.cpp
| M	src/libshogun/lib/File.h
| A	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/HDF5File.h
|  
* commit a6c133d6e6472aa0f4be4c65d455acb4859aa726
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 29 08:32:29 2010 +0000
| 
|     load/write of sparse features of arbitrary type
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/File.h
|  
* commit 52992ee1d3a06b5ff93ed3d2065a3e8c28ccabb3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 29 08:32:09 2010 +0000
| 
|     show how sparse features can be read/written
| 
| M	examples/undocumented/python_modular/features_io_modular.py
|  
* commit 5a236327749e6904fdf15297a430aecd04f5447d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 29 06:32:35 2010 +0000
| 
|     show ascii loading
| 
| M	examples/undocumented/python_modular/features_io_modular.py
|  
* commit b85d970d887026aa15b59679a5ae2fcac6948d29
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 28 21:48:14 2010 +0000
| 
|     support loading/writing of labels
| 
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogun/lib/AsciiFile.cpp
|  
* commit abc78634186b3ebd150b51e22922524800c12778
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 28 21:48:00 2010 +0000
| 
|     add examples on how to load kernel/labels/features
| 
| A	examples/undocumented/python_modular/features_io_modular.py
| A	examples/undocumented/python_modular/kernel_io_modular.py
|  
* commit bc62dda1b4aae22b67d0d77d3f72b67dd486a3f6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 28 20:52:34 2010 +0000
| 
|     set/get functions for vectors/strings
| 
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/File.h
|  
* commit bc9487b4c107541d877b46c8e704833b8380b257
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Mar 27 20:57:09 2010 +0000
| 
|     implement binary vector GET function
| 
| M	src/libshogun/lib/BinaryFile.cpp
|  
* commit 93bfd88a0270f9ae88b8e03e3ac6f0f761ea8baa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 26 21:07:58 2010 +0000
| 
|     support for basic reading/writing of binary matrices
| 
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/File.h
|  
* commit abbc4f2695ae95c28bd43f705e27b088f79826e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 26 14:58:53 2010 +0000
| 
|     template for binary i/o
| 
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/modular/Library.i
|  
* commit e332fc97a336b8b0a8a46480c520fbcf1c2cddfe
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 26 13:00:26 2010 +0000
| 
|     ascii file i/o seems to work now
| 
| M	src/libshogun/kernel/Kernel.cpp
| M	src/modular/Library.i
|  
* commit 020122193bf52c7d520115ab682d846b53b40b87
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 26 11:10:57 2010 +0000
| 
|     modify tests to use liblinear defaults
| 
| M	testsuite/matlab_and_octave/util/fix_classifier_name_inconsistency.m
| M	testsuite/octave_modular/classifier.m
| M	testsuite/python_modular/classifier.py
| M	testsuite/r_modular/classifier.R
|  
* commit 4ac1f12b80866ec69b8d37dc5f5888e7b9150d93
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 26 11:09:28 2010 +0000
| 
|     transpose labels too
| 
| M	data/label_train_dna.dat
| M	data/label_train_dna42.dat
| M	data/label_train_multiclass.dat
| M	data/label_train_twoclass.dat
|  
* commit 052bae6bd73effb0ded2356aa61e17655441a0f0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 26 11:09:18 2010 +0000
| 
|     fix examples to work with transposed data
| 
| M	examples/undocumented/matlab_and_octave/tools/load_matrix.m
| D	examples/undocumented/matlab_and_octave/tools/read_feature_matrix.m
| M	examples/undocumented/r/classifier_gmnpsvm.R
| M	examples/undocumented/r/classifier_gpbtsvm.R
| M	examples/undocumented/r/classifier_knn.R
| M	examples/undocumented/r/classifier_lda.R
| M	examples/undocumented/r/classifier_libsvm.R
| M	examples/undocumented/r/classifier_libsvmmulticlass.R
| M	examples/undocumented/r/classifier_libsvmoneclass.R
| M	examples/undocumented/r/classifier_mpdsvm.R
| M	examples/undocumented/r/clustering_hierarchical.R
| M	examples/undocumented/r/distance_braycurtis.R
| M	examples/undocumented/r/distance_canberra.R
| M	examples/undocumented/r/distance_chebyshew.R
| M	examples/undocumented/r/distance_chisquare.R
| M	examples/undocumented/r/distance_cosine.R
| M	examples/undocumented/r/distance_euclidian.R
| M	examples/undocumented/r/distance_geodesic.R
| M	examples/undocumented/r/distance_jensen.R
| M	examples/undocumented/r/distance_manhatten.R
| M	examples/undocumented/r/distance_minkowski.R
| M	examples/undocumented/r/distance_tanimoto.R
| M	examples/undocumented/r/kernel_chi2.R
| M	examples/undocumented/r/kernel_combined.R
| M	examples/undocumented/r/kernel_distancetokernel.R
| M	examples/undocumented/r/kernel_gaussian.R
| M	examples/undocumented/r/kernel_gaussianshift.R
| M	examples/undocumented/r/kernel_linear.R
| M	examples/undocumented/r/kernel_poly.R
| M	examples/undocumented/r/kernel_sigmoid.R
| M	examples/undocumented/r/mkl_multiclass.R
| M	examples/undocumented/r/preproc_logplusone.R
| M	examples/undocumented/r/preproc_normone.R
| M	examples/undocumented/r/regression_krr.R
| M	examples/undocumented/r/regression_libsvr.R
|  
* commit a62988148fde6fd5496ebdcad666cc4952c9e8a7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 26 11:08:33 2010 +0000
| 
|     fix erraneous close when file is not opened and warnings caused by wrong fprintf format strings
| 
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/AsciiFile.cpp
|  
* commit c6c67300b6e774c14695eb1791af4f106432f7fc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 26 10:05:38 2010 +0000
| 
|     all features read from ascii files are transposed now (one example == one line): so change examples accordingly
| 
| M	data/fm_test_byte.dat
| A	data/fm_test_byte_transposed.dat
| M	data/fm_test_real.dat
| A	data/fm_test_real_transposed.dat
| M	data/fm_test_word.dat
| A	data/fm_test_word_transposed.dat
| M	data/fm_train_byte.dat
| A	data/fm_train_byte_transposed.dat
| M	data/fm_train_real.dat
| A	data/fm_train_real_transposed.dat
| M	data/fm_train_word.dat
| A	data/fm_train_word_transposed.dat
| M	src/libshogun/lib/AsciiFile.h
|  
* commit 24e4463a6abd473dfa5e0d57897f361a13fbd877
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 26 09:52:15 2010 +0000
| 
|     consolidate i/o functions
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/File.cpp
| M	src/libshogun/lib/File.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit ed1246d10b235d1d7ed547cd39ba9ef1bfc46f68
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 25 19:37:40 2010 +0000
| 
|     implement loading of dense matrices
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
|  
* commit 1ba833331cf63ceaab95fee215268ca95ec27bdd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 25 16:59:15 2010 +0000
| 
|     inital (dysfunctional) commit starting to use the generalized access functions in CFile
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/libshogun/distance/Distance.cpp
| M	src/libshogun/distance/Distance.h
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| A	src/libshogun/lib/AsciiFile.cpp
| A	src/libshogun/lib/AsciiFile.h
| A	src/libshogun/lib/BinaryFile.cpp
| A	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/File.cpp
| M	src/libshogun/lib/File.h
| A	src/libshogun/lib/HDF5File.h
| A	src/libshogun/lib/LibSVMFile.h
| M	src/libshogunui/GUIDistance.cpp
| M	src/libshogunui/GUIFeatures.cpp
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/GUILabels.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit e0774953597fce46c144534478eebbf560357189
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 22 16:33:32 2010 +0000
| 
|     poly kernel was correct / fixes brown paper back commit
| 
| M	src/libshogun/kernel/PolyKernel.cpp
|  
* commit ad4a72b0b788c88d742641d79070cb3dc8a5ba6f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 19 22:52:51 2010 +0000
| 
|     add function to retrieve tube epsilon
| 
| M	src/libshogun/classifier/svm/SVM.h
|  
* commit a82139f878573277e95b5ddeb8e39c1ef7937bf9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 19 22:42:40 2010 +0000
| 
|     minor whitespace cleanup & init kernel normalizer when features are already available
| 
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelMklNormalizer.h
|  
* commit b9366fd7b85b442faa97df68b2dded00cc253a9e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 19 12:19:48 2010 +0000
| 
|     - add error handling on load_ascii_file
|     - add SNP alphabet
|     - require SNP alphabet in SNP features
| 
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/SNPFeatures.cpp
| M	src/libshogun/features/StringFeatures.h
|  
* commit e16aae7053c222dfc5858f96575e61db71e97a2f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 19 10:49:58 2010 +0000
| 
|     add snp feature exampel
| 
| A	examples/undocumented/python_modular/features_snp_modular.py
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/SNPFeatures.cpp
| M	src/libshogun/features/SNPFeatures.h
|  
* commit aaee3e088b011014ae2fa0e80c6a08b637685e31
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 18 19:51:57 2010 +0000
| 
|     start implementing SNP features
| 
| A	src/libshogun/features/SNPFeatures.cpp
| A	src/libshogun/features/SNPFeatures.h
| M	src/libshogun/kernel/SNPStringKernel.h
| M	src/modular/Features.i
|  
* commit df99b7ad8236ba81ff962736d1ed4d45aa6ef210
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 18 15:42:41 2010 +0000
| 
|     include RAWDIGITS etc alphabets and generalize load_dna_file to load_ascii_file in stringfreatures
| 
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit 95861de954fbeebbe134200bdf646f5487fd0ffa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 18 15:34:44 2010 +0000
| 
|     split up svn-tag-release as suggested by Yaroslav
| 
| M	Makefile
|  
* commit 400672b5fd0f48407eb5190b0b43534c9aebd116
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 18 13:00:10 2010 +0000
| 
|     add DIGIT and DIGIT2 alphabet
| 
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/kernel/PolyMatchStringKernel.h
|  
* commit 76f45619e1a5b8def8be7a691f62a30aa971190d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 18 05:03:11 2010 +0000
| 
|     apply patch from Yaroslav Halchenko that adds versions when building within a git-svn tracked source
| 
| M	src/.version.sh
|  
* commit 8c322abdcda718caaa2f5b69f68dbb1d045a50ee
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 17 09:44:23 2010 +0000
| 
|     integrate hagens gaussian match str kernel
| 
| A	src/libshogun/kernel/GaussianMatchStringKernel.cpp
| A	src/libshogun/kernel/GaussianMatchStringKernel.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/PolyMatchStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchStringKernel.h
| M	src/modular/Kernel.i
|  
* commit c6dd183e8f66535eea9be682c90768cf927f4de6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 17 09:38:42 2010 +0000
| 
|     fix use of combined weight
| 
| M	src/libshogun/features/CombinedDotFeatures.h
|  
* commit 31b1e71e6aafc56f6f35b964b1033b1946b50de9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 11 16:02:03 2010 +0000
| 
|     fix bug in poly kernel when inhomog. kernel was used
| 
| M	src/libshogun/kernel/PolyKernel.cpp
|  
* commit 4cb94b142931323ec4ee89f541224351c71abc42
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Mar 11 10:47:46 2010 +0000
| 
|     -- more descriptions
| 
| A	examples/descriptions/static/kernel_diag.txt
| A	examples/descriptions/static/kernel_distance.txt
|  
* commit 268af93293cf285cad7a38f03deb734605a281c4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 10 18:51:48 2010 +0000
| 
|     show how to get/set subkernel weights
| 
| M	examples/undocumented/python_modular/mkl_binclass_modular.py
|  
* commit 1ce22ffa4490c4c4fed962bb2c745c46bb91c80b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 10 17:52:31 2010 +0000
| 
|     - fix a crasher in LaRank
|     - fix set_subkernel_weights
| 
| M	src/libshogun/classifier/svm/LaRank.h
| M	src/modular/Kernel.i
|  
* commit 2126b3370c8b38c86e461742d47177349be557b6
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Fri Mar 5 21:47:30 2010 +0000
| 
|     added description for modular distance examples 'REAL'
| 
| A	examples/descriptions/modular/distance_braycurtis_modular.txt
| A	examples/descriptions/modular/distance_canberra_modular.txt
| A	examples/descriptions/modular/distance_chebyshew_modular.txt
| A	examples/descriptions/modular/distance_chisquare_modular.txt
| A	examples/descriptions/modular/distance_cosine_modular.txt
| A	examples/descriptions/modular/distance_euclidian_modular.txt
| A	examples/descriptions/modular/distance_geodesic_modular.txt
| A	examples/descriptions/modular/distance_jensen_modular.txt
| A	examples/descriptions/modular/distance_minkowski_modular.txt
| A	examples/descriptions/modular/distance_tanimoto_modular.txt
|  
* commit e2d6de632e088587ce585cc38f35d36804998436
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Mar 5 15:53:35 2010 +0000
| 
|     minor fixes
| 
| M	examples/undocumented/python_modular/classifier_domainadaptationsvm_modular.py
| M	examples/undocumented/python_modular/classifier_svmlight_linear_term_modular.py
|  
* commit 6bb345144a33bf47beccd5e31f0eb431d770a66e
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Mar 5 15:53:15 2010 +0000
| 
|     desciptions for domain adaptation related examples
| 
| A	examples/descriptions/modular/classifier_domainadaptationsvm_modular.txt
| A	examples/descriptions/modular/classifier_svmlight_linear_term_modular.txt
|  
* commit d4ad16cdcdaf50aa59db440d995f0b3d98f7660b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 3 21:18:47 2010 +0000
| 
|     rename all kernels_* to kernel_*
| 
| A	examples/descriptions/static/kernel_chi2.txt
| A	examples/descriptions/static/kernel_combined.txt
| A	examples/descriptions/static/kernel_commulongstring.txt
| A	examples/descriptions/static/kernel_commwordstring.txt
| A	examples/descriptions/static/kernel_const.txt
| A	examples/descriptions/static/kernel_custom.txt
| A	examples/descriptions/static/kernel_linear.txt
| A	examples/descriptions/static/kernel_linearbyte.txt
| A	examples/descriptions/static/kernel_linearstring.txt
| A	examples/descriptions/static/kernel_linearword.txt
| A	examples/descriptions/static/kernel_localalignmentstring.txt
| A	examples/descriptions/static/kernel_localityimprovedstring.txt
| A	examples/descriptions/static/kernel_oligostring.txt
| A	examples/descriptions/static/kernel_poly.txt
| A	examples/descriptions/static/kernel_polymatchstring.txt
| A	examples/descriptions/static/kernel_polymatchword.txt
| D	examples/descriptions/static/kernels_chi2.txt
| D	examples/descriptions/static/kernels_combined.txt
| D	examples/descriptions/static/kernels_commulongstring.txt
| D	examples/descriptions/static/kernels_commwordstring.txt
| D	examples/descriptions/static/kernels_const.txt
| D	examples/descriptions/static/kernels_custom.txt
| D	examples/descriptions/static/kernels_linear.txt
| D	examples/descriptions/static/kernels_linearbyte.txt
| D	examples/descriptions/static/kernels_linearstring.txt
| D	examples/descriptions/static/kernels_linearword.txt
| D	examples/descriptions/static/kernels_localalignmentstring.txt
| D	examples/descriptions/static/kernels_localityimprovedstring.txt
| D	examples/descriptions/static/kernels_oligostring.txt
| D	examples/descriptions/static/kernels_poly.txt
| D	examples/descriptions/static/kernels_polymatchstring.txt
| D	examples/descriptions/static/kernels_polymatchword.txt
| A	examples/undocumented/matlab_and_octave/kernel_chi2.m
| A	examples/undocumented/matlab_and_octave/kernel_combined.m
| A	examples/undocumented/matlab_and_octave/kernel_commulongstring.m
| A	examples/undocumented/matlab_and_octave/kernel_commwordstring.m
| A	examples/undocumented/matlab_and_octave/kernel_const.m
| A	examples/undocumented/matlab_and_octave/kernel_custom.m
| A	examples/undocumented/matlab_and_octave/kernel_diag.m
| A	examples/undocumented/matlab_and_octave/kernel_distance.m
| A	examples/undocumented/matlab_and_octave/kernel_fixeddegreestring.m
| A	examples/undocumented/matlab_and_octave/kernel_gaussian.m
| A	examples/undocumented/matlab_and_octave/kernel_gaussianshift.m
| A	examples/undocumented/matlab_and_octave/kernel_histogramword.m
| A	examples/undocumented/matlab_and_octave/kernel_lik.m
| A	examples/undocumented/matlab_and_octave/kernel_linear.m
| A	examples/undocumented/matlab_and_octave/kernel_linearbyte.m
| A	examples/undocumented/matlab_and_octave/kernel_linearstring.m
| A	examples/undocumented/matlab_and_octave/kernel_linearword.m
| A	examples/undocumented/matlab_and_octave/kernel_localalignmentstring.m
| A	examples/undocumented/matlab_and_octave/kernel_localityimprovedstring.m
| A	examples/undocumented/matlab_and_octave/kernel_oligostring.m
| A	examples/undocumented/matlab_and_octave/kernel_poly.m
| A	examples/undocumented/matlab_and_octave/kernel_polymatchstring.m
| A	examples/undocumented/matlab_and_octave/kernel_polymatchword.m
| A	examples/undocumented/matlab_and_octave/kernel_sigmoid.m
| A	examples/undocumented/matlab_and_octave/kernel_simplelocalityimprovedstring.m
| A	examples/undocumented/matlab_and_octave/kernel_sparsegaussian.m
| A	examples/undocumented/matlab_and_octave/kernel_sparselinear.m
| A	examples/undocumented/matlab_and_octave/kernel_sparsepoly.m
| A	examples/undocumented/matlab_and_octave/kernel_spectrum.m
| A	examples/undocumented/matlab_and_octave/kernel_weighted_spec.m
| A	examples/undocumented/matlab_and_octave/kernel_weightedcommwordstring.m
| A	examples/undocumented/matlab_and_octave/kernel_weighteddegreepositionstring.m
| A	examples/undocumented/matlab_and_octave/kernel_weighteddegreestring.m
| D	examples/undocumented/matlab_and_octave/kernels_chi2.m
| D	examples/undocumented/matlab_and_octave/kernels_combined.m
| D	examples/undocumented/matlab_and_octave/kernels_commulongstring.m
| D	examples/undocumented/matlab_and_octave/kernels_commwordstring.m
| D	examples/undocumented/matlab_and_octave/kernels_const.m
| D	examples/undocumented/matlab_and_octave/kernels_custom.m
| D	examples/undocumented/matlab_and_octave/kernels_diag.m
| D	examples/undocumented/matlab_and_octave/kernels_distance.m
| D	examples/undocumented/matlab_and_octave/kernels_fixeddegreestring.m
| D	examples/undocumented/matlab_and_octave/kernels_gaussian.m
| D	examples/undocumented/matlab_and_octave/kernels_gaussianshift.m
| D	examples/undocumented/matlab_and_octave/kernels_histogramword.m
| D	examples/undocumented/matlab_and_octave/kernels_lik.m
| D	examples/undocumented/matlab_and_octave/kernels_linear.m
| D	examples/undocumented/matlab_and_octave/kernels_linearbyte.m
| D	examples/undocumented/matlab_and_octave/kernels_linearstring.m
| D	examples/undocumented/matlab_and_octave/kernels_linearword.m
| D	examples/undocumented/matlab_and_octave/kernels_localalignmentstring.m
| D	examples/undocumented/matlab_and_octave/kernels_localityimprovedstring.m
| D	examples/undocumented/matlab_and_octave/kernels_oligostring.m
| D	examples/undocumented/matlab_and_octave/kernels_poly.m
| D	examples/undocumented/matlab_and_octave/kernels_polymatchstring.m
| D	examples/undocumented/matlab_and_octave/kernels_polymatchword.m
| D	examples/undocumented/matlab_and_octave/kernels_sigmoid.m
| D	examples/undocumented/matlab_and_octave/kernels_simplelocalityimprovedstring.m
| D	examples/undocumented/matlab_and_octave/kernels_sparsegaussian.m
| D	examples/undocumented/matlab_and_octave/kernels_sparselinear.m
| D	examples/undocumented/matlab_and_octave/kernels_sparsepoly.m
| D	examples/undocumented/matlab_and_octave/kernels_spectrum.m
| D	examples/undocumented/matlab_and_octave/kernels_weighted_spec.m
| D	examples/undocumented/matlab_and_octave/kernels_weightedcommwordstring.m
| D	examples/undocumented/matlab_and_octave/kernels_weighteddegreepositionstring.m
| D	examples/undocumented/matlab_and_octave/kernels_weighteddegreestring.m
| M	examples/undocumented/python/kernel_linearbyte.py
|  
* commit d7df314cf2690d14b0a56b9440afcc4f18685aac
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Mar 3 15:46:25 2010 +0000
| 
|     -- included a check that the size of the segment_mask corresponds to the size of
|     	the observation matrix. To do that I had to set the observation matrix before the
|     	segment_mask in all interfaces
| 
| M	examples/undocumented/python_modular/structure_dynprog_modular.py
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit ffa83b39a3f14f42b49c30145ae4e8f9b5c7f3d3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 3 15:14:22 2010 +0000
| 
|     gzip compress example
| 
| D	data/DynProg_example_py.dat.mat_pickle
| A	data/DynProg_example_py.pickle.gz
|  
* commit 4379b56c701a6cded7ff34e951d77ffa7d8b6ace
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 3 15:13:55 2010 +0000
| 
|     use pickle to load example
| 
| M	examples/undocumented/python_modular/structure_dynprog_modular.py
|  
* commit 667c9cc8a7deed088c2d6bd2de07e02c4a24f8ec
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Mar 3 14:55:44 2010 +0000
| 
|     -- new example
| 
| A	data/DynProg_example_py.dat.mat_pickle
|  
* commit 7c0c486b85103b149690f2ec8a2dc93528ba1df8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 3 08:44:55 2010 +0000
| 
|     update FAQ to say yes windows works partially but octave_modular now crashes
| 
| M	doc/pages/FAQ.mainpage
|  
* commit 74d82888ff82103c21a87e044b3bca431ff6333d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 3 08:05:56 2010 +0000
| 
|     fix mkl twoclass/liblinear example
| 
| M	examples/undocumented/cmdline/classifier_liblinear.sg
| M	examples/undocumented/python_modular/mkl_binclass_modular.py
|  
* commit f9fb9f745932dc4f446210d3d6b814f559da7299
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Tue Mar 2 14:27:41 2010 +0000
| 
|     examples/undocumneted/matlab/tools/README converted to Matlab redable Contents.m
| 
| A	examples/undocumented/matlab_and_octave/tools/Contents.m
|  
* commit 2eda46774fa39685148cb0ff6ff3cc0902613247
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Tue Mar 2 14:19:24 2010 +0000
| 
|     svmsgd_modular example updated also for R and octave
| 
| M	examples/undocumented/octave_modular/classifier_svmsgd_modular.m
| M	examples/undocumented/r_modular/classifier_svmsgd_modular.R
|  
* commit b3427b320df64d719fb42f04a5121fb0504524d9
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Tue Mar 2 14:11:33 2010 +0000
| 
|     classifier_svmsgd (moduar): epsilon removed and replaced with set_epoches
| 
| M	examples/descriptions/modular/classifier_svmsgd.txt
| M	examples/undocumented/python/classifier_lda.py
| M	examples/undocumented/python_modular/classifier_svmsgd_modular.py
|  
* commit f2dbbd888d28ad496f8619eca3f37eb50cdfe084
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 2 14:04:54 2010 +0000
| 
|     also copy tools directory to get the examples to run reliably
| 
| M	examples/generate_documented.sh
|  
* commit f2be346a8757e040cad740d2e2a3b64cd53ef632
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 2 14:04:30 2010 +0000
| 
|     update docu/install instructions based on vojtechs comments
| 
| M	src/INSTALL
| M	src/libshogunui/SGInterface.cpp
|  
* commit 7311f8ac4141702a06c0b45ea6c640df2c19675b
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Tue Mar 2 13:22:47 2010 +0000
| 
|     small mistakes fixed
| 
| M	examples/descriptions/static/classifier_gmnpsvm.txt
| M	examples/descriptions/static/classifier_gpbtsvm.txt
| M	examples/descriptions/static/classifier_lda.txt
| M	examples/descriptions/static/classifier_liblinear.txt
| M	examples/descriptions/static/classifier_liblinear_objective.txt
| M	examples/descriptions/static/classifier_libsvm.txt
| M	examples/descriptions/static/classifier_libsvmmulticlass.txt
| M	examples/descriptions/static/classifier_lpm.txt
| M	examples/descriptions/static/classifier_mpdsvm.txt
| M	examples/descriptions/static/classifier_perceptron.txt
| M	examples/descriptions/static/classifier_subgradientsvm.txt
| M	examples/descriptions/static/classifier_svmlight_wdkernel.txt
| M	examples/descriptions/static/classifier_svmlight_wds_batch.txt
| M	examples/descriptions/static/classifier_svmlin.txt
| M	examples/descriptions/static/classifier_svmocas.txt
| M	examples/descriptions/static/classifier_svmsgd_objective.txt
|  
* commit 1041f0424fa46150fcca5b3ffc64f7b6e0f82b12
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Tue Mar 2 13:06:09 2010 +0000
| 
|     documentation of modular classification examples finished
| 
| A	examples/descriptions/modular/classifier_perceptron.txt
| A	examples/descriptions/modular/classifier_subgradientsvm.txt
| A	examples/descriptions/modular/classifier_svmlight.txt
| A	examples/descriptions/modular/classifier_svmlight_batch_linadd.txt
| A	examples/descriptions/modular/classifier_svmlin.txt
| A	examples/descriptions/modular/classifier_svmocas.txt
| A	examples/descriptions/modular/classifier_svmsgd.txt
| M	examples/descriptions/static/classifier_libsvmoneclass.txt
| M	examples/descriptions/static/classifier_svmlight.txt
|  
* commit 469dc2d3143cf416ac02cb97f840502acaab2d61
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 2 12:16:22 2010 +0000
| 
|     renaming of classifiers
| 
| A	examples/descriptions/modular/classifier_gpbtsvm.txt
| D	examples/descriptions/modular/classifier_gpbtsvm_modular.txt
| A	examples/descriptions/modular/classifier_knn.txt
| D	examples/descriptions/modular/classifier_knn_modular.txt
| A	examples/descriptions/modular/classifier_larank.txt
| D	examples/descriptions/modular/classifier_larank_modular.txt
| A	examples/descriptions/modular/classifier_lda.txt
| D	examples/descriptions/modular/classifier_lda_modular.txt
| A	examples/descriptions/modular/classifier_liblinear.txt
| D	examples/descriptions/modular/classifier_liblinear_modular.txt
| A	examples/descriptions/modular/classifier_libsvm.txt
| A	examples/descriptions/modular/classifier_libsvm_minimal.txt
| D	examples/descriptions/modular/classifier_libsvm_minimal_modular.txt
| D	examples/descriptions/modular/classifier_libsvm_modular.txt
| A	examples/descriptions/modular/classifier_libsvmmulticlass.txt
| D	examples/descriptions/modular/classifier_libsvmmulticlass_modular.txt
| A	examples/descriptions/modular/classifier_libsvmoneclass.txt
| D	examples/descriptions/modular/classifier_libsvmoneclass_modular.txt
| A	examples/descriptions/modular/classifier_mpdsvm.txt
| D	examples/descriptions/modular/classifier_mpdsvm_modular.txt
|  
* commit 14867ff1a5ce6fc552ad2ca375f93540c629d845
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 2 12:13:50 2010 +0000
| 
|     rename files to match what is expected as input
| 
| A	examples/descriptions/modular/classifier_custom_kernel.txt
| D	examples/descriptions/modular/classifier_custom_kernel_modular.txt
| A	examples/descriptions/modular/classifier_gmnpsvm.txt
| D	examples/descriptions/modular/classifier_gmnpsvm_modular.txt
| A	examples/descriptions/modular/features_read_svmlight_format.txt
| D	examples/descriptions/modular/features_read_svmlight_format_modular
| A	examples/descriptions/modular/features_simple.txt
| A	examples/descriptions/modular/features_simple_byte.txt
| D	examples/descriptions/modular/features_simple_byte_modular
| A	examples/descriptions/modular/features_simple_longint.txt
| D	examples/descriptions/modular/features_simple_longint_modular
| D	examples/descriptions/modular/features_simple_modular
| A	examples/descriptions/modular/features_simple_real.txt
| D	examples/descriptions/modular/features_simple_real_modular
| A	examples/descriptions/modular/features_sparse.txt
| D	examples/descriptions/modular/features_sparse_modular
| A	examples/descriptions/modular/features_string_char.txt
| A	examples/descriptions/modular/features_string_char_compressed.txt
| D	examples/descriptions/modular/features_string_char_compressed_modular
| D	examples/descriptions/modular/features_string_char_modular
| A	examples/descriptions/modular/features_string_file.txt
| A	examples/descriptions/modular/features_string_file_char.txt
| D	examples/descriptions/modular/features_string_file_char_modular
| D	examples/descriptions/modular/features_string_file_modular
| A	examples/descriptions/modular/features_string_sliding_window.txt
| D	examples/descriptions/modular/features_string_sliding_window_modular
| A	examples/descriptions/modular/features_string_ulong.txt
| D	examples/descriptions/modular/features_string_ulong_modular
| A	examples/descriptions/modular/features_string_word.txt
| D	examples/descriptions/modular/features_string_word_modular
| A	examples/descriptions/modular/mkl_binclass.txt
| D	examples/descriptions/modular/mkl_binclass_modular
| A	examples/descriptions/modular/mkl_multiclass.txt
| D	examples/descriptions/modular/mkl_multiclass_modular
|  
* commit 8a0240a9cdbdb11a742c9f6d20e682f0779b1b48
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Tue Mar 2 12:12:50 2010 +0000
| 
|     added new descriptions of modular examples
| 
| A	examples/descriptions/modular/classifier_gpbtsvm_modular.txt
| A	examples/descriptions/modular/classifier_knn_modular.txt
| A	examples/descriptions/modular/classifier_larank_modular.txt
| A	examples/descriptions/modular/classifier_lda_modular.txt
| A	examples/descriptions/modular/classifier_liblinear_modular.txt
| A	examples/descriptions/modular/classifier_libsvm_minimal_modular.txt
| A	examples/descriptions/modular/classifier_libsvm_modular.txt
| A	examples/descriptions/modular/classifier_libsvmmulticlass_modular.txt
| A	examples/descriptions/modular/classifier_libsvmoneclass_modular.txt
| A	examples/descriptions/modular/classifier_mpdsvm_modular.txt
|  
* commit 05f90ab61266ccb70e2df97edf30eece745ed1e8
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Mar 2 11:36:59 2010 +0000
| 
|     -- one more
| 
| A	examples/descriptions/static/kernels_commwordstring.txt
|  
* commit a9ec3f55d65cc2234c3ae7676f97bcb6ea636a71
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Mar 2 11:36:55 2010 +0000
| 
|     -- more descriptions
| 
| A	examples/descriptions/static/kernels_const.txt
| A	examples/descriptions/static/kernels_custom.txt
|  
* commit 61fb502fc4edb4aacbee2f951ab51d2b34a2670f
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Tue Mar 2 11:23:12 2010 +0000
| 
|     + removed parts that refered to modular interface
| 
| M	examples/descriptions/static/distribution_hmm.txt
| M	examples/descriptions/static/regression_krr.txt
| M	examples/descriptions/static/regression_libsvr.txt
| M	examples/descriptions/static/regression_svrlight.txt
|  
* commit 8952d7e29b273ebf0b80123f19ace1ae52204f0f
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Tue Mar 2 11:18:53 2010 +0000
| 
|     + added modular decriptions
|     + have to change statis descriptions where examples differ
| 
| A	examples/descriptions/modular/clustering_hierarchical.txt
| A	examples/descriptions/modular/clustering_kmeans.txt
| A	examples/descriptions/modular/distribution_histogram.txt
| A	examples/descriptions/modular/distribution_hmm.txt
| A	examples/descriptions/modular/distribution_linear_hmm.txt
| A	examples/descriptions/modular/preproc_logplusone.txt
| A	examples/descriptions/modular/preproc_normone.txt
| A	examples/descriptions/modular/preproc_prunevarsubmean.txt
| A	examples/descriptions/modular/preproc_sortulongstring.txt
| A	examples/descriptions/modular/preproc_sortwordstring.txt
| A	examples/descriptions/modular/regression_krr.txt
| A	examples/descriptions/modular/regression_libsvr.txt
| A	examples/descriptions/modular/regression_svrlight.txt
|  
* commit 2defc3406c6e14dd10d178259648b60b064a5e68
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Tue Mar 2 11:12:38 2010 +0000
| 
|     first two modular examples documented
| 
| A	examples/descriptions/modular/classifier_custom_kernel_modular.txt
| A	examples/descriptions/modular/classifier_gmnpsvm_modular.txt
|  
* commit e0143f49e607ab0e99de67c28980c9aa4a9c01f7
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Tue Mar 2 10:52:43 2010 +0000
| 
|     added new descriptions of static examples
| 
| A	examples/descriptions/static/classifier_lda.txt
| A	examples/descriptions/static/classifier_liblinear.txt
| A	examples/descriptions/static/classifier_liblinear_objective.txt
| A	examples/descriptions/static/classifier_lpboost.txt
| A	examples/descriptions/static/classifier_lpm.txt
| M	examples/descriptions/static/classifier_svmocas_objective.txt
|  
* commit 8d4ec1a795fcc9d7240418b1d27b63e81fe6f7c4
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Mar 1 17:06:33 2010 +0000
| 
|     fixed a few examples, in particular the MKL example didn't do the right thing
| 
| M	examples/undocumented/python_modular/features_string_file_char_modular.py
| M	examples/undocumented/python_modular/mkl_binclass_modular.py
| M	examples/undocumented/python_modular/mkl_multiclass_modular.py
|  
* commit 1ca14da4bc84c23ef770d08f5c7864ef08114597
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Mar 1 17:04:50 2010 +0000
| 
|     added docs for modular mkl examples
| 
| A	examples/descriptions/modular/mkl_binclass_modular
| A	examples/descriptions/modular/mkl_multiclass_modular
|  
* commit 5ed503f8aae8452c8b2be9429035c51e974ad74a
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Mar 1 16:12:22 2010 +0000
| 
|     documentation of features for modular examples
| 
| A	examples/descriptions/modular/features_read_svmlight_format_modular
| A	examples/descriptions/modular/features_simple_byte_modular
| A	examples/descriptions/modular/features_simple_longint_modular
| A	examples/descriptions/modular/features_simple_modular
| A	examples/descriptions/modular/features_simple_real_modular
| A	examples/descriptions/modular/features_sparse_modular
| A	examples/descriptions/modular/features_string_char_compressed_modular
| A	examples/descriptions/modular/features_string_char_modular
| A	examples/descriptions/modular/features_string_file_char_modular
| A	examples/descriptions/modular/features_string_file_modular
| A	examples/descriptions/modular/features_string_sliding_window_modular
| A	examples/descriptions/modular/features_string_ulong_modular
| A	examples/descriptions/modular/features_string_word_modular
|  
* commit e26a8007ae8e6c30e003d509b79c8e51d2a898f9
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Mon Mar 1 15:52:37 2010 +0000
| 
|     added update of distance example
| 
| M	examples/descriptions/static/distance_braycurtis.txt
| M	examples/descriptions/static/distance_canberra.txt
| A	examples/descriptions/static/distance_canberraword.txt
| M	examples/descriptions/static/distance_chebyshew.txt
| M	examples/descriptions/static/distance_chisquare.txt
| M	examples/descriptions/static/distance_cosine.txt
| M	examples/descriptions/static/distance_euclidian.txt
| M	examples/descriptions/static/distance_geodesic.txt
| A	examples/descriptions/static/distance_hammingword.txt
| M	examples/descriptions/static/distance_jensen.txt
| M	examples/descriptions/static/distance_manhatten.txt
| A	examples/descriptions/static/distance_manhattenword.txt
| M	examples/descriptions/static/distance_minkowski.txt
| M	examples/descriptions/static/distance_tanimoto.txt
|  
* commit 2d78ef52d53c4152632dd08e29c6d6e0c0b5d20b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 1 14:24:37 2010 +0000
| 
|     explain which python packages need to be installed and fix configure to fail when python is requrested but not installed
| 
| M	src/INSTALL
| M	src/configure
|  
* commit 4635134d3ccbfdbbd2e725814967b76e9139df9f
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Mar 1 14:24:07 2010 +0000
| 
|     + added missing descriptions
|     + corrected some spelling errors
| 
| A	examples/descriptions/static/clustering_hierarchical.txt
| A	examples/descriptions/static/distribution_histogram.txt
| M	examples/descriptions/static/preproc_logplusone.txt
| A	examples/descriptions/static/preproc_normone.txt
| M	examples/descriptions/static/preproc_prunevarsubmean.txt
| A	examples/descriptions/static/preproc_sortulongstring.txt
| M	examples/descriptions/static/preproc_sortwordstring.txt
|  
* commit fa8306c3c982bc4a4c34a70f92f0be06b43f30e9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 1 13:36:50 2010 +0000
| 
|     fix typo
| 
| M	src/libshogun/preproc/LogPlusOne.h
|  
* commit d99e3d790078f5f5db52e8d43d314ad90b3b2d0e
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Mar 1 10:53:34 2010 +0000
| 
|     + only short description of preproc chi2 kernel
|     + preproc info is missing
| 
| A	examples/descriptions/static/preproc_logplusone.txt
| A	examples/descriptions/static/preproc_prunevarsubmean.txt
| A	examples/descriptions/static/preproc_sortwordstring.txt
|  
* commit cf05d1747a4cbdf4f0f85ca9a7e7185f5c1f7307
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Mar 1 10:44:59 2010 +0000
| 
|     + added descriptions to some of the examples
| 
| A	examples/descriptions/static/clustering_kmeans.txt
| A	examples/descriptions/static/distribution_hmm.txt
| A	examples/descriptions/static/distribution_linear_hmm.txt
| A	examples/descriptions/static/regression_krr.txt
| A	examples/descriptions/static/regression_libsvr.txt
| A	examples/descriptions/static/regression_svrlight.txt
|  
* commit 99a42d67ea20c4a09367f08f93ffccf2c92d4952
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 1 10:22:30 2010 +0000
| 
|     forget about python when it is not properly installed
| 
| M	src/configure
|  
* commit 9c74d2ae9382770f1f4b4700fdd9d92c76c3286b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 1 10:15:03 2010 +0000
| 
|     proper python2.4 detection...
| 
| M	src/configure
|  
* commit 01da4cdeb2e121f05b694176a020ae509fb4e4d1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 1 09:36:44 2010 +0000
| 
|     really disable all syntax highlighting, even for error messages
| 
| M	src/libshogun/lib/io.cpp
| M	src/libshogun/lib/io.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit 55dc21b1990b2670e892179ab54323ad49bee13f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 1 09:11:53 2010 +0000
| 
|     don't enable python-static when python is not available
| 
| M	src/configure
|  
* commit b2bbc9217343bb69c6ff747ee2436535578bd1ce
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 1 09:07:08 2010 +0000
| 
|     fix liblinear examples to work with new code
| 
| M	examples/undocumented/matlab_and_octave/classifier_liblinear.m
| M	examples/undocumented/matlab_and_octave/classifier_liblinear_objective.m
|  
* commit 42cb10552280aeb69324729db5da7b3bc47335a8
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Sat Feb 27 22:30:17 2010 +0000
| 
|     added new descriptions
| 
| M	examples/descriptions/static/classifier_mpdsvm.txt
| M	examples/descriptions/static/classifier_subgradientsvm.txt
| A	examples/descriptions/static/classifier_svmlight.txt
| A	examples/descriptions/static/classifier_svmlight_wdkernel.txt
| A	examples/descriptions/static/classifier_svmlight_wds_batch.txt
| A	examples/descriptions/static/classifier_svmlin.txt
| A	examples/descriptions/static/classifier_svmocas.txt
| A	examples/descriptions/static/classifier_svmocas_objective.txt
| A	examples/descriptions/static/classifier_svmsgd.txt
| A	examples/descriptions/static/classifier_svmsgd_objective.txt
|  
* commit 30700332452dc55b30cbe498942d445f4c8cae63
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Fri Feb 26 15:55:58 2010 +0000
| 
|     new documentation added
| 
| A	examples/descriptions/static/classifier_subgradientsvm.txt
|  
* commit bc8662febb45f6686e8d5501c75d5c6035354572
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Fri Feb 26 15:29:55 2010 +0000
| 
|     new descprions added
| 
| A	examples/descriptions/static/classifier_mpdsvm.txt
| A	examples/descriptions/static/classifier_perceptron.txt
|  
* commit dad45f031e50a2d1ac5b9cb02912177deacda5cd
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Fri Feb 26 14:19:05 2010 +0000
| 
|     two new descriptions added
| 
| A	examples/descriptions/static/classifier_libsvmmulticlass.txt
| A	examples/descriptions/static/classifier_libsvmoneclass.txt
|  
* commit bd12ba77ffba99fd54d054bc3206dd063cc9177e
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Fri Feb 26 13:51:12 2010 +0000
| 
|     Added description of gpdt, gmnp and knn. Plus changes in libsvm.
| 
| A	examples/descriptions/static/classifier_gmnpsvm.txt
| A	examples/descriptions/static/classifier_gpbtsvm.txt
| A	examples/descriptions/static/classifier_knn.txt
| M	examples/descriptions/static/classifier_libsvm.txt
|  
* commit 3efbb3c29c73e8a70ad19e72978ea0f48005ce85
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Fri Feb 26 12:10:30 2010 +0000
| 
| A	examples/descriptions/static/distance_minkowski.txt
|  
* commit a7d1d92b53611906b2a25d40bb045bffec43e953
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Fri Feb 26 12:04:50 2010 +0000
| 
|     added examples 'REAL' distances
| 
| M	examples/descriptions/static/distance_braycurtis.txt
| A	examples/descriptions/static/distance_canberra.txt
| A	examples/descriptions/static/distance_chebyshew.txt
| A	examples/descriptions/static/distance_chisquare.txt
| A	examples/descriptions/static/distance_cosine.txt
| A	examples/descriptions/static/distance_euclidian.txt
| A	examples/descriptions/static/distance_geodesic.txt
| A	examples/descriptions/static/distance_jensen.txt
| A	examples/descriptions/static/distance_manhatten.txt
| A	examples/descriptions/static/distance_tanimoto.txt
|  
* commit 79da396f7eca8cc60d4bc4c34af21c6cd3cc83ee
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 26 11:53:36 2010 +0000
| 
|     - disable line prefixes (that were on by default)
|     - mention how syntax highlighting can be disabled (for poor matlab gui users ;)
| 
| M	src/libshogun/lib/io.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit a01978c73d3f9957aab02e9b9debf11013639080
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Fri Feb 26 10:45:38 2010 +0000
| 
|     added example bray curtis distance
| 
| A	examples/descriptions/static/distance_braycurtis.txt
|  
* commit 88c9feb5b9ab52d8fd954d2d9d2d529cd64e2e07
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 26 10:29:41 2010 +0000
| 
|     fix reference counting for linear hmms/distributions set/get_features
| 
| M	src/libshogun/distributions/Distribution.h
| M	src/libshogun/distributions/LinearHMM.cpp
|  
* commit 4dc568e96ca6349132400a0d164e4958b6e5120e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 26 05:27:17 2010 +0000
| 
|     hopefully fix access of feature vectors in matrices >2GB (but still with no more than 2^31 features/ 2^31 examples)
| 
| M	src/libshogun/features/SimpleFeatures.h
|  
* commit e0d9a54ed6881f5580e264ce2c5a5b3964612a9b
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Feb 25 17:36:59 2010 +0000
| 
|     renamed set_C(c1, c2) to set_C(c_neg, c_pos) to make it self-explanatory
| 
| M	src/libshogun/classifier/LPBoost.h
| M	src/libshogun/classifier/LPM.h
| M	src/libshogun/classifier/SubGradientLPM.h
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/SVM.h
| M	src/libshogun/classifier/svm/SVMLin.h
| M	src/libshogun/classifier/svm/SVMOcas.h
| M	src/libshogun/classifier/svm/SVMSGD.h
| M	src/libshogun/classifier/svm/SubGradientSVM.h
| M	src/libshogun/classifier/svm/WDSVMOcas.h
|  
* commit 268a7e54f5b1f0844568190277302d73f940ec11
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 25 13:57:01 2010 +0000
| 
|     avoid bias messing around when bias is disabled and return 0 immediately
| 
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
|  
* commit 2cfecc1186059b93c4d8a63a09263e28f9ccb607
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 25 13:25:40 2010 +0000
| 
|     add support for disabling bias for libsvm - thanks Chih-Jen Lin for the code
| 
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
|  
* commit 5d40334a5382d8a8732fd9d7e168e6ee1150c042
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 25 12:57:08 2010 +0000
| 
|     fix a bug when returned matrices are >4GB
| 
| M	src/libshogun/features/SimpleFeatures.h
|  
* commit 216178c6b16cd09190f17909966d3a349717a9af
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 25 09:14:26 2010 +0000
| 
|     minor cleanup
| 
| M	src/libshogun/classifier/svm/LibSVM.cpp
|  
* commit ab0dbf62a78e13549f0cdd579414fce48562dbc9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 25 09:14:19 2010 +0000
| 
|     fix crasher in out of memory condigiton
| 
| M	src/libshogun/features/SimpleFeatures.h
|  
* commit 85913c206c0e2e6ef09cd9609ae376da87c6abf4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 24 18:06:30 2010 +0000
| 
|     add scatter kernel normalizer for scattersvm
| 
| A	src/libshogun/kernel/ScatterKernelNormalizer.h
| M	src/modular/Kernel.i
|  
* commit 875b49a70f13a8c93f81097ce3f71db5fd4c4efd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 24 09:08:16 2010 +0000
| 
|     support setting of maximum number of iterations for liblinear and include time limit
| 
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/classifier/svm/Tron.cpp
| M	src/libshogun/classifier/svm/Tron.h
|  
* commit 81eb18c1b8e9dbc91e17050ce2877a8bd0d3e522
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Feb 23 15:07:01 2010 +0000
| 
|     -- more kernel descriptions
| 
| A	examples/descriptions/static/kernels_chi2.txt
| A	examples/descriptions/static/kernels_combined.txt
| A	examples/descriptions/static/kernels_commulongstring.txt
|  
* commit aa9ca398af734f416625cd5f3768ec2c049c0a2d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 23 15:04:39 2010 +0000
| 
|     add function to fetch multiclass type
| 
| M	src/libshogun/classifier/svm/MultiClassSVM.h
|  
* commit 4c0ad368a274d31402b4086aaf8cce18299f7d4a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 23 11:29:05 2010 +0000
| 
|     no longer assign labels to sub-svms
| 
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
|  
* commit 465292abf53b738bda83ea8feaa87d134cfe8a41
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 22 21:00:27 2010 +0000
| 
|     add an option to set custom weights / normalization const in wd features
| 
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/WDFeatures.cpp
| M	src/libshogun/features/WDFeatures.h
| M	src/modular/Features.i
|  
* commit 4ec6aa83f5d82adbcd4526269cbcca5fd94decaa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 22 13:13:26 2010 +0000
| 
|     add todo snippet for liblinear multiclass
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
|  
* commit 265c699e73a931e1c8c34afd3bf0d6589ccfe3ad
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 22 11:47:39 2010 +0000
| 
|     fix bias handling in liblinear L1_*, turn on file/error nr for error msg's
| 
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/lib/io.cpp
|  
* commit 19994cf1450d4f221e28925dfcd2e6a333b3917e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 22 09:16:42 2010 +0000
| 
|     add set/get io object functions and update news
| 
| M	src/NEWS
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/base/init.cpp
| M	src/libshogun/base/init.h
| M	src/libshogun/classifier/svm/LibLinear.cpp
|  
* commit 79649700a37a6352fbe8400e481c43c4cccfdc49
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 19 22:18:14 2010 +0000
| 
|     - fix multitaskkernelnormalizer inclusion order
|     - add function to simplefeatures to obtain fm directly from dotfeatures
| 
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/kernel/MultitaskKernelMklNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelTreeNormalizer.h
| M	src/modular/Kernel.i
|  
* commit 4a69bab888a7e502cd720f44d605573a8abcd83d
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Feb 19 18:03:09 2010 +0000
| 
|     fixed multiple friend
| 
| M	src/libshogun/kernel/Kernel.h
|  
* commit d61315e292f0b18daef43c3b61a8e64a915b2a94
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Feb 19 18:00:22 2010 +0000
| 
|     updated interfaces for MT kernels
| 
| M	src/modular/Kernel.i
| M	src/modular/SGBase.i
|  
* commit 9eec6463a01a0da5ce6001840aa73111390cedc2
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Feb 19 17:59:00 2010 +0000
| 
|     included some stl containers
| 
| M	src/libshogun/base/SGObject.h
|  
* commit 91bdeb6782823cc707b660b3d1da07dae3d25f56
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Feb 19 17:58:23 2010 +0000
| 
|     further work on MT kernels
| 
| A	src/libshogun/kernel/MultitaskKernelMklNormalizer.h
| A	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelTreeNormalizer.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
|  
* commit c8408fd1610df0fe089a6bf6067aa87402aad612
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Feb 19 17:57:10 2010 +0000
| 
|     added MT normalizers as friends
| 
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
|  
* commit a86b2a36794c9f6c02c62d820b5f4fdf45ba0954
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Feb 19 17:55:59 2010 +0000
| 
|     added kernel_normalizer type enum
| 
| M	src/libshogun/kernel/KernelNormalizer.h
|  
* commit f01f28b118ebd6ffc57f51a78ec0e4af63f7535a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 19 15:52:37 2010 +0000
| 
|     remove transposed wd features
| 
| D	src/libshogun/features/TransposedWDFeatures.cpp
| D	src/libshogun/features/TransposedWDFeatures.h
| M	src/modular/Features.i
|  
* commit e1fffb2afe5cfcf1b1e6d371725927c48db9130e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 19 15:51:47 2010 +0000
| 
|     add transposed wd features
| 
| A	src/libshogun/features/TransposedWDFeatures.cpp
| A	src/libshogun/features/TransposedWDFeatures.h
| M	src/libshogun/features/WDFeatures.cpp
| M	src/modular/Features.i
|  
* commit b9158c3359ee5f9f83f20061a7d2782b49fa30b8
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Feb 19 13:06:28 2010 +0000
| 
|     -- two more descriptions
| 
| A	examples/descriptions/static/kernels_polymatchstring.txt
| A	examples/descriptions/static/kernels_polymatchword.txt
|  
* commit f7f986532cf866a3accfc5bb4954fd6d1e33a6f4
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Feb 19 13:06:17 2010 +0000
| 
|     -- new example description + some additional debug code
| 
| A	examples/descriptions/static/kernels_poly.txt
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/Plif.cpp
|  
* commit a9deb728cd1ab5175700f98f55388ef3bd6648dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 19 10:47:24 2010 +0000
| 
|     set max train time for libsvr
| 
| M	src/libshogun/regression/svr/LibSVR.cpp
|  
* commit 40123cc6393d3032d69623a303029ca46bab4d3b
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Feb 18 15:29:23 2010 +0000
| 
|     added mask normalizer and improved tree normalizer
| 
| A	src/libshogun/kernel/MultitaskKernelMaskNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelTreeNormalizer.h
|  
* commit b76d0441acf5119d35221fe8e8c533aa02e3eb8e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 16 16:34:44 2010 +0000
| 
|     fix string feature transpose function
| 
| M	src/libshogun/features/StringFeatures.h
|  
* commit da393023d905ed2a787c29d11db4b0f760ff133b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 16 12:38:12 2010 +0000
| 
|     fix get_transposed() in string features
| 
| M	src/libshogun/features/StringFeatures.h
|  
* commit 4f20ff7b0837b37bd548dc4e01a3882fcf9ccb29
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 16 12:28:49 2010 +0000
| 
|     implement feature iterator for wd and spectrum kernel features
| 
| M	src/configure
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/WDFeatures.cpp
| M	src/libshogun/features/WDFeatures.h
|  
* commit d28b98165985e7f38593452aed5dc387d3652fd0
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Feb 16 11:28:07 2010 +0000
| 
|     -- modified description
| 
| M	examples/descriptions/static/kernels_oligostring.txt
|  
* commit a78533901f4cae2d371b8ca10fd01f8b28dda5a6
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Feb 16 11:27:54 2010 +0000
| 
|     -- more kernel descriptions
| 
| M	examples/descriptions/static/kernels_linearstring.txt
| A	examples/descriptions/static/kernels_localalignmentstring.txt
| A	examples/descriptions/static/kernels_localityimprovedstring.txt
| A	examples/descriptions/static/kernels_oligostring.txt
|  
* commit bad213847669c75ef69cc3eafb9d422f3c5bbc68
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 16 09:40:22 2010 +0000
| 
|     integreate sparse feature iterator in combined dot features
| 
| M	src/Makefile
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/features/CombinedDotFeatures.cpp
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/WDFeatures.h
|  
* commit d7f7f58a191f57a4d1f12556695509f7582811f3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 16 05:55:16 2010 +0000
| 
|     L1 based liblinear methods work now
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
|  
* commit b7a3f236a3a4741689b028b6fd9b293cc7795fc2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 15 21:14:27 2010 +0000
| 
|     fix transpose functions
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
|  
* commit a6da66cab72a91e15402345f8bd954515748eaa9
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Mon Feb 15 18:13:59 2010 +0000
| 
|     -- some more descriptions
| 
| A	examples/descriptions/static/kernels_linearbyte.txt
| A	examples/descriptions/static/kernels_linearword.txt
|  
* commit 2432e5738b2fab28244e51faa9c75311261a0697
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Mon Feb 15 18:13:50 2010 +0000
| 
|     -- started documenting kernel examples
| 
| A	examples/descriptions/static/kernels_linear.txt
| A	examples/descriptions/static/kernels_linearstring.txt
|  
* commit e1ce44686849d3fe4b1f0d99869577a428024fec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 15 18:03:56 2010 +0000
| 
|     modify L1 parts of liblinear to use new interface
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/modular/Features.i
|  
* commit a0831df7be6d8e0f9b99fecf3c64c23fe9580233
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 15 16:31:13 2010 +0000
| 
|     add an iterator to enable traversing non-zero components of (sparse) feature vectors
| 
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/ExplicitSpecFeatures.h
| M	src/libshogun/features/FKFeatures.cpp
| M	src/libshogun/features/HashedWDFeatures.h
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/PolyFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/SparsePolyFeatures.h
| M	src/libshogun/features/WDFeatures.h
|  
* commit c778e9374b99ddc9f6a2205b72059ba3da63fffb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 12 15:52:30 2010 +0000
| 
|     add example on how documentation could look like for libsvm
| 
| A	examples/descriptions/static/classifier_libsvm.txt
|  
* commit 4f789aad23fe02feec4a19acacaacfc1f763743e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 12 12:16:52 2010 +0000
| 
|     fix makefile to install examples
| 
| M	src/Makefile
| M	src/Makefile.template
|  
* commit bb34d53758b1a6c056002f616a60816b5bee501f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 12 12:15:44 2010 +0000
| 
|     polished example documentation script
| 
| M	examples/generate_documented.sh
|  
* commit ae06dd9ccaabedc2194004255a43f90234155716
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 12 11:20:12 2010 +0000
| 
|     re-add accidentally deleted examples
| 
| A	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/README
| A	examples/undocumented/libshogun/basic_minimal.cpp
| A	examples/undocumented/libshogun/classifier_libsvm.cpp
| A	examples/undocumented/libshogun/classifier_minimal_svm.cpp
| A	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| A	examples/undocumented/libshogun/kernel_gaussian.cpp
| A	examples/undocumented/libshogun/kernel_revlin.cpp
| A	examples/undocumented/libshogun/library_dyn_int.cpp
| A	examples/undocumented/libshogun/library_gc_array.cpp
| A	examples/undocumented/libshogun/library_hash.cpp
| A	examples/undocumented/libshogun/library_indirect_object.cpp
| A	examples/undocumented/matlab_and_octave/check.sh
| A	examples/undocumented/matlab_and_octave/classifier_gmnpsvm.m
| A	examples/undocumented/matlab_and_octave/classifier_gpbtsvm.m
| A	examples/undocumented/matlab_and_octave/classifier_knn.m
| A	examples/undocumented/matlab_and_octave/classifier_lda.m
| A	examples/undocumented/matlab_and_octave/classifier_liblinear.m
| A	examples/undocumented/matlab_and_octave/classifier_liblinear_objective.m
| A	examples/undocumented/matlab_and_octave/classifier_libsvm.m
| A	examples/undocumented/matlab_and_octave/classifier_libsvmmulticlass.m
| A	examples/undocumented/matlab_and_octave/classifier_libsvmoneclass.m
| A	examples/undocumented/matlab_and_octave/classifier_lpboost.m
| A	examples/undocumented/matlab_and_octave/classifier_lpm.m
| A	examples/undocumented/matlab_and_octave/classifier_mpdsvm.m
| A	examples/undocumented/matlab_and_octave/classifier_perceptron.m
| A	examples/undocumented/matlab_and_octave/classifier_subgradientsvm.m
| A	examples/undocumented/matlab_and_octave/classifier_svmlight.m
| A	examples/undocumented/matlab_and_octave/classifier_svmlight_wdkernel.m
| A	examples/undocumented/matlab_and_octave/classifier_svmlight_wds_batch.m
| A	examples/undocumented/matlab_and_octave/classifier_svmlin.m
| A	examples/undocumented/matlab_and_octave/classifier_svmocas.m
| A	examples/undocumented/matlab_and_octave/classifier_svmocas_objective.m
| A	examples/undocumented/matlab_and_octave/classifier_svmsgd.m
| A	examples/undocumented/matlab_and_octave/classifier_svmsgd_objective.m
| A	examples/undocumented/matlab_and_octave/clustering_hierarchical.m
| A	examples/undocumented/matlab_and_octave/clustering_kmeans.m
| A	examples/undocumented/matlab_and_octave/distance_braycurtis.m
| A	examples/undocumented/matlab_and_octave/distance_canberra.m
| A	examples/undocumented/matlab_and_octave/distance_canberraword.m
| A	examples/undocumented/matlab_and_octave/distance_chebyshew.m
| A	examples/undocumented/matlab_and_octave/distance_chisquare.m
| A	examples/undocumented/matlab_and_octave/distance_cosine.m
| A	examples/undocumented/matlab_and_octave/distance_euclidian.m
| A	examples/undocumented/matlab_and_octave/distance_geodesic.m
| A	examples/undocumented/matlab_and_octave/distance_hammingword.m
| A	examples/undocumented/matlab_and_octave/distance_jensen.m
| A	examples/undocumented/matlab_and_octave/distance_manhatten.m
| A	examples/undocumented/matlab_and_octave/distance_manhattenword.m
| A	examples/undocumented/matlab_and_octave/distance_minkowski.m
| A	examples/undocumented/matlab_and_octave/distance_tanimoto.m
| A	examples/undocumented/matlab_and_octave/distribution_histogram.m
| A	examples/undocumented/matlab_and_octave/distribution_hmm.m
| A	examples/undocumented/matlab_and_octave/distribution_linearhmm.m
| A	examples/undocumented/matlab_and_octave/distribution_markovchain.m
| A	examples/undocumented/matlab_and_octave/features_dot_polynomial.m
| A	examples/undocumented/matlab_and_octave/features_dot_wdfeatures.m
| A	examples/undocumented/matlab_and_octave/features_dot_weightedspec.m
| A	examples/undocumented/matlab_and_octave/features_string.m
| A	examples/undocumented/matlab_and_octave/graphical/cluster_hierarchical.m
| A	examples/undocumented/matlab_and_octave/graphical/cluster_kmeans.m
| A	examples/undocumented/matlab_and_octave/graphical/entropy.m
| A	examples/undocumented/matlab_and_octave/graphical/hmm.m
| A	examples/undocumented/matlab_and_octave/graphical/lda_classification.m
| A	examples/undocumented/matlab_and_octave/graphical/local_alignment_kernel.m
| A	examples/undocumented/matlab_and_octave/graphical/mkl_pseudo_dna.m
| A	examples/undocumented/matlab_and_octave/graphical/spec_interp.m
| A	examples/undocumented/matlab_and_octave/graphical/svm_classification.m
| A	examples/undocumented/matlab_and_octave/graphical/svm_multiclass.m
| A	examples/undocumented/matlab_and_octave/graphical/svr_regression.m
| A	examples/undocumented/matlab_and_octave/graphical/test_gnpp_svm.m
| A	examples/undocumented/matlab_and_octave/graphical/test_poim_wds.m
| A	examples/undocumented/matlab_and_octave/graphical/test_regression.m
| A	examples/undocumented/matlab_and_octave/graphical/test_regression_mkl.m
| A	examples/undocumented/matlab_and_octave/graphical/test_spec_interp.m
| A	examples/undocumented/matlab_and_octave/graphical/test_svm_multiclass.m
| A	examples/undocumented/matlab_and_octave/graphical/test_wd_wds_parallel.m
| A	examples/undocumented/matlab_and_octave/graphical/wds_consensus.m
| A	examples/undocumented/matlab_and_octave/graphical/wds_shift_interp.m
| A	examples/undocumented/matlab_and_octave/kernels_chi2.m
| A	examples/undocumented/matlab_and_octave/kernels_combined.m
| A	examples/undocumented/matlab_and_octave/kernels_commulongstring.m
| A	examples/undocumented/matlab_and_octave/kernels_commwordstring.m
| A	examples/undocumented/matlab_and_octave/kernels_const.m
| A	examples/undocumented/matlab_and_octave/kernels_custom.m
| A	examples/undocumented/matlab_and_octave/kernels_diag.m
| A	examples/undocumented/matlab_and_octave/kernels_distance.m
| A	examples/undocumented/matlab_and_octave/kernels_fixeddegreestring.m
| A	examples/undocumented/matlab_and_octave/kernels_gaussian.m
| A	examples/undocumented/matlab_and_octave/kernels_gaussianshift.m
| A	examples/undocumented/matlab_and_octave/kernels_histogramword.m
| A	examples/undocumented/matlab_and_octave/kernels_lik.m
| A	examples/undocumented/matlab_and_octave/kernels_linear.m
| A	examples/undocumented/matlab_and_octave/kernels_linearbyte.m
| A	examples/undocumented/matlab_and_octave/kernels_linearstring.m
| A	examples/undocumented/matlab_and_octave/kernels_linearword.m
| A	examples/undocumented/matlab_and_octave/kernels_localalignmentstring.m
| A	examples/undocumented/matlab_and_octave/kernels_localityimprovedstring.m
| A	examples/undocumented/matlab_and_octave/kernels_oligostring.m
| A	examples/undocumented/matlab_and_octave/kernels_poly.m
| A	examples/undocumented/matlab_and_octave/kernels_polymatchstring.m
| A	examples/undocumented/matlab_and_octave/kernels_polymatchword.m
| A	examples/undocumented/matlab_and_octave/kernels_sigmoid.m
| A	examples/undocumented/matlab_and_octave/kernels_simplelocalityimprovedstring.m
| A	examples/undocumented/matlab_and_octave/kernels_sparsegaussian.m
| A	examples/undocumented/matlab_and_octave/kernels_sparselinear.m
| A	examples/undocumented/matlab_and_octave/kernels_sparsepoly.m
| A	examples/undocumented/matlab_and_octave/kernels_spectrum.m
| A	examples/undocumented/matlab_and_octave/kernels_weighted_spec.m
| A	examples/undocumented/matlab_and_octave/kernels_weightedcommwordstring.m
| A	examples/undocumented/matlab_and_octave/kernels_weighteddegreepositionstring.m
| A	examples/undocumented/matlab_and_octave/kernels_weighteddegreestring.m
| A	examples/undocumented/matlab_and_octave/mkl_classify_christmas_star.m
| A	examples/undocumented/matlab_and_octave/mkl_multiclass.m
| A	examples/undocumented/matlab_and_octave/mkl_regression_3sine_waves.m
| A	examples/undocumented/matlab_and_octave/mkl_regression_sine.m
| A	examples/undocumented/matlab_and_octave/preproc_logplusone.m
| A	examples/undocumented/matlab_and_octave/preproc_normone.m
| A	examples/undocumented/matlab_and_octave/preproc_prunevarsubmean.m
| A	examples/undocumented/matlab_and_octave/preproc_sortulongstring.m
| A	examples/undocumented/matlab_and_octave/preproc_sortwordstring.m
| A	examples/undocumented/matlab_and_octave/regression_krr.m
| A	examples/undocumented/matlab_and_octave/regression_libsvr.m
| A	examples/undocumented/matlab_and_octave/regression_svrlight.m
| A	examples/undocumented/matlab_and_octave/structure_dynprog.m
| A	examples/undocumented/matlab_and_octave/tests/test_classifier.m
| A	examples/undocumented/matlab_and_octave/tests/test_combined.m
| A	examples/undocumented/matlab_and_octave/tests/test_combined2.m
| A	examples/undocumented/matlab_and_octave/tests/test_complex_scenario.m
| A	examples/undocumented/matlab_and_octave/tests/test_custom_kernel.m
| A	examples/undocumented/matlab_and_octave/tests/test_interface.m
| A	examples/undocumented/matlab_and_octave/tests/test_kernel_optimization.m
| A	examples/undocumented/matlab_and_octave/tests/test_knn.m
| A	examples/undocumented/matlab_and_octave/tests/test_l2svm.m
| A	examples/undocumented/matlab_and_octave/tests/test_linadd.m
| A	examples/undocumented/matlab_and_octave/tests/test_linear_methods.m
| A	examples/undocumented/matlab_and_octave/tests/test_mkl.m
| A	examples/undocumented/matlab_and_octave/tests/test_mkl_svr.m
| A	examples/undocumented/matlab_and_octave/tests/test_mkl_svr_wrapper.m
| A	examples/undocumented/matlab_and_octave/tests/test_ocas_normalization.m
| A	examples/undocumented/matlab_and_octave/tests/test_one_class_svm.m
| A	examples/undocumented/matlab_and_octave/tests/test_regression_linadd.m
| A	examples/undocumented/matlab_and_octave/tests/test_sliding_window.m
| A	examples/undocumented/matlab_and_octave/tests/test_sparse.m
| A	examples/undocumented/matlab_and_octave/tests/test_sparse_methods.m
| A	examples/undocumented/matlab_and_octave/tests/test_spec_consensus.m
| A	examples/undocumented/matlab_and_octave/tests/test_subgradsvm.m
| A	examples/undocumented/matlab_and_octave/tests/test_svmlight_libsvm.m
| A	examples/undocumented/matlab_and_octave/tests/test_svrlight_libsvr.m
| A	examples/undocumented/matlab_and_octave/tests/test_tppk.m
| A	examples/undocumented/matlab_and_octave/tests/test_wd_kernel.m
| A	examples/undocumented/matlab_and_octave/tests/test_wd_linadd.m
| A	examples/undocumented/matlab_and_octave/tests/test_wdocas.m
| A	examples/undocumented/matlab_and_octave/tests/test_wds_consensus.m
| A	examples/undocumented/matlab_and_octave/tests/test_wds_kernel.m
| A	examples/undocumented/matlab_and_octave/tests/test_wdshift_position_weights.m
| A	examples/undocumented/matlab_and_octave/tests/test_weighted_spectrum.m
| A	examples/undocumented/matlab_and_octave/tools/PCACut.m
| A	examples/undocumented/matlab_and_octave/tools/README
| A	examples/undocumented/matlab_and_octave/tools/calcroc.m
| A	examples/undocumented/matlab_and_octave/tools/calcrocscore.m
| A	examples/undocumented/matlab_and_octave/tools/graph_hmm.m
| A	examples/undocumented/matlab_and_octave/tools/graph_hmm2.m
| A	examples/undocumented/matlab_and_octave/tools/load_matrix.m
| A	examples/undocumented/matlab_and_octave/tools/model_to_graph.m
| A	examples/undocumented/matlab_and_octave/tools/plotroc.m
| A	examples/undocumented/matlab_and_octave/tools/read_feature_matrix.m
| A	examples/undocumented/matlab_and_octave/tools/readroc.m
| A	examples/undocumented/matlab_and_octave/tools/save_as_ascii.m
| A	examples/undocumented/matlab_and_octave/tools/save_as_double.m
| A	examples/undocumented/python_modular/check.sh
| A	examples/undocumented/python_modular/classifier_custom_kernel_modular.py
| A	examples/undocumented/python_modular/classifier_domainadaptationsvm_modular.py
| A	examples/undocumented/python_modular/classifier_gmnpsvm_modular.py
| A	examples/undocumented/python_modular/classifier_gpbtsvm_modular.py
| A	examples/undocumented/python_modular/classifier_knn_modular.py
| A	examples/undocumented/python_modular/classifier_larank_modular.py
| A	examples/undocumented/python_modular/classifier_lda_modular.py
| A	examples/undocumented/python_modular/classifier_liblinear_modular.py
| A	examples/undocumented/python_modular/classifier_libsvm_minimal_modular.py
| A	examples/undocumented/python_modular/classifier_libsvm_modular.py
| A	examples/undocumented/python_modular/classifier_libsvmmulticlass_modular.py
| A	examples/undocumented/python_modular/classifier_libsvmoneclass_modular.py
| A	examples/undocumented/python_modular/classifier_mpdsvm_modular.py
| A	examples/undocumented/python_modular/classifier_perceptron_modular.py
| A	examples/undocumented/python_modular/classifier_subgradientsvm_modular.py
| A	examples/undocumented/python_modular/classifier_svmlight_batch_linadd_modular.py
| A	examples/undocumented/python_modular/classifier_svmlight_linear_term_modular.py
| A	examples/undocumented/python_modular/classifier_svmlight_modular.py
| A	examples/undocumented/python_modular/classifier_svmlin_modular.py
| A	examples/undocumented/python_modular/classifier_svmocas_modular.py
| A	examples/undocumented/python_modular/classifier_svmsgd_modular.py
| A	examples/undocumented/python_modular/clustering_hierarchical_modular.py
| A	examples/undocumented/python_modular/clustering_kmeans_modular.py
| A	examples/undocumented/python_modular/distance_braycurtis_modular.py
| A	examples/undocumented/python_modular/distance_canberra_modular.py
| A	examples/undocumented/python_modular/distance_canberraword_modular.py
| A	examples/undocumented/python_modular/distance_chebyshew_modular.py
| A	examples/undocumented/python_modular/distance_chisquare_modular.py
| A	examples/undocumented/python_modular/distance_cosine_modular.py
| A	examples/undocumented/python_modular/distance_euclidian_modular.py
| A	examples/undocumented/python_modular/distance_geodesic_modular.py
| A	examples/undocumented/python_modular/distance_hammingword_modular.py
| A	examples/undocumented/python_modular/distance_jensen_modular.py
| A	examples/undocumented/python_modular/distance_manhatten_modular.py
| A	examples/undocumented/python_modular/distance_manhattenword_modular.py
| A	examples/undocumented/python_modular/distance_minkowski_modular.py
| A	examples/undocumented/python_modular/distance_normsquared_modular.py
| A	examples/undocumented/python_modular/distance_sparseeuclidean_modular.py
| A	examples/undocumented/python_modular/distance_tanimoto_modular.py
| A	examples/undocumented/python_modular/distribution_histogram_modular.py
| A	examples/undocumented/python_modular/distribution_hmm_modular.py
| A	examples/undocumented/python_modular/distribution_linear_hmm_modular.py
| A	examples/undocumented/python_modular/features_read_svmlight_format_modular.py
| A	examples/undocumented/python_modular/features_simple_byte_modular.py
| A	examples/undocumented/python_modular/features_simple_longint_modular.py
| A	examples/undocumented/python_modular/features_simple_modular.py
| A	examples/undocumented/python_modular/features_simple_real_modular.py
| A	examples/undocumented/python_modular/features_sparse_modular.py
| A	examples/undocumented/python_modular/features_string_char_compressed_modular.py
| A	examples/undocumented/python_modular/features_string_char_modular.py
| A	examples/undocumented/python_modular/features_string_file_char_modular.py
| A	examples/undocumented/python_modular/features_string_file_modular.py
| A	examples/undocumented/python_modular/features_string_sliding_window_modular.py
| A	examples/undocumented/python_modular/features_string_ulong_modular.py
| A	examples/undocumented/python_modular/features_string_word_modular.py
| A	examples/undocumented/python_modular/graphical/all_evaluation.py
| A	examples/undocumented/python_modular/graphical/krr.py
| A	examples/undocumented/python_modular/graphical/krr_sinc.py
| A	examples/undocumented/python_modular/graphical/lda.py
| A	examples/undocumented/python_modular/graphical/multiple_smvs.py
| A	examples/undocumented/python_modular/graphical/svm.py
| A	examples/undocumented/python_modular/graphical/svmlin.py
| A	examples/undocumented/python_modular/graphical/svr_sinc.py
| A	examples/undocumented/python_modular/graphical/util.py
| A	examples/undocumented/python_modular/hashed_wd_features_modular.py
| A	examples/undocumented/python_modular/kernel_auc_modular.py
| A	examples/undocumented/python_modular/kernel_chi2_modular.py
| A	examples/undocumented/python_modular/kernel_combined_custom_poly_modular.py
| A	examples/undocumented/python_modular/kernel_combined_modular.py
| A	examples/undocumented/python_modular/kernel_comm_ulong_string_modular.py
| A	examples/undocumented/python_modular/kernel_comm_word_string_modular.py
| A	examples/undocumented/python_modular/kernel_const_modular.py
| A	examples/undocumented/python_modular/kernel_custom_modular.py
| A	examples/undocumented/python_modular/kernel_diag_modular.py
| A	examples/undocumented/python_modular/kernel_distance_modular.py
| A	examples/undocumented/python_modular/kernel_fisher_modular.py
| A	examples/undocumented/python_modular/kernel_fixed_degree_string_modular.py
| A	examples/undocumented/python_modular/kernel_gaussian_modular.py
| A	examples/undocumented/python_modular/kernel_gaussian_shift_modular.py
| A	examples/undocumented/python_modular/kernel_histogram_word_string_modular.py
| A	examples/undocumented/python_modular/kernel_linear_byte_modular.py
| A	examples/undocumented/python_modular/kernel_linear_modular.py
| A	examples/undocumented/python_modular/kernel_linear_string_modular.py
| A	examples/undocumented/python_modular/kernel_linear_word_modular.py
| A	examples/undocumented/python_modular/kernel_local_alignment_string_modular.py
| A	examples/undocumented/python_modular/kernel_locality_improved_string_modular.py
| A	examples/undocumented/python_modular/kernel_match_word_string_modular.py
| A	examples/undocumented/python_modular/kernel_oligo_string_modular.py
| A	examples/undocumented/python_modular/kernel_poly_match_string_modular.py
| A	examples/undocumented/python_modular/kernel_poly_match_word_string_modular.py
| A	examples/undocumented/python_modular/kernel_poly_modular.py
| A	examples/undocumented/python_modular/kernel_salzberg_word_string_modular.py
| A	examples/undocumented/python_modular/kernel_sigmoid_modular.py
| A	examples/undocumented/python_modular/kernel_simple_locality_improved_string_modular.py
| A	examples/undocumented/python_modular/kernel_sparse_gaussian_modular.py
| A	examples/undocumented/python_modular/kernel_sparse_linear_modular.py
| A	examples/undocumented/python_modular/kernel_sparse_poly_modular.py
| A	examples/undocumented/python_modular/kernel_top_modular.py
| A	examples/undocumented/python_modular/kernel_weighted_comm_word_string_modular.py
| A	examples/undocumented/python_modular/kernel_weighted_degree_position_string_modular.py
| A	examples/undocumented/python_modular/kernel_weighted_degree_string_modular.py
| A	examples/undocumented/python_modular/mkl_binclass_modular.py
| A	examples/undocumented/python_modular/mkl_multiclass_modular.py
| A	examples/undocumented/python_modular/preproc_logplusone_modular.py
| A	examples/undocumented/python_modular/preproc_normone_modular.py
| A	examples/undocumented/python_modular/preproc_prunevarsubmean_modular.py
| A	examples/undocumented/python_modular/preproc_sortulongstring_modular.py
| A	examples/undocumented/python_modular/preproc_sortwordstring_modular.py
| A	examples/undocumented/python_modular/regression_krr_modular.py
| A	examples/undocumented/python_modular/regression_libsvr_modular.py
| A	examples/undocumented/python_modular/regression_svrlight_modular.py
| A	examples/undocumented/python_modular/serialization_svmlight_modular.py
| A	examples/undocumented/python_modular/structure_dynprog_modular.py
| A	examples/undocumented/python_modular/tests_check_commwordkernel_memleak_modular.py
| A	examples/undocumented/python_modular/tools/__init__.py
| A	examples/undocumented/python_modular/tools/load.py
|  
* commit 2af0eb2be648de013d29bbea8043f814f4f1c6bc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 12 11:14:58 2010 +0000
| 
|     fix doc gen
| 
| M	examples/Makefile
| M	examples/generate_documented.sh
|  
* commit c85966c51cc464932e6f6fe5f1beae96cb10041f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 12 10:54:43 2010 +0000
| 
|     add symlinks
| 
| A	examples/documented/data
| A	examples/documented/matlab
| A	examples/documented/octave
|  
* commit e1eb09d75fc284bc5608395b4ac019c70446c86b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 12 10:10:18 2010 +0000
| 
|     move data directory to trunk and move examples into documented and undocumented
| 
| A	data/DynProg_example.dat
| A	data/DynProg_example_py.dat.mat
| A	data/fm_test_byte.dat
| A	data/fm_test_cube.dat
| A	data/fm_test_dna.dat
| A	data/fm_test_real.dat
| A	data/fm_test_sparsereal.dat
| A	data/fm_test_word.dat
| A	data/fm_train_byte.dat
| A	data/fm_train_cube.dat
| A	data/fm_train_dna.dat
| A	data/fm_train_real.dat
| A	data/fm_train_sparsereal.dat
| A	data/fm_train_word.dat
| A	data/label_train_dna.dat
| A	data/label_train_dna42.dat
| A	data/label_train_multiclass.dat
| A	data/label_train_twoclass.dat
| A	data/train_sparsereal.light
| A	examples/Makefile
| A	examples/README
| D	examples/cmdline/check.sh
| D	examples/cmdline/classifier_gmnpsvm.sg
| D	examples/cmdline/classifier_gpbtsvm.sg
| D	examples/cmdline/classifier_knn.sg
| D	examples/cmdline/classifier_lda.sg
| D	examples/cmdline/classifier_liblinear.sg
| D	examples/cmdline/classifier_libsvm.sg
| D	examples/cmdline/classifier_libsvmmulticlass.sg
| D	examples/cmdline/classifier_libsvmoneclass.sg
| D	examples/cmdline/classifier_mpd.sg
| D	examples/cmdline/classifier_perceptron.sg
| D	examples/cmdline/classifier_subgradientsvm.sg
| D	examples/cmdline/classifier_svmlight.sg
| D	examples/cmdline/classifier_svmlin.sg
| D	examples/cmdline/classifier_svmocas.sg
| D	examples/cmdline/classifier_svmsgd.sg
| D	examples/cmdline/clustering_hierarchical.sg
| D	examples/cmdline/clustering_kmeans.sg
| D	examples/cmdline/distance_braycurtis.sg
| D	examples/cmdline/distance_canberra.sg
| D	examples/cmdline/distance_canberraword.sg
| D	examples/cmdline/distance_chebyshew.sg
| D	examples/cmdline/distance_chisquare.sg
| D	examples/cmdline/distance_cosine.sg
| D	examples/cmdline/distance_euclidean.sg
| D	examples/cmdline/distance_geodesic.sg
| D	examples/cmdline/distance_hammingword.sg
| D	examples/cmdline/distance_jensen.sg
| D	examples/cmdline/distance_manhatten.sg
| D	examples/cmdline/distance_manhattenword.sg
| D	examples/cmdline/distance_minkowski.sg
| D	examples/cmdline/distance_tanimoto.sg
| D	examples/cmdline/distribution_histogram.sg
| D	examples/cmdline/distribution_hmm.sg
| D	examples/cmdline/distribution_linearhmm.sg
| D	examples/cmdline/kernel_chi2.sg
| D	examples/cmdline/kernel_combined.sg
| D	examples/cmdline/kernel_commulongstring.sg
| D	examples/cmdline/kernel_commwordstring.sg
| D	examples/cmdline/kernel_const.sg
| D	examples/cmdline/kernel_diag.sg
| D	examples/cmdline/kernel_distancetokernel.sg
| D	examples/cmdline/kernel_fixeddegreestring.sg
| D	examples/cmdline/kernel_gaussian.sg
| D	examples/cmdline/kernel_gaussianshift.sg
| D	examples/cmdline/kernel_linear.sg
| D	examples/cmdline/kernel_linearbyte.sg
| D	examples/cmdline/kernel_linearstring.sg
| D	examples/cmdline/kernel_linearword.sg
| D	examples/cmdline/kernel_localalignmentstring.sg
| D	examples/cmdline/kernel_localityimprovedstring.sg
| D	examples/cmdline/kernel_oligostring.sg
| D	examples/cmdline/kernel_poly.sg
| D	examples/cmdline/kernel_polymatchstring.sg
| D	examples/cmdline/kernel_polymatchword.sg
| D	examples/cmdline/kernel_sigmoid.sg
| D	examples/cmdline/kernel_simplelocalityimprovedstring.sg
| D	examples/cmdline/kernel_sparse_linear.sg
| D	examples/cmdline/kernel_sparsegaussian.sg
| D	examples/cmdline/kernel_sparsepoly.sg
| D	examples/cmdline/kernel_top.sg
| D	examples/cmdline/kernel_weightedcommwordstring.sg
| D	examples/cmdline/kernel_weighteddegreepositionstring.sg
| D	examples/cmdline/kernel_weighteddegreestring.sg
| D	examples/cmdline/mkl_multiclass.sg
| D	examples/cmdline/preproc_logplusone.sg
| D	examples/cmdline/preproc_normone.sg
| D	examples/cmdline/preproc_prunevarsubmean.sg
| D	examples/cmdline/preproc_sortulongstring.sg
| D	examples/cmdline/preproc_sortwordstring.sg
| D	examples/cmdline/regression_krr.sg
| D	examples/cmdline/regression_libsvr.sg
| D	examples/cmdline/regression_svrlight.sg
| D	examples/data/DynProg_example.dat
| D	examples/data/DynProg_example_py.dat.mat
| D	examples/data/fm_test_byte.dat
| D	examples/data/fm_test_cube.dat
| D	examples/data/fm_test_dna.dat
| D	examples/data/fm_test_real.dat
| D	examples/data/fm_test_sparsereal.dat
| D	examples/data/fm_test_word.dat
| D	examples/data/fm_train_byte.dat
| D	examples/data/fm_train_cube.dat
| D	examples/data/fm_train_dna.dat
| D	examples/data/fm_train_real.dat
| D	examples/data/fm_train_sparsereal.dat
| D	examples/data/fm_train_word.dat
| D	examples/data/label_train_dna.dat
| D	examples/data/label_train_dna42.dat
| D	examples/data/label_train_multiclass.dat
| D	examples/data/label_train_twoclass.dat
| D	examples/data/train_sparsereal.light
| D	examples/elwms/foo.R
| D	examples/elwms/octave_matplotlib.m
| D	examples/elwms/octave_to_python.m
| D	examples/elwms/octave_to_r.m
| D	examples/elwms/python_to_octave.py
| D	examples/elwms/r_to_octave.m
| D	examples/elwms/r_to_python.R
| A	examples/generate_documented.sh
| D	examples/libshogun/Makefile
| D	examples/libshogun/README
| D	examples/libshogun/basic_minimal.cpp
| D	examples/libshogun/classifier_libsvm.cpp
| D	examples/libshogun/classifier_minimal_svm.cpp
| D	examples/libshogun/classifier_mklmulticlass.cpp
| D	examples/libshogun/kernel_gaussian.cpp
| D	examples/libshogun/kernel_revlin.cpp
| D	examples/libshogun/library_dyn_int.cpp
| D	examples/libshogun/library_gc_array.cpp
| D	examples/libshogun/library_hash.cpp
| D	examples/libshogun/library_indirect_object.cpp
| D	examples/matlab
| D	examples/matlab_and_octave/check.sh
| D	examples/matlab_and_octave/classifier_gmnpsvm.m
| D	examples/matlab_and_octave/classifier_gpbtsvm.m
| D	examples/matlab_and_octave/classifier_knn.m
| D	examples/matlab_and_octave/classifier_lda.m
| D	examples/matlab_and_octave/classifier_liblinear.m
| D	examples/matlab_and_octave/classifier_liblinear_objective.m
| D	examples/matlab_and_octave/classifier_libsvm.m
| D	examples/matlab_and_octave/classifier_libsvmmulticlass.m
| D	examples/matlab_and_octave/classifier_libsvmoneclass.m
| D	examples/matlab_and_octave/classifier_lpboost.m
| D	examples/matlab_and_octave/classifier_lpm.m
| D	examples/matlab_and_octave/classifier_mpdsvm.m
| D	examples/matlab_and_octave/classifier_perceptron.m
| D	examples/matlab_and_octave/classifier_subgradientsvm.m
| D	examples/matlab_and_octave/classifier_svmlight.m
| D	examples/matlab_and_octave/classifier_svmlight_wdkernel.m
| D	examples/matlab_and_octave/classifier_svmlight_wds_batch.m
| D	examples/matlab_and_octave/classifier_svmlin.m
| D	examples/matlab_and_octave/classifier_svmocas.m
| D	examples/matlab_and_octave/classifier_svmocas_objective.m
| D	examples/matlab_and_octave/classifier_svmsgd.m
| D	examples/matlab_and_octave/classifier_svmsgd_objective.m
| D	examples/matlab_and_octave/clustering_hierarchical.m
| D	examples/matlab_and_octave/clustering_kmeans.m
| D	examples/matlab_and_octave/distance_braycurtis.m
| D	examples/matlab_and_octave/distance_canberra.m
| D	examples/matlab_and_octave/distance_canberraword.m
| D	examples/matlab_and_octave/distance_chebyshew.m
| D	examples/matlab_and_octave/distance_chisquare.m
| D	examples/matlab_and_octave/distance_cosine.m
| D	examples/matlab_and_octave/distance_euclidian.m
| D	examples/matlab_and_octave/distance_geodesic.m
| D	examples/matlab_and_octave/distance_hammingword.m
| D	examples/matlab_and_octave/distance_jensen.m
| D	examples/matlab_and_octave/distance_manhatten.m
| D	examples/matlab_and_octave/distance_manhattenword.m
| D	examples/matlab_and_octave/distance_minkowski.m
| D	examples/matlab_and_octave/distance_tanimoto.m
| D	examples/matlab_and_octave/distribution_histogram.m
| D	examples/matlab_and_octave/distribution_hmm.m
| D	examples/matlab_and_octave/distribution_linearhmm.m
| D	examples/matlab_and_octave/distribution_markovchain.m
| D	examples/matlab_and_octave/features_dot_polynomial.m
| D	examples/matlab_and_octave/features_dot_wdfeatures.m
| D	examples/matlab_and_octave/features_dot_weightedspec.m
| D	examples/matlab_and_octave/features_string.m
| D	examples/matlab_and_octave/graphical/cluster_hierarchical.m
| D	examples/matlab_and_octave/graphical/cluster_kmeans.m
| D	examples/matlab_and_octave/graphical/entropy.m
| D	examples/matlab_and_octave/graphical/hmm.m
| D	examples/matlab_and_octave/graphical/lda_classification.m
| D	examples/matlab_and_octave/graphical/local_alignment_kernel.m
| D	examples/matlab_and_octave/graphical/mkl_pseudo_dna.m
| D	examples/matlab_and_octave/graphical/spec_interp.m
| D	examples/matlab_and_octave/graphical/svm_classification.m
| D	examples/matlab_and_octave/graphical/svm_multiclass.m
| D	examples/matlab_and_octave/graphical/svr_regression.m
| D	examples/matlab_and_octave/graphical/test_gnpp_svm.m
| D	examples/matlab_and_octave/graphical/test_poim_wds.m
| D	examples/matlab_and_octave/graphical/test_regression.m
| D	examples/matlab_and_octave/graphical/test_regression_mkl.m
| D	examples/matlab_and_octave/graphical/test_spec_interp.m
| D	examples/matlab_and_octave/graphical/test_svm_multiclass.m
| D	examples/matlab_and_octave/graphical/test_wd_wds_parallel.m
| D	examples/matlab_and_octave/graphical/wds_consensus.m
| D	examples/matlab_and_octave/graphical/wds_shift_interp.m
| D	examples/matlab_and_octave/kernels_chi2.m
| D	examples/matlab_and_octave/kernels_combined.m
| D	examples/matlab_and_octave/kernels_commulongstring.m
| D	examples/matlab_and_octave/kernels_commwordstring.m
| D	examples/matlab_and_octave/kernels_const.m
| D	examples/matlab_and_octave/kernels_custom.m
| D	examples/matlab_and_octave/kernels_diag.m
| D	examples/matlab_and_octave/kernels_distance.m
| D	examples/matlab_and_octave/kernels_fixeddegreestring.m
| D	examples/matlab_and_octave/kernels_gaussian.m
| D	examples/matlab_and_octave/kernels_gaussianshift.m
| D	examples/matlab_and_octave/kernels_histogramword.m
| D	examples/matlab_and_octave/kernels_lik.m
| D	examples/matlab_and_octave/kernels_linear.m
| D	examples/matlab_and_octave/kernels_linearbyte.m
| D	examples/matlab_and_octave/kernels_linearstring.m
| D	examples/matlab_and_octave/kernels_linearword.m
| D	examples/matlab_and_octave/kernels_localalignmentstring.m
| D	examples/matlab_and_octave/kernels_localityimprovedstring.m
| D	examples/matlab_and_octave/kernels_oligostring.m
| D	examples/matlab_and_octave/kernels_poly.m
| D	examples/matlab_and_octave/kernels_polymatchstring.m
| D	examples/matlab_and_octave/kernels_polymatchword.m
| D	examples/matlab_and_octave/kernels_sigmoid.m
| D	examples/matlab_and_octave/kernels_simplelocalityimprovedstring.m
| D	examples/matlab_and_octave/kernels_sparsegaussian.m
| D	examples/matlab_and_octave/kernels_sparselinear.m
| D	examples/matlab_and_octave/kernels_sparsepoly.m
| D	examples/matlab_and_octave/kernels_spectrum.m
| D	examples/matlab_and_octave/kernels_weighted_spec.m
| D	examples/matlab_and_octave/kernels_weightedcommwordstring.m
| D	examples/matlab_and_octave/kernels_weighteddegreepositionstring.m
| D	examples/matlab_and_octave/kernels_weighteddegreestring.m
| D	examples/matlab_and_octave/mkl_classify_christmas_star.m
| D	examples/matlab_and_octave/mkl_multiclass.m
| D	examples/matlab_and_octave/mkl_regression_3sine_waves.m
| D	examples/matlab_and_octave/mkl_regression_sine.m
| D	examples/matlab_and_octave/preproc_logplusone.m
| D	examples/matlab_and_octave/preproc_normone.m
| D	examples/matlab_and_octave/preproc_prunevarsubmean.m
| D	examples/matlab_and_octave/preproc_sortulongstring.m
| D	examples/matlab_and_octave/preproc_sortwordstring.m
| D	examples/matlab_and_octave/regression_krr.m
| D	examples/matlab_and_octave/regression_libsvr.m
| D	examples/matlab_and_octave/regression_svrlight.m
| D	examples/matlab_and_octave/structure_dynprog.m
| D	examples/matlab_and_octave/tests/test_classifier.m
| D	examples/matlab_and_octave/tests/test_combined.m
| D	examples/matlab_and_octave/tests/test_combined2.m
| D	examples/matlab_and_octave/tests/test_complex_scenario.m
| D	examples/matlab_and_octave/tests/test_custom_kernel.m
| D	examples/matlab_and_octave/tests/test_interface.m
| D	examples/matlab_and_octave/tests/test_kernel_optimization.m
| D	examples/matlab_and_octave/tests/test_knn.m
| D	examples/matlab_and_octave/tests/test_l2svm.m
| D	examples/matlab_and_octave/tests/test_linadd.m
| D	examples/matlab_and_octave/tests/test_linear_methods.m
| D	examples/matlab_and_octave/tests/test_mkl.m
| D	examples/matlab_and_octave/tests/test_mkl_svr.m
| D	examples/matlab_and_octave/tests/test_mkl_svr_wrapper.m
| D	examples/matlab_and_octave/tests/test_ocas_normalization.m
| D	examples/matlab_and_octave/tests/test_one_class_svm.m
| D	examples/matlab_and_octave/tests/test_regression_linadd.m
| D	examples/matlab_and_octave/tests/test_sliding_window.m
| D	examples/matlab_and_octave/tests/test_sparse.m
| D	examples/matlab_and_octave/tests/test_sparse_methods.m
| D	examples/matlab_and_octave/tests/test_spec_consensus.m
| D	examples/matlab_and_octave/tests/test_subgradsvm.m
| D	examples/matlab_and_octave/tests/test_svmlight_libsvm.m
| D	examples/matlab_and_octave/tests/test_svrlight_libsvr.m
| D	examples/matlab_and_octave/tests/test_tppk.m
| D	examples/matlab_and_octave/tests/test_wd_kernel.m
| D	examples/matlab_and_octave/tests/test_wd_linadd.m
| D	examples/matlab_and_octave/tests/test_wdocas.m
| D	examples/matlab_and_octave/tests/test_wds_consensus.m
| D	examples/matlab_and_octave/tests/test_wds_kernel.m
| D	examples/matlab_and_octave/tests/test_wdshift_position_weights.m
| D	examples/matlab_and_octave/tests/test_weighted_spectrum.m
| D	examples/matlab_and_octave/tools/PCACut.m
| D	examples/matlab_and_octave/tools/README
| D	examples/matlab_and_octave/tools/calcroc.m
| D	examples/matlab_and_octave/tools/calcrocscore.m
| D	examples/matlab_and_octave/tools/graph_hmm.m
| D	examples/matlab_and_octave/tools/graph_hmm2.m
| D	examples/matlab_and_octave/tools/load_matrix.m
| D	examples/matlab_and_octave/tools/model_to_graph.m
| D	examples/matlab_and_octave/tools/plotroc.m
| D	examples/matlab_and_octave/tools/read_feature_matrix.m
| D	examples/matlab_and_octave/tools/readroc.m
| D	examples/matlab_and_octave/tools/save_as_ascii.m
| D	examples/matlab_and_octave/tools/save_as_double.m
| D	examples/octave
| D	examples/octave_modular/check.sh
| D	examples/octave_modular/classifier_domainadaptationsvm_modular.m
| D	examples/octave_modular/classifier_gmnpsvm_modular.m
| D	examples/octave_modular/classifier_gpbtsvm_modular.m
| D	examples/octave_modular/classifier_knn_modular.m
| D	examples/octave_modular/classifier_lda_modular.m
| D	examples/octave_modular/classifier_liblinear_modular.m
| D	examples/octave_modular/classifier_libsvm_minimal_modular.m
| D	examples/octave_modular/classifier_libsvm_modular.m
| D	examples/octave_modular/classifier_libsvmmulticlass_modular.m
| D	examples/octave_modular/classifier_libsvmoneclass_modular.m
| D	examples/octave_modular/classifier_mpdsvm_modular.m
| D	examples/octave_modular/classifier_perceptron_modular.m
| D	examples/octave_modular/classifier_subgradientsvm_modular.m
| D	examples/octave_modular/classifier_svmlight_modular.m
| D	examples/octave_modular/classifier_svmlin_modular.m
| D	examples/octave_modular/classifier_svmocas_modular.m
| D	examples/octave_modular/classifier_svmsgd_modular.m
| D	examples/octave_modular/clustering_hierarchical_modular.m
| D	examples/octave_modular/clustering_kmeans_modular.m
| D	examples/octave_modular/distance_braycurtis_modular.m
| D	examples/octave_modular/distance_canberra_modular.m
| D	examples/octave_modular/distance_canberraword_modular.m
| D	examples/octave_modular/distance_chebyshew_modular.m
| D	examples/octave_modular/distance_chisquare_modular.m
| D	examples/octave_modular/distance_cosine_modular.m
| D	examples/octave_modular/distance_euclidian_modular.m
| D	examples/octave_modular/distance_geodesic_modular.m
| D	examples/octave_modular/distance_hammingword_modular.m
| D	examples/octave_modular/distance_jensen_modular.m
| D	examples/octave_modular/distance_manhatten_modular.m
| D	examples/octave_modular/distance_manhattenword_modular.m
| D	examples/octave_modular/distance_minkowski_modular.m
| D	examples/octave_modular/distance_sparseeuclidian_modular.m
| D	examples/octave_modular/distance_tanimoto_modular.m
| D	examples/octave_modular/distribution_histogram_modular.m
| D	examples/octave_modular/distribution_hmm_modular.m
| D	examples/octave_modular/distribution_linearhmm_modular.m
| D	examples/octave_modular/kernel_auc_modular.m
| D	examples/octave_modular/kernel_chi2_modular.m
| D	examples/octave_modular/kernel_combined_modular.m
| D	examples/octave_modular/kernel_commulongstring_modular.m
| D	examples/octave_modular/kernel_commwordstring_modular.m
| D	examples/octave_modular/kernel_const_modular.m
| D	examples/octave_modular/kernel_custom_modular.m
| D	examples/octave_modular/kernel_diag_modular.m
| D	examples/octave_modular/kernel_distance_modular.m
| D	examples/octave_modular/kernel_fixeddegreestring_modular.m
| D	examples/octave_modular/kernel_gaussian_modular.m
| D	examples/octave_modular/kernel_gaussianshift_modular.m
| D	examples/octave_modular/kernel_histogram_modular.m
| D	examples/octave_modular/kernel_linear_modular.m
| D	examples/octave_modular/kernel_linearbyte_modular.m
| D	examples/octave_modular/kernel_linearstring_modular.m
| D	examples/octave_modular/kernel_linearword_modular.m
| D	examples/octave_modular/kernel_localalignmentstring_modular.m
| D	examples/octave_modular/kernel_localityimprovedstring_modular.m
| D	examples/octave_modular/kernel_matchwordstring_modular.m
| D	examples/octave_modular/kernel_oligostring_modular.m
| D	examples/octave_modular/kernel_poly_modular.m
| D	examples/octave_modular/kernel_polymatchstring_modular.m
| D	examples/octave_modular/kernel_polymatchwordstring_modular.m
| D	examples/octave_modular/kernel_sigmoid_modular.m
| D	examples/octave_modular/kernel_simplelocalityimprovedstring_modular.m
| D	examples/octave_modular/kernel_sparsegaussian_modular.m
| D	examples/octave_modular/kernel_sparselinear_modular.m
| D	examples/octave_modular/kernel_sparsepoly_modular.m
| D	examples/octave_modular/kernel_top_modular.m
| D	examples/octave_modular/kernel_weightedcommwordstring_modular.m
| D	examples/octave_modular/kernel_weighteddegreepositionstring_modular.m
| D	examples/octave_modular/kernel_weighteddegreestring_modular.m
| D	examples/octave_modular/mkl_multiclass_modular.m
| D	examples/octave_modular/preproc_commulongstring_modular.m
| D	examples/octave_modular/preproc_commwordstring_modular.m
| D	examples/octave_modular/preproc_logplusone_modular.m
| D	examples/octave_modular/preproc_normone_modular.m
| D	examples/octave_modular/preproc_prunevarsubmean_modular.m
| D	examples/octave_modular/regression_krr_modular.m
| D	examples/octave_modular/regression_libsvr_modular.m
| D	examples/octave_modular/regression_svrlight_modular.m
| D	examples/octave_modular/tools/load_matrix.m
| D	examples/python/check.sh
| D	examples/python/classifier_gmnpsvm.py
| D	examples/python/classifier_gpbtsvm.py
| D	examples/python/classifier_knn.py
| D	examples/python/classifier_lda.py
| D	examples/python/classifier_libsvm.py
| D	examples/python/classifier_libsvmmulticlass.py
| D	examples/python/classifier_libsvmoneclass.py
| D	examples/python/classifier_mpdsvm.py
| D	examples/python/classifier_perceptron.py
| D	examples/python/classifier_svmlight.py
| D	examples/python/clustering_hierarchical.py
| D	examples/python/clustering_kmeans.py
| D	examples/python/distance_braycurtis.py
| D	examples/python/distance_canberra.py
| D	examples/python/distance_canberraword.py
| D	examples/python/distance_chebyshew.py
| D	examples/python/distance_chisquare.py
| D	examples/python/distance_cosine.py
| D	examples/python/distance_euclidian.py
| D	examples/python/distance_geodesic.py
| D	examples/python/distance_hammingword.py
| D	examples/python/distance_jensen.py
| D	examples/python/distance_manhatten.py
| D	examples/python/distance_manhattenword.py
| D	examples/python/distance_minkowski.py
| D	examples/python/distance_tanimoto.py
| D	examples/python/distribution_histogram.py
| D	examples/python/distribution_hmm.py
| D	examples/python/distribution_linearhmm.py
| D	examples/python/graphical/svm_classification.py
| D	examples/python/graphical/svr_regression.py
| D	examples/python/graphical/util.py
| D	examples/python/kernel_chi2.py
| D	examples/python/kernel_combined.py
| D	examples/python/kernel_commulongstring.py
| D	examples/python/kernel_commwordstring.py
| D	examples/python/kernel_const.py
| D	examples/python/kernel_diag.py
| D	examples/python/kernel_distancetokernel.py
| D	examples/python/kernel_fixeddegreestring.py
| D	examples/python/kernel_gaussian.py
| D	examples/python/kernel_gaussianshift.py
| D	examples/python/kernel_linear.py
| D	examples/python/kernel_linear_string.py
| D	examples/python/kernel_linearbyte.py
| D	examples/python/kernel_linearword.py
| D	examples/python/kernel_localalignmentstring.py
| D	examples/python/kernel_localityimprovedstring.py
| D	examples/python/kernel_oligostring.py
| D	examples/python/kernel_pluginestimatehistogram.py
| D	examples/python/kernel_poly.py
| D	examples/python/kernel_polymatchstring.py
| D	examples/python/kernel_polymatchword.py
| D	examples/python/kernel_salzbergstring.py
| D	examples/python/kernel_sigmoid.py
| D	examples/python/kernel_simplelocalityimprovedstring.py
| D	examples/python/kernel_weightedcommwordstring.py
| D	examples/python/kernel_weighteddegreepositionstring.py
| D	examples/python/kernel_weighteddegreestring.py
| D	examples/python/mkl_multiclass.py
| D	examples/python/mkl_regression.py
| D	examples/python/mkl_twoclass.py
| D	examples/python/preproc_logplusone.py
| D	examples/python/preproc_normone.py
| D	examples/python/preproc_prunevarsubmean.py
| D	examples/python/preproc_sortulongstring.py
| D	examples/python/preproc_sortwordstring.py
| D	examples/python/regression_krr.py
| D	examples/python/regression_libsvr.py
| D	examples/python/regression_svrlight.py
| D	examples/python/tools/__init__.py
| D	examples/python/tools/load.py
| D	examples/python_modular/check.sh
| D	examples/python_modular/classifier_custom_kernel_modular.py
| D	examples/python_modular/classifier_domainadaptationsvm_modular.py
| D	examples/python_modular/classifier_gmnpsvm_modular.py
| D	examples/python_modular/classifier_gpbtsvm_modular.py
| D	examples/python_modular/classifier_knn_modular.py
| D	examples/python_modular/classifier_larank_modular.py
| D	examples/python_modular/classifier_lda_modular.py
| D	examples/python_modular/classifier_liblinear_modular.py
| D	examples/python_modular/classifier_libsvm_minimal_modular.py
| D	examples/python_modular/classifier_libsvm_modular.py
| D	examples/python_modular/classifier_libsvmmulticlass_modular.py
| D	examples/python_modular/classifier_libsvmoneclass_modular.py
| D	examples/python_modular/classifier_mpdsvm_modular.py
| D	examples/python_modular/classifier_perceptron_modular.py
| D	examples/python_modular/classifier_subgradientsvm_modular.py
| D	examples/python_modular/classifier_svmlight_batch_linadd_modular.py
| D	examples/python_modular/classifier_svmlight_linear_term_modular.py
| D	examples/python_modular/classifier_svmlight_modular.py
| D	examples/python_modular/classifier_svmlin_modular.py
| D	examples/python_modular/classifier_svmocas_modular.py
| D	examples/python_modular/classifier_svmsgd_modular.py
| D	examples/python_modular/clustering_hierarchical_modular.py
| D	examples/python_modular/clustering_kmeans_modular.py
| D	examples/python_modular/distance_braycurtis_modular.py
| D	examples/python_modular/distance_canberra_modular.py
| D	examples/python_modular/distance_canberraword_modular.py
| D	examples/python_modular/distance_chebyshew_modular.py
| D	examples/python_modular/distance_chisquare_modular.py
| D	examples/python_modular/distance_cosine_modular.py
| D	examples/python_modular/distance_euclidian_modular.py
| D	examples/python_modular/distance_geodesic_modular.py
| D	examples/python_modular/distance_hammingword_modular.py
| D	examples/python_modular/distance_jensen_modular.py
| D	examples/python_modular/distance_manhatten_modular.py
| D	examples/python_modular/distance_manhattenword_modular.py
| D	examples/python_modular/distance_minkowski_modular.py
| D	examples/python_modular/distance_normsquared_modular.py
| D	examples/python_modular/distance_sparseeuclidean_modular.py
| D	examples/python_modular/distance_tanimoto_modular.py
| D	examples/python_modular/distribution_histogram_modular.py
| D	examples/python_modular/distribution_hmm_modular.py
| D	examples/python_modular/distribution_linear_hmm_modular.py
| D	examples/python_modular/features_read_svmlight_format_modular.py
| D	examples/python_modular/features_simple_byte_modular.py
| D	examples/python_modular/features_simple_longint_modular.py
| D	examples/python_modular/features_simple_modular.py
| D	examples/python_modular/features_simple_real_modular.py
| D	examples/python_modular/features_sparse_modular.py
| D	examples/python_modular/features_string_char_compressed_modular.py
| D	examples/python_modular/features_string_char_modular.py
| D	examples/python_modular/features_string_file_char_modular.py
| D	examples/python_modular/features_string_file_modular.py
| D	examples/python_modular/features_string_sliding_window_modular.py
| D	examples/python_modular/features_string_ulong_modular.py
| D	examples/python_modular/features_string_word_modular.py
| D	examples/python_modular/graphical/all_evaluation.py
| D	examples/python_modular/graphical/krr.py
| D	examples/python_modular/graphical/krr_sinc.py
| D	examples/python_modular/graphical/lda.py
| D	examples/python_modular/graphical/multiple_smvs.py
| D	examples/python_modular/graphical/svm.py
| D	examples/python_modular/graphical/svmlin.py
| D	examples/python_modular/graphical/svr_sinc.py
| D	examples/python_modular/graphical/util.py
| D	examples/python_modular/hashed_wd_features_modular.py
| D	examples/python_modular/kernel_auc_modular.py
| D	examples/python_modular/kernel_chi2_modular.py
| D	examples/python_modular/kernel_combined_custom_poly_modular.py
| D	examples/python_modular/kernel_combined_modular.py
| D	examples/python_modular/kernel_comm_ulong_string_modular.py
| D	examples/python_modular/kernel_comm_word_string_modular.py
| D	examples/python_modular/kernel_const_modular.py
| D	examples/python_modular/kernel_custom_modular.py
| D	examples/python_modular/kernel_diag_modular.py
| D	examples/python_modular/kernel_distance_modular.py
| D	examples/python_modular/kernel_fisher_modular.py
| D	examples/python_modular/kernel_fixed_degree_string_modular.py
| D	examples/python_modular/kernel_gaussian_modular.py
| D	examples/python_modular/kernel_gaussian_shift_modular.py
| D	examples/python_modular/kernel_histogram_word_string_modular.py
| D	examples/python_modular/kernel_linear_byte_modular.py
| D	examples/python_modular/kernel_linear_modular.py
| D	examples/python_modular/kernel_linear_string_modular.py
| D	examples/python_modular/kernel_linear_word_modular.py
| D	examples/python_modular/kernel_local_alignment_string_modular.py
| D	examples/python_modular/kernel_locality_improved_string_modular.py
| D	examples/python_modular/kernel_match_word_string_modular.py
| D	examples/python_modular/kernel_oligo_string_modular.py
| D	examples/python_modular/kernel_poly_match_string_modular.py
| D	examples/python_modular/kernel_poly_match_word_string_modular.py
| D	examples/python_modular/kernel_poly_modular.py
| D	examples/python_modular/kernel_salzberg_word_string_modular.py
| D	examples/python_modular/kernel_sigmoid_modular.py
| D	examples/python_modular/kernel_simple_locality_improved_string_modular.py
| D	examples/python_modular/kernel_sparse_gaussian_modular.py
| D	examples/python_modular/kernel_sparse_linear_modular.py
| D	examples/python_modular/kernel_sparse_poly_modular.py
| D	examples/python_modular/kernel_top_modular.py
| D	examples/python_modular/kernel_weighted_comm_word_string_modular.py
| D	examples/python_modular/kernel_weighted_degree_position_string_modular.py
| D	examples/python_modular/kernel_weighted_degree_string_modular.py
| D	examples/python_modular/mkl_binclass_modular.py
| D	examples/python_modular/mkl_multiclass_modular.py
| D	examples/python_modular/preproc_logplusone_modular.py
| D	examples/python_modular/preproc_normone_modular.py
| D	examples/python_modular/preproc_prunevarsubmean_modular.py
| D	examples/python_modular/preproc_sortulongstring_modular.py
| D	examples/python_modular/preproc_sortwordstring_modular.py
| D	examples/python_modular/regression_krr_modular.py
| D	examples/python_modular/regression_libsvr_modular.py
| D	examples/python_modular/regression_svrlight_modular.py
| D	examples/python_modular/serialization_svmlight_modular.py
| D	examples/python_modular/structure_dynprog_modular.py
| D	examples/python_modular/tests_check_commwordkernel_memleak_modular.py
| D	examples/python_modular/tools/__init__.py
| D	examples/python_modular/tools/load.py
| D	examples/r/check.sh
| D	examples/r/classifier_gmnpsvm.R
| D	examples/r/classifier_gpbtsvm.R
| D	examples/r/classifier_knn.R
| D	examples/r/classifier_lda.R
| D	examples/r/classifier_libsvm.R
| D	examples/r/classifier_libsvmmulticlass.R
| D	examples/r/classifier_libsvmoneclass.R
| D	examples/r/classifier_mpdsvm.R
| D	examples/r/classifier_perceptron.R
| D	examples/r/classifier_svmlight.R
| D	examples/r/clustering_hierarchical.R
| D	examples/r/clustering_kmeans.R
| D	examples/r/distance_braycurtis.R
| D	examples/r/distance_canberra.R
| D	examples/r/distance_canberraword.R
| D	examples/r/distance_chebyshew.R
| D	examples/r/distance_chisquare.R
| D	examples/r/distance_cosine.R
| D	examples/r/distance_euclidian.R
| D	examples/r/distance_geodesic.R
| D	examples/r/distance_hammingword.R
| D	examples/r/distance_jensen.R
| D	examples/r/distance_manhatten.R
| D	examples/r/distance_manhattenword.R
| D	examples/r/distance_minkowski.R
| D	examples/r/distance_tanimoto.R
| D	examples/r/distribution_histogram.R
| D	examples/r/distribution_hmm.R
| D	examples/r/distribution_linearhmm.R
| D	examples/r/graphical/hmm.R
| D	examples/r/graphical/svm_classification.R
| D	examples/r/graphical/svr_regression.R
| D	examples/r/kernel_chi2.R
| D	examples/r/kernel_combined.R
| D	examples/r/kernel_commulongstring.R
| D	examples/r/kernel_commwordstring.R
| D	examples/r/kernel_const.R
| D	examples/r/kernel_diag.R
| D	examples/r/kernel_distancetokernel.R
| D	examples/r/kernel_fixeddegreestring.R
| D	examples/r/kernel_gaussian.R
| D	examples/r/kernel_gaussianshift.R
| D	examples/r/kernel_histogram.R
| D	examples/r/kernel_linear.R
| D	examples/r/kernel_linearstring.R
| D	examples/r/kernel_localalignmentstring.R
| D	examples/r/kernel_localityimprovedstring.R
| D	examples/r/kernel_oligostring.R
| D	examples/r/kernel_poly.R
| D	examples/r/kernel_polymatchstring.R
| D	examples/r/kernel_sigmoid.R
| D	examples/r/kernel_simplelocalityimprovedstring.R
| D	examples/r/kernel_string.R
| D	examples/r/kernel_weightedcommwordstring.R
| D	examples/r/kernel_weighteddegreepositionstring.R
| D	examples/r/kernel_weighteddegreestring.R
| D	examples/r/mkl_classify_christmas_star.R
| D	examples/r/mkl_multiclass.R
| D	examples/r/mkl_regression_3sine_waves.R
| D	examples/r/mkl_regression_sine.R
| D	examples/r/mkl_wd.R
| D	examples/r/preproc_logplusone.R
| D	examples/r/preproc_normone.R
| D	examples/r/preproc_prunevarsubmean.R
| D	examples/r/preproc_sortulongstring.R
| D	examples/r/preproc_sortwordstring.R
| D	examples/r/regression_krr.R
| D	examples/r/regression_libsvr.R
| D	examples/r/regression_svrlight.R
| D	examples/r_modular/check.sh
| D	examples/r_modular/classifier_gmnpsvm_modular.R
| D	examples/r_modular/classifier_gpbtsvm_modular.R
| D	examples/r_modular/classifier_knn_modular.R
| D	examples/r_modular/classifier_lda_modular.R
| D	examples/r_modular/classifier_liblinear_modular.R
| D	examples/r_modular/classifier_libsvm_modular.R
| D	examples/r_modular/classifier_libsvmmulticlass_modular.R
| D	examples/r_modular/classifier_libsvmoneclass_modular.R
| D	examples/r_modular/classifier_mpdsvm_modular.R
| D	examples/r_modular/classifier_perceptron_modular.R
| D	examples/r_modular/classifier_subgradientsvm_modular.R
| D	examples/r_modular/classifier_svmlight_modular.R
| D	examples/r_modular/classifier_svmlin_modular.R
| D	examples/r_modular/classifier_svmocas_modular.R
| D	examples/r_modular/classifier_svmsgd_modular.R
| D	examples/r_modular/distribution_histogram_modular.R
| D	examples/r_modular/distribution_hmm_modular.R
| D	examples/r_modular/distribution_linearhmm_modular.R
| D	examples/r_modular/kernel_auc_modular.R
| D	examples/r_modular/kernel_chi2_modular.R
| D	examples/r_modular/kernel_combined_modular.R
| D	examples/r_modular/kernel_commulongstring_modular.R
| D	examples/r_modular/kernel_commwordstring_modular.R
| D	examples/r_modular/kernel_const_modular.R
| D	examples/r_modular/kernel_custom_modular.R
| D	examples/r_modular/kernel_diag_modular.R
| D	examples/r_modular/kernel_distancetokernel_modular.R
| D	examples/r_modular/kernel_fixeddegreestring_modular.R
| D	examples/r_modular/kernel_gaussian_modular.R
| D	examples/r_modular/kernel_gaussianshift_modular.R
| D	examples/r_modular/kernel_histogramword_modular.R
| D	examples/r_modular/kernel_linear_modular.R
| D	examples/r_modular/kernel_linearbyte_modular.R
| D	examples/r_modular/kernel_linearstring_modular.R
| D	examples/r_modular/kernel_linearword_modular.R
| D	examples/r_modular/kernel_localalignmentstring_modular.R
| D	examples/r_modular/kernel_localityimprovedstring_modular.R
| D	examples/r_modular/kernel_oligostring_modular.R
| D	examples/r_modular/kernel_poly_modular.R
| D	examples/r_modular/kernel_polymatchstring_modular.R
| D	examples/r_modular/kernel_polymatchword_modular.R
| D	examples/r_modular/kernel_sigmoid_modular.R
| D	examples/r_modular/kernel_simplelocalityimprovedstring_modular.R
| D	examples/r_modular/kernel_sparsegaussian_modular.R
| D	examples/r_modular/kernel_sparselinear_modular.R
| D	examples/r_modular/kernel_sparsepoly_modular.R
| D	examples/r_modular/kernel_topfisher_modular.R
| D	examples/r_modular/kernel_weightedcommwordstring_modular.R
| D	examples/r_modular/kernel_weighteddegreepositionstring_modular.R
| D	examples/r_modular/kernel_weighteddegreestring_modular.R
| D	examples/r_modular/kernel_wordmatch_modular.R
| D	examples/r_modular/mkl_multiclass_modular.R
| D	examples/r_modular/preproc_commulongstring_modular.R
| D	examples/r_modular/preproc_commwordstring_modular.R
| D	examples/r_modular/preproc_logplusone_modular.R
| D	examples/r_modular/preproc_normone_modular.R
| D	examples/r_modular/preproc_prunevarsubmean_modular.R
| A	examples/undocumented/cmdline/check.sh
| A	examples/undocumented/cmdline/classifier_gmnpsvm.sg
| A	examples/undocumented/cmdline/classifier_gpbtsvm.sg
| A	examples/undocumented/cmdline/classifier_knn.sg
| A	examples/undocumented/cmdline/classifier_lda.sg
| A	examples/undocumented/cmdline/classifier_liblinear.sg
| A	examples/undocumented/cmdline/classifier_libsvm.sg
| A	examples/undocumented/cmdline/classifier_libsvmmulticlass.sg
| A	examples/undocumented/cmdline/classifier_libsvmoneclass.sg
| A	examples/undocumented/cmdline/classifier_mpd.sg
| A	examples/undocumented/cmdline/classifier_perceptron.sg
| A	examples/undocumented/cmdline/classifier_subgradientsvm.sg
| A	examples/undocumented/cmdline/classifier_svmlight.sg
| A	examples/undocumented/cmdline/classifier_svmlin.sg
| A	examples/undocumented/cmdline/classifier_svmocas.sg
| A	examples/undocumented/cmdline/classifier_svmsgd.sg
| A	examples/undocumented/cmdline/clustering_hierarchical.sg
| A	examples/undocumented/cmdline/clustering_kmeans.sg
| A	examples/undocumented/cmdline/distance_braycurtis.sg
| A	examples/undocumented/cmdline/distance_canberra.sg
| A	examples/undocumented/cmdline/distance_canberraword.sg
| A	examples/undocumented/cmdline/distance_chebyshew.sg
| A	examples/undocumented/cmdline/distance_chisquare.sg
| A	examples/undocumented/cmdline/distance_cosine.sg
| A	examples/undocumented/cmdline/distance_euclidean.sg
| A	examples/undocumented/cmdline/distance_geodesic.sg
| A	examples/undocumented/cmdline/distance_hammingword.sg
| A	examples/undocumented/cmdline/distance_jensen.sg
| A	examples/undocumented/cmdline/distance_manhatten.sg
| A	examples/undocumented/cmdline/distance_manhattenword.sg
| A	examples/undocumented/cmdline/distance_minkowski.sg
| A	examples/undocumented/cmdline/distance_tanimoto.sg
| A	examples/undocumented/cmdline/distribution_histogram.sg
| A	examples/undocumented/cmdline/distribution_hmm.sg
| A	examples/undocumented/cmdline/distribution_linearhmm.sg
| A	examples/undocumented/cmdline/kernel_chi2.sg
| A	examples/undocumented/cmdline/kernel_combined.sg
| A	examples/undocumented/cmdline/kernel_commulongstring.sg
| A	examples/undocumented/cmdline/kernel_commwordstring.sg
| A	examples/undocumented/cmdline/kernel_const.sg
| A	examples/undocumented/cmdline/kernel_diag.sg
| A	examples/undocumented/cmdline/kernel_distancetokernel.sg
| A	examples/undocumented/cmdline/kernel_fixeddegreestring.sg
| A	examples/undocumented/cmdline/kernel_gaussian.sg
| A	examples/undocumented/cmdline/kernel_gaussianshift.sg
| A	examples/undocumented/cmdline/kernel_linear.sg
| A	examples/undocumented/cmdline/kernel_linearbyte.sg
| A	examples/undocumented/cmdline/kernel_linearstring.sg
| A	examples/undocumented/cmdline/kernel_linearword.sg
| A	examples/undocumented/cmdline/kernel_localalignmentstring.sg
| A	examples/undocumented/cmdline/kernel_localityimprovedstring.sg
| A	examples/undocumented/cmdline/kernel_oligostring.sg
| A	examples/undocumented/cmdline/kernel_poly.sg
| A	examples/undocumented/cmdline/kernel_polymatchstring.sg
| A	examples/undocumented/cmdline/kernel_polymatchword.sg
| A	examples/undocumented/cmdline/kernel_sigmoid.sg
| A	examples/undocumented/cmdline/kernel_simplelocalityimprovedstring.sg
| A	examples/undocumented/cmdline/kernel_sparse_linear.sg
| A	examples/undocumented/cmdline/kernel_sparsegaussian.sg
| A	examples/undocumented/cmdline/kernel_sparsepoly.sg
| A	examples/undocumented/cmdline/kernel_top.sg
| A	examples/undocumented/cmdline/kernel_weightedcommwordstring.sg
| A	examples/undocumented/cmdline/kernel_weighteddegreepositionstring.sg
| A	examples/undocumented/cmdline/kernel_weighteddegreestring.sg
| A	examples/undocumented/cmdline/mkl_multiclass.sg
| A	examples/undocumented/cmdline/preproc_logplusone.sg
| A	examples/undocumented/cmdline/preproc_normone.sg
| A	examples/undocumented/cmdline/preproc_prunevarsubmean.sg
| A	examples/undocumented/cmdline/preproc_sortulongstring.sg
| A	examples/undocumented/cmdline/preproc_sortwordstring.sg
| A	examples/undocumented/cmdline/regression_krr.sg
| A	examples/undocumented/cmdline/regression_libsvr.sg
| A	examples/undocumented/cmdline/regression_svrlight.sg
| A	examples/undocumented/data
| A	examples/undocumented/elwms/foo.R
| A	examples/undocumented/elwms/octave_matplotlib.m
| A	examples/undocumented/elwms/octave_to_python.m
| A	examples/undocumented/elwms/octave_to_r.m
| A	examples/undocumented/elwms/python_to_octave.py
| A	examples/undocumented/elwms/r_to_octave.m
| A	examples/undocumented/elwms/r_to_python.R
| A	examples/undocumented/matlab
| A	examples/undocumented/octave
| A	examples/undocumented/octave_modular/check.sh
| A	examples/undocumented/octave_modular/classifier_domainadaptationsvm_modular.m
| A	examples/undocumented/octave_modular/classifier_gmnpsvm_modular.m
| A	examples/undocumented/octave_modular/classifier_gpbtsvm_modular.m
| A	examples/undocumented/octave_modular/classifier_knn_modular.m
| A	examples/undocumented/octave_modular/classifier_lda_modular.m
| A	examples/undocumented/octave_modular/classifier_liblinear_modular.m
| A	examples/undocumented/octave_modular/classifier_libsvm_minimal_modular.m
| A	examples/undocumented/octave_modular/classifier_libsvm_modular.m
| A	examples/undocumented/octave_modular/classifier_libsvmmulticlass_modular.m
| A	examples/undocumented/octave_modular/classifier_libsvmoneclass_modular.m
| A	examples/undocumented/octave_modular/classifier_mpdsvm_modular.m
| A	examples/undocumented/octave_modular/classifier_perceptron_modular.m
| A	examples/undocumented/octave_modular/classifier_subgradientsvm_modular.m
| A	examples/undocumented/octave_modular/classifier_svmlight_modular.m
| A	examples/undocumented/octave_modular/classifier_svmlin_modular.m
| A	examples/undocumented/octave_modular/classifier_svmocas_modular.m
| A	examples/undocumented/octave_modular/classifier_svmsgd_modular.m
| A	examples/undocumented/octave_modular/clustering_hierarchical_modular.m
| A	examples/undocumented/octave_modular/clustering_kmeans_modular.m
| A	examples/undocumented/octave_modular/distance_braycurtis_modular.m
| A	examples/undocumented/octave_modular/distance_canberra_modular.m
| A	examples/undocumented/octave_modular/distance_canberraword_modular.m
| A	examples/undocumented/octave_modular/distance_chebyshew_modular.m
| A	examples/undocumented/octave_modular/distance_chisquare_modular.m
| A	examples/undocumented/octave_modular/distance_cosine_modular.m
| A	examples/undocumented/octave_modular/distance_euclidian_modular.m
| A	examples/undocumented/octave_modular/distance_geodesic_modular.m
| A	examples/undocumented/octave_modular/distance_hammingword_modular.m
| A	examples/undocumented/octave_modular/distance_jensen_modular.m
| A	examples/undocumented/octave_modular/distance_manhatten_modular.m
| A	examples/undocumented/octave_modular/distance_manhattenword_modular.m
| A	examples/undocumented/octave_modular/distance_minkowski_modular.m
| A	examples/undocumented/octave_modular/distance_sparseeuclidian_modular.m
| A	examples/undocumented/octave_modular/distance_tanimoto_modular.m
| A	examples/undocumented/octave_modular/distribution_histogram_modular.m
| A	examples/undocumented/octave_modular/distribution_hmm_modular.m
| A	examples/undocumented/octave_modular/distribution_linearhmm_modular.m
| A	examples/undocumented/octave_modular/kernel_auc_modular.m
| A	examples/undocumented/octave_modular/kernel_chi2_modular.m
| A	examples/undocumented/octave_modular/kernel_combined_modular.m
| A	examples/undocumented/octave_modular/kernel_commulongstring_modular.m
| A	examples/undocumented/octave_modular/kernel_commwordstring_modular.m
| A	examples/undocumented/octave_modular/kernel_const_modular.m
| A	examples/undocumented/octave_modular/kernel_custom_modular.m
| A	examples/undocumented/octave_modular/kernel_diag_modular.m
| A	examples/undocumented/octave_modular/kernel_distance_modular.m
| A	examples/undocumented/octave_modular/kernel_fixeddegreestring_modular.m
| A	examples/undocumented/octave_modular/kernel_gaussian_modular.m
| A	examples/undocumented/octave_modular/kernel_gaussianshift_modular.m
| A	examples/undocumented/octave_modular/kernel_histogram_modular.m
| A	examples/undocumented/octave_modular/kernel_linear_modular.m
| A	examples/undocumented/octave_modular/kernel_linearbyte_modular.m
| A	examples/undocumented/octave_modular/kernel_linearstring_modular.m
| A	examples/undocumented/octave_modular/kernel_linearword_modular.m
| A	examples/undocumented/octave_modular/kernel_localalignmentstring_modular.m
| A	examples/undocumented/octave_modular/kernel_localityimprovedstring_modular.m
| A	examples/undocumented/octave_modular/kernel_matchwordstring_modular.m
| A	examples/undocumented/octave_modular/kernel_oligostring_modular.m
| A	examples/undocumented/octave_modular/kernel_poly_modular.m
| A	examples/undocumented/octave_modular/kernel_polymatchstring_modular.m
| A	examples/undocumented/octave_modular/kernel_polymatchwordstring_modular.m
| A	examples/undocumented/octave_modular/kernel_sigmoid_modular.m
| A	examples/undocumented/octave_modular/kernel_simplelocalityimprovedstring_modular.m
| A	examples/undocumented/octave_modular/kernel_sparsegaussian_modular.m
| A	examples/undocumented/octave_modular/kernel_sparselinear_modular.m
| A	examples/undocumented/octave_modular/kernel_sparsepoly_modular.m
| A	examples/undocumented/octave_modular/kernel_top_modular.m
| A	examples/undocumented/octave_modular/kernel_weightedcommwordstring_modular.m
| A	examples/undocumented/octave_modular/kernel_weighteddegreepositionstring_modular.m
| A	examples/undocumented/octave_modular/kernel_weighteddegreestring_modular.m
| A	examples/undocumented/octave_modular/mkl_multiclass_modular.m
| A	examples/undocumented/octave_modular/preproc_commulongstring_modular.m
| A	examples/undocumented/octave_modular/preproc_commwordstring_modular.m
| A	examples/undocumented/octave_modular/preproc_logplusone_modular.m
| A	examples/undocumented/octave_modular/preproc_normone_modular.m
| A	examples/undocumented/octave_modular/preproc_prunevarsubmean_modular.m
| A	examples/undocumented/octave_modular/regression_krr_modular.m
| A	examples/undocumented/octave_modular/regression_libsvr_modular.m
| A	examples/undocumented/octave_modular/regression_svrlight_modular.m
| A	examples/undocumented/octave_modular/tools/load_matrix.m
| A	examples/undocumented/python/check.sh
| A	examples/undocumented/python/classifier_gmnpsvm.py
| A	examples/undocumented/python/classifier_gpbtsvm.py
| A	examples/undocumented/python/classifier_knn.py
| A	examples/undocumented/python/classifier_lda.py
| A	examples/undocumented/python/classifier_libsvm.py
| A	examples/undocumented/python/classifier_libsvmmulticlass.py
| A	examples/undocumented/python/classifier_libsvmoneclass.py
| A	examples/undocumented/python/classifier_mpdsvm.py
| A	examples/undocumented/python/classifier_perceptron.py
| A	examples/undocumented/python/classifier_svmlight.py
| A	examples/undocumented/python/clustering_hierarchical.py
| A	examples/undocumented/python/clustering_kmeans.py
| A	examples/undocumented/python/distance_braycurtis.py
| A	examples/undocumented/python/distance_canberra.py
| A	examples/undocumented/python/distance_canberraword.py
| A	examples/undocumented/python/distance_chebyshew.py
| A	examples/undocumented/python/distance_chisquare.py
| A	examples/undocumented/python/distance_cosine.py
| A	examples/undocumented/python/distance_euclidian.py
| A	examples/undocumented/python/distance_geodesic.py
| A	examples/undocumented/python/distance_hammingword.py
| A	examples/undocumented/python/distance_jensen.py
| A	examples/undocumented/python/distance_manhatten.py
| A	examples/undocumented/python/distance_manhattenword.py
| A	examples/undocumented/python/distance_minkowski.py
| A	examples/undocumented/python/distance_tanimoto.py
| A	examples/undocumented/python/distribution_histogram.py
| A	examples/undocumented/python/distribution_hmm.py
| A	examples/undocumented/python/distribution_linearhmm.py
| A	examples/undocumented/python/graphical/svm_classification.py
| A	examples/undocumented/python/graphical/svr_regression.py
| A	examples/undocumented/python/graphical/util.py
| A	examples/undocumented/python/kernel_chi2.py
| A	examples/undocumented/python/kernel_combined.py
| A	examples/undocumented/python/kernel_commulongstring.py
| A	examples/undocumented/python/kernel_commwordstring.py
| A	examples/undocumented/python/kernel_const.py
| A	examples/undocumented/python/kernel_diag.py
| A	examples/undocumented/python/kernel_distancetokernel.py
| A	examples/undocumented/python/kernel_fixeddegreestring.py
| A	examples/undocumented/python/kernel_gaussian.py
| A	examples/undocumented/python/kernel_gaussianshift.py
| A	examples/undocumented/python/kernel_linear.py
| A	examples/undocumented/python/kernel_linear_string.py
| A	examples/undocumented/python/kernel_linearbyte.py
| A	examples/undocumented/python/kernel_linearword.py
| A	examples/undocumented/python/kernel_localalignmentstring.py
| A	examples/undocumented/python/kernel_localityimprovedstring.py
| A	examples/undocumented/python/kernel_oligostring.py
| A	examples/undocumented/python/kernel_pluginestimatehistogram.py
| A	examples/undocumented/python/kernel_poly.py
| A	examples/undocumented/python/kernel_polymatchstring.py
| A	examples/undocumented/python/kernel_polymatchword.py
| A	examples/undocumented/python/kernel_salzbergstring.py
| A	examples/undocumented/python/kernel_sigmoid.py
| A	examples/undocumented/python/kernel_simplelocalityimprovedstring.py
| A	examples/undocumented/python/kernel_weightedcommwordstring.py
| A	examples/undocumented/python/kernel_weighteddegreepositionstring.py
| A	examples/undocumented/python/kernel_weighteddegreestring.py
| A	examples/undocumented/python/mkl_multiclass.py
| A	examples/undocumented/python/mkl_regression.py
| A	examples/undocumented/python/mkl_twoclass.py
| A	examples/undocumented/python/preproc_logplusone.py
| A	examples/undocumented/python/preproc_normone.py
| A	examples/undocumented/python/preproc_prunevarsubmean.py
| A	examples/undocumented/python/preproc_sortulongstring.py
| A	examples/undocumented/python/preproc_sortwordstring.py
| A	examples/undocumented/python/regression_krr.py
| A	examples/undocumented/python/regression_libsvr.py
| A	examples/undocumented/python/regression_svrlight.py
| A	examples/undocumented/python/tools/__init__.py
| A	examples/undocumented/python/tools/load.py
| A	examples/undocumented/r/check.sh
| A	examples/undocumented/r/classifier_gmnpsvm.R
| A	examples/undocumented/r/classifier_gpbtsvm.R
| A	examples/undocumented/r/classifier_knn.R
| A	examples/undocumented/r/classifier_lda.R
| A	examples/undocumented/r/classifier_libsvm.R
| A	examples/undocumented/r/classifier_libsvmmulticlass.R
| A	examples/undocumented/r/classifier_libsvmoneclass.R
| A	examples/undocumented/r/classifier_mpdsvm.R
| A	examples/undocumented/r/classifier_perceptron.R
| A	examples/undocumented/r/classifier_svmlight.R
| A	examples/undocumented/r/clustering_hierarchical.R
| A	examples/undocumented/r/clustering_kmeans.R
| A	examples/undocumented/r/distance_braycurtis.R
| A	examples/undocumented/r/distance_canberra.R
| A	examples/undocumented/r/distance_canberraword.R
| A	examples/undocumented/r/distance_chebyshew.R
| A	examples/undocumented/r/distance_chisquare.R
| A	examples/undocumented/r/distance_cosine.R
| A	examples/undocumented/r/distance_euclidian.R
| A	examples/undocumented/r/distance_geodesic.R
| A	examples/undocumented/r/distance_hammingword.R
| A	examples/undocumented/r/distance_jensen.R
| A	examples/undocumented/r/distance_manhatten.R
| A	examples/undocumented/r/distance_manhattenword.R
| A	examples/undocumented/r/distance_minkowski.R
| A	examples/undocumented/r/distance_tanimoto.R
| A	examples/undocumented/r/distribution_histogram.R
| A	examples/undocumented/r/distribution_hmm.R
| A	examples/undocumented/r/distribution_linearhmm.R
| A	examples/undocumented/r/graphical/hmm.R
| A	examples/undocumented/r/graphical/svm_classification.R
| A	examples/undocumented/r/graphical/svr_regression.R
| A	examples/undocumented/r/kernel_chi2.R
| A	examples/undocumented/r/kernel_combined.R
| A	examples/undocumented/r/kernel_commulongstring.R
| A	examples/undocumented/r/kernel_commwordstring.R
| A	examples/undocumented/r/kernel_const.R
| A	examples/undocumented/r/kernel_diag.R
| A	examples/undocumented/r/kernel_distancetokernel.R
| A	examples/undocumented/r/kernel_fixeddegreestring.R
| A	examples/undocumented/r/kernel_gaussian.R
| A	examples/undocumented/r/kernel_gaussianshift.R
| A	examples/undocumented/r/kernel_histogram.R
| A	examples/undocumented/r/kernel_linear.R
| A	examples/undocumented/r/kernel_linearstring.R
| A	examples/undocumented/r/kernel_localalignmentstring.R
| A	examples/undocumented/r/kernel_localityimprovedstring.R
| A	examples/undocumented/r/kernel_oligostring.R
| A	examples/undocumented/r/kernel_poly.R
| A	examples/undocumented/r/kernel_polymatchstring.R
| A	examples/undocumented/r/kernel_sigmoid.R
| A	examples/undocumented/r/kernel_simplelocalityimprovedstring.R
| A	examples/undocumented/r/kernel_string.R
| A	examples/undocumented/r/kernel_weightedcommwordstring.R
| A	examples/undocumented/r/kernel_weighteddegreepositionstring.R
| A	examples/undocumented/r/kernel_weighteddegreestring.R
| A	examples/undocumented/r/mkl_classify_christmas_star.R
| A	examples/undocumented/r/mkl_multiclass.R
| A	examples/undocumented/r/mkl_regression_3sine_waves.R
| A	examples/undocumented/r/mkl_regression_sine.R
| A	examples/undocumented/r/mkl_wd.R
| A	examples/undocumented/r/preproc_logplusone.R
| A	examples/undocumented/r/preproc_normone.R
| A	examples/undocumented/r/preproc_prunevarsubmean.R
| A	examples/undocumented/r/preproc_sortulongstring.R
| A	examples/undocumented/r/preproc_sortwordstring.R
| A	examples/undocumented/r/regression_krr.R
| A	examples/undocumented/r/regression_libsvr.R
| A	examples/undocumented/r/regression_svrlight.R
| A	examples/undocumented/r_modular/check.sh
| A	examples/undocumented/r_modular/classifier_gmnpsvm_modular.R
| A	examples/undocumented/r_modular/classifier_gpbtsvm_modular.R
| A	examples/undocumented/r_modular/classifier_knn_modular.R
| A	examples/undocumented/r_modular/classifier_lda_modular.R
| A	examples/undocumented/r_modular/classifier_liblinear_modular.R
| A	examples/undocumented/r_modular/classifier_libsvm_modular.R
| A	examples/undocumented/r_modular/classifier_libsvmmulticlass_modular.R
| A	examples/undocumented/r_modular/classifier_libsvmoneclass_modular.R
| A	examples/undocumented/r_modular/classifier_mpdsvm_modular.R
| A	examples/undocumented/r_modular/classifier_perceptron_modular.R
| A	examples/undocumented/r_modular/classifier_subgradientsvm_modular.R
| A	examples/undocumented/r_modular/classifier_svmlight_modular.R
| A	examples/undocumented/r_modular/classifier_svmlin_modular.R
| A	examples/undocumented/r_modular/classifier_svmocas_modular.R
| A	examples/undocumented/r_modular/classifier_svmsgd_modular.R
| A	examples/undocumented/r_modular/distribution_histogram_modular.R
| A	examples/undocumented/r_modular/distribution_hmm_modular.R
| A	examples/undocumented/r_modular/distribution_linearhmm_modular.R
| A	examples/undocumented/r_modular/kernel_auc_modular.R
| A	examples/undocumented/r_modular/kernel_chi2_modular.R
| A	examples/undocumented/r_modular/kernel_combined_modular.R
| A	examples/undocumented/r_modular/kernel_commulongstring_modular.R
| A	examples/undocumented/r_modular/kernel_commwordstring_modular.R
| A	examples/undocumented/r_modular/kernel_const_modular.R
| A	examples/undocumented/r_modular/kernel_custom_modular.R
| A	examples/undocumented/r_modular/kernel_diag_modular.R
| A	examples/undocumented/r_modular/kernel_distancetokernel_modular.R
| A	examples/undocumented/r_modular/kernel_fixeddegreestring_modular.R
| A	examples/undocumented/r_modular/kernel_gaussian_modular.R
| A	examples/undocumented/r_modular/kernel_gaussianshift_modular.R
| A	examples/undocumented/r_modular/kernel_histogramword_modular.R
| A	examples/undocumented/r_modular/kernel_linear_modular.R
| A	examples/undocumented/r_modular/kernel_linearbyte_modular.R
| A	examples/undocumented/r_modular/kernel_linearstring_modular.R
| A	examples/undocumented/r_modular/kernel_linearword_modular.R
| A	examples/undocumented/r_modular/kernel_localalignmentstring_modular.R
| A	examples/undocumented/r_modular/kernel_localityimprovedstring_modular.R
| A	examples/undocumented/r_modular/kernel_oligostring_modular.R
| A	examples/undocumented/r_modular/kernel_poly_modular.R
| A	examples/undocumented/r_modular/kernel_polymatchstring_modular.R
| A	examples/undocumented/r_modular/kernel_polymatchword_modular.R
| A	examples/undocumented/r_modular/kernel_sigmoid_modular.R
| A	examples/undocumented/r_modular/kernel_simplelocalityimprovedstring_modular.R
| A	examples/undocumented/r_modular/kernel_sparsegaussian_modular.R
| A	examples/undocumented/r_modular/kernel_sparselinear_modular.R
| A	examples/undocumented/r_modular/kernel_sparsepoly_modular.R
| A	examples/undocumented/r_modular/kernel_topfisher_modular.R
| A	examples/undocumented/r_modular/kernel_weightedcommwordstring_modular.R
| A	examples/undocumented/r_modular/kernel_weighteddegreepositionstring_modular.R
| A	examples/undocumented/r_modular/kernel_weighteddegreestring_modular.R
| A	examples/undocumented/r_modular/kernel_wordmatch_modular.R
| A	examples/undocumented/r_modular/mkl_multiclass_modular.R
| A	examples/undocumented/r_modular/preproc_commulongstring_modular.R
| A	examples/undocumented/r_modular/preproc_commwordstring_modular.R
| A	examples/undocumented/r_modular/preproc_logplusone_modular.R
| A	examples/undocumented/r_modular/preproc_normone_modular.R
| A	examples/undocumented/r_modular/preproc_prunevarsubmean_modular.R
|  
* commit 4821b7b30dfe63183c969409bc653f0357f51470
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 9 08:05:21 2010 +0000
| 
|     support Renesas SH architectures (thanks Nobuhiro Iwamatsu for the patch)
| 
| M	src/configure
|  
* commit 0150bb733eb18e63dba489937e292c16d2834657
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 9 02:44:47 2010 +0000
| 
|     fix a potential crasher in get_labels()
| 
| M	src/libshogun/classifier/Classifier.h
|  
* commit 1b78d07aa1b3a2edeb07661b39d81437cd91096e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 6 05:18:13 2010 +0000
| 
|     apply ryotas patch for elastic net lambda setting in libshogun
| 
| M	src/libshogun/classifier/mkl/MKL.cpp
| M	src/libshogun/classifier/mkl/MKL.h
|  
* commit b238476ab5f7832e94db65bf9a93193ca571d02f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 6 05:17:18 2010 +0000
| 
|     apply ryotas patch for setting the lambda elastic net parameter in static interface
| 
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIClassifier.h
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit 6dd344b880e2e64c06b0bd14510a44b18deced28
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 6 05:16:38 2010 +0000
| 
|     apply ryotas patch for elastic net example
| 
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
|  
* commit da9814f03a660e77c0bdee865e113eb48035e9ef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 3 21:31:10 2010 +0000
| 
|     add transposed fkt
| 
| M	src/libshogun/features/SimpleFeatures.h
|  
* commit d379f038e5905cc709baeff7cd4298292feb3592
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 3 14:53:53 2010 +0000
| 
|     add functions to transpose strings/sparse features
| 
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/StringFeatures.h
|  
* commit 28ae04254fab282adecdcb4a7d24a0e115c0eb3e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 1 06:48:56 2010 +0000
| 
|     try to do some reasonable estimates of nnz in a number of dotfeatures
| 
| M	src/libshogun/features/HashedWDFeatures.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/SparsePolyFeatures.h
| M	src/libshogun/features/WDFeatures.h
|  
* commit a316322111a6317a5dd7d2afdf626fe1126cb5d9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 31 23:48:03 2010 +0000
| 
|     compute hash incrementally
| 
| M	src/libshogun/features/SparsePolyFeatures.cpp
|  
* commit 9ea8b7d8aff73cacda3dbc65af4a2cee4e1229d6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 31 21:29:13 2010 +0000
| 
|     fix sparse dot features + hashing
| 
| M	src/libshogun/features/SparsePolyFeatures.cpp
| M	src/libshogun/features/SparsePolyFeatures.h
|  
* commit 6e11d0eaea1f463a38780a89782f68008b995125
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 31 19:13:30 2010 +0000
| 
|     dim fix, update NEWS
| 
| M	src/NEWS
| M	src/libshogun/features/SparsePolyFeatures.cpp
|  
* commit d9e1f74c8afde8fa6051473761b0431e173469e8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 31 11:17:24 2010 +0000
| 
|     add sparse poly features dotfeatures
| 
| M	src/libshogun/features/PolyFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| A	src/libshogun/features/SparsePolyFeatures.cpp
| A	src/libshogun/features/SparsePolyFeatures.h
| M	src/modular/Features.i
|  
* commit 5403ae8adcafd04955df5b039425059384edc27e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 27 12:57:08 2010 +0000
| 
|     fix a too strict error check
| 
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit fbdcdf2b1c1eed199857477d84a03fb2218cd422
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 26 07:02:37 2010 +0000
| 
|     enable progress w/ liblinear
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/Tron.cpp
|  
* commit 0dcab622addddb922ef6ff74e66563d04ed165e9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 25 17:03:17 2010 +0000
| 
|     bugfix in sub idx
| 
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
|  
* commit a60c84cc85b3121e1940f0946837a957e9a53a07
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 25 14:25:14 2010 +0000
| 
|     bugfixes - sub_index needs to be NULL
| 
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
|  
* commit 5455515fb852b1908ed26da5ec9c3af7586f02c1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 25 10:30:38 2010 +0000
| 
|     introduce dense_dot_range_subset()
| 
| M	src/libshogun/classifier/svm/SVM_linear.cpp
| M	src/libshogun/features/CombinedDotFeatures.cpp
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
|  
* commit 10aeb87a42c59ef4b0cfa9f28c0be640a79653f9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 24 19:35:00 2010 +0000
| 
|     properly parallelize hashedwdfeatures
| 
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
|  
* commit 9d306f769d1784ecd73351d09a4044f82f81d48d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 23 22:52:25 2010 +0000
| 
|     fix a bug in combined dot features dense_dot_range
| 
| M	src/libshogun/features/CombinedDotFeatures.cpp
|  
* commit 301d8371d2262332ebe67d6c2b283fdfbe29acec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 23 21:33:52 2010 +0000
| 
|     get transposed wd features to work correctly
| 
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/HashedWDFeatures.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/WDFeatures.cpp
|  
* commit d74d7a10ab1cf3b840655eaf546cc7b0f6030048
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 23 21:33:07 2010 +0000
| 
|     use dot() instead of loop
| 
| M	src/libshogun/classifier/svm/SVM_linear.cpp
| M	src/libshogun/classifier/svm/Tron.cpp
|  
* commit 2625aa3395e9718a7368685516768b66c576b783
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 22 20:11:07 2010 +0000
| 
|     fix combined dot dense range
| 
| M	src/libshogun/features/CombinedDotFeatures.cpp
|  
* commit 72c308eadf9237e83c18d699ecc2285b056f8716
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 22 20:10:00 2010 +0000
| 
|     fix compile error with multitask kernel and add dense_dot_range call to combined dot features
| 
| M	src/libshogun/features/CombinedDotFeatures.cpp
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/kernel/Kernel.h
|  
* commit 925aa612cddf3775923a4e32edb8702b548fa423
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 22 18:25:56 2010 +0000
| 
|     offset fixes
| 
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
|  
* commit fbbc17c2afee1e86673f3f7e3a19334159800ff9
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Jan 22 17:25:31 2010 +0000
| 
|     fixed a few issues
| 
| M	src/libshogun/kernel/MultitaskKernelNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelTreeNormalizer.h
|  
* commit eba997f89d3ab109a9364f3f90f40ff73b330dbd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 22 14:07:57 2010 +0000
| 
|     wip commit
| 
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/StringFeatures.h
|  
* commit 852979466d423f4979c297d607b6c05ab56c2758
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 22 11:11:40 2010 +0000
| 
|     add transposed wd features
| 
| A	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| A	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/StringFeatures.h
| M	src/modular/Features.i
|  
* commit 7bfe8570c9b07d7830465ada7369957a9adc30ac
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 22 04:17:07 2010 +0000
| 
|     - add mkl elastic net comment in mkl examples
|     - add example on how to use hashed wd features
| 
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
| M	examples/matlab_and_octave/mkl_regression_3sine_waves.m
| M	examples/matlab_and_octave/mkl_regression_sine.m
| A	examples/python_modular/hashed_wd_features_modular.py
|  
* commit 82ec4bc8c938fc8bada2c7424b743063247d4fc0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 22 03:56:53 2010 +0000
| 
|     - integrate Ryotas elastic net mkl and wrap liblinear in static interfaces.
|     - update NEWS accordingly
| 
| M	src/NEWS
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/mkl/MKL.cpp
| M	src/libshogun/classifier/mkl/MKL.h
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit 80a57c6bf79d6a2884882e313a59ba98a5b21191
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 21 18:21:15 2010 +0000
| 
|     add get_normalization const fucntion
| 
| M	src/libshogun/features/HashedWDFeatures.h
| M	src/libshogun/features/WDFeatures.h
|  
* commit 53d2466e77554c5efdeddd6cd94d3cc6dfdae508
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 21 17:28:46 2010 +0000
| 
|     in hash wd features, precompute seed taking into account previous start_degree-1 nt and allow external setting of normalization const to be able to concat wdfeatures and hashedwdfeatures
| 
| M	src/libshogun/features/HashedWDFeatures.cpp
| M	src/libshogun/features/HashedWDFeatures.h
| M	src/libshogun/features/WDFeatures.cpp
| M	src/libshogun/features/WDFeatures.h
|  
* commit 03dddacf447466e062615a8cbac2ddfc23bb709a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 21 13:02:19 2010 +0000
| 
|     fix benchmarking for parallel tests
| 
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/lib/Time.h
|  
* commit 285dbe2533536b9e74cfd35ebd2338ca55355f3f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 21 11:00:04 2010 +0000
| 
|     use dense_dot_range() which effectively parallelizes liblinear
| 
| M	src/libshogun/classifier/svm/SVM_linear.cpp
|  
* commit 92d0807515f97f4adb0407f8fcd3e0f9ff94ab2c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 21 06:36:21 2010 +0000
| 
|     fix crasher, forgotten to mask hash to bitsize
| 
| M	src/libshogun/features/HashedWDFeatures.cpp
|  
* commit c4d54547fe59d8e70bc8531b262093f9553e20bd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 20 22:27:43 2010 +0000
| 
|     use incremental hash
| 
| M	src/libshogun/features/HashedWDFeatures.cpp
| M	src/libshogun/features/HashedWDFeatures.h
|  
* commit 022b47a562d8675f0db447ef2c1bc87bccc26026
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 20 22:03:25 2010 +0000
| 
|     add incremental murmur like hash
| 
| M	src/libshogun/lib/Hash.cpp
| M	src/libshogun/lib/Hash.h
|  
* commit 7052572f3eca108c3b767d7289e837524cb04e18
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 20 22:03:13 2010 +0000
| 
|     add example on how to use incremental murmur like hash
| 
| M	examples/libshogun/library_hash.cpp
|  
* commit 16fd608644b273c95135eca49920efbe0c3ea170
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 20 21:05:29 2010 +0000
| 
|     fix crasher and beautify bench outputs
| 
| M	src/libshogun/features/DotFeatures.h
|  
* commit 46590de7fca7dd9454fa8cdd6226e64f47d10c4f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 20 20:26:39 2010 +0000
| 
|     add functions to benchmark dotfeatures
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/lib/Time.h
|  
* commit edc6018d122b27b77f977087944b1f8025962ac5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 20 15:33:37 2010 +0000
| 
|     merge liblinear 1.51: currently solvers for
|     
|     L2R_LR
|     L2R_L2LOSS_SVC_DUAL
|     L2R_L2LOSS_SVC
|     L2R_L1LOSS_SVC_DUAL
|     
|     work.
|     
|     MCSVM_CS, L1R_L2LOSS_SVC, L1R_LR require further work.
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/SVM_linear.cpp
| M	src/libshogun/classifier/svm/SVM_linear.h
| M	src/libshogun/features/SparseFeatures.h
|  
* commit 428e61767f71c3622f5b5ecf7655343cdaa698f1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 19 09:02:32 2010 +0000
| 
|     fix a minor memory leak and offs and normalization for start_degree>0
| 
| M	src/libshogun/features/HashedWDFeatures.cpp
| M	src/libshogun/features/WDFeatures.cpp
|  
* commit 3788582fdc617ea913ff15333bbabe3402bbc236
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 19 07:17:50 2010 +0000
| 
|     add hash example
| 
| M	examples/libshogun/Makefile
| A	examples/libshogun/library_hash.cpp
|  
* commit b4dc206f1d61a0831a22f8a621f7142f0ecfc96d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 19 07:09:54 2010 +0000
| 
|     fix off by one counter
| 
| M	src/libshogun/features/HashedWDFeatures.cpp
| M	src/libshogun/features/HashedWDFeatures.h
|  
* commit 839df1f97e11bac2843e997597243fb7949ddd62
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 19 04:33:30 2010 +0000
| 
|     fixes + add debug output
| 
| M	src/libshogun/features/HashedWDFeatures.cpp
| M	src/libshogun/features/HashedWDFeatures.h
|  
* commit 055330de7d661f77777dd79e9220ede20467ac0e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 18 20:59:34 2010 +0000
| 
|     further fixes
| 
| M	src/libshogun/features/HashedWDFeatures.cpp
|  
* commit 5e9afaa07777db21dcaaf867daa00161b1622a12
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 18 20:25:41 2010 +0000
| 
|     fix argument ordering and use start
| 
| M	src/libshogun/features/HashedWDFeatures.cpp
|  
* commit 5e28c5b182d17536b424ad8bcde2587a08bbe25c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 18 15:56:00 2010 +0000
| 
|     implement hashed wd features
| 
| A	src/libshogun/features/HashedWDFeatures.cpp
| A	src/libshogun/features/HashedWDFeatures.h
| M	src/libshogun/lib/Hash.h
| M	src/modular/Features.i
|  
* commit 5d22e84c151060b679b0917d0a3c15f40f0969dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 18 15:49:43 2010 +0000
| 
|     fix typo - murmUr
| 
| M	src/libshogun/lib/Hash.h
|  
* commit c1c6a5f3e78acc2c3703e7c6ab6452105bf39f75
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 16 09:09:16 2010 +0000
| 
|     remove segment loss functions that only appear in headers - fixes compilation
| 
| M	src/libshogun/structure/DynProg.h
|  
* commit 6aa52b586d43b992c2c7402a9ee4207adefab405
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 14 10:17:53 2010 +0000
| 
|     fix typo, update news
| 
| M	src/NEWS
| M	src/libshogun/lib/Trie.h
|  
* commit fe0065ec9bf302fe8dbd56a9e4b78e59ab2e505a
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Jan 11 19:51:01 2010 +0000
| 
|     Hack to get it to work without the missing file(s) in genomic_signals
| 
| D	src/libshogun/genomic_signals/TrainPredMaster.cpp
| A	src/libshogun/genomic_signals/TrainPredMaster.cpp.orig
| D	src/libshogunui/GUISignals.cpp
| A	src/libshogunui/GUISignals.cpp.orig
| M	src/libshogunui/GUISignals.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit c027cbb31c6655bab021c09ae2a24a6ef93e6288
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 11 09:56:18 2010 +0000
| 
|     update for new server
| 
| M	Makefile
| M	doc/pages_cn/ExamplesModularPython.mainpage
|  
* commit 50435f0e673d2f91ed44fb92e1868c38f3e12e6a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 11 09:36:26 2010 +0000
| 
|     fix typos
| 
| M	src/libshogun/classifier/mkl/MKL.h
|  
* commit 06adb349ae1cf38504ce862b809eb3c1aae71cdb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 10 07:26:00 2010 +0000
| 
|     update doc for doxygen 1.6.2
| 
| M	doc/Doxyfile
| M	doc/pages/ExamplesModularPython.mainpage
|  
* commit c4c31723df4915216e72b8f689cca32aa72a9c2c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 10 07:25:29 2010 +0000
| 
|     disable search engine for doxygen 1.6.2 (fixes build failures)
| 
| M	src/modular/Classifier.doxy
| M	src/modular/Clustering.doxy
| M	src/modular/Distance.doxy
| M	src/modular/Distribution.doxy
| M	src/modular/Evaluation.doxy
| M	src/modular/Features.doxy
| M	src/modular/Kernel.doxy
| M	src/modular/Library.doxy
| M	src/modular/PreProc.doxy
| M	src/modular/Regression.doxy
| M	src/modular/Structure.doxy
|  
* commit 4e18e86a1a76336ae73b1b011cfca7ce0b70df91
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Jan 8 13:53:12 2010 +0000
| 
|     -- cleanup
| 
| D	src/libshogun/genomic_signals/KernelParam.cpp
| D	src/libshogun/genomic_signals/KernelParam.h
| M	src/libshogun/genomic_signals/SignalModel.cpp
| M	src/libshogun/genomic_signals/SignalModel.h
| M	src/libshogun/genomic_signals/TrainPredMaster.cpp
| M	src/libshogun/genomic_signals/TrainPredMaster.h
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogunui/GUISignals.cpp
| M	src/libshogunui/GUISignals.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit 7b12d65ccf4309341e11dea8060d1df5ee967d35
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Jan 8 13:49:19 2010 +0000
| 
|     -- rename to avooid confusion with Unix signals
| 
| A	src/libshogun/genomic_signals/KernelParam.cpp
| A	src/libshogun/genomic_signals/KernelParam.h
| A	src/libshogun/genomic_signals/SignalModel.cpp
| A	src/libshogun/genomic_signals/SignalModel.h
| A	src/libshogun/genomic_signals/TrainPredMaster.cpp
| A	src/libshogun/genomic_signals/TrainPredMaster.h
| D	src/libshogun/signals/KernelParam.cpp
| D	src/libshogun/signals/KernelParam.h
| D	src/libshogun/signals/SignalModel.cpp
| D	src/libshogun/signals/SignalModel.h
| D	src/libshogun/signals/TrainPredMaster.cpp
| D	src/libshogun/signals/TrainPredMaster.h
|  
* commit 963479403925b331e562964f0cbfa75ce64ee631
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Jan 8 13:49:17 2010 +0000
| 
|     -- new commands for the SGInterface
| 
| M	src/libshogunui/GUICommands.h
|  
* commit 931f86c57dec1cf9405ab397f9cfcd416ee730fa
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Jan 8 13:49:16 2010 +0000
| 
|     -- first new classes for the signal prediction pipeline
|     
|     Conflicts:
|     
|     	trunk/src/libshogun/signals/TrainPredMaster.cpp
|     	trunk/src/libshogun/signals/TrainPredMaster.h
|     	trunk/src/libshogunui/GUISignals.cpp
|     	trunk/src/libshogunui/GUISignals.h
| 
| A	src/libshogun/signals/KernelParam.cpp
| A	src/libshogun/signals/KernelParam.h
| A	src/libshogun/signals/SignalModel.cpp
| A	src/libshogun/signals/SignalModel.h
| A	src/libshogun/signals/TrainPredMaster.cpp
| A	src/libshogun/signals/TrainPredMaster.h
| A	src/libshogunui/GUISignals.cpp
| A	src/libshogunui/GUISignals.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit 1832dae5642e3f836f05ff69c15d91539e22d87b
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Jan 8 13:49:14 2010 +0000
| 
|     -- more work on memory leaks
| 
| M	src/libshogun/structure/PlifMatrix.cpp
| M	src/libshogunui/GUIStructure.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit 3fa181780eae9eb07c9774dae169324ad868421c
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Jan 8 13:49:10 2010 +0000
| 
|     -- fixed more memory leaks
|     	looks quite good now
| 
| M	src/libshogun/structure/PlifMatrix.cpp
| M	src/libshogun/structure/PlifMatrix.h
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/GUIStructure.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit 6f55863404c7f69f6f530a928512cc10a0a23b6f
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Jan 8 13:49:00 2010 +0000
| 
|     -- fixed some more mem leaks
| 
| M	src/libshogun/structure/PlifMatrix.cpp
| M	src/libshogun/structure/PlifMatrix.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit d32afce446e9d42e458e871d32c0e40436023c27
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Jan 8 10:09:04 2010 +0000
| 
|     Parameterized MTL Kernel Normalizer
| 
| A	src/libshogun/kernel/MultitaskKernelTreeNormalizer.h
|  
* commit 5c36c9ba1a7041715df9829c37ffa972bdd94d93
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Jan 7 15:44:29 2010 +0000
| 
|     (hopefully) fixed a bug in best_path/long transitions
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
|  
* commit e549efa52efef4811746e7cd11abe8be2fb6ce3b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 6 17:00:24 2010 +0000
| 
|     write out floating point scalars to file for cmdline interface
| 
| M	src/cmdline/CmdLineInterface.cpp
|  
* commit bbd37ba6b847ec45cc04c87d6f1ff19d18370b69
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 6 14:53:02 2010 +0000
| 
|     fix name
| 
| M	src/libshogun/kernel/SNPStringKernel.cpp
| M	src/libshogun/kernel/SNPStringKernel.h
|  
* commit 4519e2a57defffbb44b82607a141cf95682cafd3
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Jan 5 15:44:49 2010 +0000
| 
|     reactivated 32bit access operator
| 
| M	src/libshogun/lib/MemoryMappedFile.h
|  
* commit 18ecf8fa63985449ea754245909958a530c49013
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Jan 5 14:34:25 2010 +0000
| 
|     better?
| 
| M	src/libshogun/lib/MemoryMappedFile.h
|  
* commit 1a8ac3c5e4f906b6b093426cb229a30d9412a888
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 30 21:03:39 2009 +0000
| 
|     time limit also for libsvm oneclass/multiclass
| 
| M	src/libshogun/classifier/svm/LibSVMMultiClass.cpp
| M	src/libshogun/classifier/svm/LibSVMOneClass.cpp
|  
* commit 438a7ff1b61dac65357e01dabc8e52205361024c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 30 20:53:44 2009 +0000
| 
|     let libsvm respect max_train_time
| 
| M	src/libshogun/classifier/svm/LibSVM.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.h
|  
* commit b80b7ba0a7f4263104264a080038c6d7a4bbcc9c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 30 10:53:42 2009 +0000
| 
|     fix a bug in static interfaces that could make testing fail when not directly done after training
| 
| M	src/NEWS
| M	src/libshogunui/GUIKernel.cpp
|  
* commit 6fc5c46eff3a0e2ca8ae9dfefddb3c64653eccc7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Dec 27 06:46:15 2009 +0000
| 
|     R compile fixes; however matlab/R won't work until cygwin gets mingw support of gcc4.x
| 
| M	src/configure
|  
* commit ccbb97a5683f5b48f8d957e86cf0c7696fd11026
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Dec 27 05:20:18 2009 +0000
| 
|     further compile fixes for cygwin1.7: works now cleanly for octave,python,python_modular: note upon install issue
|     
|     make install DESTDIR=
|     
|     otherwise installation will fail (cygwin has problems with double '/', i.e. '//' in paths)
| 
| M	src/Makefile.template
| M	src/configure
|  
* commit 0983ae5251c607e8d0ef93c8bc03d5b6cc5ff6ac
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 26 10:52:24 2009 +0000
| 
|     build fixes for win32/cygwin1.7: octave, python & cmdline work now
| 
| M	src/Makefile.template
| M	src/configure
| M	src/octave/OctaveInterface.cpp
|  
* commit 80c9c190dc0cf7f972b571e4efe387ac08670238
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 25 20:24:45 2009 +0000
| 
|     compile fixes for cygwin
| 
| M	src/configure
| M	src/libshogun/base/Version.h
| M	src/libshogun/lib/Mathematics.h
|  
* commit 5c3255fc736de816cff9ee019253ef97045af57a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 25 18:26:40 2009 +0000
| 
|     update copyright to 2010
| 
| M	src/libshogun/base/Version.h
|  
* commit 2b2ed1def6674c1a096149f1bfb88ed0ae01d486
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Sat Dec 12 00:03:32 2009 +0000
| 
|     Added Soerens prettier example.
| 
| M	examples/python_modular/mkl_binclass_modular.py
|  
* commit c2cf6f4e912102832815c3961820025a52f266dd
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Dec 9 08:39:16 2009 +0000
| 
|     -- fixed delete delete[] mismatch
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit 8ef6d87f5b029698d6b38d14d52f19f53ba38a65
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Sun Dec 6 17:42:35 2009 +0000
| 
|     Example of doing two class MKL
| 
| M	examples/python_modular/kernel_combined_custom_poly_modular.py
| A	examples/python_modular/mkl_binclass_modular.py
|  
* commit 1c5d858d4457d7ba31baf6019121bca033f0aa36
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Sun Dec 6 15:56:48 2009 +0000
| 
|     Updated CombinedKernel and CustomKernel example.
| 
| M	examples/python_modular/kernel_combined_custom_poly_modular.py
|  
* commit 80bdec616a3b5f222bff28c644627950dab6fe02
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Fri Dec 4 22:57:02 2009 +0000
| 
|     Behaviour which goes against Soerens advice.
| 
| M	examples/python_modular/kernel_combined_custom_poly_modular.py
|  
* commit eead3397410f031e8d2feb7e11d94a606f541c4e
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Fri Dec 4 20:46:25 2009 +0000
| 
|     Added new example showing mix of custom and shogun kernels.
| 
| A	examples/python_modular/classifier_custom_kernel_modular.py
| D	examples/python_modular/custom_kernel_modular.py
| A	examples/python_modular/kernel_combined_custom_poly_modular.py
|  
* commit a6a9f594cbcf734abbd178bf96e26d830aa3b9ea
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 4 18:21:58 2009 +0000
| 
|     fix compilation of dynprog in python modular (the structure needs to be global
|     		to be recognized by swig)
| 
| M	src/configure
| M	src/libshogun/structure/DynProg.h
|  
* commit 2a26352f55ec4e25adcb18a1c590499388edd57d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 4 18:20:06 2009 +0000
| 
|     potentially fix sign flip occurring with liblinear
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
|  
* commit 358c04bfe4d392509cb4769896f3bdae32cc7de0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 4 11:31:10 2009 +0000
| 
|     formatting changes
| 
| M	src/libshogun/classifier/svm/LibSVM.cpp
|  
* commit 4fe397117d418942e754cbcf72dea86a412531d1
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Dec 2 07:53:52 2009 +0000
| 
|     -- fixed problem with loss that turned up using the mask for alternative regions
| 
| M	src/libshogun/structure/SegmentLoss.h
|  
* commit ad2211cd00813ed5a2092221e65e2aecf240126a
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Dec 2 07:53:49 2009 +0000
| 
|     -- modified semgent loss such that it is similar to
|        the old segment loss used for nGasp
| 
| M	src/libshogun/structure/SegmentLoss.h
|  
* commit e6ce7a492ccc881372fa75f79543dde3bdbbe63d
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Dec 2 07:53:46 2009 +0000
| 
|     -- integrated different versions of dynamic program and loss
|        implementations via ifdefs to compare the different loss types
|        and debug the DynProg
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
|  
* commit 0c3d7a2b5cfdb9e514da3c0247ca5463b74d8636
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 25 07:44:47 2009 +0000
| 
|     fix compile error occuring with octave
| 
| M	src/octave/OctaveInterface.cpp
|  
* commit fdcd4cc8f6cfc5a315483c640e09203629d1f068
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 24 14:40:58 2009 +0000
| 
|     potentially fix custom kernel init problem in static interfaces
| 
| M	src/libshogunui/GUIKernel.cpp
|  
* commit e660247ef132efe34fac9bd903a63baa763e95a4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 24 14:40:26 2009 +0000
| 
|     improve error output when getting vectors
| 
| M	src/octave/OctaveInterface.cpp
|  
* commit c1135c34a8522788b543493529f18ffa87baf64e
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Nov 23 20:26:22 2009 +0000
| 
|     trial to fix matlab interface for matlab R2009a
| 
| M	src/matlab/MatlabInterface.cpp
|  
* commit dadd6b0b6a8b3202c791bb5e61460ba880efe5a2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 20 13:03:26 2009 +0000
| 
|     potentially improve vector shape error message (untested)
| 
| M	src/matlab/MatlabInterface.cpp
|  
* commit ebf21d47c54f43e72413a149b745acbf35406412
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 20 12:53:34 2009 +0000
| 
|     fix cplex detection on amd64 machines
| 
| M	src/configure
|  
* commit 8aff30c5b35468cd86dea9a3676147203584c36e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 19 09:00:58 2009 +0000
| 
|     make SNP kernel LIK like
| 
| M	src/libshogun/kernel/SNPStringKernel.cpp
| M	src/libshogun/kernel/SNPStringKernel.h
|  
* commit 78ed443f8787085083fb223ba6e01aa67a500088
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 19 09:00:35 2009 +0000
| 
|     fix observations...
| 
| M	src/libshogun/distributions/HMM.cpp
|  
* commit b80c6fdbc76ef29fd918452f6cda01e2e7451013
| Author: Elpmis Lee <elpmis.lee@gmail.com>
| Date:   Wed Nov 18 16:31:30 2009 +0000
| 
|     test
| 
| M	doc/pages_cn/Screenshots.mainpage
|  
* commit ca206b4fc5f034e6cbdb0df6fdccbfeb577d7d17
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 17 17:25:17 2009 +0000
| 
|     fixes...
| 
| M	src/libshogun/kernel/SNPStringKernel.cpp
| M	src/libshogun/kernel/SNPStringKernel.h
|  
* commit 2fa216c58b599aa849e978abd0e3943efc05d44b
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Nov 17 13:14:29 2009 +0000
| 
|     -- bugfix: nucleotide loss produced negative results
| 
| M	src/libshogun/structure/SegmentLoss.cpp
|  
* commit 8fff746d7ce57bb7cca337e2d64496ba1b0baa8e
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Nov 17 13:11:55 2009 +0000
| 
|     -- dead code removed
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit 03037796cbd5a81db488cc266fdf038852cb0afc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 16 19:21:03 2009 +0000
| 
|     add SNP kernel
| 
| M	src/NEWS
| A	src/libshogun/kernel/SNPStringKernel.cpp
| A	src/libshogun/kernel/SNPStringKernel.h
| M	src/modular/Kernel.i
|  
* commit c616aa92cad2011d0f90a971089e65903c7635f2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 16 16:45:30 2009 +0000
| 
|     fix set_w() for linear classifiers, thanks to Александр Горбань for the report
| 
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/SubGradientLPM.cpp
| M	src/libshogun/classifier/svm/SVMLin.cpp
| M	src/libshogun/classifier/svm/SubGradientSVM.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit cae6bfa4fba0cdcc21699f5c7f260e47456d3a73
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Nov 16 14:56:46 2009 +0000
| 
|     fixed compilation problem
| 
| M	src/libshogun/classifier/svm/CPLEXSVM.cpp
|  
* commit 3a15f6fadce75b9944c9fcccf3ca9bb16912fd89
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Nov 16 14:54:57 2009 +0000
| 
|     minor change
| 
| M	src/libshogun/kernel/MultitaskKernelNormalizer.h
|  
* commit 57cdc6083c46625c3f40f2c0bea0df50e2977f4b
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Nov 16 14:53:19 2009 +0000
| 
|     working implementation of the MultitaskKernel by means of a KernelNormalizer
| 
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelNormalizer.h
|  
* commit bf8fd116f7c74534b1750ffab4fb28a809991647
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 16 09:52:05 2009 +0000
| 
|     add quotes on update-webpage
| 
| M	Makefile
|  
* commit 12c4f82df8aad27a2ad42cb1cc07d2c6b86682c6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 16 09:36:42 2009 +0000
| 
|     only ci release dir
| 
| M	Makefile
|  
* commit 7d9e0934882fbfa6f55aee859aa39da42d2d1208
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 16 09:35:01 2009 +0000
| 
|     Preparing for new Release shogun_0.9.1
| 
| M	doc/Doxyfile
|  
* commit 745822b46a71b19302a8733cfcc04e69dbc7b755
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 16 09:15:08 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit b138ac25afb3b069acd3363e0e7cb68d3695aba4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 16 09:14:27 2009 +0000
| 
|     - fix type mismatch in larank
|     - fix documentation in stringfeatures
|     - fix compilation of examples upon make check-examples
| 
| M	examples/libshogun/Makefile
| M	src/Makefile.template
| M	src/libshogun/classifier/svm/LaRank.h
| M	src/libshogun/features/StringFeatures.h
|  
* commit 9598d4e8ce746671d6e9924841c48e20ca7ac25c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 16 07:54:56 2009 +0000
| 
|     updated reference documentation
| 
| M	doc/Doxyfile
|  
* commit fa91e1168f6af9a9ee94c339c6c7dbe44585529d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 16 07:45:31 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit faaa74572a12d9c7fa39a028fcaeea06e1070387
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 16 07:44:09 2009 +0000
| 
|     fix a compile failure occuring with the upcoming binutils-gold
|     - workaround quality only though.
| 
| M	examples/libshogun/Makefile
| M	examples/libshogun/README
| M	src/Makefile.template
|  
* commit e391adb20a6cbecef72b95d47b99b03d65d55a7f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 16 07:07:28 2009 +0000
| 
|     update news
| 
| M	src/NEWS
|  
* commit 9235fd4b2631bd09a45f6e94bf64fb84c4d77ecc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 14 06:27:57 2009 +0000
| 
|     use shogun types in LaRank and cleanup / reorder code
| 
| M	src/libshogun/classifier/svm/LaRank.cpp
| M	src/libshogun/classifier/svm/LaRank.h
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/lib/Time.h
|  
* commit 991068c66b811c45a346550c6b91df5eb8bc6521
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Nov 13 16:45:35 2009 +0000
| 
|     moved MultitaskKernel functionality into a kernel normalizer
| 
| A	src/libshogun/kernel/MultitaskKernelNormalizer.h
| M	src/modular/Kernel.i
|  
* commit 667278a556dc05ffb477f829a463592c53c1d974
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 13 16:01:40 2009 +0000
| 
|     remove multitask kernel
| 
| D	src/libshogun/kernel/MultitaskKernel.cpp
| D	src/libshogun/kernel/MultitaskKernel.h
| M	src/modular/Kernel.i
|  
* commit 13424115c5b0861ca658edcbc48c44792b8bb19e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 13 13:11:12 2009 +0000
| 
|     - fix a crasher occurring with MKL and interleaved optimization
|     - fix bug #143 thanks Thomas Fillon for the patch
| 
| M	src/libshogun/classifier/mkl/MKL.cpp
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 20a52a9089e6ac732fd397ba1c83ebe73b69335c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 12 09:56:31 2009 +0000
| 
|     add an example on how to use larank
| 
| M	examples/python_modular/classifier_gmnpsvm_modular.py
| A	examples/python_modular/classifier_larank_modular.py
|  
* commit ea8e389f3660ca4a9c6b8b10945ac8978f5e241e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 12 09:51:54 2009 +0000
| 
|     larank finally seems to work reliably
| 
| M	src/libshogun/classifier/svm/LaRank.cpp
| M	src/libshogun/classifier/svm/LaRank.h
|  
* commit 9f08ba30fd587d6e7c2ba0bf04d834652466ffdb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 12 00:15:34 2009 +0000
| 
|     -don't warn on deprecated functions
|     -get larank to work in most cases
| 
| M	src/configure
| M	src/libshogun/classifier/svm/LaRank.cpp
| M	src/libshogun/classifier/svm/LaRank.h
|  
* commit 803b3d4f9569f0567d15985eda6a7328084606b4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 10 15:09:45 2009 +0000
| 
|     add a function that returns all k-NN solutions for 1...k
| 
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/classifier/KNN.h
| M	src/modular/Classifier.i
|  
* commit b62e0ab41ec1f82c4bf275a252976c8e58c2a6ed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 10 09:05:30 2009 +0000
| 
|     improve get_kernel_matrix progress feedback
| 
| M	src/libshogun/kernel/Kernel.h
|  
* commit ca958b15aa31b0c312cc748b6eaab5f1befe26ee
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 9 23:15:15 2009 +0000
| 
|     some sparse features don't come *sorted* with features in ascending order.
|     introduce sort_features() function to remedy this and call it by default when
|     loading svmlight files
| 
| M	src/libshogun/features/SparseFeatures.h
|  
* commit e689a57fd343e92c8829a71a27c936b6a016acb6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 9 22:37:03 2009 +0000
| 
|     - code beautifications in KNN
|     - in io progress: measure current time not cpu runtime (as this will always stay the same even when more processors are used)
| 
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/lib/io.cpp
| M	src/libshogun/lib/io.h
|  
* commit 253a418faf99d5fcda730d408893f88dc3d2b022
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 9 20:36:57 2009 +0000
| 
|     whitespace cleanups
| 
| M	src/libshogun/classifier/DistanceMachine.cpp
| M	src/libshogun/classifier/DistanceMachine.h
|  
* commit dbb89d6b09753d17746a181bef9946ba016fdf3a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 9 17:30:24 2009 +0000
| 
|     KNN fix crash when labels are not set
| 
| M	src/libshogun/classifier/KNN.cpp
|  
* commit 5242102ded0fad21b6abebab65d716ba1c457299
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 9 16:23:22 2009 +0000
| 
|     fix a number of warnings
| 
| M	src/libshogun/classifier/svm/LaRank.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/features/StringFileFeatures.h
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogun/lib/io.h
| M	src/libshogun/preproc/DecompressString.h
|  
* commit e949c64cbcf4360bf4d75af95905e8dde85e01c4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 9 09:29:32 2009 +0000
| 
|     fix two memory leaks
| 
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/modular/Classifier.i
|  
* commit ca261f22704c0bdc4c5a1d869c40ed0add77d441
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 8 19:01:32 2009 +0000
| 
|     spelling fix explicitly
| 
| M	src/libshogun/kernel/Kernel.h
|  
* commit 1617a327febba8149ee7215c196e2942140bb0ef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 8 18:59:35 2009 +0000
| 
|     fix a few spelling mistakes as pointed out by lintian
| 
| M	src/libshogun/distributions/LinearHMM.h
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/CombinedFeatures.h
| M	src/libshogun/features/Features.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
| M	src/libshogun/structure/Plif.h
| M	src/python_modular/swig_typemaps.i
|  
* commit d961e269fcd1148b43da212233241a37881e9890
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 8 00:49:18 2009 +0000
| 
|     add convenience constructor for custom kernel
| 
| M	src/libshogun/kernel/CustomKernel.cpp
| M	src/libshogun/kernel/CustomKernel.h
|  
* commit 3d91c1b039881ca5bc603866bb19f2c9a6a53f7a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 7 19:09:19 2009 +0000
| 
|     erase also cn docu
| 
| M	Makefile
|  
* commit 29308c956bf5ce88d5e02479a44258b2eb88897d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 7 17:47:53 2009 +0000
| 
|     add english spelling fixes as suggested by Elpmis
| 
| M	doc/insert_examples.py
| M	doc/pages/ExamplesStaticOctave.mainpage
| M	doc/pages/ExamplesStaticPython.mainpage
|  
* commit f739bb82bffc1a554f8ba5928d4328fa6e4d6e36
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 7 17:39:47 2009 +0000
| 
|     add updated chinese examples from Elpmis Lee, make doc_cn now generates examples + short docu header in Chinese too
| 
| M	doc/Makefile
| A	doc/insert_examples_cn.py
| M	doc/pages_cn/Documentation.mainpage
| M	doc/pages_cn/ExamplesLibshogun.mainpage
| M	doc/pages_cn/ExamplesModularOctave.mainpage
| M	doc/pages_cn/ExamplesModularPython.mainpage
| M	doc/pages_cn/ExamplesModularR.mainpage
| M	doc/pages_cn/ExamplesStaticCmdline.mainpage
| M	doc/pages_cn/ExamplesStaticOctave.mainpage
| M	doc/pages_cn/ExamplesStaticPython.mainpage
| M	doc/pages_cn/ExamplesStaticR.mainpage
| M	doc/pages_cn/FAQ.mainpage
| M	doc/pages_cn/ModularTutorial.mainpage
|  
* commit d30d0e3195085298e3c6f086355349d02cc70c69
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 7 08:23:30 2009 +0000
| 
|     include chinese documentation on make update-webpage and update news and contributors
| 
| M	Makefile
| M	src/CONTRIBUTIONS
| M	src/NEWS
|  
* commit 0241383ad2e47a5de44828737c4e91d3d73a8cca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 7 07:56:51 2009 +0000
| 
|     don't yet insert examples for chinese
| 
| M	doc/Makefile
| M	doc/insert_examples.py
| M	doc/pages/ExamplesModularPython.mainpage
|  
* commit 91862e9d41c24dbc7506c19ea55df9031a917c9f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 7 07:13:17 2009 +0000
| 
|     rename target doc-cn: -> doc_cn:
| 
| M	doc/Makefile
|  
* commit e6fb5c542f56d6c89b4ff56fe89220212a9f8ef5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 7 07:10:32 2009 +0000
| 
|     add chinese documentation (translated by Elpmis Lee)
| 
| A	doc/Doxyfile_cn
| M	doc/Makefile
| M	doc/insert_examples.py
| A	doc/pages_cn/Authors.mainpage
| A	doc/pages_cn/DeveloperTutorial.mainpage
| A	doc/pages_cn/Documentation.mainpage
| A	doc/pages_cn/EierlegendeWollmilchSauInterface.mainpage
| A	doc/pages_cn/Examples.mainpage
| A	doc/pages_cn/ExamplesLibshogun.mainpage
| A	doc/pages_cn/ExamplesModularOctave.mainpage
| A	doc/pages_cn/ExamplesModularPython.mainpage
| A	doc/pages_cn/ExamplesModularR.mainpage
| A	doc/pages_cn/ExamplesStaticCmdline.mainpage
| A	doc/pages_cn/ExamplesStaticOctave.mainpage
| A	doc/pages_cn/ExamplesStaticPython.mainpage
| A	doc/pages_cn/ExamplesStaticR.mainpage
| A	doc/pages_cn/FAQ.mainpage
| A	doc/pages_cn/Installation.mainpage
| A	doc/pages_cn/Interfaces.mainpage
| A	doc/pages_cn/License.mainpage
| A	doc/pages_cn/Methods.mainpage
| A	doc/pages_cn/ModularInterfaces.mainpage
| A	doc/pages_cn/ModularTutorial.mainpage
| A	doc/pages_cn/Screenshots.mainpage
| A	doc/pages_cn/StaticCommandLineInterface.mainpage
| A	doc/pages_cn/StaticInterfaces.mainpage
| A	doc/pages_cn/StaticOctaveInterface.mainpage
| A	doc/pages_cn/StaticPythonInterface.mainpage
| A	doc/pages_cn/StaticRInterface.mainpage
| A	doc/pages_cn/StaticTutorial.mainpage
| A	doc/pages_cn/Tutorial.mainpage
| A	doc/pages_cn/developerreadme.mainpage
| A	doc/pages_cn/shogun_footer.html
| A	doc/pages_cn/soname.mainpage
|  
* commit fea070acd9e9f601dc66b70a9d10430813057f71
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 6 23:39:45 2009 +0000
| 
|     compute matrix in a parallel way upon get_kernel_matrix()
| 
| M	src/libshogun/kernel/Kernel.h
|  
* commit dffa15f941893c842548cb0bd417cd3ab4607642
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Nov 6 18:15:03 2009 +0000
| 
|     added has_features()
| 
| M	src/libshogun/kernel/MultitaskKernel.cpp
| M	src/libshogun/kernel/MultitaskKernel.h
|  
* commit 043318780876eb527235be85a6b79c37937b843f
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Nov 6 17:31:36 2009 +0000
| 
|     added get_kernel_type
| 
| M	src/libshogun/kernel/MultitaskKernel.h
|  
* commit f1ed0bf27bb9835a0e8e70a92be77374e3f93925
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Nov 6 17:28:11 2009 +0000
| 
|     added get_feature_type, get_feature_class
| 
| M	src/libshogun/kernel/MultitaskKernel.cpp
| M	src/libshogun/kernel/MultitaskKernel.h
|  
* commit 5324c2594f4e013517b86aee6387fd32d824c390
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Nov 6 17:05:18 2009 +0000
| 
|     added missing include
| 
| M	src/libshogun/kernel/MultitaskKernel.cpp
| M	src/libshogun/kernel/MultitaskKernel.h
|  
* commit f755ec70b6334cf4f4f131ff01210e172b9c0b83
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 6 17:03:55 2009 +0000
| 
|     use ASSERT instead of assert
| 
| M	src/libshogun/kernel/MultitaskKernel.cpp
| M	src/libshogun/kernel/MultitaskKernel.h
|  
* commit dd61117f143843150921871d42bd73fd8f79b705
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Nov 6 16:54:31 2009 +0000
| 
|     added MultitaskKernel
| 
| A	src/libshogun/kernel/MultitaskKernel.cpp
| A	src/libshogun/kernel/MultitaskKernel.h
|  
* commit 17f71ec258d1b08d0be525ae51822b271b694c12
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Nov 6 16:53:51 2009 +0000
| 
|     added swig interface for MultitaskKernel
| 
| M	src/modular/Kernel.i
|  
* commit 1d946a4528cdefdcfea7f61ca484e6fdfaa73638
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Nov 6 15:05:03 2009 +0000
| 
|     removed redundant -lshogun flag
| 
| M	examples/libshogun/Makefile
|  
* commit 18c36c2e9206b44055bda17d3536db5e0a24c3ea
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Nov 6 14:56:42 2009 +0000
| 
|     enhanced makefile, explained how to compile the examples if shogun is installed in a users home dir
| 
| M	examples/libshogun/Makefile
| A	examples/libshogun/README
|  
* commit 90a005d4c26fb777ef6e14b5de2760465f010214
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 6 12:46:46 2009 +0000
| 
|     simplify kernel computation, proper progress and cancel
| 
| M	src/libshogun/kernel/Kernel.h
|  
* commit 2a74d43bc1276044b031128addc86a4ee2cc0350
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 6 11:17:20 2009 +0000
| 
|     potentially more correct svr fix :)
| 
| M	src/libshogun/kernel/Kernel.cpp
|  
* commit fa24f608ac641a1a515fdc2e0d2e579237b50a7b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 6 11:02:29 2009 +0000
| 
|     - modify io functions: using obj.io.enable_file_and_line() it is now possible to
|     prefix all of shogun's output with filename and line number (where the printing
|     takes place). this allows for better tracing of where an error actually occured
|     - fix problem with svr light + kernel access
| 
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/lib/io.cpp
| M	src/libshogun/lib/io.h
| M	src/libshogun/regression/svr/SVR_light.cpp
|  
* commit 3716a8618593c17c6a6227e2588dc8fcd16e1979
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 6 09:11:40 2009 +0000
| 
|     - remove get_kernel_matrix_{real,shortreal} and get_kernel_matrix() code duplication
|     and use a template function instead, adjust callers accordingly
|     - fix combined kernel init w/ svmlight
|     - call make clean in libshogun examples on check-examples and always use
|     $(MAKE) to get things work on non-gnumake systems
| 
| M	src/Makefile
| M	src/Makefile.template
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CustomKernel.cpp
| M	src/libshogun/kernel/CustomKernel.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/regression/KRR.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit 591e8f6df8c92d431ddfd2cb4c29f1ec77de0b04
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 5 14:40:59 2009 +0000
| 
|     forgot to add decompress preproc
| 
| A	src/libshogun/preproc/DecompressString.h
|  
* commit 25983755f277db3ade72432f37d715c4c1419741
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 5 14:38:57 2009 +0000
| 
|     - hopefully really fix combined/custom kernel num_vec_lhs etc
|     - add example on how to use compression features of all kinds
|     - add decompression preproc
|     - fix preproc processing in string features: now preprocs are allowed to return
|     strings of arbitrary length. This requires to always return copies of the
|     (processed) string / caching is currently not implemented.
|     - change get_string_features and typemap accordingly: strings are now copied
|     first within libshogun and then again to python etc: while this results in
|     memory overhead (1 string is always duplicated), it works correcly with
|     preprocessors.
|     - update NEWS
| 
| A	examples/python_modular/features_string_char_compressed_modular.py
| M	src/NEWS
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/StringFileFeatures.h
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/lib/Compressor.cpp
| M	src/libshogun/lib/Compressor.h
| M	src/libshogun/preproc/PreProc.h
| M	src/libshogun/preproc/SortUlongString.h
| M	src/libshogunui/GUIPreProc.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/PreProc.i
| M	src/python_modular/swig_typemaps.i
| M	testsuite/matlab_and_octave/test_all.sh
|  
* commit 2a06e9a75a135e77fe8ef6ab452b5e24901d24f3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 5 00:40:52 2009 +0000
| 
|     range check no loner necessary (is taken care of in CKernel)
| 
| M	src/libshogun/kernel/CustomKernel.h
|  
* commit b44ec9c5851221a5717ee11c01fd637f8fd82f2e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 5 00:37:30 2009 +0000
| 
|     intrusive change to get combined kernels with only custom kernels to work in svr
| 
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/SVM_light.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 1a9a1f970d9831a3ab156b1244897aa6709acd0a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 4 23:34:16 2009 +0000
| 
|     fix a few init problems with combined/custom kernel
| 
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/kernel/CustomKernel.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 6a70278fb1bad2161b20dea1f538c652c3f3155c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 4 13:53:36 2009 +0000
| 
|     (de)compression works now for other compressors too
| 
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/Compressor.cpp
|  
* commit 99fd6ba05ef22719bec36fe0c1839772e1c20a6f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 4 13:52:23 2009 +0000
| 
|     really fix python 2.6 / 2.5 paths
| 
| M	src/configure
|  
* commit b5e090f7d8ba37af8178c9525faaa61fa1338aba
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 4 10:23:16 2009 +0000
| 
|     fail when any of the modular interfaces is enabled but swig is not found or too old
| 
| M	src/configure
|  
* commit 6880db17c3ba9ae78c6d8e723076004799515994
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 4 09:07:01 2009 +0000
| 
|     add python 2.6 and cplex 12 detection
| 
| M	src/configure
|  
* commit 98451260ec870f64e0b4c0164cfc794290048355
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 4 02:14:03 2009 +0000
| 
|     add load_compressed/save_compressed  - seems to work ok for UNCOMPRESSED, LZO, GZIP
| 
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/Compressor.cpp
| M	src/libshogun/lib/Compressor.h
| M	src/modular/Library.i
|  
* commit dae0d8f9a901471c8fccc4212bfe9fb65b2d0e47
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 3 22:44:55 2009 +0000
| 
|     add save_compressed and load_compressed functions to features
| 
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/Compressor.cpp
| M	src/libshogun/lib/Compressor.h
| M	src/libshogun/lib/Signal.h
|  
* commit e636b1d4b0c13d1b6fcd40eb7738baa2bdb77fca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 3 19:07:33 2009 +0000
| 
|     don't init kernel when no features are available (assume kernel does not need
|     		to be inited)
| 
| M	src/libshogunui/GUIKernel.cpp
|  
* commit ddb19c18bd33e704946b44d25bbd61b4669b5a0f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 3 12:16:14 2009 +0000
| 
|     add compression code + docu for gzip, bzip2, lzo and lzma
| 
| A	src/libshogun/lib/Compressor.cpp
| M	src/libshogun/lib/Compressor.h
|  
* commit 02e4ba86ec4f8668cab0204c82aa6b3eb75db054
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 3 07:10:49 2009 +0000
| 
|     fix compilation in static interfaces and add lzma detection / partial support
| 
| M	src/configure
| M	src/libshogun/lib/Compressor.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit 6bf65f3a6c446ac8d02ff6ec161ad3ec1528b73b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 2 23:41:36 2009 +0000
| 
|     add lzo/gzip/bzip2 compression / decompression support
| 
| M	src/configure
| A	src/libshogun/lib/Compressor.h
|  
* commit 9e1eede5ca0b7fe488d17fca6c40aa1b671ecb7b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 2 21:59:49 2009 +0000
| 
|     add preproc functionality to string features
| 
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
|  
* commit d32caa040e4527cc9580b7022a27e54f0b12dced
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 2 12:05:43 2009 +0000
| 
|     - add free argument to string features' get_feature_vector.
|     - configure detection of ultra fast lzo (de-)compression
| 
| M	src/NEWS
| M	src/configure
| M	src/libshogun/classifier/PluginEstimate.cpp
| M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| M	src/libshogun/classifier/svm/WDSVMOcas.h
| M	src/libshogun/distance/CanberraWordDistance.cpp
| M	src/libshogun/distance/HammingWordDistance.cpp
| M	src/libshogun/distance/ManhattanWordDistance.cpp
| M	src/libshogun/distributions/HMM.cpp
| M	src/libshogun/distributions/HMM.h
| M	src/libshogun/distributions/Histogram.cpp
| M	src/libshogun/distributions/LinearHMM.cpp
| M	src/libshogun/features/ExplicitSpecFeatures.cpp
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/WDFeatures.cpp
| M	src/libshogun/kernel/CommUlongStringKernel.cpp
| M	src/libshogun/kernel/CommWordStringKernel.cpp
| M	src/libshogun/kernel/FixedDegreeStringKernel.cpp
| M	src/libshogun/kernel/HistogramWordStringKernel.cpp
| M	src/libshogun/kernel/LinearStringKernel.cpp
| M	src/libshogun/kernel/LocalAlignmentStringKernel.cpp
| M	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/MatchWordStringKernel.cpp
| M	src/libshogun/kernel/OligoStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchWordStringKernel.cpp
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
| M	src/libshogun/kernel/SalzbergWordStringKernel.cpp
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/WeightedCommWordStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/preproc/SortUlongString.cpp
| M	src/libshogun/preproc/SortWordString.cpp
|  
* commit eefb6b25ff3350678f6047ec1370442d6b2abf1d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 2 07:02:28 2009 +0000
| 
|     a little larank progess: now starts and crashes
| 
| M	src/libshogun/classifier/svm/LaRank.cpp
| M	src/libshogun/classifier/svm/LaRank.h
| M	src/libshogun/kernel/Kernel.cpp
|  
* commit 295272848785f8f02659705909fbc94c63f078de
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 31 21:41:22 2009 +0000
| 
|     fix a crasher when invalid chars occur in the file
| 
| M	src/libshogun/features/StringFileFeatures.h
|  
* commit a72851a4c20e05d834f1335ba69cefd206e2ad3e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 31 18:51:58 2009 +0000
| 
|     add StringFileFeatures (file based memory mapped string features)
| 
| A	examples/python_modular/features_string_file_char_modular.py
| M	src/NEWS
| M	src/libshogun/features/StringFeatures.cpp
| M	src/libshogun/features/StringFeatures.h
| A	src/libshogun/features/StringFileFeatures.h
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/lib/MemoryMappedFile.h
| M	src/modular/Features.i
|  
* commit a5563f75c5c7acdfe21a4b90001ca1478ff94797
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 30 06:56:14 2009 +0000
| 
|     fix compilation of modular interfaces by moving (at least temporarily) laranks kcache into larank
| 
| M	src/libshogun/classifier/svm/LaRank.cpp
| M	src/libshogun/classifier/svm/LaRank.h
| D	src/libshogun/classifier/svm/kcache.cpp
| D	src/libshogun/classifier/svm/kcache.h
|  
* commit 9f4ddb7c068d74218a820ed34fbd0b1ac936c059
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 30 06:41:26 2009 +0000
| 
|     enable testing for one class mkl, thanks gorden jemwa
| 
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 669fbc9038ebc99c4382c43a4ed216c374585d4b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 27 13:42:44 2009 +0000
| 
|     fill in x86_32 and fail when cplex is forefully enabled but not found
| 
| M	src/configure
|  
* commit 9f8e1a97ea0cf70d16a053fcf7908c06ec2a3598
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 26 05:26:34 2009 +0000
| 
|     integrate fast (one-pass) multiclass svm (LaRank) - only compiles for now
| 
| M	src/libshogun/classifier/Classifier.h
| A	src/libshogun/classifier/svm/LaRank.cpp
| A	src/libshogun/classifier/svm/LaRank.h
| A	src/libshogun/classifier/svm/kcache.cpp
| A	src/libshogun/classifier/svm/kcache.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/Classifier.i
|  
* commit 36db32d0209dc323018537b92a8c3dac82024049
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 25 21:40:01 2009 +0000
| 
|     let octave not write history on configure
| 
| M	src/configure
|  
* commit 0249429dfb82c853e81c865b637b5e78c2dbc7cf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 13:39:30 2009 +0000
| 
|     now really prepare for the future :)
| 
| M	src/NEWS
|  
* commit 88026b26649d0079373357f66b1f086b4b89a3ca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 12:47:12 2009 +0000
| 
|     path was right / make relase is done in releases/...
| 
| M	Makefile
|  
* commit 24729861dd26994726bea260aafcb1445650b05f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 12:41:11 2009 +0000
| 
|     Preparing for new Release shogun_0.9.0
| 
| M	Makefile
| M	doc/Doxyfile
|  
* commit 1df5fc46ca12dae221ade5074b55b414543735b7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 12:40:56 2009 +0000
| 
|     revert news
| 
| M	src/NEWS
|  
* commit 2fc1b6fed25f6cab9ee4e0b85e6347104ccea44c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 12:19:23 2009 +0000
| 
|     update news for things to come
| 
| M	src/NEWS
|  
* commit 6a0e227e8ab91ea825fb9d8c7c5b05db34057594
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 11:33:33 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 3ab6a82049d87754ab942d9b609f833c23102ca6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 11:18:32 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 74e22fef554f2f972e3016f7bba65e264a54460e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 11:08:04 2009 +0000
| 
|     remove a static allocation and replace with new/delete
| 
| M	src/libshogun/kernel/PyramidChi2.cpp
|  
* commit 703c69b8df6c422630b622ad16548b1b8dc3d630
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Fri Oct 23 10:10:51 2009 +0000
| 
|     refurbished PyrmidChi2 kernel
| 
| M	src/libshogun/kernel/PyramidChi2.cpp
| M	src/libshogun/kernel/PyramidChi2.h
|  
* commit efef43cb590f38dfbfd948c155f12f50d3153bca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 09:48:35 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 547326c2934cc0b092da3849416a1b1bbdac6bfa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 09:44:24 2009 +0000
| 
|     get mkl_pseudo_dna example to run again
| 
| M	examples/matlab_and_octave/graphical/mkl_pseudo_dna.m
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogunui/GUIKernel.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit 5e926b9a1350cfaf12e128179765118806555d7d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 06:20:36 2009 +0000
| 
|     update NEWS and README and add minor debug code to stringfeatures
| 
| M	src/NEWS
| M	src/README
| M	src/libshogun/features/StringFeatures.h
|  
* commit 809958b592b73d790f3e7b727fb5572053ded4be
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 06:17:51 2009 +0000
| 
|     minor improvements on tutorial
| 
| M	doc/pages/ModularTutorial.mainpage
|  
* commit 0bd09b830ed8a36e39f8588c5fd5a3ef20773b6e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 06:06:42 2009 +0000
| 
|     document missing parameter and rename member variable base_alphas to m_base_alphas
| 
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
| M	src/libshogun/classifier/svm/GMNPSVM.h
|  
* commit b80f25c601222b5879107f33b91bf6ffcf8158f9
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Oct 23 01:27:21 2009 +0000
| 
|     modified code for serialization support
| 
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/KernelMachine.h
|  
* commit 16d87edeb7f1576c3e676e45f955462828201c67
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Oct 23 01:26:28 2009 +0000
| 
|     got minimal serialization example working for the Gaussian kernel. doesn't work yet for most applications
| 
| M	examples/python_modular/serialization_svmlight_modular.py
|  
* commit 0b6708ba0d20085fdc6c0aa331634f376e4b818f
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Oct 23 01:25:17 2009 +0000
| 
|     minor adjustments
| 
| M	examples/python_modular/classifier_domainadaptationsvm_modular.py
|  
* commit aa60238e0e7a5c842e0e881e971e1c2254643920
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Oct 23 00:33:34 2009 +0000
| 
|     minor change
| 
| M	src/libshogun/classifier/Classifier.h
|  
* commit c58d8717c882cd43d0a507bfba724660acb8d847
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Oct 23 00:24:48 2009 +0000
| 
|     added default constructors to some kernels to enable boost serialization. Works now for Gaussian kernel.
| 
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| A	src/libshogun/kernel/SimpleKernel.cpp
| M	src/libshogun/kernel/SimpleKernel.h
|  
* commit 7733ec80700c6abb64902eb3bd73440b378f731d
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 22 23:58:27 2009 +0000
| 
|     enabled serialization support for simple features by registering class
| 
| A	src/libshogun/features/SimpleFeatures.cpp
|  
* commit cba2467b24c96fc25d239a4689149fdd27759ac3
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 22 23:34:05 2009 +0000
| 
|     rewritten considerable parts of the modular tutorial, updated example to include toy data, added small evaluation section
| 
| M	doc/pages/ModularTutorial.mainpage
|  
* commit 78eee7c0433a9c9dcc130d62cb775fa5d9e6aee0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 22 17:43:09 2009 +0000
| 
|     incorporate vojtechs comments
| 
| M	doc/pages/ExamplesModularOctave.mainpage
| M	doc/pages/ExamplesModularPython.mainpage
| M	doc/pages/StaticInterfaces.mainpage
| M	doc/pages/StaticTutorial.mainpage
|  
* commit 14f6ee1feacc4cfdae1db665abc3f1619af88e07
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 22 17:28:32 2009 +0000
| 
|     wdk now deserializes
| 
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
|  
* commit 399d161c015d42a636dcfdeee27f611910260119
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 22 17:10:38 2009 +0000
| 
|     fixed typo
| 
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
|  
* commit dd23fb5410cc409d647a053507a40fd621ab5637
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 22 16:58:08 2009 +0000
| 
|     not saving lhs/rhs in base class atm
| 
| M	src/libshogun/kernel/Kernel.h
|  
* commit b343660bcef101fc9e10e54e97f5d31f6e5f1bd8
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 22 16:56:29 2009 +0000
| 
|     adjusted load/save_construct_data to namespaces
| 
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
|  
* commit bfeef60dff825ea508a49130ee78dd34e23139fc
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 22 16:56:02 2009 +0000
| 
|     adjusted load/save_construct_data to namespaces
| 
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
|  
* commit d21b10f206895bd5d175b16a6e8d9c0fca96e200
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 22 15:27:19 2009 +0000
| 
|     polish example a bit
| 
| M	examples/python_modular/classifier_domainadaptationsvm_modular.py
|  
* commit fc529d6788ff523a76a753fab6864c591e461206
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Thu Oct 22 15:19:33 2009 +0000
| 
|     minor bugs fixed.
| 
| M	examples/matlab_and_octave/graphical/cluster_hierarchical.m
| M	examples/matlab_and_octave/graphical/local_alignment_kernel.m
|  
* commit d61280bab8ac90e965dcf4d52fb5dfb2acea0565
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 22 15:18:10 2009 +0000
| 
|     fix DA svm
| 
| M	examples/octave_modular/classifier_domainadaptationsvm_modular.m
|  
* commit 83ea7709a5e99cf7a46587e584d9fcf03fa19d56
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 22 13:31:32 2009 +0000
| 
|     added octave example for DASVM
| 
| A	examples/octave_modular/classifier_domainadaptationsvm_modular.m
|  
* commit 190532e127fb5f39e74d9108545145cec5d2419f
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 22 13:30:49 2009 +0000
| 
|     fixed typo
| 
| M	examples/python_modular/classifier_domainadaptationsvm_modular.py
|  
* commit 564e3fc70ad91fa7c0b36d051841297f97e1309e
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 22 11:56:56 2009 +0000
| 
|     created example for DomainAdaptationSVM
| 
| A	examples/python_modular/classifier_domainadaptationsvm_modular.py
|  
* commit c25076df1a33e2a8dde7acaeb4b03aae159571a1
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Oct 22 10:02:55 2009 +0000
| 
|     -- example python mod is running now
| 
| D	examples/data/DynProg_example_py.dat
| A	examples/data/DynProg_example_py.dat.mat
| M	examples/python_modular/structure_dynprog_modular.py
|  
* commit 4ebdb6c9a587f99c000c0d6e9a84ab8055c6a626
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 22 03:28:48 2009 +0000
| 
|     remove note on how this example is compiled
| 
| M	examples/libshogun/classifier_mklmulticlass.cpp
|  
* commit 98dfa3f91141c7f9b0cf39fc9835b67ed192f511
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 21 18:23:17 2009 +0000
| 
|     incorporate sebastians change requests
| 
| M	doc/pages/Authors.mainpage
| M	doc/pages/ExamplesModularPython.mainpage
| M	doc/pages/ExamplesStaticOctave.mainpage
| M	doc/pages/FAQ.mainpage
| M	doc/pages/Methods.mainpage
|  
* commit ac619c2a8413480d22f1ee873a89df9f88e0571b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 21 18:12:39 2009 +0000
| 
|     rename also matlab example
| 
| D	examples/matlab_and_octave/dynprog.m
| A	examples/matlab_and_octave/structure_dynprog.m
|  
* commit 0c29d797b464df05c2f5520bac36fb41b2600a94
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 21 18:12:09 2009 +0000
| 
|     rename dynprog example to match naming conventions
| 
| D	examples/python_modular/dynprog.py
| A	examples/python_modular/structure_dynprog_modular.py
|  
* commit 36d65dd299fe9bf5ae5d965ba4f72cdb4047983d
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Oct 21 17:50:52 2009 +0000
| 
|     -- fixed typo
| 
| M	src/INSTALL
|  
* commit 9819b1ee493fa2ae0c4b12374cc057f6ed6fc225
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Oct 21 17:50:49 2009 +0000
| 
|     - python modular example for DynProg added
| 
| A	examples/data/DynProg_example_py.dat
| A	examples/python_modular/dynprog.py
|  
* commit bd219b658bb6567c6f6af310dbf5d02992c15cd6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 21 17:28:00 2009 +0000
| 
|     fix a bug in file (wrong cast of int64 to int)
| 
| M	src/libshogun/lib/SimpleFile.h
|  
* commit 68754c4cf26f1a39f3b6599b835e5b81e5055cdc
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Wed Oct 21 16:36:09 2009 +0000
| 
|     moved MKLMulticlass2glpk.{h,cpp} to MKLMultiClassGLPK.{h.cpp} and updated dependencies
| 
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
| D	src/libshogun/classifier/mkl/MKLMultiClass2glpk.cpp
| D	src/libshogun/classifier/mkl/MKLMultiClass2glpk.h
| A	src/libshogun/classifier/mkl/MKLMultiClassGLPK.cpp
| A	src/libshogun/classifier/mkl/MKLMultiClassGLPK.h
|  
* commit 75d171e18465e98da4012b8e1dd626df6582f081
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 21 15:49:52 2009 +0000
| 
|     mention doxygen 1.6.0 as requirement for docs
| 
| M	src/INSTALL
|  
* commit 8731fdbfb89389b5d9784a23a304d23d87d20555
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 21 15:48:12 2009 +0000
| 
|     test for doxygen version 1.6.0 or higher
| 
| M	src/configure
|  
* commit 43ad9d6a4ae6a3c158ab4ef9863ef8089d6fea61
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 21 15:19:00 2009 +0000
| 
|     move code to disable verbose glpk output into MKLMultiClass2glpkg.cpp
| 
| M	src/NEWS
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass2glpk.cpp
|  
* commit 483e384c0da24e0f7078fa1698c257a9db425054
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Wed Oct 21 14:54:08 2009 +0000
| 
|     updated documentation
| 
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
| M	src/libshogun/classifier/mkl/MKLMultiClass2glpk.h
| M	src/libshogun/classifier/svm/GMNPSVM.h
|  
* commit e4897ac70804aeb57d6929ecee5062d671770a17
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 21 12:42:38 2009 +0000
| 
|     document how to load strings from file or fasta file
| 
| M	examples/python_modular/features_string_file_modular.py
|  
* commit 438d045964ce3389c9588ec1c55b972970642b36
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Oct 21 10:10:20 2009 +0000
| 
|     -- example for dynprog
| 
| A	examples/data/DynProg_example.dat
| A	examples/matlab_and_octave/dynprog.m
|  
* commit 767ba8b30dd7503a32ab765ca1ddfaa82e8d31fd
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Oct 21 10:10:12 2009 +0000
| 
|     -- more comments
| 
| M	src/libshogun/structure/DynProg.h
|  
* commit d902c2dce1e4030c29bdb642c508d8fe8e3e11ec
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Tue Oct 20 16:54:21 2009 +0000
| 
|     added retrain after serialization
| 
| M	examples/python_modular/serialization_svmlight_modular.py
|  
* commit fdf4c2f43e0c5444b32e5376aaaf8bf4f4256a4f
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Tue Oct 20 16:42:59 2009 +0000
| 
|     std_string now mapped correctly (again)
| 
| M	src/modular/SGBase.i
|  
* commit 85c190ac7e20ebdfd2e7fb073c5c6da0022d6cba
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 20 16:13:06 2009 +0000
| 
|     enable pythoncode only with python
| 
| M	src/modular/SGBase.i
|  
* commit f2e2e046120271942bebebf06b8aa69fd7045bb2
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Tue Oct 20 15:37:40 2009 +0000
| 
|     some modifications to get shogun to compile with serialization enabled
| 
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/svm/LibSVM.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
|  
* commit 3ed2c56498ab2ad1105cfd368b3e981042efb7a3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 20 14:53:39 2009 +0000
| 
|     fix a couple of issues with serialization
| 
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/StringFeatures.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/lib/common.h
|  
* commit 46fe4e7256e34f62b13f6a37d332fce0ccafc9eb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 20 14:27:04 2009 +0000
| 
|     use global namespace for boost
| 
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.h
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVM.h
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/SVM_light.h
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/RealFileFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/SimpleKernel.h
| M	src/libshogun/kernel/StringKernel.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
| M	src/libshogun/lib/common.h
|  
* commit 7b0530aa83029cb62081b6aafdbfa1c343093176
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Tue Oct 20 14:09:04 2009 +0000
| 
|     changes to seralization respecting namespaces
| 
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/common.h
|  
* commit 7999e4621f9b3dcbb42cc729dbcf9d693b34fdd8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 20 14:08:52 2009 +0000
| 
|     document align
| 
| M	src/libshogun/features/SimpleFeatures.h
|  
* commit 12963322354483aca727a76178feaff496f72c6b
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Tue Oct 20 12:16:59 2009 +0000
| 
|     made example settings the same
| 
| M	examples/cmdline/mkl_multiclass.sg
| M	examples/matlab_and_octave/mkl_multiclass.m
| M	examples/octave_modular/mkl_multiclass_modular.m
| M	examples/r/mkl_multiclass.R
| M	examples/r_modular/mkl_multiclass_modular.R
|  
* commit 4c8beb167f6648c57dd86ca9251ed4d5a13f579c
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Tue Oct 20 12:11:25 2009 +0000
| 
|     now both examples have same settings and give the same result
| 
| M	examples/python/mkl_multiclass.py
| M	examples/python_modular/mkl_multiclass_modular.py
|  
* commit 46674ca474ee12c54f9d7a0ee8376c1d084413a7
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Tue Oct 20 11:59:36 2009 +0000
| 
|     changed KMeans to handle all distances with feature type F_DREAL:
|     D_BRAYCURTIS, D_CANBERRA, D_CHEBYSHEW, D_CHISQUARE, D_COSINE,
|     D_EUCLIDIAN, D_GEODESIC, D_JENSEN, D_MANHATTAN, D_MINKOWSKI,
|     D_SPARSEEUCLIDIAN,D_TANIMOTO
| 
| M	src/libshogun/clustering/KMeans.cpp
|  
* commit 200e25afdaaf602442efe2749e8d7490da627165
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Tue Oct 20 11:44:50 2009 +0000
| 
|     changed method name in DistanceMachine
| 
| M	src/libshogun/classifier/DistanceMachine.cpp
| M	src/libshogun/classifier/DistanceMachine.h
| M	src/libshogun/classifier/KNN.cpp
|  
* commit 1b79bafa6756ac94f042bde2a96379bfd99bca87
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 20 11:25:43 2009 +0000
| 
|     don't document all structures
| 
| M	src/libshogun/lib/Hash.h
| M	src/libshogun/structure/DynProg.h
| M	src/libshogun/structure/PlifMatrix.h
|  
* commit 1a4abd9f327692214112b2cc9d361485258943dc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 20 11:11:05 2009 +0000
| 
|     rename modular examples to have a modular suffix (to allow for includes ...)
| 
| M	doc/pages/DeveloperTutorial.mainpage
| M	doc/pages/ExamplesModularOctave.mainpage
| M	doc/pages/ExamplesModularPython.mainpage
| M	doc/pages/ExamplesModularR.mainpage
| M	doc/pages/ModularTutorial.mainpage
| D	examples/octave_modular/classifier_gmnpsvm.m
| A	examples/octave_modular/classifier_gmnpsvm_modular.m
| D	examples/octave_modular/classifier_gpbtsvm.m
| A	examples/octave_modular/classifier_gpbtsvm_modular.m
| D	examples/octave_modular/classifier_knn.m
| A	examples/octave_modular/classifier_knn_modular.m
| D	examples/octave_modular/classifier_lda.m
| A	examples/octave_modular/classifier_lda_modular.m
| D	examples/octave_modular/classifier_liblinear.m
| A	examples/octave_modular/classifier_liblinear_modular.m
| D	examples/octave_modular/classifier_libsvm.m
| D	examples/octave_modular/classifier_libsvm_minimal.m
| A	examples/octave_modular/classifier_libsvm_minimal_modular.m
| A	examples/octave_modular/classifier_libsvm_modular.m
| D	examples/octave_modular/classifier_libsvmmulticlass.m
| A	examples/octave_modular/classifier_libsvmmulticlass_modular.m
| D	examples/octave_modular/classifier_libsvmoneclass.m
| A	examples/octave_modular/classifier_libsvmoneclass_modular.m
| D	examples/octave_modular/classifier_mpdsvm.m
| A	examples/octave_modular/classifier_mpdsvm_modular.m
| D	examples/octave_modular/classifier_perceptron.m
| A	examples/octave_modular/classifier_perceptron_modular.m
| D	examples/octave_modular/classifier_subgradientsvm.m
| A	examples/octave_modular/classifier_subgradientsvm_modular.m
| D	examples/octave_modular/classifier_svmlight.m
| A	examples/octave_modular/classifier_svmlight_modular.m
| D	examples/octave_modular/classifier_svmlin.m
| A	examples/octave_modular/classifier_svmlin_modular.m
| D	examples/octave_modular/classifier_svmocas.m
| A	examples/octave_modular/classifier_svmocas_modular.m
| D	examples/octave_modular/classifier_svmsgd.m
| A	examples/octave_modular/classifier_svmsgd_modular.m
| D	examples/octave_modular/clustering_hierarchical.m
| A	examples/octave_modular/clustering_hierarchical_modular.m
| D	examples/octave_modular/clustering_kmeans.m
| A	examples/octave_modular/clustering_kmeans_modular.m
| D	examples/octave_modular/distance_braycurtis.m
| A	examples/octave_modular/distance_braycurtis_modular.m
| D	examples/octave_modular/distance_canberra.m
| A	examples/octave_modular/distance_canberra_modular.m
| D	examples/octave_modular/distance_canberraword.m
| A	examples/octave_modular/distance_canberraword_modular.m
| D	examples/octave_modular/distance_chebyshew.m
| A	examples/octave_modular/distance_chebyshew_modular.m
| D	examples/octave_modular/distance_chisquare.m
| A	examples/octave_modular/distance_chisquare_modular.m
| D	examples/octave_modular/distance_cosine.m
| A	examples/octave_modular/distance_cosine_modular.m
| D	examples/octave_modular/distance_euclidian.m
| A	examples/octave_modular/distance_euclidian_modular.m
| D	examples/octave_modular/distance_geodesic.m
| A	examples/octave_modular/distance_geodesic_modular.m
| D	examples/octave_modular/distance_hammingword.m
| A	examples/octave_modular/distance_hammingword_modular.m
| D	examples/octave_modular/distance_jensen.m
| A	examples/octave_modular/distance_jensen_modular.m
| D	examples/octave_modular/distance_manhatten.m
| A	examples/octave_modular/distance_manhatten_modular.m
| D	examples/octave_modular/distance_manhattenword.m
| A	examples/octave_modular/distance_manhattenword_modular.m
| D	examples/octave_modular/distance_minkowski.m
| A	examples/octave_modular/distance_minkowski_modular.m
| D	examples/octave_modular/distance_sparseeuclidian.m
| A	examples/octave_modular/distance_sparseeuclidian_modular.m
| D	examples/octave_modular/distance_tanimoto.m
| A	examples/octave_modular/distance_tanimoto_modular.m
| D	examples/octave_modular/distribution_histogram.m
| A	examples/octave_modular/distribution_histogram_modular.m
| D	examples/octave_modular/distribution_hmm.m
| A	examples/octave_modular/distribution_hmm_modular.m
| D	examples/octave_modular/distribution_linearhmm.m
| A	examples/octave_modular/distribution_linearhmm_modular.m
| D	examples/octave_modular/kernel_auc.m
| A	examples/octave_modular/kernel_auc_modular.m
| D	examples/octave_modular/kernel_chi2.m
| A	examples/octave_modular/kernel_chi2_modular.m
| D	examples/octave_modular/kernel_combined.m
| A	examples/octave_modular/kernel_combined_modular.m
| D	examples/octave_modular/kernel_commulongstring.m
| A	examples/octave_modular/kernel_commulongstring_modular.m
| D	examples/octave_modular/kernel_commwordstring.m
| A	examples/octave_modular/kernel_commwordstring_modular.m
| D	examples/octave_modular/kernel_const.m
| A	examples/octave_modular/kernel_const_modular.m
| D	examples/octave_modular/kernel_custom.m
| A	examples/octave_modular/kernel_custom_modular.m
| D	examples/octave_modular/kernel_diag.m
| A	examples/octave_modular/kernel_diag_modular.m
| D	examples/octave_modular/kernel_distance.m
| A	examples/octave_modular/kernel_distance_modular.m
| D	examples/octave_modular/kernel_fixeddegreestring.m
| A	examples/octave_modular/kernel_fixeddegreestring_modular.m
| D	examples/octave_modular/kernel_gaussian.m
| A	examples/octave_modular/kernel_gaussian_modular.m
| D	examples/octave_modular/kernel_gaussianshift.m
| A	examples/octave_modular/kernel_gaussianshift_modular.m
| D	examples/octave_modular/kernel_histogram.m
| A	examples/octave_modular/kernel_histogram_modular.m
| D	examples/octave_modular/kernel_linear.m
| A	examples/octave_modular/kernel_linear_modular.m
| D	examples/octave_modular/kernel_linearbyte.m
| A	examples/octave_modular/kernel_linearbyte_modular.m
| D	examples/octave_modular/kernel_linearstring.m
| A	examples/octave_modular/kernel_linearstring_modular.m
| D	examples/octave_modular/kernel_linearword.m
| A	examples/octave_modular/kernel_linearword_modular.m
| D	examples/octave_modular/kernel_localalignmentstring.m
| A	examples/octave_modular/kernel_localalignmentstring_modular.m
| D	examples/octave_modular/kernel_localityimprovedstring.m
| A	examples/octave_modular/kernel_localityimprovedstring_modular.m
| D	examples/octave_modular/kernel_matchwordstring.m
| A	examples/octave_modular/kernel_matchwordstring_modular.m
| D	examples/octave_modular/kernel_oligostring.m
| A	examples/octave_modular/kernel_oligostring_modular.m
| D	examples/octave_modular/kernel_poly.m
| A	examples/octave_modular/kernel_poly_modular.m
| D	examples/octave_modular/kernel_polymatchstring.m
| A	examples/octave_modular/kernel_polymatchstring_modular.m
| D	examples/octave_modular/kernel_polymatchwordstring.m
| A	examples/octave_modular/kernel_polymatchwordstring_modular.m
| D	examples/octave_modular/kernel_sigmoid.m
| A	examples/octave_modular/kernel_sigmoid_modular.m
| D	examples/octave_modular/kernel_simplelocalityimprovedstring.m
| A	examples/octave_modular/kernel_simplelocalityimprovedstring_modular.m
| D	examples/octave_modular/kernel_sparsegaussian.m
| A	examples/octave_modular/kernel_sparsegaussian_modular.m
| D	examples/octave_modular/kernel_sparselinear.m
| A	examples/octave_modular/kernel_sparselinear_modular.m
| D	examples/octave_modular/kernel_sparsepoly.m
| A	examples/octave_modular/kernel_sparsepoly_modular.m
| D	examples/octave_modular/kernel_top.m
| A	examples/octave_modular/kernel_top_modular.m
| D	examples/octave_modular/kernel_weightedcommwordstring.m
| A	examples/octave_modular/kernel_weightedcommwordstring_modular.m
| D	examples/octave_modular/kernel_weighteddegreepositionstring.m
| A	examples/octave_modular/kernel_weighteddegreepositionstring_modular.m
| D	examples/octave_modular/kernel_weighteddegreestring.m
| A	examples/octave_modular/kernel_weighteddegreestring_modular.m
| D	examples/octave_modular/mkl_multiclass.m
| A	examples/octave_modular/mkl_multiclass_modular.m
| D	examples/octave_modular/preproc_commulongstring.m
| A	examples/octave_modular/preproc_commulongstring_modular.m
| D	examples/octave_modular/preproc_commwordstring.m
| A	examples/octave_modular/preproc_commwordstring_modular.m
| D	examples/octave_modular/preproc_logplusone.m
| A	examples/octave_modular/preproc_logplusone_modular.m
| D	examples/octave_modular/preproc_normone.m
| A	examples/octave_modular/preproc_normone_modular.m
| D	examples/octave_modular/preproc_prunevarsubmean.m
| A	examples/octave_modular/preproc_prunevarsubmean_modular.m
| D	examples/octave_modular/regression_krr.m
| A	examples/octave_modular/regression_krr_modular.m
| D	examples/octave_modular/regression_libsvr.m
| A	examples/octave_modular/regression_libsvr_modular.m
| D	examples/octave_modular/regression_svrlight.m
| A	examples/octave_modular/regression_svrlight_modular.m
| D	examples/python_modular/classifier_gmnpsvm.py
| A	examples/python_modular/classifier_gmnpsvm_modular.py
| D	examples/python_modular/classifier_gpbtsvm.py
| A	examples/python_modular/classifier_gpbtsvm_modular.py
| D	examples/python_modular/classifier_knn.py
| A	examples/python_modular/classifier_knn_modular.py
| D	examples/python_modular/classifier_lda.py
| A	examples/python_modular/classifier_lda_modular.py
| D	examples/python_modular/classifier_liblinear.py
| A	examples/python_modular/classifier_liblinear_modular.py
| D	examples/python_modular/classifier_libsvm.py
| D	examples/python_modular/classifier_libsvm_minimal.py
| A	examples/python_modular/classifier_libsvm_minimal_modular.py
| A	examples/python_modular/classifier_libsvm_modular.py
| D	examples/python_modular/classifier_libsvmmulticlass.py
| A	examples/python_modular/classifier_libsvmmulticlass_modular.py
| D	examples/python_modular/classifier_libsvmoneclass.py
| A	examples/python_modular/classifier_libsvmoneclass_modular.py
| D	examples/python_modular/classifier_mpdsvm.py
| A	examples/python_modular/classifier_mpdsvm_modular.py
| D	examples/python_modular/classifier_perceptron.py
| A	examples/python_modular/classifier_perceptron_modular.py
| D	examples/python_modular/classifier_subgradientsvm.py
| A	examples/python_modular/classifier_subgradientsvm_modular.py
| D	examples/python_modular/classifier_svmlight.py
| D	examples/python_modular/classifier_svmlight_batch_linadd.py
| A	examples/python_modular/classifier_svmlight_batch_linadd_modular.py
| D	examples/python_modular/classifier_svmlight_linear_term.py
| A	examples/python_modular/classifier_svmlight_linear_term_modular.py
| A	examples/python_modular/classifier_svmlight_modular.py
| D	examples/python_modular/classifier_svmlin.py
| A	examples/python_modular/classifier_svmlin_modular.py
| D	examples/python_modular/classifier_svmocas.py
| A	examples/python_modular/classifier_svmocas_modular.py
| D	examples/python_modular/classifier_svmsgd.py
| A	examples/python_modular/classifier_svmsgd_modular.py
| D	examples/python_modular/clustering_hierarchical.py
| A	examples/python_modular/clustering_hierarchical_modular.py
| D	examples/python_modular/clustering_kmeans.py
| A	examples/python_modular/clustering_kmeans_modular.py
| D	examples/python_modular/custom_kernel.py
| A	examples/python_modular/custom_kernel_modular.py
| D	examples/python_modular/distance_braycurtis.py
| A	examples/python_modular/distance_braycurtis_modular.py
| D	examples/python_modular/distance_canberra.py
| A	examples/python_modular/distance_canberra_modular.py
| D	examples/python_modular/distance_canberraword.py
| A	examples/python_modular/distance_canberraword_modular.py
| D	examples/python_modular/distance_chebyshew.py
| A	examples/python_modular/distance_chebyshew_modular.py
| D	examples/python_modular/distance_chisquare.py
| A	examples/python_modular/distance_chisquare_modular.py
| D	examples/python_modular/distance_cosine.py
| A	examples/python_modular/distance_cosine_modular.py
| D	examples/python_modular/distance_euclidian.py
| A	examples/python_modular/distance_euclidian_modular.py
| D	examples/python_modular/distance_geodesic.py
| A	examples/python_modular/distance_geodesic_modular.py
| D	examples/python_modular/distance_hammingword.py
| A	examples/python_modular/distance_hammingword_modular.py
| D	examples/python_modular/distance_jensen.py
| A	examples/python_modular/distance_jensen_modular.py
| D	examples/python_modular/distance_manhatten.py
| A	examples/python_modular/distance_manhatten_modular.py
| D	examples/python_modular/distance_manhattenword.py
| A	examples/python_modular/distance_manhattenword_modular.py
| D	examples/python_modular/distance_minkowski.py
| A	examples/python_modular/distance_minkowski_modular.py
| D	examples/python_modular/distance_normsquared.py
| A	examples/python_modular/distance_normsquared_modular.py
| D	examples/python_modular/distance_sparseeuclidean.py
| A	examples/python_modular/distance_sparseeuclidean_modular.py
| D	examples/python_modular/distance_tanimoto.py
| A	examples/python_modular/distance_tanimoto_modular.py
| D	examples/python_modular/distribution_histogram.py
| A	examples/python_modular/distribution_histogram_modular.py
| D	examples/python_modular/distribution_hmm.py
| A	examples/python_modular/distribution_hmm_modular.py
| D	examples/python_modular/distribution_linear_hmm.py
| A	examples/python_modular/distribution_linear_hmm_modular.py
| D	examples/python_modular/features_read_svmlight_format.py
| A	examples/python_modular/features_read_svmlight_format_modular.py
| D	examples/python_modular/features_simple.py
| D	examples/python_modular/features_simple_byte.py
| A	examples/python_modular/features_simple_byte_modular.py
| D	examples/python_modular/features_simple_longint.py
| A	examples/python_modular/features_simple_longint_modular.py
| A	examples/python_modular/features_simple_modular.py
| D	examples/python_modular/features_simple_real.py
| A	examples/python_modular/features_simple_real_modular.py
| D	examples/python_modular/features_sparse.py
| A	examples/python_modular/features_sparse_modular.py
| D	examples/python_modular/features_string_char.py
| A	examples/python_modular/features_string_char_modular.py
| D	examples/python_modular/features_string_file.py
| A	examples/python_modular/features_string_file_modular.py
| D	examples/python_modular/features_string_sliding_window.py
| A	examples/python_modular/features_string_sliding_window_modular.py
| D	examples/python_modular/features_string_ulong.py
| A	examples/python_modular/features_string_ulong_modular.py
| D	examples/python_modular/features_string_word.py
| A	examples/python_modular/features_string_word_modular.py
| D	examples/python_modular/kernel_auc.py
| A	examples/python_modular/kernel_auc_modular.py
| D	examples/python_modular/kernel_chi2.py
| A	examples/python_modular/kernel_chi2_modular.py
| D	examples/python_modular/kernel_combined.py
| A	examples/python_modular/kernel_combined_modular.py
| D	examples/python_modular/kernel_comm_ulong_string.py
| A	examples/python_modular/kernel_comm_ulong_string_modular.py
| D	examples/python_modular/kernel_comm_word_string.py
| A	examples/python_modular/kernel_comm_word_string_modular.py
| D	examples/python_modular/kernel_const.py
| A	examples/python_modular/kernel_const_modular.py
| D	examples/python_modular/kernel_custom.py
| A	examples/python_modular/kernel_custom_modular.py
| D	examples/python_modular/kernel_diag.py
| A	examples/python_modular/kernel_diag_modular.py
| D	examples/python_modular/kernel_distance.py
| A	examples/python_modular/kernel_distance_modular.py
| D	examples/python_modular/kernel_fisher.py
| A	examples/python_modular/kernel_fisher_modular.py
| D	examples/python_modular/kernel_fixed_degree_string.py
| A	examples/python_modular/kernel_fixed_degree_string_modular.py
| D	examples/python_modular/kernel_gaussian.py
| A	examples/python_modular/kernel_gaussian_modular.py
| D	examples/python_modular/kernel_gaussian_shift.py
| A	examples/python_modular/kernel_gaussian_shift_modular.py
| D	examples/python_modular/kernel_histogram_word_string.py
| A	examples/python_modular/kernel_histogram_word_string_modular.py
| D	examples/python_modular/kernel_linear.py
| D	examples/python_modular/kernel_linear_byte.py
| A	examples/python_modular/kernel_linear_byte_modular.py
| A	examples/python_modular/kernel_linear_modular.py
| D	examples/python_modular/kernel_linear_string.py
| A	examples/python_modular/kernel_linear_string_modular.py
| D	examples/python_modular/kernel_linear_word.py
| A	examples/python_modular/kernel_linear_word_modular.py
| D	examples/python_modular/kernel_local_alignment_string.py
| A	examples/python_modular/kernel_local_alignment_string_modular.py
| D	examples/python_modular/kernel_locality_improved_string.py
| A	examples/python_modular/kernel_locality_improved_string_modular.py
| D	examples/python_modular/kernel_match_word_string.py
| A	examples/python_modular/kernel_match_word_string_modular.py
| D	examples/python_modular/kernel_oligo_string.py
| A	examples/python_modular/kernel_oligo_string_modular.py
| D	examples/python_modular/kernel_poly.py
| D	examples/python_modular/kernel_poly_match_string.py
| A	examples/python_modular/kernel_poly_match_string_modular.py
| D	examples/python_modular/kernel_poly_match_word_string.py
| A	examples/python_modular/kernel_poly_match_word_string_modular.py
| A	examples/python_modular/kernel_poly_modular.py
| D	examples/python_modular/kernel_salzberg_word_string.py
| A	examples/python_modular/kernel_salzberg_word_string_modular.py
| D	examples/python_modular/kernel_sigmoid.py
| A	examples/python_modular/kernel_sigmoid_modular.py
| D	examples/python_modular/kernel_simple_locality_improved_string.py
| A	examples/python_modular/kernel_simple_locality_improved_string_modular.py
| D	examples/python_modular/kernel_sparse_gaussian.py
| A	examples/python_modular/kernel_sparse_gaussian_modular.py
| D	examples/python_modular/kernel_sparse_linear.py
| A	examples/python_modular/kernel_sparse_linear_modular.py
| D	examples/python_modular/kernel_sparse_poly.py
| A	examples/python_modular/kernel_sparse_poly_modular.py
| D	examples/python_modular/kernel_top.py
| A	examples/python_modular/kernel_top_modular.py
| D	examples/python_modular/kernel_weighted_comm_word_string.py
| A	examples/python_modular/kernel_weighted_comm_word_string_modular.py
| D	examples/python_modular/kernel_weighted_degree_position_string.py
| A	examples/python_modular/kernel_weighted_degree_position_string_modular.py
| D	examples/python_modular/kernel_weighted_degree_string.py
| A	examples/python_modular/kernel_weighted_degree_string_modular.py
| D	examples/python_modular/mkl_multiclass.py
| A	examples/python_modular/mkl_multiclass_modular.py
| D	examples/python_modular/preproc_logplusone.py
| A	examples/python_modular/preproc_logplusone_modular.py
| D	examples/python_modular/preproc_normone.py
| A	examples/python_modular/preproc_normone_modular.py
| D	examples/python_modular/preproc_prunevarsubmean.py
| A	examples/python_modular/preproc_prunevarsubmean_modular.py
| D	examples/python_modular/preproc_sortulongstring.py
| A	examples/python_modular/preproc_sortulongstring_modular.py
| D	examples/python_modular/preproc_sortwordstring.py
| A	examples/python_modular/preproc_sortwordstring_modular.py
| D	examples/python_modular/regression_krr.py
| A	examples/python_modular/regression_krr_modular.py
| D	examples/python_modular/regression_libsvr.py
| A	examples/python_modular/regression_libsvr_modular.py
| D	examples/python_modular/regression_svrlight.py
| A	examples/python_modular/regression_svrlight_modular.py
| D	examples/python_modular/serialization_svmlight.py
| A	examples/python_modular/serialization_svmlight_modular.py
| D	examples/python_modular/tests_check_commwordkernel_memleak.py
| A	examples/python_modular/tests_check_commwordkernel_memleak_modular.py
| D	examples/r_modular/classifier_gmnpsvm.R
| A	examples/r_modular/classifier_gmnpsvm_modular.R
| D	examples/r_modular/classifier_gpbtsvm.R
| A	examples/r_modular/classifier_gpbtsvm_modular.R
| D	examples/r_modular/classifier_knn.R
| A	examples/r_modular/classifier_knn_modular.R
| D	examples/r_modular/classifier_lda.R
| A	examples/r_modular/classifier_lda_modular.R
| D	examples/r_modular/classifier_liblinear.R
| A	examples/r_modular/classifier_liblinear_modular.R
| D	examples/r_modular/classifier_libsvm.R
| A	examples/r_modular/classifier_libsvm_modular.R
| D	examples/r_modular/classifier_libsvmmulticlass.R
| A	examples/r_modular/classifier_libsvmmulticlass_modular.R
| D	examples/r_modular/classifier_libsvmoneclass.R
| A	examples/r_modular/classifier_libsvmoneclass_modular.R
| D	examples/r_modular/classifier_mpdsvm.R
| A	examples/r_modular/classifier_mpdsvm_modular.R
| D	examples/r_modular/classifier_perceptron.R
| A	examples/r_modular/classifier_perceptron_modular.R
| D	examples/r_modular/classifier_subgradientsvm.R
| A	examples/r_modular/classifier_subgradientsvm_modular.R
| D	examples/r_modular/classifier_svmlight.R
| A	examples/r_modular/classifier_svmlight_modular.R
| D	examples/r_modular/classifier_svmlin.R
| A	examples/r_modular/classifier_svmlin_modular.R
| D	examples/r_modular/classifier_svmocas.R
| A	examples/r_modular/classifier_svmocas_modular.R
| D	examples/r_modular/classifier_svmsgd.R
| A	examples/r_modular/classifier_svmsgd_modular.R
| D	examples/r_modular/distribution_histogram.R
| A	examples/r_modular/distribution_histogram_modular.R
| D	examples/r_modular/distribution_hmm.R
| A	examples/r_modular/distribution_hmm_modular.R
| D	examples/r_modular/distribution_linearhmm.R
| A	examples/r_modular/distribution_linearhmm_modular.R
| D	examples/r_modular/kernel_auc.R
| A	examples/r_modular/kernel_auc_modular.R
| D	examples/r_modular/kernel_chi2.R
| A	examples/r_modular/kernel_chi2_modular.R
| D	examples/r_modular/kernel_combined.R
| A	examples/r_modular/kernel_combined_modular.R
| D	examples/r_modular/kernel_commulongstring.R
| A	examples/r_modular/kernel_commulongstring_modular.R
| D	examples/r_modular/kernel_commwordstring.R
| A	examples/r_modular/kernel_commwordstring_modular.R
| D	examples/r_modular/kernel_const.R
| A	examples/r_modular/kernel_const_modular.R
| D	examples/r_modular/kernel_custom.R
| A	examples/r_modular/kernel_custom_modular.R
| D	examples/r_modular/kernel_diag.R
| A	examples/r_modular/kernel_diag_modular.R
| D	examples/r_modular/kernel_distancetokernel.R
| A	examples/r_modular/kernel_distancetokernel_modular.R
| D	examples/r_modular/kernel_fixeddegreestring.R
| A	examples/r_modular/kernel_fixeddegreestring_modular.R
| D	examples/r_modular/kernel_gaussian.R
| A	examples/r_modular/kernel_gaussian_modular.R
| D	examples/r_modular/kernel_gaussianshift.R
| A	examples/r_modular/kernel_gaussianshift_modular.R
| D	examples/r_modular/kernel_histogramword.R
| A	examples/r_modular/kernel_histogramword_modular.R
| D	examples/r_modular/kernel_linear.R
| A	examples/r_modular/kernel_linear_modular.R
| D	examples/r_modular/kernel_linearbyte.R
| A	examples/r_modular/kernel_linearbyte_modular.R
| D	examples/r_modular/kernel_linearstring.R
| A	examples/r_modular/kernel_linearstring_modular.R
| D	examples/r_modular/kernel_linearword.R
| A	examples/r_modular/kernel_linearword_modular.R
| D	examples/r_modular/kernel_localalignmentstring.R
| A	examples/r_modular/kernel_localalignmentstring_modular.R
| D	examples/r_modular/kernel_localityimprovedstring.R
| A	examples/r_modular/kernel_localityimprovedstring_modular.R
| D	examples/r_modular/kernel_oligostring.R
| A	examples/r_modular/kernel_oligostring_modular.R
| D	examples/r_modular/kernel_poly.R
| A	examples/r_modular/kernel_poly_modular.R
| D	examples/r_modular/kernel_polymatchstring.R
| A	examples/r_modular/kernel_polymatchstring_modular.R
| D	examples/r_modular/kernel_polymatchword.R
| A	examples/r_modular/kernel_polymatchword_modular.R
| D	examples/r_modular/kernel_sigmoid.R
| A	examples/r_modular/kernel_sigmoid_modular.R
| D	examples/r_modular/kernel_simplelocalityimprovedstring.R
| A	examples/r_modular/kernel_simplelocalityimprovedstring_modular.R
| D	examples/r_modular/kernel_sparsegaussian.R
| A	examples/r_modular/kernel_sparsegaussian_modular.R
| D	examples/r_modular/kernel_sparselinear.R
| A	examples/r_modular/kernel_sparselinear_modular.R
| D	examples/r_modular/kernel_sparsepoly.R
| A	examples/r_modular/kernel_sparsepoly_modular.R
| D	examples/r_modular/kernel_topfisher.R
| A	examples/r_modular/kernel_topfisher_modular.R
| D	examples/r_modular/kernel_weightedcommwordstring.R
| A	examples/r_modular/kernel_weightedcommwordstring_modular.R
| D	examples/r_modular/kernel_weighteddegreepositionstring.R
| A	examples/r_modular/kernel_weighteddegreepositionstring_modular.R
| D	examples/r_modular/kernel_weighteddegreestring.R
| A	examples/r_modular/kernel_weighteddegreestring_modular.R
| D	examples/r_modular/kernel_wordmatch.R
| A	examples/r_modular/kernel_wordmatch_modular.R
| D	examples/r_modular/mkl_multiclass.R
| A	examples/r_modular/mkl_multiclass_modular.R
| D	examples/r_modular/preproc_commulongstring.R
| A	examples/r_modular/preproc_commulongstring_modular.R
| D	examples/r_modular/preproc_commwordstring.R
| A	examples/r_modular/preproc_commwordstring_modular.R
| D	examples/r_modular/preproc_logplusone.R
| A	examples/r_modular/preproc_logplusone_modular.R
| D	examples/r_modular/preproc_normone.R
| A	examples/r_modular/preproc_normone_modular.R
| D	examples/r_modular/preproc_prunevarsubmean.R
| A	examples/r_modular/preproc_prunevarsubmean_modular.R
|  
* commit 6ec41ddee54d18ac65db24f5a67eb1fd8d5a7959
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 20 09:40:50 2009 +0000
| 
|     rename examples in libshogun and include them in doc
| 
| M	doc/Doxyfile
| M	doc/DoxygenLayout.xml
| M	doc/insert_examples.py
| M	doc/pages/Examples.mainpage
| A	doc/pages/ExamplesLibshogun.mainpage
| M	doc/pages/ModularTutorial.mainpage
| M	doc/pages/Screenshots.mainpage
| M	doc/pages/Tutorial.mainpage
| M	examples/libshogun/Makefile
| A	examples/libshogun/basic_minimal.cpp
| A	examples/libshogun/classifier_libsvm.cpp
| A	examples/libshogun/classifier_minimal_svm.cpp
| A	examples/libshogun/classifier_mklmulticlass.cpp
| D	examples/libshogun/dyn_int.cpp
| D	examples/libshogun/gc_array.cpp
| D	examples/libshogun/indirect_object.cpp
| A	examples/libshogun/kernel_gaussian.cpp
| A	examples/libshogun/kernel_revlin.cpp
| A	examples/libshogun/library_dyn_int.cpp
| A	examples/libshogun/library_gc_array.cpp
| A	examples/libshogun/library_indirect_object.cpp
| D	examples/libshogun/minimal.cpp
| D	examples/libshogun/minimal_svm.cpp
| D	examples/libshogun/mklmulticlass.cpp
| D	examples/libshogun/rbf_kernel.cpp
| D	examples/libshogun/rbf_svm.cpp
| D	examples/libshogun/revlin_kernel.cpp
|  
* commit 2c473f2c321b6adb4ea0f2d62a6028021db7004f
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Tue Oct 20 09:11:12 2009 +0000
| 
|     changed examples slightly
| 
| M	examples/python/mkl_multiclass.py
| M	examples/python_modular/mkl_multiclass.py
|  
* commit f3b105e9d516de3b355b220ce0a74a0d9964d667
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 20 08:53:24 2009 +0000
| 
|     generate webpages with examples
| 
| M	doc/Makefile
| A	doc/insert_examples.py
| M	doc/pages/Examples.mainpage
| A	doc/pages/ExamplesModularOctave.mainpage
| A	doc/pages/ExamplesModularPython.mainpage
| A	doc/pages/ExamplesModularR.mainpage
| M	doc/pages/ExamplesStaticCmdline.mainpage
| A	doc/pages/ExamplesStaticOctave.mainpage
| A	doc/pages/ExamplesStaticPython.mainpage
| A	doc/pages/ExamplesStaticR.mainpage
| M	doc/pages/ModularTutorial.mainpage
| M	doc/pages/StaticTutorial.mainpage
| M	examples/cmdline/classifier_libsvm.sg
| D	examples/cmdline/libsvm.sg
| A	examples/octave_modular/classifier_libsvm_minimal.m
| D	examples/octave_modular/libsvm.m
| A	examples/python/mkl_regression.py
| A	examples/python/mkl_twoclass.py
| D	examples/python/test_mkl.py
| D	examples/python_modular/check_commwordkernel_memleak.py
| A	examples/python_modular/classifier_libsvm_minimal.py
| A	examples/python_modular/features_read_svmlight_format.py
| M	examples/python_modular/features_simple.py
| D	examples/python_modular/libsvm.py
| D	examples/python_modular/numpy_commands.py
| D	examples/python_modular/read_svmlight_format.py
| A	examples/python_modular/tests_check_commwordkernel_memleak.py
| M	src/configure
| M	src/libshogunui/GUIClassifier.cpp
| M	src/matlab/MatlabInterface.cpp
|  
* commit ddf6a29d582a21a16e1c3a6879536fbff42fdc23
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Mon Oct 19 23:10:06 2009 +0000
| 
|     changed computation of distance values
| 
| M	src/libshogun/classifier/KNN.cpp
|  
* commit deef249a1b2fbd1ed397c921e1a364f959ffbe87
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Mon Oct 19 22:57:11 2009 +0000
| 
|     added distances method (pthread)
| 
| M	src/libshogun/classifier/DistanceMachine.cpp
| M	src/libshogun/classifier/DistanceMachine.h
|  
* commit da1cdb40c15ff28d9fdf07de853635191102d95c
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Mon Oct 19 22:45:11 2009 +0000
| 
|     added replace_rhs method to temporary replace rhs
| 
| M	src/libshogun/distance/Distance.cpp
| M	src/libshogun/distance/Distance.h
|  
* commit f4686b42560d672932f1a754287a522822223221
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Oct 19 18:34:34 2009 +0000
| 
|     initialized pv and C to avoid problem with multiclass svm
| 
| M	src/libshogun/classifier/svm/LibSVM.cpp
| M	src/libshogun/classifier/svm/LibSVMMultiClass.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.h
|  
* commit 9a67cbebfe64a74adc483473d31b2830cb28e2cc
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Mon Oct 19 14:46:05 2009 +0000
| 
|     changed third kernel from Chi2Kernel to PolyKernel now python example works
| 
| M	examples/octave_modular/mkl_multiclass.m
| M	examples/python_modular/mkl_multiclass.py
| M	examples/r_modular/mkl_multiclass.R
|  
* commit 43a56b562da93c9b7f16f92e4b17e7890010db0a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 19 13:51:08 2009 +0000
| 
|     example online help
| 
| A	doc/pages/Examples.mainpage
| A	doc/pages/ExamplesStaticCmdline.mainpage
|  
* commit f8c4ffbd5a140c9a5032e34cbe28f1d0746b337f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 19 13:45:58 2009 +0000
| 
|     updated example
| 
| M	doc/pages/Documentation.mainpage
| M	examples/octave_modular/mkl_multiclass.m
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogun/lib/DynInt.h
|  
* commit 3054a0ceeef17f80ed39d4e1cf3c6b1a5dba2f3a
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Mon Oct 19 10:43:47 2009 +0000
| 
|     this example crashes
| 
| M	examples/python_modular/mkl_multiclass.py
|  
* commit 0d2a5bc2ac70cb4ff1489ade2689ce23d2c7046f
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Mon Oct 19 10:30:49 2009 +0000
| 
|     python nonmodular example works
| 
| M	examples/python/mkl_multiclass.py
|  
* commit 34aef1c960b009cea54a9bfa79ac5dfa8ab87cef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 19 05:37:24 2009 +0000
| 
|     - move HMM.h etc into distributions
|     - comment log_derivative computation to speed up running of examples
|     - fix sparse features, now everything (except multicalss svm) works again in
|     all interfaces
|     - update news
| 
| M	README
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
| M	examples/octave_modular/distribution_histogram.m
| M	examples/python_modular/distribution_histogram.py
| M	src/NEWS
| M	src/libshogun/classifier/PluginEstimate.cpp
| M	src/libshogun/classifier/PluginEstimate.h
| A	src/libshogun/distributions/GHMM.cpp
| A	src/libshogun/distributions/GHMM.h
| A	src/libshogun/distributions/HMM.cpp
| A	src/libshogun/distributions/HMM.h
| A	src/libshogun/distributions/Histogram.cpp
| A	src/libshogun/distributions/Histogram.h
| A	src/libshogun/distributions/LinearHMM.cpp
| A	src/libshogun/distributions/LinearHMM.h
| D	src/libshogun/distributions/histogram/Histogram.cpp
| D	src/libshogun/distributions/histogram/Histogram.h
| D	src/libshogun/distributions/hmm/GHMM.cpp
| D	src/libshogun/distributions/hmm/GHMM.h
| D	src/libshogun/distributions/hmm/HMM.cpp
| D	src/libshogun/distributions/hmm/HMM.h
| D	src/libshogun/distributions/hmm/LinearHMM.cpp
| D	src/libshogun/distributions/hmm/LinearHMM.h
| M	src/libshogun/features/FKFeatures.h
| M	src/libshogun/features/TOPFeatures.h
| M	src/libshogunui/GUIHMM.h
| M	src/modular/Distribution.i
| M	src/python_modular/swig_typemaps.i
|  
* commit 42d47fd5dc6309e485d8cf38a33e15983f4db9ca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 19 05:09:10 2009 +0000
| 
|     get modular string featurs back to work in modular interface, compile with -fvirtual
| 
| M	src/Makefile.template
| M	src/configure
| M	src/libshogun/classifier/mkl/MKLMultiClass2glpk.h
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/distributions/Distribution.h
| M	src/libshogun/distributions/histogram/Histogram.cpp
| M	src/libshogun/distributions/histogram/Histogram.h
| M	src/modular/Features.i
| M	src/octave_modular/swig_typemaps.i
| M	src/python_modular/sg_print_functions.cpp
|  
* commit 08aa898cb0555b84ac605e0be2cc097b6fc95c96
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 18 21:23:42 2009 +0000
| 
|     get modular interfaces back to work
| 
| M	examples/python_modular/mkl_multiclass.py
| M	src/Makefile.template
| M	src/configure
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/DistanceMachine.h
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/LDA.h
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/svm/WDSVMOcas.h
| M	src/libshogun/distance/CanberraMetric.h
| M	src/libshogun/distance/Distance.h
| M	src/libshogun/distance/HammingWordDistance.h
| M	src/libshogun/distance/SparseEuclidianDistance.h
| M	src/libshogun/distributions/Distribution.h
| M	src/libshogun/distributions/histogram/Histogram.h
| M	src/libshogun/distributions/hmm/HMM.h
| M	src/libshogun/evaluation/PerformanceMeasures.h
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/CombinedFeatures.h
| M	src/libshogun/features/FKFeatures.h
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/TOPFeatures.h
| M	src/libshogun/kernel/AUCKernel.h
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/kernel/CommUlongStringKernel.h
| M	src/libshogun/kernel/DistanceKernel.h
| M	src/libshogun/kernel/HistogramWordStringKernel.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogun/kernel/SparseGaussianKernel.h
| M	src/libshogun/lib/File.h
| M	src/libshogun/preproc/PreProc.h
| M	src/libshogun/structure/DynProg.h
| M	src/libshogun/structure/PlifMatrix.h
| M	src/libshogun/structure/SegmentLoss.h
| M	src/modular/Features.i
| M	src/modular/Library.i
| M	src/modular/SGBase.i
| M	src/octave_modular/swig_typemaps.i
| M	src/python_modular/swig_typemaps.i
| M	src/r_modular/swig_typemaps.i
|  
* commit bf566ffcf48fbb8f3130b4151ec4d894edbc82b7
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Sun Oct 18 18:17:07 2009 +0000
| 
|     bugfix
| 
| M	examples/python/mkl_multiclass.py
| M	examples/python_modular/mkl_multiclass.py
|  
* commit d7f914ff5c8069cdcf43200fb5d478a0ebda44db
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 18 18:06:39 2009 +0000
| 
|     minor fix
| 
| M	examples/octave_modular/mkl_multiclass.m
|  
* commit 73264dbc9af373ed385c3cba1db4393f8d25e6f5
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Sun Oct 18 18:06:12 2009 +0000
| 
|     example fro MKLMultiClass not tested yet
| 
| M	examples/matlab_and_octave/mkl_multiclass.m
| A	examples/python/mkl_multiclass.py
| A	examples/python_modular/mkl_multiclass.py
| A	examples/r/mkl_multiclass.R
| A	examples/r_modular/mkl_multiclass.R
|  
* commit 57872323cefc992572a2a1a6e9db1d9619e3f9b7
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Sun Oct 18 17:47:38 2009 +0000
| 
|     ocatave_modular example does not work yet
| 
| A	examples/octave_modular/mkl_multiclass.m
|  
* commit 5df2f1bb45a54a087f6885d8f93c1640f920ad52
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Sun Oct 18 17:30:25 2009 +0000
| 
|     example works for CMKLMultiClass
| 
| M	examples/matlab_and_octave/mkl_multiclass.m
|  
* commit 324f47bd4c241660c942d7499053e2086d479a04
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Sun Oct 18 17:00:04 2009 +0000
| 
|     added onek ernel more and some options to example
| 
| M	examples/cmdline/mkl_multiclass.sg
|  
* commit b3217db4cade2f3f14d6f6e5dc369a8bfbdc65c2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 18 16:53:51 2009 +0000
| 
|     use a new train function for mkl multiclass in ui
| 
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIClassifier.h
| M	src/libshogunui/SGInterface.cpp
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/kernel.m
|  
* commit b6e79e42bd94e3a09b29a37ff1b0fb0d005577ea
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Sun Oct 18 16:52:38 2009 +0000
| 
|     fixed a bug in GUIClassifier.cpp, CMKLMultiClass is now called via train_Svm() and not train_mkl because it is not derived from CMKL in order to avoid multiple inheritance
| 
| M	examples/cmdline/mkl_multiclass.sg
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit f6338278f457cecbe7f9a6e1ef1cde0226466856
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 18 16:18:46 2009 +0000
| 
|     rename MCSVM to scattersvm / mark it experiemntal
| 
| M	src/libshogun/classifier/Classifier.h
| D	src/libshogun/classifier/svm/MCSVM.cpp
| D	src/libshogun/classifier/svm/MCSVM.h
| A	src/libshogun/classifier/svm/ScatterSVM.cpp
| A	src/libshogun/classifier/svm/ScatterSVM.h
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/Classifier.i
|  
* commit dac2c2fac06c7afe3b78eb27921f508aea2df709
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Sun Oct 18 15:49:09 2009 +0000
| 
|     temporary check in
| 
| A	examples/cmdline/mkl_multiclass.sg
| M	examples/matlab_and_octave/mkl_multiclass.m
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 090d63d749c5680e591fcfe3f5552060269a647f
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Sun Oct 18 12:57:38 2009 +0000
| 
|     added
|     using namespace shogun;
|     in order to fix a compitle time error from this file
| 
| M	src/matlab/MatlabInterface.h
|  
* commit 59d392a6e523ade3f343160da4d9d7efdc13d0fb
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Sun Oct 18 12:18:08 2009 +0000
| 
|     format changes
| 
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
| M	src/libshogun/classifier/mkl/MKLMultiClass2glpk.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass2glpk.h
|  
* commit 896ef33b0f94947e715c4ed779bcdd3bb5315ba1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 17 07:52:00 2009 +0000
| 
|     move remaining classes/functions/variables into shogun namespace
| 
| M	examples/libshogun/minimal.cpp
| M	examples/libshogun/mklmulticlass.cpp
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/base/init.cpp
| M	src/libshogun/base/init.h
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.h
| M	src/libshogun/classifier/svm/SVM_linear.cpp
| M	src/libshogun/classifier/svm/SVM_linear.h
| M	src/libshogun/classifier/svm/Tron.h
| M	src/libshogun/classifier/svm/gpdt.cpp
| M	src/libshogun/classifier/svm/gpdt.h
| M	src/libshogun/classifier/svm/gpdtsolve.cpp
| M	src/libshogun/classifier/svm/gpdtsolve.h
| M	src/libshogun/classifier/svm/gpm.cpp
| M	src/libshogun/classifier/svm/gpm.h
| M	src/libshogun/classifier/svm/libocas.cpp
| M	src/libshogun/classifier/svm/libocas.h
| M	src/libshogun/classifier/svm/libocas_common.h
| M	src/libshogun/classifier/svm/pr_loqo.cpp
| M	src/libshogun/classifier/svm/pr_loqo.h
| M	src/libshogun/classifier/svm/qpssvmlib.cpp
| M	src/libshogun/classifier/svm/qpssvmlib.h
| M	src/libshogun/classifier/svm/ssl.cpp
| M	src/libshogun/classifier/svm/ssl.h
| M	src/libshogun/clustering/KMeans.cpp
| M	src/libshogun/kernel/LocalAlignmentStringKernel.cpp
| M	src/libshogun/kernel/LocalAlignmentStringKernel.h
| M	src/libshogun/lib/Signal.h
| M	src/libshogun/lib/io.h
| M	src/libshogun/lib/lapack.cpp
| M	src/libshogun/lib/lapack.h
| M	src/libshogun/lib/memory.h
| M	src/modular/Library.i
| M	src/modular/SGBase.i
|  
* commit e426d1af732d89f2869f85600928a978b410c051
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 18:49:22 2009 +0000
| 
|     minor documentation fixes
| 
| M	doc/Doxyfile
| M	src/libshogun/classifier/mkl/MKLMultiClass2glpk.h
| M	src/libshogun/lib/Mathematics.h
|  
* commit 1cbfe87bf5cd3d07b8a58f8ab5438fc32476b2c5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 18:38:51 2009 +0000
| 
|     namespaces for the remaining classes
| 
| M	examples/python_modular/classifier_gmnpsvm.py
| M	src/libshogun/classifier/LPBoost.cpp
| M	src/libshogun/classifier/LPBoost.h
| M	src/libshogun/classifier/LPM.cpp
| M	src/libshogun/classifier/LPM.h
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/SubGradientLPM.cpp
| M	src/libshogun/classifier/SubGradientLPM.h
| M	src/libshogun/classifier/svm/CPLEXSVM.cpp
| M	src/libshogun/classifier/svm/CPLEXSVM.h
| M	src/libshogun/kernel/AUCKernel.h
| M	src/libshogun/lib/Cplex.cpp
| M	src/libshogun/lib/Cplex.h
| M	src/libshogun/lib/DynInt.h
| M	src/libshogun/lib/GCArray.h
| M	src/libshogun/lib/IndirectObject.h
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 8dc09a98f61ab6813ca3212515fdb455781e5607
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 18:31:44 2009 +0000
| 
|     update examples to work with namespaces
| 
| M	examples/libshogun/dyn_int.cpp
| M	examples/libshogun/gc_array.cpp
| M	examples/libshogun/indirect_object.cpp
| M	examples/libshogun/minimal_svm.cpp
| M	examples/libshogun/rbf_kernel.cpp
| M	examples/libshogun/rbf_svm.cpp
| M	examples/libshogun/revlin_kernel.cpp
|  
* commit 451d618de64b5fb5a55a88f8c814807262ce5a7c
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Fri Oct 16 18:23:03 2009 +0000
| 
|     final modifications after namespace changes
| 
| M	examples/libshogun/mklmulticlass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
|  
* commit de7f79624b5ebc57493f451d09f05a899d0f9b2d
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Fri Oct 16 18:14:02 2009 +0000
| 
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
| A	src/libshogun/classifier/mkl/MKLMultiClass2glpk.cpp
| A	src/libshogun/classifier/mkl/MKLMultiClass2glpk.h
|  
* commit ddb6d4de43268ea4f5f3f6a7ffae6e3de842905e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 18:08:16 2009 +0000
| 
|     - modular interfaces compile now (at least)
|     - remove load/save_init in preprocs
| 
| M	src/NEWS
| M	src/libshogun/kernel/DiceKernelNormalizer.h
| M	src/libshogun/kernel/TanimotoKernelNormalizer.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/libshogun/lib/BinaryStream.h
| M	src/libshogun/lib/BitString.h
| M	src/libshogun/preproc/LogPlusOne.cpp
| M	src/libshogun/preproc/LogPlusOne.h
| M	src/libshogun/preproc/NormOne.cpp
| M	src/libshogun/preproc/NormOne.h
| M	src/libshogun/preproc/PCACut.cpp
| M	src/libshogun/preproc/PCACut.h
| M	src/libshogun/preproc/PreProc.h
| M	src/libshogun/preproc/PruneVarSubMean.cpp
| M	src/libshogun/preproc/PruneVarSubMean.h
| M	src/libshogun/preproc/SortUlongString.cpp
| M	src/libshogun/preproc/SortUlongString.h
| M	src/libshogun/preproc/SortWordString.cpp
| M	src/libshogun/preproc/SortWordString.h
| M	src/libshogunui/GUIPreProc.cpp
| M	src/libshogunui/GUIPreProc.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/modular/Distance.i
| M	src/modular/Features.i
| M	src/modular/Kernel.i
| M	src/modular/Library.i
| M	src/modular/PreProc.i
| M	src/modular/SGBase.i
|  
* commit 27fe50b0c09348cd0872295f68ef43c58e3a4865
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 17:18:47 2009 +0000
| 
|     get static interfaces back to work
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/cmdline/CmdLineInterface.h
| M	src/libshogun/kernel/RidgeKernelNormalizer.h
| M	src/libshogun/kernel/VarianceKernelNormalizer.h
| M	src/libshogun/preproc/SparsePreProc.h
| M	src/libshogunui/GUIClassifier.h
| M	src/libshogunui/GUIDistance.cpp
| M	src/libshogunui/GUIDistance.h
| M	src/libshogunui/GUIFeatures.cpp
| M	src/libshogunui/GUIFeatures.h
| M	src/libshogunui/GUIHMM.cpp
| M	src/libshogunui/GUIHMM.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/GUIKernel.h
| M	src/libshogunui/GUILabels.cpp
| M	src/libshogunui/GUILabels.h
| M	src/libshogunui/GUIMath.cpp
| M	src/libshogunui/GUIMath.h
| M	src/libshogunui/GUIPluginEstimate.cpp
| M	src/libshogunui/GUIPluginEstimate.h
| M	src/libshogunui/GUIPreProc.cpp
| M	src/libshogunui/GUIPreProc.h
| M	src/libshogunui/GUIStructure.cpp
| M	src/libshogunui/GUIStructure.h
| M	src/libshogunui/GUITime.cpp
| M	src/libshogunui/GUITime.h
| M	src/libshogunui/SGInterface.h
| M	src/octave/OctaveInterface.h
| M	src/python/PythonInterface.cpp
| M	src/python/PythonInterface.h
| M	src/r/RInterface.h
|  
* commit 056f3c3f5b0d9e814ab88b4277e0260cb45e6b3a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 17:03:20 2009 +0000
| 
|     move feature types into separate file
| 
| A	src/libshogun/features/FeatureTypes.h
|  
* commit 67bf1d5bb777421945ced63247db5c4d704b99b7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 17:02:32 2009 +0000
| 
|     WARNING DON'T SVN UP, this introduces namespaces in libshogun and as a consequence breaks *all* static+modular interfaces
| 
| M	src/libshogun/base/Parallel.cpp
| M	src/libshogun/base/Parallel.h
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/base/Version.cpp
| M	src/libshogun/base/Version.h
| M	src/libshogun/base/init.cpp
| M	src/libshogun/base/init.h
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/DistanceMachine.cpp
| M	src/libshogun/classifier/DistanceMachine.h
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/classifier/KNN.h
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/KernelPerceptron.cpp
| M	src/libshogun/classifier/KernelPerceptron.h
| M	src/libshogun/classifier/LDA.cpp
| M	src/libshogun/classifier/LDA.h
| M	src/libshogun/classifier/LinearClassifier.cpp
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/Perceptron.cpp
| M	src/libshogun/classifier/Perceptron.h
| M	src/libshogun/classifier/PluginEstimate.cpp
| M	src/libshogun/classifier/PluginEstimate.h
| M	src/libshogun/classifier/mkl/MKL.cpp
| M	src/libshogun/classifier/mkl/MKL.h
| M	src/libshogun/classifier/mkl/MKLClassification.cpp
| M	src/libshogun/classifier/mkl/MKLClassification.h
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
| M	src/libshogun/classifier/mkl/MKLOneClass.cpp
| M	src/libshogun/classifier/mkl/MKLOneClass.h
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.h
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
| M	src/libshogun/classifier/svm/GMNPSVM.h
| M	src/libshogun/classifier/svm/GNPPSVM.cpp
| M	src/libshogun/classifier/svm/GNPPSVM.h
| M	src/libshogun/classifier/svm/GPBTSVM.cpp
| M	src/libshogun/classifier/svm/GPBTSVM.h
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/LibSVM.cpp
| M	src/libshogun/classifier/svm/LibSVM.h
| M	src/libshogun/classifier/svm/LibSVMMultiClass.cpp
| M	src/libshogun/classifier/svm/LibSVMMultiClass.h
| M	src/libshogun/classifier/svm/LibSVMOneClass.cpp
| M	src/libshogun/classifier/svm/LibSVMOneClass.h
| M	src/libshogun/classifier/svm/MCSVM.cpp
| M	src/libshogun/classifier/svm/MCSVM.h
| M	src/libshogun/classifier/svm/MPDSVM.cpp
| M	src/libshogun/classifier/svm/MPDSVM.h
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.h
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVM.h
| M	src/libshogun/classifier/svm/SVMLin.cpp
| M	src/libshogun/classifier/svm/SVMLin.h
| M	src/libshogun/classifier/svm/SVMOcas.cpp
| M	src/libshogun/classifier/svm/SVMOcas.h
| M	src/libshogun/classifier/svm/SVMSGD.cpp
| M	src/libshogun/classifier/svm/SVMSGD.h
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.h
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/SVM_light.h
| M	src/libshogun/classifier/svm/SVM_linear.h
| M	src/libshogun/classifier/svm/SubGradientSVM.cpp
| M	src/libshogun/classifier/svm/SubGradientSVM.h
| M	src/libshogun/classifier/svm/Tron.cpp
| M	src/libshogun/classifier/svm/Tron.h
| M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| M	src/libshogun/classifier/svm/WDSVMOcas.h
| M	src/libshogun/classifier/svm/gmnplib.cpp
| M	src/libshogun/classifier/svm/gmnplib.h
| M	src/libshogun/classifier/svm/gnpplib.cpp
| M	src/libshogun/classifier/svm/gnpplib.h
| M	src/libshogun/classifier/svm/gpdt.h
| M	src/libshogun/classifier/svm/libocas.cpp
| M	src/libshogun/classifier/svm/pr_loqo.cpp
| M	src/libshogun/classifier/svm/qpbsvmlib.cpp
| M	src/libshogun/classifier/svm/qpbsvmlib.h
| M	src/libshogun/classifier/svm/qpssvmlib.cpp
| M	src/libshogun/classifier/svm/ssl.cpp
| M	src/libshogun/classifier/svm/ssl.h
| M	src/libshogun/clustering/Hierarchical.cpp
| M	src/libshogun/clustering/Hierarchical.h
| M	src/libshogun/clustering/KMeans.cpp
| M	src/libshogun/clustering/KMeans.h
| M	src/libshogun/distance/BrayCurtisDistance.cpp
| M	src/libshogun/distance/BrayCurtisDistance.h
| M	src/libshogun/distance/CanberraMetric.cpp
| M	src/libshogun/distance/CanberraMetric.h
| M	src/libshogun/distance/CanberraWordDistance.cpp
| M	src/libshogun/distance/CanberraWordDistance.h
| M	src/libshogun/distance/ChebyshewMetric.cpp
| M	src/libshogun/distance/ChebyshewMetric.h
| M	src/libshogun/distance/ChiSquareDistance.cpp
| M	src/libshogun/distance/ChiSquareDistance.h
| M	src/libshogun/distance/CosineDistance.cpp
| M	src/libshogun/distance/CosineDistance.h
| M	src/libshogun/distance/Distance.cpp
| M	src/libshogun/distance/Distance.h
| M	src/libshogun/distance/EuclidianDistance.cpp
| M	src/libshogun/distance/EuclidianDistance.h
| M	src/libshogun/distance/GeodesicMetric.cpp
| M	src/libshogun/distance/GeodesicMetric.h
| M	src/libshogun/distance/HammingWordDistance.cpp
| M	src/libshogun/distance/HammingWordDistance.h
| M	src/libshogun/distance/JensenMetric.cpp
| M	src/libshogun/distance/JensenMetric.h
| M	src/libshogun/distance/ManhattanMetric.cpp
| M	src/libshogun/distance/ManhattanMetric.h
| M	src/libshogun/distance/ManhattanWordDistance.cpp
| M	src/libshogun/distance/ManhattanWordDistance.h
| M	src/libshogun/distance/MinkowskiMetric.cpp
| M	src/libshogun/distance/MinkowskiMetric.h
| M	src/libshogun/distance/RealDistance.h
| M	src/libshogun/distance/SimpleDistance.h
| M	src/libshogun/distance/SparseDistance.h
| M	src/libshogun/distance/SparseEuclidianDistance.cpp
| M	src/libshogun/distance/SparseEuclidianDistance.h
| M	src/libshogun/distance/StringDistance.h
| M	src/libshogun/distance/TanimotoDistance.cpp
| M	src/libshogun/distance/TanimotoDistance.h
| M	src/libshogun/distributions/Distribution.cpp
| M	src/libshogun/distributions/Distribution.h
| M	src/libshogun/distributions/histogram/Histogram.cpp
| M	src/libshogun/distributions/histogram/Histogram.h
| M	src/libshogun/distributions/hmm/GHMM.cpp
| M	src/libshogun/distributions/hmm/GHMM.h
| M	src/libshogun/distributions/hmm/HMM.cpp
| M	src/libshogun/distributions/hmm/HMM.h
| M	src/libshogun/distributions/hmm/LinearHMM.cpp
| M	src/libshogun/distributions/hmm/LinearHMM.h
| M	src/libshogun/evaluation/PerformanceMeasures.cpp
| M	src/libshogun/evaluation/PerformanceMeasures.h
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/AttributeFeatures.cpp
| M	src/libshogun/features/AttributeFeatures.h
| M	src/libshogun/features/CombinedDotFeatures.cpp
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/CombinedFeatures.cpp
| M	src/libshogun/features/CombinedFeatures.h
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/DummyFeatures.h
| M	src/libshogun/features/ExplicitSpecFeatures.cpp
| M	src/libshogun/features/ExplicitSpecFeatures.h
| M	src/libshogun/features/FKFeatures.cpp
| M	src/libshogun/features/FKFeatures.h
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/PolyFeatures.cpp
| M	src/libshogun/features/PolyFeatures.h
| M	src/libshogun/features/RealFileFeatures.cpp
| M	src/libshogun/features/RealFileFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/TOPFeatures.cpp
| M	src/libshogun/features/TOPFeatures.h
| M	src/libshogun/features/WDFeatures.cpp
| M	src/libshogun/features/WDFeatures.h
| M	src/libshogun/kernel/AUCKernel.cpp
| M	src/libshogun/kernel/AUCKernel.h
| M	src/libshogun/kernel/AvgDiagKernelNormalizer.h
| M	src/libshogun/kernel/Chi2Kernel.cpp
| M	src/libshogun/kernel/Chi2Kernel.h
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/kernel/CommUlongStringKernel.cpp
| M	src/libshogun/kernel/CommUlongStringKernel.h
| M	src/libshogun/kernel/CommWordStringKernel.cpp
| M	src/libshogun/kernel/CommWordStringKernel.h
| M	src/libshogun/kernel/ConstKernel.cpp
| M	src/libshogun/kernel/ConstKernel.h
| M	src/libshogun/kernel/CustomKernel.cpp
| M	src/libshogun/kernel/CustomKernel.h
| M	src/libshogun/kernel/DiagKernel.cpp
| M	src/libshogun/kernel/DiagKernel.h
| M	src/libshogun/kernel/DistanceKernel.cpp
| M	src/libshogun/kernel/DistanceKernel.h
| M	src/libshogun/kernel/FirstElementKernelNormalizer.h
| M	src/libshogun/kernel/FixedDegreeStringKernel.cpp
| M	src/libshogun/kernel/FixedDegreeStringKernel.h
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/GaussianShiftKernel.cpp
| M	src/libshogun/kernel/GaussianShiftKernel.h
| M	src/libshogun/kernel/GaussianShortRealKernel.cpp
| M	src/libshogun/kernel/GaussianShortRealKernel.h
| M	src/libshogun/kernel/HistogramWordStringKernel.cpp
| M	src/libshogun/kernel/HistogramWordStringKernel.h
| M	src/libshogun/kernel/IdentityKernelNormalizer.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/kernel/LinearByteKernel.cpp
| M	src/libshogun/kernel/LinearByteKernel.h
| M	src/libshogun/kernel/LinearKernel.cpp
| M	src/libshogun/kernel/LinearKernel.h
| M	src/libshogun/kernel/LinearStringKernel.cpp
| M	src/libshogun/kernel/LinearStringKernel.h
| M	src/libshogun/kernel/LinearWordKernel.cpp
| M	src/libshogun/kernel/LinearWordKernel.h
| M	src/libshogun/kernel/LocalAlignmentStringKernel.cpp
| M	src/libshogun/kernel/LocalAlignmentStringKernel.h
| M	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/LocalityImprovedStringKernel.h
| M	src/libshogun/kernel/MatchWordStringKernel.cpp
| M	src/libshogun/kernel/MatchWordStringKernel.h
| M	src/libshogun/kernel/OligoStringKernel.cpp
| M	src/libshogun/kernel/OligoStringKernel.h
| M	src/libshogun/kernel/PolyKernel.cpp
| M	src/libshogun/kernel/PolyKernel.h
| M	src/libshogun/kernel/PolyMatchStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchStringKernel.h
| M	src/libshogun/kernel/PolyMatchWordStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchWordStringKernel.h
| M	src/libshogun/kernel/PyramidChi2.cpp
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.h
| M	src/libshogun/kernel/SalzbergWordStringKernel.cpp
| M	src/libshogun/kernel/SalzbergWordStringKernel.h
| M	src/libshogun/kernel/SigmoidKernel.cpp
| M	src/libshogun/kernel/SigmoidKernel.h
| M	src/libshogun/kernel/SimpleKernel.h
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/libshogun/kernel/SparseGaussianKernel.cpp
| M	src/libshogun/kernel/SparseGaussianKernel.h
| M	src/libshogun/kernel/SparseKernel.h
| M	src/libshogun/kernel/SparseLinearKernel.cpp
| M	src/libshogun/kernel/SparseLinearKernel.h
| M	src/libshogun/kernel/SparsePolyKernel.cpp
| M	src/libshogun/kernel/SparsePolyKernel.h
| M	src/libshogun/kernel/SqrtDiagKernelNormalizer.h
| M	src/libshogun/kernel/StringKernel.h
| M	src/libshogun/kernel/TensorProductPairKernel.cpp
| M	src/libshogun/kernel/TensorProductPairKernel.h
| M	src/libshogun/kernel/WeightedCommWordStringKernel.cpp
| M	src/libshogun/kernel/WeightedCommWordStringKernel.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
| M	src/libshogun/lib/Array.h
| M	src/libshogun/lib/Array2.h
| M	src/libshogun/lib/Array3.h
| M	src/libshogun/lib/Cache.h
| M	src/libshogun/lib/DynamicArray.h
| M	src/libshogun/lib/File.cpp
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/Hash.cpp
| M	src/libshogun/lib/Hash.h
| M	src/libshogun/lib/List.h
| M	src/libshogun/lib/Mathematics.cpp
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/lib/MemoryMappedFile.h
| M	src/libshogun/lib/Set.h
| M	src/libshogun/lib/ShogunException.cpp
| M	src/libshogun/lib/ShogunException.h
| M	src/libshogun/lib/Signal.cpp
| M	src/libshogun/lib/Signal.h
| M	src/libshogun/lib/SimpleFile.h
| M	src/libshogun/lib/Time.cpp
| M	src/libshogun/lib/Time.h
| M	src/libshogun/lib/Trie.cpp
| M	src/libshogun/lib/Trie.h
| M	src/libshogun/lib/io.cpp
| M	src/libshogun/lib/io.h
| M	src/libshogun/lib/lapack.cpp
| M	src/libshogun/lib/memory.cpp
| M	src/libshogun/preproc/LogPlusOne.cpp
| M	src/libshogun/preproc/LogPlusOne.h
| M	src/libshogun/preproc/NormDerivativeLem3.cpp
| M	src/libshogun/preproc/NormDerivativeLem3.h
| M	src/libshogun/preproc/NormOne.cpp
| M	src/libshogun/preproc/NormOne.h
| M	src/libshogun/preproc/PCACut.cpp
| M	src/libshogun/preproc/PCACut.h
| M	src/libshogun/preproc/PreProc.cpp
| M	src/libshogun/preproc/PreProc.h
| M	src/libshogun/preproc/PruneVarSubMean.cpp
| M	src/libshogun/preproc/PruneVarSubMean.h
| M	src/libshogun/preproc/SimplePreProc.h
| M	src/libshogun/preproc/SortUlongString.cpp
| M	src/libshogun/preproc/SortUlongString.h
| M	src/libshogun/preproc/SortWordString.cpp
| M	src/libshogun/preproc/SortWordString.h
| M	src/libshogun/preproc/SparsePreProc.h
| M	src/libshogun/preproc/StringPreProc.h
| M	src/libshogun/regression/KRR.cpp
| M	src/libshogun/regression/KRR.h
| M	src/libshogun/regression/Regression.h
| M	src/libshogun/regression/svr/LibSVR.cpp
| M	src/libshogun/regression/svr/LibSVR.h
| M	src/libshogun/regression/svr/MKLRegression.cpp
| M	src/libshogun/regression/svr/MKLRegression.h
| M	src/libshogun/regression/svr/SVR_light.cpp
| M	src/libshogun/regression/svr/SVR_light.h
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogun/structure/IntronList.cpp
| M	src/libshogun/structure/IntronList.h
| M	src/libshogun/structure/Plif.cpp
| M	src/libshogun/structure/Plif.h
| M	src/libshogun/structure/PlifArray.cpp
| M	src/libshogun/structure/PlifArray.h
| M	src/libshogun/structure/PlifBase.h
| M	src/libshogun/structure/PlifMatrix.cpp
| M	src/libshogun/structure/PlifMatrix.h
| M	src/libshogun/structure/SegmentLoss.cpp
| M	src/libshogun/structure/SegmentLoss.h
| M	src/modular/SGBase.i
| M	src/python_modular/sg_print_functions.cpp
|  
* commit 405ee801affc87b441e38c344bba72bd4124ca93
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Oct 16 16:53:28 2009 +0000
| 
|     fixed warning
| 
| M	src/libshogun/classifier/svm/SVM.cpp
|  
* commit 4afb327d81dbd10de741356476ea4b2390a30864
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Oct 16 16:52:41 2009 +0000
| 
|     ported code of custom linear term enabled LibSVM to trunk
| 
| M	src/libshogun/classifier/svm/LibSVM.cpp
| M	src/libshogun/classifier/svm/LibSVM.h
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.h
|  
* commit a53895c3af56818b581a38fa9af7f338e52d6e36
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Fri Oct 16 16:49:49 2009 +0000
| 
|     added some comments to main class
| 
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
|  
* commit 0dcaf4f0c1bfa10aec670a7f6156970f534aef99
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Fri Oct 16 16:01:35 2009 +0000
| 
|     started to clean it up, not finished yet
| 
| M	examples/libshogun/mklmulticlass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
|  
* commit bd0874a114e82ce4b8660c0719c68b9d4fb78473
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Oct 16 13:30:55 2009 +0000
| 
|     adjusted to new linear_term format
| 
| M	src/libshogun/regression/svr/SVR_light.cpp
|  
* commit ad1420a67a80fed675329f06aee17f78e8d0bba0
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Oct 16 13:27:40 2009 +0000
| 
|     moved linear_term (including getter/setter) from SVM_light to base class SVM, as the code will also be used by LibSVM
| 
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.h
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVM.h
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/SVM_light.h
|  
* commit 5bbd2214a2e20fb90aa5cefc943302dec04e4203
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Oct 16 12:41:49 2009 +0000
| 
|     included STL
| 
| M	src/libshogun/base/SGObject.h
|  
* commit 24b002b1586d900f6398ecef67df305c87b8d245
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Oct 16 12:40:13 2009 +0000
| 
|     included bindings for STL structures (std::vector)
| 
| M	src/modular/SGBase.i
|  
* commit f6fa46ce08438193c356f1555078e55310d1bda3
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Oct 16 11:23:37 2009 +0000
| 
|     -- documented something more
| 
| M	src/libshogun/features/PolyFeatures.h
| M	src/libshogun/structure/DynProg.h
| M	src/libshogun/structure/PlifArray.h
| M	src/libshogun/structure/PlifBase.h
| M	src/libshogun/structure/PlifMatrix.h
|  
* commit 554ad00d64728d4071a2d21625153a18cd01a76d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 08:40:29 2009 +0000
| 
|     update news
| 
| M	src/NEWS
|  
* commit 6a78faa76c96c960eb2c332fac0e3d2576f6d4c7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 08:36:51 2009 +0000
| 
|     remove a couple of global symbols (make them class specific/static)
| 
| M	src/libshogun/classifier/SubGradientLPM.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/classifier/svm/SubGradientSVM.cpp
| M	src/libshogun/classifier/svm/SubGradientSVM.h
| M	src/libshogun/classifier/svm/qpbsvmlib.cpp
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
|  
* commit cb8cf75bd8c089901b1300b0f0878e4a50716909
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 08:36:28 2009 +0000
| 
|     fix train function (w/ labels)
| 
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
|  
* commit d9c3431fb835579d90cb422f56e608ea70bae073
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 07:24:19 2009 +0000
| 
|     remove accidentally commited debug code
| 
| M	src/modular/SGBase.i
|  
* commit 51a5e32360bb6452f6eec333d9355bdf5db2c7f2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 07:22:24 2009 +0000
| 
|     make the classifier classify function pure virtual
| 
| M	src/NEWS
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/classifier/KNN.h
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/LinearClassifier.cpp
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/PluginEstimate.cpp
| M	src/libshogun/classifier/PluginEstimate.h
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.h
| M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| M	src/libshogun/classifier/svm/WDSVMOcas.h
| M	src/libshogun/clustering/Hierarchical.h
| M	src/libshogun/clustering/KMeans.h
| M	src/libshogun/regression/KRR.cpp
| M	src/libshogun/regression/KRR.h
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIClassifier.h
| M	src/libshogunui/GUIPluginEstimate.cpp
| M	src/libshogunui/GUIPluginEstimate.h
| M	src/modular/SGBase.i
|  
* commit 1b61f1f1aa7919c735194e214f7e1ae829504e80
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 15 17:34:05 2009 +0000
| 
|     minor style improvements; add twonorm function
| 
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
| M	src/libshogun/lib/Mathematics.h
|  
* commit dbab0daa55b5e5f6e80b67e33fe53b238fc7bde2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 15 15:32:51 2009 +0000
| 
|     update examples
| 
| M	examples/libshogun/Makefile
| D	examples/libshogun/gnmpmkl.cpp
| A	examples/libshogun/mklmulticlass.cpp
| A	examples/matlab_and_octave/mkl_multiclass.m
| M	examples/python_modular/classifier_gmnpsvm.py
|  
* commit 4a95ab22d2f46e1719a49dd7faef646587f953ea
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 15 15:32:26 2009 +0000
| 
|     integrate multi class mkl into static and modular interfaces
| 
| M	src/configure
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/classifier/Classifier.h
| A	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| A	src/libshogun/classifier/mkl/MKLMultiClass.h
| D	src/libshogun/classifier/mkl/MKLMulticlass.h
| M	src/libshogun/classifier/svm/SVM_light.cpp
| D	src/libshogun/classifier/svm/gmnpmkl.cpp
| D	src/libshogun/classifier/svm/gmnpmkl.h
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/Classifier.i
|  
* commit 938fc92f2a88e7cfbb22689598dc16d43c94c82d
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 15 13:52:04 2009 +0000
| 
|     renamed DA_SVM files
| 
| D	src/libshogun/classifier/svm/DA_SVM.cpp
| D	src/libshogun/classifier/svm/DA_SVM.h
| A	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| A	src/libshogun/classifier/svm/DomainAdaptationSVM.h
|  
* commit 28b4b9e3f8eae49c172d660191b1dc4beb41aa41
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 15 13:47:10 2009 +0000
| 
|     renaming of class DA_SVM to DomainAdaptationSVM
| 
| M	src/libshogun/classifier/svm/DA_SVM.cpp
| M	src/libshogun/classifier/svm/DA_SVM.h
|  
* commit 43d96131fbcc7c9f6322922242433d303ac2bd12
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 15 13:36:14 2009 +0000
| 
|     DA_SVM fully documented
| 
| M	src/libshogun/classifier/svm/DA_SVM.cpp
| M	src/libshogun/classifier/svm/DA_SVM.h
|  
* commit 03668fe82a170e6f8a256c80b9293f31689a5a17
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Oct 15 13:32:00 2009 +0000
| 
|     -- sorry, forgot to remove some old code
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit 67a573e00f1c38a81329fb81c8b5097cc8a6d829
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Oct 15 13:27:31 2009 +0000
| 
|     -- remove file with wrong path from git repo
| 
| D	src/shogun/structure/PlifMatrix.h
|  
* commit 3b608dfacca2b4206e40d17618527b983bdadb30
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Oct 15 13:27:27 2009 +0000
| 
|     -- commented everything on the list you gave me Soeren
| 
| M	src/libshogun/features/PolyFeatures.h
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogun/structure/Plif.h
| M	src/libshogun/structure/PlifMatrix.h
| M	src/libshogun/structure/SegmentLoss.h
| A	src/shogun/structure/PlifMatrix.h
|  
* commit 7c01e5aa695625b05f0c297ef807e3e5d9957ff0
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Oct 15 13:27:24 2009 +0000
| 
|     apply bugfix
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit 5cf929f381a220ccf2a1a817f1ede8a675454bbd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 15 11:40:46 2009 +0000
| 
|     get r-modular interface back to work (when reference counting is disabled)
| 
| M	README
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
| M	examples/r_modular/classifier_gmnpsvm.R
| M	examples/r_modular/classifier_gpbtsvm.R
| M	examples/r_modular/classifier_knn.R
| M	examples/r_modular/classifier_lda.R
| M	examples/r_modular/classifier_liblinear.R
| M	examples/r_modular/classifier_libsvm.R
| M	examples/r_modular/classifier_libsvmmulticlass.R
| M	examples/r_modular/classifier_libsvmoneclass.R
| M	examples/r_modular/classifier_mpdsvm.R
| M	examples/r_modular/classifier_perceptron.R
| M	examples/r_modular/classifier_subgradientsvm.R
| M	examples/r_modular/classifier_svmlight.R
| M	examples/r_modular/classifier_svmlin.R
| M	examples/r_modular/classifier_svmocas.R
| M	examples/r_modular/classifier_svmsgd.R
| M	examples/r_modular/distribution_histogram.R
| M	examples/r_modular/distribution_hmm.R
| M	examples/r_modular/distribution_linearhmm.R
| M	examples/r_modular/kernel_combined.R
| M	examples/r_modular/kernel_commulongstring.R
| M	examples/r_modular/kernel_commwordstring.R
| M	examples/r_modular/kernel_fixeddegreestring.R
| M	examples/r_modular/kernel_histogramword.R
| M	examples/r_modular/kernel_linearstring.R
| M	examples/r_modular/kernel_localalignmentstring.R
| M	examples/r_modular/kernel_localityimprovedstring.R
| M	examples/r_modular/kernel_oligostring.R
| M	examples/r_modular/kernel_polymatchstring.R
| M	examples/r_modular/kernel_simplelocalityimprovedstring.R
| M	examples/r_modular/kernel_topfisher.R
| M	examples/r_modular/kernel_weightedcommwordstring.R
| M	examples/r_modular/kernel_weighteddegreepositionstring.R
| M	examples/r_modular/kernel_weighteddegreestring.R
| M	examples/r_modular/preproc_commulongstring.R
| M	examples/r_modular/preproc_commwordstring.R
| M	src/configure
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/lib/List.h
| M	src/libshogun/preproc/PreProc.h
| M	src/libshogunui/GUIPreProc.cpp
| M	src/r_modular/swig_typemaps.i
|  
* commit 90f2b59bae8ceed6a3da25e076dd91aec8bf4188
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 15 09:59:01 2009 +0000
| 
|     fixed warnings
| 
| M	src/libshogun/classifier/svm/DA_SVM.cpp
| M	src/libshogun/classifier/svm/DA_SVM.h
|  
* commit 2fee3f307484cb3d1aafe36e6a8df2931430ca4f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 15 09:09:47 2009 +0000
| 
|     fix typo in mkl doc
| 
| M	src/libshogun/classifier/mkl/MKL.h
|  
* commit a4bfaa4984d835c7821b5013b46f94fcecf0bb6e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 15 09:05:51 2009 +0000
| 
|     document most of the remaining parts
| 
| M	src/Makefile.template
| M	src/configure
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/mkl/MKL.h
| M	src/libshogun/classifier/mkl/MKLClassification.h
| M	src/libshogun/classifier/mkl/MKLOneClass.h
| M	src/libshogun/classifier/svm/SVM_libsvm.h
| M	src/libshogun/clustering/Hierarchical.cpp
| M	src/libshogun/clustering/Hierarchical.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/WDFeatures.h
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.h
| M	src/libshogun/kernel/VarianceKernelNormalizer.h
| M	src/libshogun/lib/Hash.h
| M	src/libshogun/lib/SimpleFile.h
| M	src/libshogun/regression/svr/MKLRegression.h
| M	src/libshogun/structure/DynProg.cpp
|  
* commit 9a307167688fe253c8ef09d7eaaf9acac66af363
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 15 06:38:44 2009 +0000
| 
|     document mkl properly
| 
| M	src/libshogun/classifier/mkl/MKLClassification.h
| M	src/libshogun/classifier/mkl/MKLOneClass.h
| M	src/libshogun/regression/svr/MKLRegression.h
|  
* commit 415642a353839b3b8b4facec066f6fbfd05291aa
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Wed Oct 14 17:28:32 2009 +0000
| 
|     unit test working for arbitrary B parameter
| 
| M	src/libshogun/classifier/svm/DA_SVM.cpp
|  
* commit 460de4b62f624fbb467a17a2a56d2b586ce6f251
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 14 16:40:11 2009 +0000
| 
|     document a bit more and add murmur hash
| 
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/lib/BinaryStream.h
| M	src/libshogun/lib/BitString.h
| M	src/libshogun/lib/Hash.cpp
| M	src/libshogun/lib/Hash.h
| M	src/libshogun/lib/MemoryMappedFile.h
| M	src/libshogun/lib/Set.h
| M	src/libshogun/lib/SimpleFile.h
| M	src/modular/Library.i
|  
* commit 012b976fc1c2761a4a3f7c7ef0a8b5cae1f70042
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Wed Oct 14 16:33:30 2009 +0000
| 
|     more elegant formulation of DA_SVM, which should support several stacked SVMs
| 
| M	src/libshogun/classifier/svm/DA_SVM.cpp
| M	src/libshogun/classifier/svm/DA_SVM.h
|  
* commit 1de1d0ae0a7daafa7024cc77f2f7faf161bef23d
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Wed Oct 14 15:18:36 2009 +0000
| 
|     verified version of DA_SVM for one level of classifiers
| 
| M	src/libshogun/classifier/svm/DA_SVM.cpp
| M	src/libshogun/classifier/svm/DA_SVM.h
|  
* commit 87e4f071c1028676cb5dce73977d74508981b12c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 12 18:43:02 2009 +0000
| 
|     show octave api version that is used
| 
| M	src/configure
|  
* commit 798aa4c3939d83dbef4750440d39908178d9af58
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 12 18:41:59 2009 +0000
| 
|     rename result to outputs to resolve conflict in r_modular
| 
| M	src/libshogun/classifier/svm/MCSVM.cpp
| M	src/libshogun/classifier/svm/MCSVM.h
|  
* commit 491a670788a80aa13c9216313ef377579604291e
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Oct 12 16:11:48 2009 +0000
| 
|     made DA_SVM available to bindings
| 
| M	src/modular/Classifier.i
|  
* commit c7abdc6ea5ca7d28aabd3d846c44cf359109050a
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Oct 12 16:10:00 2009 +0000
| 
|     typo
| 
| M	src/libshogun/features/Features.h
|  
* commit d2d8a76ad747d142fb32e62742b3eb57380003dd
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Oct 12 16:07:58 2009 +0000
| 
|     commented out duplicated serialization code, will have to be ironed out later
| 
| M	src/libshogun/classifier/KernelMachine.h
|  
* commit 1e505ec8ca6022891c9b67f360c5fc680a1c5112
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Oct 12 16:07:10 2009 +0000
| 
|     added enum for DA_SVM
| 
| M	src/libshogun/classifier/Classifier.h
|  
* commit 65b7529d6e1824e0c9b9ec543f70a226157abac5
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Oct 12 16:06:01 2009 +0000
| 
|     removed SVM_model from serialization code
| 
| M	src/libshogun/classifier/svm/SVM.h
|  
* commit 5239d15aee025f9fc5fb8c207f7bdc25d2becf45
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Oct 12 16:05:04 2009 +0000
| 
|     added SVMLight based implementation of Domain Adaptive SVM
| 
| A	src/libshogun/classifier/svm/DA_SVM.cpp
| A	src/libshogun/classifier/svm/DA_SVM.h
|  
* commit 1c88b058f7a9f1c93e7028fdcdc57a443092f4a0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 12 15:00:07 2009 +0000
| 
|     fix get_support_vectors
| 
| M	src/libshogun/classifier/KernelMachine.h
|  
* commit 0e76ec56fe75806ccf54f8727632f7041c03a19c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 12 15:00:00 2009 +0000
| 
|     fix get_support_vectors
| 
| M	examples/python_modular/classifier_libsvm.py
| A	examples/python_modular/classifier_svmlight_linear_term.py
|  
* commit 763895d9d0f37f8a02e10d73b011b244cf813f74
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 12 14:21:18 2009 +0000
| 
|     move ifdef up
| 
| M	src/libshogun/lib/memory.h
|  
* commit 18f8c3138deb1fe7cec6800d8c57742a138cb607
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 12 13:43:18 2009 +0000
| 
|     compile fixes for cplex based methods
| 
| M	src/libshogun/classifier/LPBoost.cpp
| M	src/libshogun/classifier/LPM.cpp
| M	src/libshogun/classifier/SubGradientLPM.cpp
| M	src/libshogun/classifier/svm/CPLEXSVM.cpp
| M	src/libshogun/lib/common.h
| M	src/libshogun/lib/memory.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit 2ac77358486d1d1075e746962d86d702fa59dd65
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 12 13:29:48 2009 +0000
| 
|     - fix permission error in init_shogun octave modular
|     - fix crasher in wdsvmocas
| 
| M	src/Makefile.template
| M	src/libshogun/classifier/svm/WDSVMOcas.cpp
|  
* commit 5aa2a7bd8766a1f7598c152b97b8514f2ce19124
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 6 17:18:21 2009 +0000
| 
|     fix compilation alpha variable naming clash
| 
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVM_light.cpp
|  
* commit bb4e71797aace8893cb46b6a3253dcf029aebfd0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 6 16:37:10 2009 +0000
| 
|     move model and classify functionality from SVM to KernelMachine
| 
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVM.h
|  
* commit 6267132096877699f4c73cd0bd5c5b43e6d8f461
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 6 11:05:32 2009 +0000
| 
|     seems like parameter-overloading functions must be defined in the uppermost class to be visible for swig. define for KRR accordingly.
| 
| M	examples/python_modular/regression_krr.py
| M	examples/python_modular/regression_libsvr.py
| M	src/libshogun/regression/KRR.h
| M	src/modular/Classifier.i
|  
* commit df22e24135d31b0e2568fa4bf7e9229abd077f90
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 6 10:17:20 2009 +0000
| 
|     transition classifiers/regressors/clustering methods to work with training data passed on method->train(data);
| 
| M	examples/octave_modular/classifier_knn.m
| M	examples/python_modular/classifier_knn.py
| M	examples/python_modular/regression_krr.py
| M	examples/r_modular/classifier_knn.R
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/classifier/KNN.h
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/KernelPerceptron.cpp
| M	src/libshogun/classifier/KernelPerceptron.h
| M	src/libshogun/classifier/LDA.cpp
| M	src/libshogun/classifier/LDA.h
| M	src/libshogun/classifier/LPBoost.h
| M	src/libshogun/classifier/LPM.h
| M	src/libshogun/classifier/Perceptron.cpp
| M	src/libshogun/classifier/Perceptron.h
| M	src/libshogun/classifier/PluginEstimate.cpp
| M	src/libshogun/classifier/PluginEstimate.h
| M	src/libshogun/classifier/SubGradientLPM.h
| M	src/libshogun/classifier/mkl/MKL.cpp
| M	src/libshogun/classifier/mkl/MKL.h
| M	src/libshogun/classifier/svm/CPLEXSVM.h
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
| M	src/libshogun/classifier/svm/GMNPSVM.h
| M	src/libshogun/classifier/svm/GNPPSVM.cpp
| M	src/libshogun/classifier/svm/GNPPSVM.h
| M	src/libshogun/classifier/svm/GPBTSVM.cpp
| M	src/libshogun/classifier/svm/GPBTSVM.h
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/LibSVM.cpp
| M	src/libshogun/classifier/svm/LibSVM.h
| M	src/libshogun/classifier/svm/LibSVMMultiClass.cpp
| M	src/libshogun/classifier/svm/LibSVMMultiClass.h
| M	src/libshogun/classifier/svm/LibSVMOneClass.cpp
| M	src/libshogun/classifier/svm/LibSVMOneClass.h
| M	src/libshogun/classifier/svm/MCSVM.cpp
| M	src/libshogun/classifier/svm/MCSVM.h
| M	src/libshogun/classifier/svm/MPDSVM.cpp
| M	src/libshogun/classifier/svm/MPDSVM.h
| M	src/libshogun/classifier/svm/SVMLin.cpp
| M	src/libshogun/classifier/svm/SVMLin.h
| M	src/libshogun/classifier/svm/SVMOcas.cpp
| M	src/libshogun/classifier/svm/SVMOcas.h
| M	src/libshogun/classifier/svm/SVMSGD.cpp
| M	src/libshogun/classifier/svm/SVMSGD.h
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/SVM_light.h
| M	src/libshogun/classifier/svm/SubGradientSVM.cpp
| M	src/libshogun/classifier/svm/SubGradientSVM.h
| M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| M	src/libshogun/classifier/svm/WDSVMOcas.h
| M	src/libshogun/classifier/svm/gmnpmkl.cpp
| M	src/libshogun/classifier/svm/gmnpmkl.h
| M	src/libshogun/clustering/Hierarchical.h
| M	src/libshogun/clustering/KMeans.cpp
| M	src/libshogun/clustering/KMeans.h
| M	src/libshogun/distributions/Distribution.h
| M	src/libshogun/distributions/hmm/GHMM.cpp
| M	src/libshogun/distributions/hmm/GHMM.h
| M	src/libshogun/distributions/hmm/HMM.cpp
| M	src/libshogun/distributions/hmm/HMM.h
| M	src/libshogun/distributions/hmm/LinearHMM.cpp
| M	src/libshogun/distributions/hmm/LinearHMM.h
| M	src/libshogun/regression/KRR.cpp
| M	src/libshogun/regression/KRR.h
| M	src/libshogun/regression/svr/LibSVR.cpp
| M	src/libshogun/regression/svr/LibSVR.h
| M	src/libshogun/regression/svr/SVR_light.cpp
| M	src/libshogun/regression/svr/SVR_light.h
|  
* commit 641bc0ea45e6cabe00991555a009ce745d9d49bc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 6 08:07:35 2009 +0000
| 
|     another forgotten commit
| 
| A	examples/matlab_and_octave/preproc_logplusone.m
| A	examples/matlab_and_octave/preproc_normone.m
| A	examples/matlab_and_octave/preproc_prunevarsubmean.m
| A	examples/matlab_and_octave/preproc_sortulongstring.m
| A	examples/matlab_and_octave/preproc_sortwordstring.m
|  
* commit 882d425e7b1f934a81187db499d798ad03c166fc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 6 08:07:08 2009 +0000
| 
|     forgotten commit
| 
| A	examples/octave_modular/kernel_auc.m
| A	examples/octave_modular/kernel_chi2.m
| A	examples/octave_modular/kernel_combined.m
| A	examples/octave_modular/kernel_commulongstring.m
| A	examples/octave_modular/kernel_commwordstring.m
| A	examples/octave_modular/kernel_const.m
| A	examples/octave_modular/kernel_diag.m
| A	examples/octave_modular/kernel_distance.m
| A	examples/octave_modular/kernel_fixeddegreestring.m
| A	examples/octave_modular/kernel_gaussian.m
| A	examples/octave_modular/kernel_gaussianshift.m
| A	examples/octave_modular/kernel_histogram.m
| A	examples/octave_modular/kernel_linear.m
| A	examples/octave_modular/kernel_linearbyte.m
| A	examples/octave_modular/kernel_linearstring.m
| A	examples/octave_modular/kernel_linearword.m
| A	examples/octave_modular/kernel_localalignmentstring.m
| A	examples/octave_modular/kernel_localityimprovedstring.m
| A	examples/octave_modular/kernel_matchwordstring.m
| A	examples/octave_modular/kernel_oligostring.m
| A	examples/octave_modular/kernel_poly.m
| A	examples/octave_modular/kernel_polymatchstring.m
| A	examples/octave_modular/kernel_polymatchwordstring.m
| A	examples/octave_modular/kernel_sigmoid.m
| A	examples/octave_modular/kernel_simplelocalityimprovedstring.m
| A	examples/octave_modular/kernel_sparsegaussian.m
| A	examples/octave_modular/kernel_sparselinear.m
| A	examples/octave_modular/kernel_sparsepoly.m
| A	examples/octave_modular/kernel_top.m
| A	examples/octave_modular/kernel_weightedcommwordstring.m
| A	examples/octave_modular/kernel_weighteddegreepositionstring.m
| A	examples/octave_modular/kernel_weighteddegreestring.m
| A	examples/octave_modular/preproc_commulongstring.m
| A	examples/octave_modular/preproc_commwordstring.m
| A	examples/octave_modular/preproc_logplusone.m
| A	examples/octave_modular/preproc_normone.m
| A	examples/octave_modular/preproc_prunevarsubmean.m
|  
* commit 7e1f0a25690a8e4fd3afc73273aa87b46a269b08
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 5 15:59:01 2009 +0000
| 
|     - move distance/kernelmachine into classifier
|     - add classify function for classifiers
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/libshogun/classifier/Classifier.h
| A	src/libshogun/classifier/DistanceMachine.cpp
| A	src/libshogun/classifier/DistanceMachine.h
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/classifier/KNN.h
| A	src/libshogun/classifier/KernelMachine.cpp
| A	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/KernelPerceptron.h
| M	src/libshogun/classifier/LinearClassifier.cpp
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/PluginEstimate.cpp
| M	src/libshogun/classifier/PluginEstimate.h
| M	src/libshogun/classifier/svm/SVM.h
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/clustering/Hierarchical.h
| M	src/libshogun/clustering/KMeans.h
| D	src/libshogun/distance/DistanceMachine.cpp
| D	src/libshogun/distance/DistanceMachine.h
| D	src/libshogun/kernel/KernelMachine.cpp
| D	src/libshogun/kernel/KernelMachine.h
| M	src/libshogun/regression/KRR.h
| M	src/libshogun/regression/svr/SVR_light.cpp
| M	src/modular/Classifier.i
| M	src/modular/Clustering.i
| M	src/modular/Regression.i
|  
* commit 215c37e3f39c17999d371a9d56cea8ab2df633b7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 5 13:22:37 2009 +0000
| 
|     fix errors in examples
| 
| M	examples/matlab_and_octave/classifier_perceptron.m
| M	examples/octave_modular/classifier_perceptron.m
| M	examples/r/classifier_libsvmoneclass.R
|  
* commit a6cb38ed94ecb05a2c426ce7f2dae3e10aa67709
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 5 13:07:27 2009 +0000
| 
|     fix comment
| 
| M	src/libshogun/regression/KRR.h
|  
* commit 4c0fc902ad91a0d9951613de26cd315eb912d009
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 5 11:04:41 2009 +0000
| 
|     polish remaining r r_modular examples
| 
| M	examples/r/classifier_gmnpsvm.R
| M	examples/r/classifier_gpbtsvm.R
| M	examples/r/classifier_knn.R
| M	examples/r/classifier_lda.R
| M	examples/r/classifier_libsvm.R
| M	examples/r/classifier_libsvmmulticlass.R
| M	examples/r/classifier_libsvmoneclass.R
| M	examples/r/classifier_mpdsvm.R
| M	examples/r/classifier_perceptron.R
| M	examples/r/classifier_svmlight.R
| M	examples/r/clustering_hierarchical.R
| M	examples/r/clustering_kmeans.R
| M	examples/r/distance_braycurtis.R
| M	examples/r/distance_canberra.R
| M	examples/r/distance_canberraword.R
| M	examples/r/distance_chebyshew.R
| M	examples/r/distance_chisquare.R
| M	examples/r/distance_cosine.R
| M	examples/r/distance_euclidian.R
| M	examples/r/distance_geodesic.R
| M	examples/r/distance_hammingword.R
| M	examples/r/distance_jensen.R
| M	examples/r/distance_manhatten.R
| M	examples/r/distance_manhattenword.R
| M	examples/r/distance_minkowski.R
| M	examples/r/distance_tanimoto.R
| M	examples/r/distribution_histogram.R
| M	examples/r/distribution_hmm.R
| M	examples/r/distribution_linearhmm.R
| M	examples/r/kernel_chi2.R
| M	examples/r/kernel_combined.R
| M	examples/r/kernel_commulongstring.R
| M	examples/r/kernel_commwordstring.R
| M	examples/r/kernel_const.R
| M	examples/r/kernel_diag.R
| M	examples/r/kernel_distancetokernel.R
| M	examples/r/kernel_fixeddegreestring.R
| M	examples/r/kernel_gaussian.R
| M	examples/r/kernel_gaussianshift.R
| M	examples/r/kernel_histogram.R
| M	examples/r/kernel_linear.R
| M	examples/r/kernel_linearstring.R
| M	examples/r/kernel_localalignmentstring.R
| M	examples/r/kernel_localityimprovedstring.R
| M	examples/r/kernel_oligostring.R
| M	examples/r/kernel_poly.R
| M	examples/r/kernel_polymatchstring.R
| M	examples/r/kernel_sigmoid.R
| M	examples/r/kernel_simplelocalityimprovedstring.R
| M	examples/r/kernel_weightedcommwordstring.R
| M	examples/r/kernel_weighteddegreepositionstring.R
| M	examples/r/kernel_weighteddegreestring.R
| M	examples/r/preproc_logplusone.R
| M	examples/r/preproc_normone.R
| M	examples/r/preproc_prunevarsubmean.R
| M	examples/r/preproc_sortulongstring.R
| M	examples/r/preproc_sortwordstring.R
| M	examples/r/regression_krr.R
| M	examples/r/regression_libsvr.R
| M	examples/r/regression_svrlight.R
| M	examples/r_modular/classifier_gmnpsvm.R
| M	examples/r_modular/classifier_gpbtsvm.R
| M	examples/r_modular/classifier_knn.R
| M	examples/r_modular/classifier_lda.R
| M	examples/r_modular/classifier_liblinear.R
| M	examples/r_modular/classifier_libsvm.R
| M	examples/r_modular/classifier_libsvmmulticlass.R
| M	examples/r_modular/classifier_libsvmoneclass.R
| M	examples/r_modular/classifier_mpdsvm.R
| M	examples/r_modular/classifier_perceptron.R
| M	examples/r_modular/classifier_subgradientsvm.R
| M	examples/r_modular/classifier_svmlight.R
| M	examples/r_modular/classifier_svmlin.R
| M	examples/r_modular/classifier_svmocas.R
| M	examples/r_modular/classifier_svmsgd.R
| M	examples/r_modular/distribution_histogram.R
| M	examples/r_modular/distribution_hmm.R
| M	examples/r_modular/distribution_linearhmm.R
| M	examples/r_modular/kernel_auc.R
| M	examples/r_modular/kernel_chi2.R
| M	examples/r_modular/kernel_combined.R
| M	examples/r_modular/kernel_commulongstring.R
| M	examples/r_modular/kernel_commwordstring.R
| M	examples/r_modular/kernel_const.R
| M	examples/r_modular/kernel_custom.R
| M	examples/r_modular/kernel_diag.R
| M	examples/r_modular/kernel_distancetokernel.R
| M	examples/r_modular/kernel_fixeddegreestring.R
| M	examples/r_modular/kernel_gaussian.R
| M	examples/r_modular/kernel_gaussianshift.R
| M	examples/r_modular/kernel_histogramword.R
| M	examples/r_modular/kernel_linear.R
| M	examples/r_modular/kernel_linearbyte.R
| M	examples/r_modular/kernel_linearstring.R
| M	examples/r_modular/kernel_linearword.R
| M	examples/r_modular/kernel_localalignmentstring.R
| M	examples/r_modular/kernel_localityimprovedstring.R
| M	examples/r_modular/kernel_oligostring.R
| M	examples/r_modular/kernel_poly.R
| M	examples/r_modular/kernel_polymatchstring.R
| M	examples/r_modular/kernel_polymatchword.R
| M	examples/r_modular/kernel_sigmoid.R
| M	examples/r_modular/kernel_simplelocalityimprovedstring.R
| M	examples/r_modular/kernel_sparsegaussian.R
| M	examples/r_modular/kernel_sparselinear.R
| M	examples/r_modular/kernel_sparsepoly.R
| M	examples/r_modular/kernel_topfisher.R
| M	examples/r_modular/kernel_weightedcommwordstring.R
| M	examples/r_modular/kernel_weighteddegreepositionstring.R
| M	examples/r_modular/kernel_weighteddegreestring.R
| M	examples/r_modular/kernel_wordmatch.R
| M	examples/r_modular/preproc_commulongstring.R
| M	examples/r_modular/preproc_commwordstring.R
| M	examples/r_modular/preproc_logplusone.R
| M	examples/r_modular/preproc_normone.R
| M	examples/r_modular/preproc_prunevarsubmean.R
|  
* commit c44539cc571e43304d1b101e9f03cb8408928745
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 17:26:41 2009 +0000
| 
|     update NEWS and use a more sane value for C
| 
| M	examples/matlab_and_octave/classifier_subgradientsvm.m
| M	examples/python_modular/classifier_liblinear.py
| M	examples/python_modular/classifier_subgradientsvm.py
| M	examples/python_modular/classifier_svmlin.py
| M	examples/python_modular/classifier_svmocas.py
| M	examples/python_modular/classifier_svmsgd.py
| M	examples/python_modular/regression_krr.py
| M	src/NEWS
|  
* commit 2966d4bc8fb54908204548c2e2cbcc18c888fd0f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 17:24:40 2009 +0000
| 
|     polish octave modular examples
| 
| M	examples/octave_modular/classifier_gmnpsvm.m
| M	examples/octave_modular/classifier_gpbtsvm.m
| M	examples/octave_modular/classifier_knn.m
| M	examples/octave_modular/classifier_lda.m
| M	examples/octave_modular/classifier_liblinear.m
| M	examples/octave_modular/classifier_libsvm.m
| M	examples/octave_modular/classifier_libsvmmulticlass.m
| M	examples/octave_modular/classifier_libsvmoneclass.m
| M	examples/octave_modular/classifier_mpdsvm.m
| M	examples/octave_modular/classifier_perceptron.m
| M	examples/octave_modular/classifier_subgradientsvm.m
| M	examples/octave_modular/classifier_svmlight.m
| M	examples/octave_modular/classifier_svmlin.m
| M	examples/octave_modular/classifier_svmocas.m
| M	examples/octave_modular/classifier_svmsgd.m
| M	examples/octave_modular/clustering_kmeans.m
| M	examples/octave_modular/distance_braycurtis.m
| M	examples/octave_modular/distance_canberra.m
| M	examples/octave_modular/distance_canberraword.m
| M	examples/octave_modular/distance_chebyshew.m
| M	examples/octave_modular/distance_chisquare.m
| M	examples/octave_modular/distance_cosine.m
| M	examples/octave_modular/distance_euclidian.m
| M	examples/octave_modular/distance_geodesic.m
| M	examples/octave_modular/distance_hammingword.m
| M	examples/octave_modular/distance_jensen.m
| M	examples/octave_modular/distance_manhatten.m
| M	examples/octave_modular/distance_manhattenword.m
| M	examples/octave_modular/distance_minkowski.m
| M	examples/octave_modular/distance_sparseeuclidian.m
| M	examples/octave_modular/distance_tanimoto.m
| M	examples/octave_modular/distribution_histogram.m
| M	examples/octave_modular/distribution_hmm.m
| M	examples/octave_modular/regression_krr.m
|  
* commit d09b1054a2a97d5f110007f371773e694d275c4f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 16:54:35 2009 +0000
| 
|     use larger C in example
| 
| M	examples/cmdline/classifier_gpbtsvm.sg
| M	examples/cmdline/classifier_knn.sg
| M	examples/cmdline/classifier_subgradientsvm.sg
| M	examples/octave_modular/classifier_gmnpsvm.m
| M	examples/octave_modular/classifier_gpbtsvm.m
| M	examples/octave_modular/classifier_libsvm.m
| M	examples/octave_modular/classifier_libsvmmulticlass.m
| M	examples/octave_modular/classifier_libsvmoneclass.m
| M	examples/octave_modular/classifier_mpdsvm.m
| M	examples/octave_modular/classifier_svmlight.m
| M	examples/octave_modular/regression_libsvr.m
| M	examples/octave_modular/regression_svrlight.m
| M	examples/python/classifier_gmnpsvm.py
| M	examples/python/classifier_gpbtsvm.py
| M	examples/python/classifier_libsvm.py
| M	examples/python/classifier_mpdsvm.py
| M	examples/python/classifier_svmlight.py
| M	examples/python/regression_krr.py
| M	examples/python/regression_libsvr.py
| M	examples/python/regression_svrlight.py
| M	examples/python_modular/classifier_svmlight.py
|  
* commit 393b192a0a9ec3f364452316e8c5da2b85165191
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 16:54:01 2009 +0000
| 
|     polish matlab/octave examples
| 
| M	examples/matlab_and_octave/classifier_gmnpsvm.m
| M	examples/matlab_and_octave/classifier_gpbtsvm.m
| M	examples/matlab_and_octave/classifier_knn.m
| M	examples/matlab_and_octave/classifier_lda.m
| M	examples/matlab_and_octave/classifier_liblinear.m
| M	examples/matlab_and_octave/classifier_libsvm.m
| M	examples/matlab_and_octave/classifier_libsvmmulticlass.m
| M	examples/matlab_and_octave/classifier_libsvmoneclass.m
| M	examples/matlab_and_octave/classifier_mpdsvm.m
| M	examples/matlab_and_octave/classifier_perceptron.m
| M	examples/matlab_and_octave/classifier_subgradientsvm.m
| M	examples/matlab_and_octave/classifier_svmlight.m
| M	examples/matlab_and_octave/classifier_svmlin.m
| M	examples/matlab_and_octave/classifier_svmocas.m
| M	examples/matlab_and_octave/classifier_svmsgd.m
| M	examples/matlab_and_octave/classifier_svmsgd_objective.m
| M	examples/matlab_and_octave/clustering_kmeans.m
| M	examples/matlab_and_octave/distance_braycurtis.m
| M	examples/matlab_and_octave/distance_canberra.m
| M	examples/matlab_and_octave/distance_canberraword.m
| M	examples/matlab_and_octave/distance_chebyshew.m
| M	examples/matlab_and_octave/distance_chisquare.m
| M	examples/matlab_and_octave/distance_cosine.m
| M	examples/matlab_and_octave/distance_euclidian.m
| M	examples/matlab_and_octave/distance_geodesic.m
| M	examples/matlab_and_octave/distance_hammingword.m
| M	examples/matlab_and_octave/distance_jensen.m
| M	examples/matlab_and_octave/distance_manhatten.m
| M	examples/matlab_and_octave/distance_manhattenword.m
| M	examples/matlab_and_octave/distance_minkowski.m
| M	examples/matlab_and_octave/distance_tanimoto.m
| M	examples/matlab_and_octave/distribution_hmm.m
| M	examples/matlab_and_octave/distribution_linearhmm.m
| M	examples/matlab_and_octave/features_dot_polynomial.m
| M	examples/matlab_and_octave/kernels_chi2.m
| M	examples/matlab_and_octave/kernels_combined.m
| M	examples/matlab_and_octave/kernels_commulongstring.m
| M	examples/matlab_and_octave/kernels_commwordstring.m
| M	examples/matlab_and_octave/kernels_const.m
| M	examples/matlab_and_octave/kernels_diag.m
| M	examples/matlab_and_octave/kernels_distance.m
| M	examples/matlab_and_octave/kernels_fixeddegreestring.m
| M	examples/matlab_and_octave/kernels_gaussian.m
| M	examples/matlab_and_octave/kernels_gaussianshift.m
| M	examples/matlab_and_octave/kernels_histogramword.m
| M	examples/matlab_and_octave/kernels_linear.m
| M	examples/matlab_and_octave/kernels_linearbyte.m
| M	examples/matlab_and_octave/kernels_linearstring.m
| M	examples/matlab_and_octave/kernels_linearword.m
| M	examples/matlab_and_octave/kernels_localalignmentstring.m
| M	examples/matlab_and_octave/kernels_localityimprovedstring.m
| M	examples/matlab_and_octave/kernels_oligostring.m
| M	examples/matlab_and_octave/kernels_poly.m
| M	examples/matlab_and_octave/kernels_polymatchstring.m
| M	examples/matlab_and_octave/kernels_polymatchword.m
| M	examples/matlab_and_octave/kernels_sigmoid.m
| M	examples/matlab_and_octave/kernels_simplelocalityimprovedstring.m
| M	examples/matlab_and_octave/kernels_sparsegaussian.m
| M	examples/matlab_and_octave/kernels_sparselinear.m
| M	examples/matlab_and_octave/kernels_sparsepoly.m
| M	examples/matlab_and_octave/kernels_weightedcommwordstring.m
| M	examples/matlab_and_octave/kernels_weighteddegreepositionstring.m
| M	examples/matlab_and_octave/kernels_weighteddegreestring.m
| M	examples/matlab_and_octave/regression_krr.m
| M	examples/matlab_and_octave/regression_libsvr.m
| M	examples/matlab_and_octave/regression_svrlight.m
|  
* commit e241a70f7fea3bd48d233cef60e312841b317c3c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 16:35:36 2009 +0000
| 
|     remove unused mindy define
| 
| M	src/libshogun/features/Features.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
|  
* commit 7206b842b825a270bec0f0f831a7187526582251
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 16:24:40 2009 +0000
| 
|     remove further mindy cruft
| 
| M	src/libshogunui/GUIKernel.cpp
| M	src/modular/Features.i
|  
* commit 6a52607d62437693d201b2106726b2680d41f30c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 16:06:13 2009 +0000
| 
|     remove mindy support
| 
| M	src/configure
| D	src/libshogun/features/MindyGramFeatures.cpp
| D	src/libshogun/features/MindyGramFeatures.h
| D	src/libshogun/kernel/MindyGramKernel.cpp
| D	src/libshogun/kernel/MindyGramKernel.h
| M	src/libshogunui/GUIFeatures.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/GUIKernel.h
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/Features.i
| M	src/modular/Kernel.i
|  
* commit 8cc996f2970c1c32ba04e72bad5ec0d9aeaed626
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Oct 2 16:05:17 2009 +0000
| 
|     unused variables removed and documentation added for new functions
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/IntronList.h
| M	src/libshogun/structure/SegmentLoss.h
|  
* commit 900b1cbc6cb25261f58a9f05379cfbd10a71776d
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Oct 2 16:05:14 2009 +0000
| 
|     -- two important bugfixes: suboptimal paths and invalid write
|        1. for the transition to the sequence_end state long transitions could not be
|           used since the corresponding table entry was computed after the maximization step
|           This resulted in suboptimal path predictions.
|        2. fixed invalid write in case of predictions that used all candidate positons
|           in their prediction path
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit ff4de9584a2225843451a57b2270798e771b6c26
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Oct 2 16:05:11 2009 +0000
| 
|     -- bugfix related to the dynamic programm with long transitions
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/IntronList.cpp
|  
* commit e226e8bd8b0c09f1313dbe932dba8dee6164e478
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Oct 2 16:05:03 2009 +0000
| 
|     some more debug output
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit cc74209b649d21b91a90608f6e46e6bcc918c1f9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 15:58:15 2009 +0000
| 
|     remove mindy support
| 
| M	src/configure
|  
* commit b1f06a5f2ea2c0dd9ea1d5d776d1698c0df0905c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 13:39:26 2009 +0000
| 
|     fix minor errors in configure that prevented octave to work on solaris
| 
| M	src/configure
|  
* commit 731d04abb8dec6336f551e37a7f62745bbed1c6c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 10:30:15 2009 +0000
| 
|     split up r_modular examples
| 
| D	examples/r_modular/all_kernels.R
| A	examples/r_modular/kernel_auc.R
| A	examples/r_modular/kernel_chi2.R
| A	examples/r_modular/kernel_combined.R
| A	examples/r_modular/kernel_commulongstring.R
| A	examples/r_modular/kernel_commwordstring.R
| A	examples/r_modular/kernel_const.R
| A	examples/r_modular/kernel_custom.R
| A	examples/r_modular/kernel_diag.R
| A	examples/r_modular/kernel_distancetokernel.R
| A	examples/r_modular/kernel_fixeddegreestring.R
| A	examples/r_modular/kernel_gaussian.R
| A	examples/r_modular/kernel_gaussianshift.R
| A	examples/r_modular/kernel_histogramword.R
| A	examples/r_modular/kernel_linear.R
| A	examples/r_modular/kernel_linearbyte.R
| A	examples/r_modular/kernel_linearstring.R
| A	examples/r_modular/kernel_linearword.R
| A	examples/r_modular/kernel_localalignmentstring.R
| A	examples/r_modular/kernel_localityimprovedstring.R
| A	examples/r_modular/kernel_oligostring.R
| A	examples/r_modular/kernel_poly.R
| A	examples/r_modular/kernel_polymatchstring.R
| A	examples/r_modular/kernel_polymatchword.R
| A	examples/r_modular/kernel_sigmoid.R
| A	examples/r_modular/kernel_simplelocalityimprovedstring.R
| A	examples/r_modular/kernel_sparsegaussian.R
| A	examples/r_modular/kernel_sparselinear.R
| A	examples/r_modular/kernel_sparsepoly.R
| A	examples/r_modular/kernel_topfisher.R
| A	examples/r_modular/kernel_weightedcommwordstring.R
| A	examples/r_modular/kernel_weighteddegreepositionstring.R
| A	examples/r_modular/kernel_weighteddegreestring.R
| A	examples/r_modular/kernel_wordmatch.R
|  
* commit 45cc5afb50d6cd3fcac63458f309db8f72523ab7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 09:17:05 2009 +0000
| 
|     split up r_modular examples
| 
| M	examples/octave_modular/kernel_custom.m
| D	examples/r_modular/all_clustering.R
| D	examples/r_modular/all_distance.R
| D	examples/r_modular/all_distribution.R
| D	examples/r_modular/all_preproc.R
| D	examples/r_modular/all_regression.R
| A	examples/r_modular/distribution_histogram.R
| A	examples/r_modular/distribution_hmm.R
| A	examples/r_modular/distribution_linearhmm.R
| A	examples/r_modular/preproc_commulongstring.R
| A	examples/r_modular/preproc_commwordstring.R
| A	examples/r_modular/preproc_logplusone.R
| A	examples/r_modular/preproc_normone.R
| A	examples/r_modular/preproc_prunevarsubmean.R
|  
* commit a9bed2656b8d406857f4779cda99575841329c25
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 06:33:12 2009 +0000
| 
|     fix accidental error killing cmdline interface i/o
| 
| M	src/cmdline/CmdLineInterface.cpp
|  
* commit 6c050f3a19447992306141b948e4e6c59b974ea7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 1 15:35:06 2009 +0000
| 
|     further example fixes
| 
| M	examples/libshogun/dyn_int.cpp
| M	examples/libshogun/gnmpmkl.cpp
| M	examples/python_modular/check_commwordkernel_memleak.py
| M	examples/r/classifier_gmnpsvm.R
| M	examples/r/classifier_gpbtsvm.R
| M	examples/r/classifier_libsvmmulticlass.R
| M	examples/r/classifier_libsvmoneclass.R
| M	examples/r/classifier_mpdsvm.R
| M	examples/r/kernel_histogram.R
| M	examples/r/preproc_normone.R
| M	examples/r/preproc_prunevarsubmean.R
|  
* commit a125aeea7f0825ccce5ece6a7342e28960f50020
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 1 15:23:39 2009 +0000
| 
|     fix examples
| 
| M	examples/matlab_and_octave/kernels_commulongstring.m
| M	examples/matlab_and_octave/kernels_commwordstring.m
| M	examples/matlab_and_octave/kernels_gaussian.m
| M	examples/matlab_and_octave/kernels_gaussianshift.m
| M	examples/matlab_and_octave/kernels_histogramword.m
| M	examples/matlab_and_octave/kernels_weightedcommwordstring.m
|  
* commit c50c630d31f1067efacdaf32ccf6e9de4e7afc3f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 30 22:25:30 2009 +0000
| 
|     further split up examples
| 
| D	examples/octave_modular/all_classifier.m
| D	examples/octave_modular/all_clustering.m
| D	examples/octave_modular/all_distance.m
| D	examples/octave_modular/all_distribution.m
| D	examples/octave_modular/all_kernels.m
| D	examples/octave_modular/all_preproc.m
| D	examples/octave_modular/all_regression.m
| A	examples/octave_modular/classifier_gmnpsvm.m
| A	examples/octave_modular/classifier_gpbtsvm.m
| A	examples/octave_modular/classifier_knn.m
| A	examples/octave_modular/classifier_lda.m
| A	examples/octave_modular/classifier_liblinear.m
| A	examples/octave_modular/classifier_libsvm.m
| A	examples/octave_modular/classifier_libsvmmulticlass.m
| A	examples/octave_modular/classifier_libsvmoneclass.m
| A	examples/octave_modular/classifier_mpdsvm.m
| A	examples/octave_modular/classifier_perceptron.m
| A	examples/octave_modular/classifier_subgradientsvm.m
| A	examples/octave_modular/classifier_svmlight.m
| A	examples/octave_modular/classifier_svmlin.m
| A	examples/octave_modular/classifier_svmocas.m
| A	examples/octave_modular/classifier_svmsgd.m
| A	examples/octave_modular/clustering_hierarchical.m
| A	examples/octave_modular/clustering_kmeans.m
| D	examples/octave_modular/custom_kernel.m
| A	examples/octave_modular/distance_braycurtis.m
| A	examples/octave_modular/distance_canberra.m
| A	examples/octave_modular/distance_canberraword.m
| A	examples/octave_modular/distance_chebyshew.m
| A	examples/octave_modular/distance_chisquare.m
| A	examples/octave_modular/distance_cosine.m
| A	examples/octave_modular/distance_euclidian.m
| A	examples/octave_modular/distance_geodesic.m
| A	examples/octave_modular/distance_hammingword.m
| A	examples/octave_modular/distance_jensen.m
| A	examples/octave_modular/distance_manhatten.m
| A	examples/octave_modular/distance_manhattenword.m
| A	examples/octave_modular/distance_minkowski.m
| A	examples/octave_modular/distance_sparseeuclidian.m
| A	examples/octave_modular/distance_tanimoto.m
| A	examples/octave_modular/distribution_histogram.m
| A	examples/octave_modular/distribution_hmm.m
| A	examples/octave_modular/distribution_linearhmm.m
| A	examples/octave_modular/kernel_custom.m
| A	examples/octave_modular/regression_krr.m
| A	examples/octave_modular/regression_libsvr.m
| A	examples/octave_modular/regression_svrlight.m
| D	examples/r/all_classifier.R
| D	examples/r/all_clustering.R
| D	examples/r/all_distance.R
| D	examples/r/all_distribution.R
| D	examples/r/all_kernels.R
| D	examples/r/all_preproc.R
| D	examples/r/all_regression.R
| A	examples/r/classifier_gmnpsvm.R
| A	examples/r/classifier_gpbtsvm.R
| A	examples/r/classifier_knn.R
| A	examples/r/classifier_lda.R
| A	examples/r/classifier_libsvm.R
| A	examples/r/classifier_libsvmmulticlass.R
| A	examples/r/classifier_libsvmoneclass.R
| A	examples/r/classifier_mpdsvm.R
| A	examples/r/classifier_perceptron.R
| A	examples/r/classifier_svmlight.R
| A	examples/r/clustering_hierarchical.R
| A	examples/r/clustering_kmeans.R
| A	examples/r/distance_braycurtis.R
| A	examples/r/distance_canberra.R
| A	examples/r/distance_canberraword.R
| A	examples/r/distance_chebyshew.R
| A	examples/r/distance_chisquare.R
| A	examples/r/distance_cosine.R
| A	examples/r/distance_euclidian.R
| A	examples/r/distance_geodesic.R
| A	examples/r/distance_hammingword.R
| A	examples/r/distance_jensen.R
| A	examples/r/distance_manhatten.R
| A	examples/r/distance_manhattenword.R
| A	examples/r/distance_minkowski.R
| A	examples/r/distance_tanimoto.R
| A	examples/r/distribution_histogram.R
| A	examples/r/distribution_hmm.R
| A	examples/r/distribution_linearhmm.R
| A	examples/r/kernel_chi2.R
| A	examples/r/kernel_combined.R
| A	examples/r/kernel_commulongstring.R
| A	examples/r/kernel_commwordstring.R
| A	examples/r/kernel_const.R
| A	examples/r/kernel_diag.R
| A	examples/r/kernel_distancetokernel.R
| A	examples/r/kernel_fixeddegreestring.R
| A	examples/r/kernel_gaussian.R
| A	examples/r/kernel_gaussianshift.R
| A	examples/r/kernel_histogram.R
| A	examples/r/kernel_linear.R
| A	examples/r/kernel_linearstring.R
| A	examples/r/kernel_localalignmentstring.R
| A	examples/r/kernel_localityimprovedstring.R
| A	examples/r/kernel_oligostring.R
| A	examples/r/kernel_poly.R
| A	examples/r/kernel_polymatchstring.R
| A	examples/r/kernel_sigmoid.R
| A	examples/r/kernel_simplelocalityimprovedstring.R
| A	examples/r/kernel_string.R
| A	examples/r/kernel_weightedcommwordstring.R
| A	examples/r/kernel_weighteddegreepositionstring.R
| A	examples/r/kernel_weighteddegreestring.R
| A	examples/r/mkl_wd.R
| A	examples/r/preproc_logplusone.R
| A	examples/r/preproc_normone.R
| A	examples/r/preproc_prunevarsubmean.R
| A	examples/r/preproc_sortulongstring.R
| A	examples/r/preproc_sortwordstring.R
| A	examples/r/regression_krr.R
| A	examples/r/regression_libsvr.R
| A	examples/r/regression_svrlight.R
| D	examples/r/string_kernel.R
| D	examples/r/wd_mkl.R
| D	examples/r_modular/all_classifier.R
| A	examples/r_modular/classifier_gmnpsvm.R
| A	examples/r_modular/classifier_gpbtsvm.R
| A	examples/r_modular/classifier_knn.R
| A	examples/r_modular/classifier_lda.R
| A	examples/r_modular/classifier_liblinear.R
| A	examples/r_modular/classifier_libsvm.R
| A	examples/r_modular/classifier_libsvmmulticlass.R
| A	examples/r_modular/classifier_libsvmoneclass.R
| A	examples/r_modular/classifier_mpdsvm.R
| A	examples/r_modular/classifier_perceptron.R
| A	examples/r_modular/classifier_subgradientsvm.R
| A	examples/r_modular/classifier_svmlight.R
| A	examples/r_modular/classifier_svmlin.R
| A	examples/r_modular/classifier_svmocas.R
| A	examples/r_modular/classifier_svmsgd.R
|  
* commit 900ebe74fca39a42026d067cceb22fadb2b40e9b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 30 16:31:05 2009 +0000
| 
|     fix error in octave detection script
| 
| M	src/configure
|  
* commit f298fa0a18b5e97b03dce665549b9199857b4391
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 30 16:17:36 2009 +0000
| 
|     get shogun (libshogun,libshgounui,cmdline) to compile under solaris again
| 
| M	src/Makefile
| M	src/cmdline/CmdLineInterface.cpp
| M	src/configure
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/PolyFeatures.cpp
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/lib/common.h
| M	src/libshogun/lib/io.cpp
| M	src/libshogun/lib/io.h
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit 51ac7f9e8d32db50127d48f9e206790b93070083
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 30 08:58:22 2009 +0000
| 
|     splitup matlab/octave examples
| 
| D	examples/matlab_and_octave/all_classifier.m
| D	examples/matlab_and_octave/all_clustering.m
| D	examples/matlab_and_octave/all_distance.m
| D	examples/matlab_and_octave/all_distribution.m
| D	examples/matlab_and_octave/all_kernels.m
| D	examples/matlab_and_octave/all_preproc.m
| D	examples/matlab_and_octave/all_regression.m
| A	examples/matlab_and_octave/classifier_gmnpsvm.m
| A	examples/matlab_and_octave/classifier_gpbtsvm.m
| A	examples/matlab_and_octave/classifier_knn.m
| A	examples/matlab_and_octave/classifier_lda.m
| A	examples/matlab_and_octave/classifier_liblinear.m
| A	examples/matlab_and_octave/classifier_liblinear_objective.m
| A	examples/matlab_and_octave/classifier_libsvm.m
| A	examples/matlab_and_octave/classifier_libsvmmulticlass.m
| A	examples/matlab_and_octave/classifier_libsvmoneclass.m
| A	examples/matlab_and_octave/classifier_lpboost.m
| A	examples/matlab_and_octave/classifier_lpm.m
| A	examples/matlab_and_octave/classifier_mpdsvm.m
| A	examples/matlab_and_octave/classifier_perceptron.m
| A	examples/matlab_and_octave/classifier_subgradientsvm.m
| A	examples/matlab_and_octave/classifier_svmlight.m
| A	examples/matlab_and_octave/classifier_svmlight_wdkernel.m
| A	examples/matlab_and_octave/classifier_svmlight_wds_batch.m
| A	examples/matlab_and_octave/classifier_svmlin.m
| A	examples/matlab_and_octave/classifier_svmocas.m
| A	examples/matlab_and_octave/classifier_svmocas_objective.m
| A	examples/matlab_and_octave/classifier_svmsgd.m
| A	examples/matlab_and_octave/classifier_svmsgd_objective.m
| A	examples/matlab_and_octave/clustering_hierarchical.m
| A	examples/matlab_and_octave/clustering_kmeans.m
| D	examples/matlab_and_octave/custom_kernel.m
| A	examples/matlab_and_octave/distance_braycurtis.m
| A	examples/matlab_and_octave/distance_canberra.m
| A	examples/matlab_and_octave/distance_canberraword.m
| A	examples/matlab_and_octave/distance_chebyshew.m
| A	examples/matlab_and_octave/distance_chisquare.m
| A	examples/matlab_and_octave/distance_cosine.m
| A	examples/matlab_and_octave/distance_euclidian.m
| A	examples/matlab_and_octave/distance_geodesic.m
| A	examples/matlab_and_octave/distance_hammingword.m
| A	examples/matlab_and_octave/distance_jensen.m
| A	examples/matlab_and_octave/distance_manhatten.m
| A	examples/matlab_and_octave/distance_manhattenword.m
| A	examples/matlab_and_octave/distance_minkowski.m
| A	examples/matlab_and_octave/distance_tanimoto.m
| A	examples/matlab_and_octave/distribution_histogram.m
| A	examples/matlab_and_octave/distribution_hmm.m
| A	examples/matlab_and_octave/distribution_linearhmm.m
| A	examples/matlab_and_octave/distribution_markovchain.m
| A	examples/matlab_and_octave/features_dot_polynomial.m
| A	examples/matlab_and_octave/features_dot_wdfeatures.m
| A	examples/matlab_and_octave/features_dot_weightedspec.m
| A	examples/matlab_and_octave/features_string.m
| A	examples/matlab_and_octave/kernels_chi2.m
| A	examples/matlab_and_octave/kernels_combined.m
| A	examples/matlab_and_octave/kernels_commulongstring.m
| A	examples/matlab_and_octave/kernels_commwordstring.m
| A	examples/matlab_and_octave/kernels_const.m
| A	examples/matlab_and_octave/kernels_custom.m
| A	examples/matlab_and_octave/kernels_diag.m
| A	examples/matlab_and_octave/kernels_distance.m
| A	examples/matlab_and_octave/kernels_fixeddegreestring.m
| A	examples/matlab_and_octave/kernels_gaussian.m
| A	examples/matlab_and_octave/kernels_gaussianshift.m
| A	examples/matlab_and_octave/kernels_histogramword.m
| A	examples/matlab_and_octave/kernels_lik.m
| A	examples/matlab_and_octave/kernels_linear.m
| A	examples/matlab_and_octave/kernels_linearbyte.m
| A	examples/matlab_and_octave/kernels_linearstring.m
| A	examples/matlab_and_octave/kernels_linearword.m
| A	examples/matlab_and_octave/kernels_localalignmentstring.m
| A	examples/matlab_and_octave/kernels_localityimprovedstring.m
| A	examples/matlab_and_octave/kernels_oligostring.m
| A	examples/matlab_and_octave/kernels_poly.m
| A	examples/matlab_and_octave/kernels_polymatchstring.m
| A	examples/matlab_and_octave/kernels_polymatchword.m
| A	examples/matlab_and_octave/kernels_sigmoid.m
| A	examples/matlab_and_octave/kernels_simplelocalityimprovedstring.m
| A	examples/matlab_and_octave/kernels_sparsegaussian.m
| A	examples/matlab_and_octave/kernels_sparselinear.m
| A	examples/matlab_and_octave/kernels_sparsepoly.m
| A	examples/matlab_and_octave/kernels_spectrum.m
| A	examples/matlab_and_octave/kernels_weighted_spec.m
| A	examples/matlab_and_octave/kernels_weightedcommwordstring.m
| A	examples/matlab_and_octave/kernels_weighteddegreepositionstring.m
| A	examples/matlab_and_octave/kernels_weighteddegreestring.m
| D	examples/matlab_and_octave/liblinear.m
| D	examples/matlab_and_octave/lik_kernel.m
| D	examples/matlab_and_octave/lpboost.m
| D	examples/matlab_and_octave/lpm.m
| D	examples/matlab_and_octave/markov_chain.m
| D	examples/matlab_and_octave/polynomial_kernel_dot_features.m
| A	examples/matlab_and_octave/regression_krr.m
| A	examples/matlab_and_octave/regression_libsvr.m
| A	examples/matlab_and_octave/regression_svrlight.m
| D	examples/matlab_and_octave/spec_kernel.m
| D	examples/matlab_and_octave/string_features.m
| D	examples/matlab_and_octave/svmocas.m
| D	examples/matlab_and_octave/svmsgd.m
| D	examples/matlab_and_octave/wd_and_dot_features.m
| D	examples/matlab_and_octave/wd_kernel.m
| D	examples/matlab_and_octave/wds_kernel.m
| D	examples/matlab_and_octave/weighted_spec.m
| D	examples/matlab_and_octave/weighted_spec_features.m
|  
* commit d8c95bb2c04350cb441c212713e718ff3dcdc739
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 30 06:24:39 2009 +0000
| 
|     get tests running again
| 
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/SGInterface.cpp
| M	testsuite/cmdline/test.sg
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/distance.m
| M	testsuite/matlab_and_octave/kernel.m
| M	testsuite/matlab_and_octave/preproc.m
| M	testsuite/matlab_and_octave/regression.m
| M	testsuite/matlab_and_octave/util/set_distance.m
| M	testsuite/matlab_and_octave/util/set_kernel.m
| M	testsuite/python/classifier.py
| M	testsuite/python/distance.py
| M	testsuite/python/kernel.py
| M	testsuite/python/preproc.py
| M	testsuite/python/regression.py
| M	testsuite/python/util.py
| M	testsuite/r/classifier.R
| M	testsuite/r/distance.R
| M	testsuite/r/kernel.R
| M	testsuite/r/preproc.R
| M	testsuite/r/regression.R
| M	testsuite/r/util/set_distance.R
| M	testsuite/r/util/set_kernel.R
|  
* commit 436fc760da9f8977fec442e9bf43aa27bbc7e253
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 29 16:53:47 2009 +0000
| 
|     fix examples for new interface / make KRR and custom kernel work again
| 
| M	examples/cmdline/distance_braycurtis.sg
| M	examples/cmdline/distance_canberra.sg
| M	examples/cmdline/distance_canberraword.sg
| M	examples/cmdline/distance_chebyshew.sg
| M	examples/cmdline/distance_chisquare.sg
| M	examples/cmdline/distance_cosine.sg
| M	examples/cmdline/distance_euclidean.sg
| M	examples/cmdline/distance_geodesic.sg
| M	examples/cmdline/distance_hammingword.sg
| M	examples/cmdline/distance_jensen.sg
| M	examples/cmdline/distance_manhatten.sg
| M	examples/cmdline/distance_manhattenword.sg
| M	examples/cmdline/distance_minkowski.sg
| M	examples/cmdline/distance_tanimoto.sg
| M	examples/matlab_and_octave/all_distance.m
| M	examples/matlab_and_octave/custom_kernel.m
| M	examples/matlab_and_octave/polynomial_kernel_dot_features.m
| M	examples/python/classifier_knn.py
| M	examples/python/distance_braycurtis.py
| M	examples/python/distance_canberra.py
| M	examples/python/distance_canberraword.py
| M	examples/python/distance_chebyshew.py
| M	examples/python/distance_chisquare.py
| M	examples/python/distance_cosine.py
| M	examples/python/distance_euclidian.py
| M	examples/python/distance_geodesic.py
| M	examples/python/distance_hammingword.py
| M	examples/python/distance_jensen.py
| M	examples/python/distance_manhatten.py
| M	examples/python/distance_manhattenword.py
| M	examples/python/distance_minkowski.py
| M	examples/python/distance_tanimoto.py
| M	examples/python/kernel_combined.py
| M	examples/python/kernel_distancetokernel.py
| M	examples/python_modular/classifier_svmlight.py
| M	examples/python_modular/classifier_svmlight_batch_linadd.py
| M	examples/python_modular/serialization_svmlight.py
| M	examples/r/all_distance.R
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIClassifier.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit 174c7b201377972647d26f65f7c210d72cbe3122
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Sep 26 12:48:27 2009 +0000
| 
|     split up python examples
| 
| A	examples/python/preproc_logplusone.py
| A	examples/python/preproc_normone.py
| A	examples/python/preproc_prunevarsubmean.py
| A	examples/python/preproc_sortulongstring.py
| A	examples/python/preproc_sortwordstring.py
| A	examples/python/regression_krr.py
| A	examples/python/regression_libsvr.py
| A	examples/python/regression_svrlight.py
|  
* commit 63f519062a281608cf167746f0845e0a67ebf2d3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Sep 26 11:58:18 2009 +0000
| 
|     get rid of the init_kernel commands and call get_kernel_matrix with additional TRAIN/TEST argument
| 
| M	examples/cmdline/classifier_gmnpsvm.sg
| M	examples/cmdline/classifier_gpbtsvm.sg
| M	examples/cmdline/classifier_knn.sg
| M	examples/cmdline/classifier_libsvm.sg
| M	examples/cmdline/classifier_libsvmmulticlass.sg
| M	examples/cmdline/classifier_libsvmoneclass.sg
| M	examples/cmdline/classifier_mpd.sg
| M	examples/cmdline/classifier_svmlight.sg
| M	examples/cmdline/clustering_hierarchical.sg
| M	examples/cmdline/clustering_kmeans.sg
| M	examples/cmdline/distance_braycurtis.sg
| M	examples/cmdline/distance_canberra.sg
| M	examples/cmdline/distance_canberraword.sg
| M	examples/cmdline/distance_chebyshew.sg
| M	examples/cmdline/distance_chisquare.sg
| M	examples/cmdline/distance_cosine.sg
| M	examples/cmdline/distance_euclidean.sg
| M	examples/cmdline/distance_geodesic.sg
| M	examples/cmdline/distance_hammingword.sg
| M	examples/cmdline/distance_jensen.sg
| M	examples/cmdline/distance_manhatten.sg
| M	examples/cmdline/distance_manhattenword.sg
| M	examples/cmdline/distance_minkowski.sg
| M	examples/cmdline/distance_tanimoto.sg
| M	examples/cmdline/kernel_chi2.sg
| M	examples/cmdline/kernel_combined.sg
| M	examples/cmdline/kernel_commulongstring.sg
| M	examples/cmdline/kernel_commwordstring.sg
| M	examples/cmdline/kernel_const.sg
| M	examples/cmdline/kernel_diag.sg
| M	examples/cmdline/kernel_distancetokernel.sg
| M	examples/cmdline/kernel_fixeddegreestring.sg
| M	examples/cmdline/kernel_gaussian.sg
| M	examples/cmdline/kernel_gaussianshift.sg
| M	examples/cmdline/kernel_linear.sg
| M	examples/cmdline/kernel_linearbyte.sg
| M	examples/cmdline/kernel_linearstring.sg
| M	examples/cmdline/kernel_linearword.sg
| M	examples/cmdline/kernel_localalignmentstring.sg
| M	examples/cmdline/kernel_localityimprovedstring.sg
| M	examples/cmdline/kernel_oligostring.sg
| M	examples/cmdline/kernel_poly.sg
| M	examples/cmdline/kernel_polymatchstring.sg
| M	examples/cmdline/kernel_polymatchword.sg
| M	examples/cmdline/kernel_sigmoid.sg
| M	examples/cmdline/kernel_simplelocalityimprovedstring.sg
| M	examples/cmdline/kernel_sparse_linear.sg
| M	examples/cmdline/kernel_sparsegaussian.sg
| M	examples/cmdline/kernel_sparsepoly.sg
| M	examples/cmdline/kernel_top.sg
| M	examples/cmdline/kernel_weightedcommwordstring.sg
| M	examples/cmdline/kernel_weighteddegreepositionstring.sg
| M	examples/cmdline/kernel_weighteddegreestring.sg
| M	examples/cmdline/libsvm.sg
| M	examples/cmdline/preproc_logplusone.sg
| M	examples/cmdline/preproc_normone.sg
| M	examples/cmdline/preproc_prunevarsubmean.sg
| M	examples/cmdline/preproc_sortulongstring.sg
| M	examples/cmdline/preproc_sortwordstring.sg
| M	examples/cmdline/regression_krr.sg
| M	examples/cmdline/regression_libsvr.sg
| M	examples/cmdline/regression_svrlight.sg
| M	examples/matlab_and_octave/all_classifier.m
| M	examples/matlab_and_octave/all_clustering.m
| M	examples/matlab_and_octave/all_distance.m
| M	examples/matlab_and_octave/all_kernels.m
| M	examples/matlab_and_octave/all_preproc.m
| M	examples/matlab_and_octave/all_regression.m
| M	examples/matlab_and_octave/graphical/cluster_hierarchical.m
| M	examples/matlab_and_octave/graphical/cluster_kmeans.m
| M	examples/matlab_and_octave/graphical/local_alignment_kernel.m
| M	examples/matlab_and_octave/graphical/mkl_pseudo_dna.m
| M	examples/matlab_and_octave/graphical/spec_interp.m
| M	examples/matlab_and_octave/graphical/svm_classification.m
| M	examples/matlab_and_octave/graphical/svm_multiclass.m
| M	examples/matlab_and_octave/graphical/svr_regression.m
| M	examples/matlab_and_octave/graphical/test_gnpp_svm.m
| M	examples/matlab_and_octave/graphical/test_poim_wds.m
| M	examples/matlab_and_octave/graphical/test_regression.m
| M	examples/matlab_and_octave/graphical/test_regression_mkl.m
| M	examples/matlab_and_octave/graphical/test_spec_interp.m
| M	examples/matlab_and_octave/graphical/test_svm_multiclass.m
| M	examples/matlab_and_octave/graphical/test_wd_wds_parallel.m
| M	examples/matlab_and_octave/graphical/wds_consensus.m
| M	examples/matlab_and_octave/graphical/wds_shift_interp.m
| M	examples/matlab_and_octave/lik_kernel.m
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
| M	examples/matlab_and_octave/mkl_regression_3sine_waves.m
| M	examples/matlab_and_octave/mkl_regression_sine.m
| M	examples/matlab_and_octave/polynomial_kernel_dot_features.m
| M	examples/matlab_and_octave/spec_kernel.m
| M	examples/matlab_and_octave/string_features.m
| M	examples/matlab_and_octave/tests/test_classifier.m
| M	examples/matlab_and_octave/tests/test_combined.m
| M	examples/matlab_and_octave/tests/test_combined2.m
| M	examples/matlab_and_octave/tests/test_complex_scenario.m
| M	examples/matlab_and_octave/tests/test_custom_kernel.m
| M	examples/matlab_and_octave/tests/test_kernel_optimization.m
| M	examples/matlab_and_octave/tests/test_knn.m
| M	examples/matlab_and_octave/tests/test_l2svm.m
| M	examples/matlab_and_octave/tests/test_linadd.m
| M	examples/matlab_and_octave/tests/test_mkl.m
| M	examples/matlab_and_octave/tests/test_mkl_svr.m
| M	examples/matlab_and_octave/tests/test_mkl_svr_wrapper.m
| M	examples/matlab_and_octave/tests/test_ocas_normalization.m
| M	examples/matlab_and_octave/tests/test_one_class_svm.m
| M	examples/matlab_and_octave/tests/test_regression_linadd.m
| M	examples/matlab_and_octave/tests/test_sliding_window.m
| M	examples/matlab_and_octave/tests/test_sparse_methods.m
| M	examples/matlab_and_octave/tests/test_spec_consensus.m
| M	examples/matlab_and_octave/tests/test_subgradsvm.m
| M	examples/matlab_and_octave/tests/test_svmlight_libsvm.m
| M	examples/matlab_and_octave/tests/test_svrlight_libsvr.m
| M	examples/matlab_and_octave/tests/test_tppk.m
| M	examples/matlab_and_octave/tests/test_wd_kernel.m
| M	examples/matlab_and_octave/tests/test_wd_linadd.m
| M	examples/matlab_and_octave/tests/test_wds_consensus.m
| M	examples/matlab_and_octave/tests/test_wds_kernel.m
| M	examples/matlab_and_octave/tests/test_wdshift_position_weights.m
| M	examples/matlab_and_octave/tests/test_weighted_spectrum.m
| M	examples/matlab_and_octave/wd_and_dot_features.m
| M	examples/matlab_and_octave/wd_kernel.m
| M	examples/matlab_and_octave/wds_kernel.m
| M	examples/matlab_and_octave/weighted_spec.m
| M	examples/matlab_and_octave/weighted_spec_features.m
| M	examples/python/classifier_gmnpsvm.py
| M	examples/python/classifier_gpbtsvm.py
| M	examples/python/classifier_knn.py
| M	examples/python/classifier_libsvmmulticlass.py
| M	examples/python/classifier_libsvmoneclass.py
| M	examples/python/classifier_mpdsvm.py
| M	examples/python/classifier_svmlight.py
| M	examples/python/clustering_hierarchical.py
| M	examples/python/clustering_kmeans.py
| M	examples/python/distance_braycurtis.py
| M	examples/python/distance_canberra.py
| M	examples/python/distance_canberraword.py
| M	examples/python/distance_chebyshew.py
| M	examples/python/distance_chisquare.py
| M	examples/python/distance_cosine.py
| M	examples/python/distance_euclidian.py
| M	examples/python/distance_geodesic.py
| M	examples/python/distance_hammingword.py
| M	examples/python/distance_jensen.py
| M	examples/python/distance_manhatten.py
| M	examples/python/distance_manhattenword.py
| M	examples/python/distance_minkowski.py
| M	examples/python/distance_tanimoto.py
| M	examples/python/graphical/svm_classification.py
| M	examples/python/graphical/svr_regression.py
| M	examples/python/kernel_chi2.py
| M	examples/python/kernel_combined.py
| M	examples/python/kernel_commulongstring.py
| M	examples/python/kernel_commwordstring.py
| M	examples/python/kernel_const.py
| M	examples/python/kernel_diag.py
| M	examples/python/kernel_distancetokernel.py
| M	examples/python/kernel_fixeddegreestring.py
| M	examples/python/kernel_gaussian.py
| M	examples/python/kernel_gaussianshift.py
| M	examples/python/kernel_linear.py
| M	examples/python/kernel_linear_string.py
| M	examples/python/kernel_linearbyte.py
| M	examples/python/kernel_linearword.py
| M	examples/python/kernel_localalignmentstring.py
| M	examples/python/kernel_localityimprovedstring.py
| M	examples/python/kernel_oligostring.py
| M	examples/python/kernel_pluginestimatehistogram.py
| M	examples/python/kernel_poly.py
| M	examples/python/kernel_polymatchstring.py
| M	examples/python/kernel_polymatchword.py
| M	examples/python/kernel_salzbergstring.py
| M	examples/python/kernel_sigmoid.py
| M	examples/python/kernel_simplelocalityimprovedstring.py
| M	examples/python/kernel_weightedcommwordstring.py
| M	examples/python/kernel_weighteddegreepositionstring.py
| M	examples/python/kernel_weighteddegreestring.py
| M	examples/python/test_mkl.py
| M	examples/r/all_classifier.R
| M	examples/r/all_clustering.R
| M	examples/r/all_distance.R
| M	examples/r/all_kernels.R
| M	examples/r/all_preproc.R
| M	examples/r/all_regression.R
| M	examples/r/graphical/svm_classification.R
| M	examples/r/graphical/svr_regression.R
| M	examples/r/mkl_classify_christmas_star.R
| M	examples/r/mkl_regression_3sine_waves.R
| M	examples/r/mkl_regression_sine.R
| M	examples/r/string_kernel.R
| M	examples/r/wd_mkl.R
|  
* commit f833266c93ee87f014a00bac22443aad09e08ae6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 25 12:47:16 2009 +0000
| 
|     - when training kernel/distance machines it is no longer necessary to call sg('init_kernel', 'TRAIN') or 'TEST'. this is now done internally.
|     - sg('get_kernel_matrix') now has an extra argument, i.e. sg('get_kernel_matrix', 'TRAIN')
|     - remove the unused {load,save}_{kernel,distance}_init functions in Kernels and Distances
|     - move the mkl Code into libshogun/classifier/mkl
|     - integrate the new structure code into python
|     - add a macro to display a deprecated message ( SG_DEPRECATED )
| 
| M	examples/python/classifier_libsvm.py
| M	examples/python/kernel_chi2.py
| M	src/NEWS
| A	src/libshogun/classifier/mkl/MKL.cpp
| A	src/libshogun/classifier/mkl/MKL.h
| A	src/libshogun/classifier/mkl/MKLClassification.cpp
| A	src/libshogun/classifier/mkl/MKLClassification.h
| A	src/libshogun/classifier/mkl/MKLMulticlass.h
| A	src/libshogun/classifier/mkl/MKLOneClass.cpp
| A	src/libshogun/classifier/mkl/MKLOneClass.h
| D	src/libshogun/classifier/svm/MKL.cpp
| D	src/libshogun/classifier/svm/MKL.h
| D	src/libshogun/classifier/svm/MKLClassification.cpp
| D	src/libshogun/classifier/svm/MKLClassification.h
| D	src/libshogun/classifier/svm/MKLMulticlass.h
| D	src/libshogun/classifier/svm/MKLOneClass.cpp
| D	src/libshogun/classifier/svm/MKLOneClass.h
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/distance/BrayCurtisDistance.cpp
| M	src/libshogun/distance/BrayCurtisDistance.h
| M	src/libshogun/distance/CanberraMetric.cpp
| M	src/libshogun/distance/CanberraMetric.h
| M	src/libshogun/distance/CanberraWordDistance.cpp
| M	src/libshogun/distance/CanberraWordDistance.h
| M	src/libshogun/distance/ChebyshewMetric.cpp
| M	src/libshogun/distance/ChebyshewMetric.h
| M	src/libshogun/distance/ChiSquareDistance.cpp
| M	src/libshogun/distance/ChiSquareDistance.h
| M	src/libshogun/distance/CosineDistance.cpp
| M	src/libshogun/distance/CosineDistance.h
| M	src/libshogun/distance/Distance.h
| M	src/libshogun/distance/EuclidianDistance.cpp
| M	src/libshogun/distance/EuclidianDistance.h
| M	src/libshogun/distance/GeodesicMetric.cpp
| M	src/libshogun/distance/GeodesicMetric.h
| M	src/libshogun/distance/HammingWordDistance.cpp
| M	src/libshogun/distance/HammingWordDistance.h
| M	src/libshogun/distance/JensenMetric.cpp
| M	src/libshogun/distance/JensenMetric.h
| M	src/libshogun/distance/ManhattanMetric.cpp
| M	src/libshogun/distance/ManhattanMetric.h
| M	src/libshogun/distance/ManhattanWordDistance.cpp
| M	src/libshogun/distance/ManhattanWordDistance.h
| M	src/libshogun/distance/MinkowskiMetric.cpp
| M	src/libshogun/distance/MinkowskiMetric.h
| M	src/libshogun/distance/SparseEuclidianDistance.cpp
| M	src/libshogun/distance/SparseEuclidianDistance.h
| M	src/libshogun/distance/TanimotoDistance.cpp
| M	src/libshogun/distance/TanimotoDistance.h
| M	src/libshogun/kernel/AUCKernel.cpp
| M	src/libshogun/kernel/AUCKernel.h
| M	src/libshogun/kernel/Chi2Kernel.cpp
| M	src/libshogun/kernel/Chi2Kernel.h
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/kernel/CommUlongStringKernel.cpp
| M	src/libshogun/kernel/CommUlongStringKernel.h
| M	src/libshogun/kernel/CommWordStringKernel.cpp
| M	src/libshogun/kernel/CommWordStringKernel.h
| M	src/libshogun/kernel/ConstKernel.cpp
| M	src/libshogun/kernel/ConstKernel.h
| M	src/libshogun/kernel/CustomKernel.cpp
| M	src/libshogun/kernel/CustomKernel.h
| M	src/libshogun/kernel/DiagKernel.cpp
| M	src/libshogun/kernel/DiagKernel.h
| M	src/libshogun/kernel/DistanceKernel.cpp
| M	src/libshogun/kernel/DistanceKernel.h
| M	src/libshogun/kernel/FixedDegreeStringKernel.cpp
| M	src/libshogun/kernel/FixedDegreeStringKernel.h
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/GaussianShortRealKernel.cpp
| M	src/libshogun/kernel/GaussianShortRealKernel.h
| M	src/libshogun/kernel/HistogramWordStringKernel.cpp
| M	src/libshogun/kernel/HistogramWordStringKernel.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/LinearByteKernel.cpp
| M	src/libshogun/kernel/LinearByteKernel.h
| M	src/libshogun/kernel/LinearKernel.cpp
| M	src/libshogun/kernel/LinearKernel.h
| M	src/libshogun/kernel/LinearStringKernel.cpp
| M	src/libshogun/kernel/LinearStringKernel.h
| M	src/libshogun/kernel/LinearWordKernel.cpp
| M	src/libshogun/kernel/LinearWordKernel.h
| M	src/libshogun/kernel/LocalAlignmentStringKernel.h
| M	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/LocalityImprovedStringKernel.h
| M	src/libshogun/kernel/MatchWordStringKernel.cpp
| M	src/libshogun/kernel/MatchWordStringKernel.h
| M	src/libshogun/kernel/MindyGramKernel.cpp
| M	src/libshogun/kernel/MindyGramKernel.h
| M	src/libshogun/kernel/OligoStringKernel.h
| M	src/libshogun/kernel/PolyKernel.cpp
| M	src/libshogun/kernel/PolyKernel.h
| M	src/libshogun/kernel/PolyMatchStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchStringKernel.h
| M	src/libshogun/kernel/PolyMatchWordStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchWordStringKernel.h
| M	src/libshogun/kernel/PyramidChi2.cpp
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.h
| M	src/libshogun/kernel/SalzbergWordStringKernel.cpp
| M	src/libshogun/kernel/SalzbergWordStringKernel.h
| M	src/libshogun/kernel/SigmoidKernel.cpp
| M	src/libshogun/kernel/SigmoidKernel.h
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/libshogun/kernel/SparseGaussianKernel.cpp
| M	src/libshogun/kernel/SparseGaussianKernel.h
| M	src/libshogun/kernel/SparseLinearKernel.cpp
| M	src/libshogun/kernel/SparseLinearKernel.h
| M	src/libshogun/kernel/SparsePolyKernel.cpp
| M	src/libshogun/kernel/SparsePolyKernel.h
| M	src/libshogun/kernel/TensorProductPairKernel.cpp
| M	src/libshogun/kernel/TensorProductPairKernel.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
| M	src/libshogun/lib/io.h
| M	src/libshogun/regression/svr/MKLRegression.h
| M	src/libshogun/structure/IntronList.h
| M	src/libshogun/structure/SegmentLoss.h
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/GUIDistance.cpp
| M	src/libshogunui/GUIDistance.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/GUIKernel.h
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/Classifier.i
| M	src/modular/Regression.i
| M	src/modular/Structure.i
|  
* commit ef730d71a63b58e3671d0f14d16a06a9e074fab0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 24 05:52:49 2009 +0000
| 
|     target news :)
| 
| M	src/NEWS
|  
* commit ded74dc80d00f836b037fe5a9de1726f915d1d34
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Wed Sep 23 18:31:26 2009 +0000
| 
|     example for serialization
| 
| A	examples/python_modular/serialization_svmlight.py
| A	src/libshogun/features/StringFeatures.cpp
|  
* commit d4ef791f80975b4d38b99b839faa6919501946c3
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Wed Sep 23 18:29:23 2009 +0000
| 
|     awesome. Serialization merged successfully (at least for some classes).
| 
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVM.h
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/SVM_light.h
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/RealFileFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/KernelMachine.cpp
| M	src/libshogun/kernel/KernelMachine.h
| M	src/libshogun/kernel/SimpleKernel.h
| M	src/libshogun/kernel/StringKernel.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
|  
* commit 3afe2b797fca452991ac469b3071072b716c3006
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Wed Sep 23 16:13:54 2009 +0000
| 
|     Initial version of serialization support for Alphabet and StringFeatures
| 
| M	src/.generate_link_dependencies.py
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/StringFeatures.h
| M	src/modular/SGBase.i
|  
* commit c78fcf6762352f163abf28e47b24378882d3d042
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 23 13:27:41 2009 +0000
| 
|     add option to set linear term in svm light
| 
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/SVM_light.h
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/regression/svr/SVR_light.cpp
| M	src/libshogun/regression/svr/SVR_light.h
| M	src/modular/Classifier.i
|  
* commit 3796a1c3191ba6ff749a73e6b9a778eef2a57b62
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 22 14:34:17 2009 +0000
| 
|     fix a number of integer range overflows in perf measures
| 
| M	src/libshogun/evaluation/PerformanceMeasures.cpp
| M	src/libshogun/evaluation/PerformanceMeasures.h
|  
* commit 6efe6243571c2a75e9ad1e9cd94c707afd3c06f1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 22 10:33:35 2009 +0000
| 
|     fix bug in configure ignoring --cxx and --cc options
| 
| M	src/configure
|  
* commit 638c940c583ae52e63cc3f6c5b3ad244ce0b7afb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 21 17:01:39 2009 +0000
| 
|     fixes for testing rule
| 
| M	src/libshogun/classifier/svm/MCSVM.cpp
| M	src/libshogun/classifier/svm/MCSVM.h
|  
* commit c36f5024d5b77760b4acb1dbaa0c2bff66d81b5a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 21 13:25:38 2009 +0000
| 
|     space between ! and darwin
| 
| M	src/configure
|  
* commit 114a659dd19244333a747f04cb19404b38c60ce6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 21 13:13:21 2009 +0000
| 
|     update NEWS/README
| 
| M	README
| M	src/NEWS
|  
* commit 91f355d11b8a0dd44c493f18b29021ba11de6699
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 21 13:11:02 2009 +0000
| 
|     split up python examples
| 
| D	examples/python/all_classifier.py
| D	examples/python/all_clustering.py
| D	examples/python/all_distance.py
| D	examples/python/all_distribution.py
| D	examples/python/all_kernels.py
| D	examples/python/all_preproc.py
| D	examples/python/all_regression.py
| A	examples/python/classifier_gmnpsvm.py
| A	examples/python/classifier_gpbtsvm.py
| A	examples/python/classifier_knn.py
| A	examples/python/classifier_lda.py
| A	examples/python/classifier_libsvm.py
| A	examples/python/classifier_libsvmmulticlass.py
| A	examples/python/classifier_libsvmoneclass.py
| A	examples/python/classifier_mpdsvm.py
| A	examples/python/classifier_perceptron.py
| A	examples/python/classifier_svmlight.py
| A	examples/python/clustering_hierarchical.py
| A	examples/python/clustering_kmeans.py
| A	examples/python/distance_braycurtis.py
| A	examples/python/distance_canberra.py
| A	examples/python/distance_canberraword.py
| A	examples/python/distance_chebyshew.py
| A	examples/python/distance_chisquare.py
| A	examples/python/distance_cosine.py
| A	examples/python/distance_euclidian.py
| A	examples/python/distance_geodesic.py
| A	examples/python/distance_hammingword.py
| A	examples/python/distance_jensen.py
| A	examples/python/distance_manhatten.py
| A	examples/python/distance_manhattenword.py
| A	examples/python/distance_minkowski.py
| A	examples/python/distance_tanimoto.py
| A	examples/python/distribution_histogram.py
| A	examples/python/distribution_hmm.py
| A	examples/python/distribution_linearhmm.py
| A	examples/python/kernel_chi2.py
| A	examples/python/kernel_combined.py
| A	examples/python/kernel_commulongstring.py
| A	examples/python/kernel_commwordstring.py
| A	examples/python/kernel_const.py
| A	examples/python/kernel_diag.py
| A	examples/python/kernel_distancetokernel.py
| A	examples/python/kernel_fixeddegreestring.py
| A	examples/python/kernel_gaussian.py
| A	examples/python/kernel_gaussianshift.py
| A	examples/python/kernel_linear.py
| A	examples/python/kernel_linear_string.py
| A	examples/python/kernel_linearbyte.py
| A	examples/python/kernel_linearword.py
| A	examples/python/kernel_localalignmentstring.py
| A	examples/python/kernel_localityimprovedstring.py
| A	examples/python/kernel_oligostring.py
| A	examples/python/kernel_pluginestimatehistogram.py
| A	examples/python/kernel_poly.py
| A	examples/python/kernel_polymatchstring.py
| A	examples/python/kernel_polymatchword.py
| A	examples/python/kernel_salzbergstring.py
| A	examples/python/kernel_sigmoid.py
| A	examples/python/kernel_simplelocalityimprovedstring.py
| A	examples/python/kernel_weightedcommwordstring.py
| A	examples/python/kernel_weighteddegreepositionstring.py
| A	examples/python/kernel_weighteddegreestring.py
|  
* commit 292c8cd77a14d6e4e393a732fabd5a1fb3a6dea9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 21 11:54:16 2009 +0000
| 
|     split up examples from all_* into separate files
| 
| D	examples/cmdline/all_classifier.sg
| D	examples/cmdline/all_clustering.sg
| D	examples/cmdline/all_distance.sg
| D	examples/cmdline/all_distribution.sg
| D	examples/cmdline/all_kernels.sg
| D	examples/cmdline/all_preproc.sg
| D	examples/cmdline/all_regression.sg
| A	examples/cmdline/classifier_gmnpsvm.sg
| A	examples/cmdline/classifier_gpbtsvm.sg
| A	examples/cmdline/classifier_knn.sg
| A	examples/cmdline/classifier_lda.sg
| A	examples/cmdline/classifier_liblinear.sg
| A	examples/cmdline/classifier_libsvm.sg
| A	examples/cmdline/classifier_libsvmmulticlass.sg
| A	examples/cmdline/classifier_libsvmoneclass.sg
| A	examples/cmdline/classifier_mpd.sg
| A	examples/cmdline/classifier_perceptron.sg
| A	examples/cmdline/classifier_subgradientsvm.sg
| A	examples/cmdline/classifier_svmlight.sg
| A	examples/cmdline/classifier_svmlin.sg
| A	examples/cmdline/classifier_svmocas.sg
| A	examples/cmdline/classifier_svmsgd.sg
| A	examples/cmdline/clustering_hierarchical.sg
| A	examples/cmdline/clustering_kmeans.sg
| A	examples/cmdline/distance_braycurtis.sg
| A	examples/cmdline/distance_canberra.sg
| A	examples/cmdline/distance_canberraword.sg
| A	examples/cmdline/distance_chebyshew.sg
| A	examples/cmdline/distance_chisquare.sg
| A	examples/cmdline/distance_cosine.sg
| A	examples/cmdline/distance_euclidean.sg
| A	examples/cmdline/distance_geodesic.sg
| A	examples/cmdline/distance_hammingword.sg
| A	examples/cmdline/distance_jensen.sg
| A	examples/cmdline/distance_manhatten.sg
| A	examples/cmdline/distance_manhattenword.sg
| A	examples/cmdline/distance_minkowski.sg
| A	examples/cmdline/distance_tanimoto.sg
| A	examples/cmdline/distribution_histogram.sg
| A	examples/cmdline/distribution_hmm.sg
| A	examples/cmdline/distribution_linearhmm.sg
| A	examples/cmdline/kernel_chi2.sg
| A	examples/cmdline/kernel_combined.sg
| A	examples/cmdline/kernel_commulongstring.sg
| A	examples/cmdline/kernel_commwordstring.sg
| A	examples/cmdline/kernel_const.sg
| A	examples/cmdline/kernel_diag.sg
| A	examples/cmdline/kernel_distancetokernel.sg
| A	examples/cmdline/kernel_fixeddegreestring.sg
| A	examples/cmdline/kernel_gaussian.sg
| A	examples/cmdline/kernel_gaussianshift.sg
| A	examples/cmdline/kernel_linear.sg
| A	examples/cmdline/kernel_linearbyte.sg
| A	examples/cmdline/kernel_linearstring.sg
| A	examples/cmdline/kernel_linearword.sg
| A	examples/cmdline/kernel_localalignmentstring.sg
| A	examples/cmdline/kernel_localityimprovedstring.sg
| A	examples/cmdline/kernel_oligostring.sg
| A	examples/cmdline/kernel_poly.sg
| A	examples/cmdline/kernel_polymatchstring.sg
| A	examples/cmdline/kernel_polymatchword.sg
| A	examples/cmdline/kernel_sigmoid.sg
| A	examples/cmdline/kernel_simplelocalityimprovedstring.sg
| A	examples/cmdline/kernel_sparse_linear.sg
| A	examples/cmdline/kernel_sparsegaussian.sg
| A	examples/cmdline/kernel_sparsepoly.sg
| A	examples/cmdline/kernel_top.sg
| A	examples/cmdline/kernel_weightedcommwordstring.sg
| A	examples/cmdline/kernel_weighteddegreepositionstring.sg
| A	examples/cmdline/kernel_weighteddegreestring.sg
| A	examples/cmdline/preproc_logplusone.sg
| A	examples/cmdline/preproc_normone.sg
| A	examples/cmdline/preproc_prunevarsubmean.sg
| A	examples/cmdline/preproc_sortulongstring.sg
| A	examples/cmdline/preproc_sortwordstring.sg
| A	examples/cmdline/regression_krr.sg
| A	examples/cmdline/regression_libsvr.sg
| A	examples/cmdline/regression_svrlight.sg
|  
* commit 621a6542449ae5011f75b1ccad6da34ddc0d5858
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 21 10:26:59 2009 +0000
| 
|     implement new testing rule for mcsvm (using bias)
| 
| M	src/libshogun/classifier/svm/MCSVM.cpp
| M	src/libshogun/classifier/svm/MCSVM.h
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.h
|  
* commit 19c45540c0b4b76a53bf614d7b7a36ffd4458607
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Sep 20 18:11:40 2009 +0000
| 
|     don't use wordsize = 64bit on darwin/leopard
| 
| M	src/configure
|  
* commit 8df40f5308a6abc53a05535b42e9dba8da9ffd61
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 17 20:42:21 2009 +0000
| 
|     enable bias computation in mcsvm prepare other libsvm based svms for disabling bias
| 
| M	src/libshogun/classifier/svm/LibSVM.cpp
| M	src/libshogun/classifier/svm/LibSVMMultiClass.cpp
| M	src/libshogun/classifier/svm/LibSVMOneClass.cpp
| M	src/libshogun/classifier/svm/MCSVM.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.h
| M	src/libshogun/regression/svr/LibSVR.cpp
|  
* commit ee0716c045a7e470d2dfb41c97412407905c3876
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 17 16:57:36 2009 +0000
| 
|     implement correct bias and objective computation for mcsvm
| 
| M	src/NEWS
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
|  
* commit aa5da1aa23c8f8f071574da30b37d0c84740d3dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 17 15:25:04 2009 +0000
| 
|     remove debug code
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit 5093cf7b986b5a19b388708b9e013c58c5cf59d9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 15 16:06:42 2009 +0000
| 
|     add further progress output
| 
| M	src/libshogun/classifier/svm/MCSVM.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
|  
* commit 2b1f7adb153323c408dee9f2b698efb463b16c3f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 15 13:05:15 2009 +0000
| 
|     remove obsolete calculations of Gmaxn*
| 
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
|  
* commit a884cb0aa0cd37730cc476b839a00299bea301f0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Sep 13 04:58:49 2009 +0000
| 
|     revert include path fix / it was correct
| 
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
|  
* commit 84a4f05d56ac6d449cdbdb0ea2b98322eb2665dc
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Sep 10 14:34:59 2009 +0000
| 
|     * bug fix in dp related to long transitions and loss
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit 5332fa76d0ea1506a2801ae1fc8985be90df8792
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Sep 8 06:50:52 2009 +0000
| 
|     enable long transitions for auxiliary data in feature generation function
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit 447a1f689a49a1e8cf94865a4288b611f3e90f81
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Sep 8 06:50:48 2009 +0000
| 
|     Revert "changed type of linear features from float64 to float32  to save mem"
|     
|     This reverts commit 81a6816cda389a2e52ac5f0f9fee7ce820980b94.
|     
|     Conflicts:
|     
|     	trunk/src/libshogun/structure/DynProg.cpp
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogun/structure/SegmentLoss.cpp
| M	src/libshogun/structure/SegmentLoss.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit d7da188b0bf81746f916027c064d2d264c6b1c82
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Sep 8 06:50:44 2009 +0000
| 
|     fix invalid write
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit fc4517acccd1a18ab3a7abd2432de586bd1cdcf7
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Sat Sep 5 16:10:26 2009 +0000
| 
|     changed type of lineat features from float64 to float32  to save mem
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogun/structure/SegmentLoss.cpp
| M	src/libshogun/structure/SegmentLoss.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit a6d582b202a78c1662f9e6ea5c49b38f1f055be1
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Sep 4 07:23:47 2009 +0000
| 
|     -- new sg interface function for settings related to the long transition approximation
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit 5d1d696117e398a5b2f310d17d71d7e6f6c91262
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Sep 3 20:40:12 2009 +0000
| 
|     * solved the segment loss additivity problem
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/SegmentLoss.h
|  
* commit 3da1ec245e73a33002d2774fbe366e32efce45a6
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Sep 2 13:53:06 2009 +0000
| 
|     * fixed bug in debug code
|     * still non-additivity issues in loss
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/SegmentLoss.cpp
| M	src/libshogun/structure/SegmentLoss.h
|  
* commit e28d829cb060546e44b2b40598330c59cdd36544
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Sep 2 13:41:11 2009 +0000
| 
|     seems to work now
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit b2c7a74443e2a3f89a9d5d9afd6e7118608c8b90
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Sep 2 13:13:52 2009 +0000
| 
|     * long introns should work without loss
|     * still some additivity issues with the segment loss
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/SegmentLoss.cpp
|  
* commit b92a8444673932350ff29d017cd86362544771ca
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Sep 2 12:35:56 2009 +0000
| 
|     -- segment loss is now additive, at least for my small example
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/SegmentLoss.cpp
|  
* commit 802a8d8f975d31e0ef380d11709213b4feaab0b0
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Sep 2 10:28:20 2009 +0000
| 
|     pre cleanup
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit 0226bd46389e56bdb5e1846f2da4b29b63472b74
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Sep 1 22:36:57 2009 +0000
| 
|     * version with long introns. Tested for a few cases without loss
|     * still inconsistent when using loss
|     
|     * fixed some minor issues in BitString.h (a while ago)
| 
| M	src/libshogun/lib/BitString.h
| M	src/libshogun/structure/DynProg.cpp
|  
* commit 2924a7722bd28162fe4374f42bd61276ef0e83ef
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Sep 1 17:58:03 2009 +0000
| 
|     -- segment loss seems to be OK now
|        the prediction for my example was the same, but
|        the loss is slightly different (110 vs. 108)
|        only one example tested
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/SegmentLoss.cpp
|  
* commit 65e0060e97c154ea999990d4f2eb6ec3bd38dfce
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Sep 1 17:57:59 2009 +0000
| 
|     -- some more debug code
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/SegmentLoss.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit 3cbb4c168c91a77e0e76bd0bfeb59336756fbb1a
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Sep 1 17:57:56 2009 +0000
| 
|     -- new loss calculation leads to similar but not equal results
|        still some bugs left
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogun/structure/SegmentLoss.cpp
| M	src/libshogun/structure/SegmentLoss.h
| M	src/libshogunui/SGInterface.cpp
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
|  
* commit 14027855057c2753a6957df3be19652d277dc0f9
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Sep 1 17:57:52 2009 +0000
| 
|     -- main functionality is there
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogun/structure/SegmentLoss.cpp
| M	src/libshogun/structure/SegmentLoss.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit 736fb9b94575ac744d03612f8d43b35bc48e7359
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Sep 1 17:57:47 2009 +0000
| 
|     -- precompute segment loss and move code for that to a new class
| 
| M	src/libshogun/structure/DynProg.cpp
| A	src/libshogun/structure/SegmentLoss.cpp
| A	src/libshogun/structure/SegmentLoss.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit df49d253e6e5d5e5c4cdc9f977c0f6703ce2532b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 28 11:43:07 2009 +0000
| 
|     revert path changes. they are indeed correct
| 
| M	src/matlab/MatlabInterface.cpp
| M	src/matlab/MatlabInterface.h
|  
* commit 686bb38fdadc08da38716724f2e4888d9bfb1cad
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Aug 28 10:25:59 2009 +0000
| 
|     adapted paths of header files
| 
| M	src/matlab/MatlabInterface.cpp
| M	src/matlab/MatlabInterface.h
|  
* commit ce86723ad738076987e25636c642a43babf737cd
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Aug 25 13:25:05 2009 +0000
| 
|     -- the dot feature for the polynomial kernel can now be normalized
| 
| M	examples/matlab_and_octave/polynomial_kernel_dot_features.m
| M	src/libshogun/features/PolyFeatures.cpp
| M	src/libshogun/features/PolyFeatures.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit 31b6bb540b902c3047266e964aea8d6cfc9c7cf8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 25 10:53:51 2009 +0000
| 
|     impl. get_features for other dot_features
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit 730eaf54c57a094fcbba85024f3c203e8b9a8b0d
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Aug 25 09:57:45 2009 +0000
| 
|     -- implemented dot feature for polynomial kernel
| 
| A	examples/matlab_and_octave/polynomial_kernel_dot_features.m
| M	src/libshogun/features/Features.h
| A	src/libshogun/features/PolyFeatures.cpp
| A	src/libshogun/features/PolyFeatures.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/modular/Features.i
|  
* commit ca03e98ceedc28e43e069d60752c8e03b94462d7
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Aug 25 09:57:42 2009 +0000
| 
|     -- some needless code removed
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit 80e88db8fda13145ea7a9b8055890992af7696cf
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Aug 25 09:57:38 2009 +0000
| 
|     -- several mem leaks fixed
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit d0445800bc10bfe0ea42a4d9d7352d66c8b8953f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Aug 24 14:10:21 2009 +0000
| 
|     further sunos magic
| 
| M	src/configure
| M	src/libshogun/lib/Mathematics.h
|  
* commit 3a73ba0921f395961352e1c54d08a75d2ec2997f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 23 21:44:42 2009 +0000
| 
|     split up python modular examples
| 
| M	doc/Doxyfile
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
| D	examples/python_modular/all_classifier.py
| D	examples/python_modular/all_distance.py
| D	examples/python_modular/all_preproc.py
| D	examples/python_modular/all_regression.py
| A	examples/python_modular/classifier_gmnpsvm.py
| A	examples/python_modular/classifier_gpbtsvm.py
| A	examples/python_modular/classifier_knn.py
| A	examples/python_modular/classifier_lda.py
| A	examples/python_modular/classifier_liblinear.py
| A	examples/python_modular/classifier_libsvm.py
| A	examples/python_modular/classifier_libsvmmulticlass.py
| A	examples/python_modular/classifier_libsvmoneclass.py
| A	examples/python_modular/classifier_mpdsvm.py
| A	examples/python_modular/classifier_perceptron.py
| A	examples/python_modular/classifier_subgradientsvm.py
| A	examples/python_modular/classifier_svmlight.py
| A	examples/python_modular/classifier_svmlight_batch_linadd.py
| A	examples/python_modular/classifier_svmlin.py
| A	examples/python_modular/classifier_svmocas.py
| A	examples/python_modular/classifier_svmsgd.py
| A	examples/python_modular/distance_braycurtis.py
| A	examples/python_modular/distance_canberra.py
| A	examples/python_modular/distance_canberraword.py
| A	examples/python_modular/distance_chebyshew.py
| A	examples/python_modular/distance_chisquare.py
| A	examples/python_modular/distance_cosine.py
| A	examples/python_modular/distance_euclidian.py
| A	examples/python_modular/distance_geodesic.py
| A	examples/python_modular/distance_hammingword.py
| A	examples/python_modular/distance_jensen.py
| A	examples/python_modular/distance_manhatten.py
| A	examples/python_modular/distance_manhattenword.py
| A	examples/python_modular/distance_minkowski.py
| A	examples/python_modular/distance_normsquared.py
| A	examples/python_modular/distance_sparseeuclidean.py
| A	examples/python_modular/distance_tanimoto.py
| M	examples/python_modular/graphical/svmlin.py
| A	examples/python_modular/preproc_logplusone.py
| A	examples/python_modular/preproc_normone.py
| A	examples/python_modular/preproc_prunevarsubmean.py
| A	examples/python_modular/preproc_sortulongstring.py
| A	examples/python_modular/preproc_sortwordstring.py
| A	examples/python_modular/regression_krr.py
| A	examples/python_modular/regression_libsvr.py
| A	examples/python_modular/regression_svrlight.py
| M	src/configure
|  
* commit c0b499788d204c2f1a4ca7a9481da52bb764131e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 19 12:08:40 2009 +0000
| 
|     a few sunos fixes.
| 
| M	src/configure
| M	src/libshogun/lib/common.h
|  
* commit de383fa3c7216954537d9ad4e8bd163220f0696e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 19 11:23:56 2009 +0000
| 
|     fix for get_classifier
| 
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit cbf4717935880159101c4144ed9444c900331d24
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 19 10:05:56 2009 +0000
| 
|     potentiallyfix one class mkl
| 
| M	src/NEWS
| M	src/libshogunui/SGInterface.cpp
|  
* commit 3c1bb4fc25dac98f2bf65c0b305d705ccf9287a4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 18 12:26:35 2009 +0000
| 
|     add example on how to use set_linear_classifier
| 
| M	examples/matlab_and_octave/svmocas.m
|  
* commit a24022d83891c264ceacb23b805a4357dafadb1c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 18 12:18:31 2009 +0000
| 
|     add missing include
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit 03132119e10dfe9a688f340288a0ed30e1606395
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 18 12:13:22 2009 +0000
| 
|     update NEWS
| 
| M	src/NEWS
|  
* commit 51aac9d4ecab27eff4a741267c55795717798c46
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 18 12:07:58 2009 +0000
| 
|     implement set_linear_classifier
| 
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit be25b85e3739b079b5be892ee4d14ca10d0e40cf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 16 08:49:34 2009 +0000
| 
|     Preparing for new Release shogun_0.8.0
| 
| M	doc/Doxyfile
|  
* commit cf66e8ffc071d19aafae287466376162a48be999
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 16 08:33:41 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit b0c7594cb304e6bb1f512875d5c9e5cbc9c05a3f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 16 08:25:15 2009 +0000
| 
|     another compile fix
| 
| M	src/libshogun/regression/svr/MKLRegression.cpp
|  
* commit fc2d217c4b9120a6c551e7f45cf3968324824b44
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 16 08:22:41 2009 +0000
| 
|     updated reference documentation
| 
| M	doc/pages/StaticRInterface.mainpage
|  
* commit a3ccdfe30cd9ca4feaa8edca2c48143b7c7c62db
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 16 08:22:08 2009 +0000
| 
|     fix compile error w/o svmlight
| 
| M	src/libshogun/classifier/svm/MKLClassification.cpp
|  
* commit 008ea8bb2fa32b3fceb23703968f3468f594b985
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 16 08:09:37 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 4e8a15cbf67369949a41e80501f6e77682c0f08c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 16 08:08:48 2009 +0000
| 
|     don't set precision - doesn't matter for now
| 
| M	examples/octave_modular/libsvm.m
| M	examples/python_modular/libsvm.py
|  
* commit 5dcc97636dfd51ed08c388c64728d50afd4f4d0e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 16 08:04:02 2009 +0000
| 
|     update news to release date
| 
| M	src/NEWS
|  
* commit b61fddc9df50f9f836a7d5eb341e1978e53623cd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 16 08:02:27 2009 +0000
| 
|     create equivalent python modular example
| 
| M	examples/python_modular/libsvm.py
|  
* commit 18933a3d11e83b72d261f5db55da201c4bc55703
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 16 07:51:59 2009 +0000
| 
|     finish tutorial
| 
| M	doc/pages/DeveloperTutorial.mainpage
| M	doc/pages/ModularTutorial.mainpage
| M	doc/pages/StaticTutorial.mainpage
| M	examples/cmdline/libsvm.sg
| M	examples/python_modular/graphical/svm.py
| A	examples/python_modular/libsvm.py
|  
* commit 0915141211d4c62cdb96f16a53b988596a1915cd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Aug 15 16:41:24 2009 +0000
| 
|     - on darwin use ${_prefix} in library path
|     - fix MKL modular inclusion
|     - fix examples for new syntax and a related regression for WD/SPEC features
| 
| M	examples/matlab_and_octave/string_features.m
| M	examples/matlab_and_octave/wd_and_dot_features.m
| M	examples/r/all_classifier.R
| M	examples/r/all_kernels.R
| M	examples/r/mkl_classify_christmas_star.R
| M	examples/r/mkl_regression_3sine_waves.R
| M	examples/r/mkl_regression_sine.R
| M	src/configure
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/Regression.i
| M	src/r/RInterface.cpp
|  
* commit 0944d6f4852cf7e245312957bbf61b43187e7bac
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Aug 15 15:20:46 2009 +0000
| 
|     enable new MKL for python modular
| 
| M	src/modular/Classifier.i
| M	src/modular/Regression.i
|  
* commit bd12b3ed595c3e286f292f39a66c780ce248e101
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Aug 15 14:59:46 2009 +0000
| 
|     updated reference documentation
| 
| M	doc/Doxyfile
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
|  
* commit 92aaaf9044ec5752c7bb070352a7975159f9cf24
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Aug 15 14:46:09 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 81b452322425a500d6acbd2789f01bf0ae88e19f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Aug 15 07:33:09 2009 +0000
| 
|     remove legacy examples and update documentation/examples
| 
| M	README
| M	doc/pages/Installation.mainpage
| M	doc/pages/Methods.mainpage
| M	doc/pages/Tutorial.mainpage
| M	examples/cmdline/all_classifier.sg
| M	examples/cmdline/libsvm.sg
| M	examples/matlab_and_octave/all_classifier.m
| M	examples/matlab_and_octave/graphical/mkl_pseudo_dna.m
| M	examples/matlab_and_octave/graphical/spec_interp.m
| M	examples/matlab_and_octave/graphical/svm_classification.m
| M	examples/matlab_and_octave/graphical/svm_multiclass.m
| M	examples/matlab_and_octave/graphical/test_gnpp_svm.m
| M	examples/matlab_and_octave/graphical/test_poim_wds.m
| M	examples/matlab_and_octave/graphical/test_spec_interp.m
| M	examples/matlab_and_octave/graphical/test_svm_multiclass.m
| M	examples/matlab_and_octave/graphical/test_wd_wds_parallel.m
| M	examples/matlab_and_octave/graphical/wds_consensus.m
| M	examples/matlab_and_octave/graphical/wds_shift_interp.m
| D	examples/matlab_and_octave/legacy/all_classifier.m
| D	examples/matlab_and_octave/legacy/all_clustering.m
| D	examples/matlab_and_octave/legacy/all_distance.m
| D	examples/matlab_and_octave/legacy/all_distribution.m
| D	examples/matlab_and_octave/legacy/all_kernels.m
| D	examples/matlab_and_octave/legacy/all_preproc.m
| D	examples/matlab_and_octave/legacy/all_regression.m
| D	examples/matlab_and_octave/legacy/graphical/cluster_hierarchical.m
| D	examples/matlab_and_octave/legacy/graphical/cluster_kmeans.m
| D	examples/matlab_and_octave/legacy/graphical/entropy.m
| D	examples/matlab_and_octave/legacy/graphical/hmm.m
| D	examples/matlab_and_octave/legacy/graphical/lda_classification.m
| D	examples/matlab_and_octave/legacy/graphical/local_alignment_kernel.m
| D	examples/matlab_and_octave/legacy/graphical/mkl_pseudo_dna.m
| D	examples/matlab_and_octave/legacy/graphical/spec_interp.m
| D	examples/matlab_and_octave/legacy/graphical/svm_classification.m
| D	examples/matlab_and_octave/legacy/graphical/svm_multiclass.m
| D	examples/matlab_and_octave/legacy/graphical/svr_regression.m
| D	examples/matlab_and_octave/legacy/graphical/test_gnpp_svm.m
| D	examples/matlab_and_octave/legacy/graphical/test_poim_wds.m
| D	examples/matlab_and_octave/legacy/graphical/test_regression.m
| D	examples/matlab_and_octave/legacy/graphical/test_regression_mkl.m
| D	examples/matlab_and_octave/legacy/graphical/test_spec_interp.m
| D	examples/matlab_and_octave/legacy/graphical/test_svm_multiclass.m
| D	examples/matlab_and_octave/legacy/graphical/test_wd_wds_parallel.m
| D	examples/matlab_and_octave/legacy/graphical/wds_consensus.m
| D	examples/matlab_and_octave/legacy/graphical/wds_shift_interp.m
| D	examples/matlab_and_octave/legacy/liblinear.m
| D	examples/matlab_and_octave/legacy/lik_kernel.m
| D	examples/matlab_and_octave/legacy/lpboost.m
| D	examples/matlab_and_octave/legacy/lpm.m
| D	examples/matlab_and_octave/legacy/markov_chain.m
| D	examples/matlab_and_octave/legacy/mkl_classify_christmas_star.m
| D	examples/matlab_and_octave/legacy/mkl_regression_3sine_waves.m
| D	examples/matlab_and_octave/legacy/mkl_regression_sine.m
| D	examples/matlab_and_octave/legacy/spec_kernel.m
| D	examples/matlab_and_octave/legacy/string_features.m
| D	examples/matlab_and_octave/legacy/stringfeatures.m
| D	examples/matlab_and_octave/legacy/svmocas.m
| D	examples/matlab_and_octave/legacy/svmsgd.m
| D	examples/matlab_and_octave/legacy/tests/test_classifier.m
| D	examples/matlab_and_octave/legacy/tests/test_combined.m
| D	examples/matlab_and_octave/legacy/tests/test_combined2.m
| D	examples/matlab_and_octave/legacy/tests/test_complex_scenario.m
| D	examples/matlab_and_octave/legacy/tests/test_custom_kernel.m
| D	examples/matlab_and_octave/legacy/tests/test_interface.m
| D	examples/matlab_and_octave/legacy/tests/test_kernel_optimization.m
| D	examples/matlab_and_octave/legacy/tests/test_knn.m
| D	examples/matlab_and_octave/legacy/tests/test_l2svm.m
| D	examples/matlab_and_octave/legacy/tests/test_linadd.m
| D	examples/matlab_and_octave/legacy/tests/test_linear_methods.m
| D	examples/matlab_and_octave/legacy/tests/test_mkl.m
| D	examples/matlab_and_octave/legacy/tests/test_mkl_svr.m
| D	examples/matlab_and_octave/legacy/tests/test_mkl_svr_wrapper.m
| D	examples/matlab_and_octave/legacy/tests/test_ocas_normalization.m
| D	examples/matlab_and_octave/legacy/tests/test_one_class_svm.m
| D	examples/matlab_and_octave/legacy/tests/test_regression_linadd.m
| D	examples/matlab_and_octave/legacy/tests/test_sliding_window.m
| D	examples/matlab_and_octave/legacy/tests/test_sparse.m
| D	examples/matlab_and_octave/legacy/tests/test_sparse_methods.m
| D	examples/matlab_and_octave/legacy/tests/test_spec_consensus.m
| D	examples/matlab_and_octave/legacy/tests/test_subgradsvm.m
| D	examples/matlab_and_octave/legacy/tests/test_svmlight_libsvm.m
| D	examples/matlab_and_octave/legacy/tests/test_svrlight_libsvr.m
| D	examples/matlab_and_octave/legacy/tests/test_wd_kernel.m
| D	examples/matlab_and_octave/legacy/tests/test_wd_linadd.m
| D	examples/matlab_and_octave/legacy/tests/test_wdocas.m
| D	examples/matlab_and_octave/legacy/tests/test_wds_consensus.m
| D	examples/matlab_and_octave/legacy/tests/test_wds_kernel.m
| D	examples/matlab_and_octave/legacy/tests/test_wdshift_position_weights.m
| D	examples/matlab_and_octave/legacy/tests/test_weighted_spectrum.m
| D	examples/matlab_and_octave/legacy/wd_kernel.m
| D	examples/matlab_and_octave/legacy/wds_kernel.m
| D	examples/matlab_and_octave/legacy/weighted_spec.m
| M	examples/matlab_and_octave/lik_kernel.m
| M	examples/matlab_and_octave/spec_kernel.m
| M	examples/matlab_and_octave/tests/test_combined.m
| M	examples/matlab_and_octave/tests/test_combined2.m
| M	examples/matlab_and_octave/tests/test_complex_scenario.m
| M	examples/matlab_and_octave/tests/test_custom_kernel.m
| M	examples/matlab_and_octave/tests/test_kernel_optimization.m
| M	examples/matlab_and_octave/tests/test_l2svm.m
| M	examples/matlab_and_octave/tests/test_linadd.m
| M	examples/matlab_and_octave/tests/test_mkl.m
| M	examples/matlab_and_octave/tests/test_ocas_normalization.m
| M	examples/matlab_and_octave/tests/test_one_class_svm.m
| M	examples/matlab_and_octave/tests/test_sliding_window.m
| M	examples/matlab_and_octave/tests/test_spec_consensus.m
| M	examples/matlab_and_octave/tests/test_svmlight_libsvm.m
| M	examples/matlab_and_octave/tests/test_wd_kernel.m
| M	examples/matlab_and_octave/tests/test_wd_linadd.m
| M	examples/matlab_and_octave/tests/test_wds_consensus.m
| M	examples/matlab_and_octave/tests/test_wds_kernel.m
| M	examples/matlab_and_octave/tests/test_wdshift_position_weights.m
| M	examples/matlab_and_octave/tests/test_weighted_spectrum.m
| M	examples/matlab_and_octave/wd_and_dot_features.m
| M	examples/matlab_and_octave/wd_kernel.m
| M	examples/matlab_and_octave/wds_kernel.m
| M	examples/python/all_classifier.py
| M	examples/python/graphical/svm_classification.py
| M	examples/python/test_mkl.py
| M	examples/r/all_classifier.R
| M	examples/r/graphical/svm_classification.R
| M	examples/r/mkl_regression_3sine_waves.R
| M	examples/r/mkl_regression_sine.R
| M	examples/r/string_kernel.R
| M	src/NEWS
|  
* commit 4588688e98294caa7b7adb1503530b8b6a966d40
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 14 15:32:27 2009 +0000
| 
|     function to set word in bitstring
| 
| M	src/libshogun/lib/BitString.h
|  
* commit 66b26862d9a3b7e0865fa5d7d645923b6ab48ffe
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 14 08:01:23 2009 +0000
| 
|     fix another memory leak occurring only with interleaved MKL
| 
| M	src/libshogun/classifier/svm/MKL.cpp
| M	src/libshogun/classifier/svm/MKL.h
| M	src/libshogun/kernel/CombinedKernel.h
|  
* commit 109aa470b0b9027dc235af4de9a1ccfed5320977
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 13 19:25:08 2009 +0000
| 
|     add BINARY alphabet
| 
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
|  
* commit 2c9bc06c85de1782e3077dfd8f027e17d54324fb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 13 19:01:17 2009 +0000
| 
|     fix another minor memory leak occurring with mkl
| 
| M	src/libshogun/classifier/svm/MKL.cpp
|  
* commit ae583fea151082bbf38b66be6c59811820e70874
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 11 19:26:15 2009 +0000
| 
|     fix further leaks related to multiple kernels and mkl
| 
| M	src/libshogun/classifier/svm/MKL.cpp
| M	src/libshogun/regression/svr/SVR_light.cpp
|  
* commit bc64e1483014a1efe8948f7a3433fe9191cbc262
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 11 19:13:11 2009 +0000
| 
|     fix a memory leak occurring with svm light linadd and multiple kernels
| 
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/lib/List.h
|  
* commit 44c74df76ca4dd334edbc13bf3aba676815c6e44
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Aug 10 15:34:37 2009 +0000
| 
|     be really strict on two-class labeling test, throw an error if label +1 or -1 or not found or labels!=+/-1 are found
| 
| M	src/libshogun/features/Labels.cpp
|  
* commit 3c014834c61b5e4a7d615189298fa29d58250c96
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 2 18:48:57 2009 +0000
| 
|     memory tracing still does not work with octave...
| 
| M	src/octave/OctaveInterface.cpp
|  
* commit 132bfc30585d76e846f05dc0169827cf52ed573e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 2 15:39:23 2009 +0000
| 
|     memory tracing finally works ( sg('whos') ), it requires the new/delete etc operators to be defined/implemented in the matlab.cpp/octave.cpp otherwise the standard operators (std:new,...) are used
| 
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/base/init.cpp
| M	src/libshogun/lib/Set.h
| M	src/libshogun/lib/memory.cpp
| M	src/libshogun/lib/memory.h
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/matlab/MatlabInterface.cpp
| M	src/octave/OctaveInterface.cpp
|  
* commit d581cf50ebc8755bfb78cc1fe50dbad0dde6ffd9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 2 13:11:24 2009 +0000
| 
|     add memory alloc tracing (configure --enable-trace-memory-allocs) and add new command "who" in static interfaces to list shogun alloc'd objects and their sizes. note that current implementation is very inefficient - only use for debugging purposes.
| 
| M	src/configure
| M	src/libshogun/lib/DynamicArray.h
| A	src/libshogun/lib/Set.h
| M	src/libshogun/lib/memory.cpp
| M	src/libshogun/lib/memory.h
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit be65a2faf9c70edab85a71ce8ff0267f9a559406
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 2 07:24:37 2009 +0000
| 
|     new loglevel ALL/ GCDEBUG (to debug memory leaks)
| 
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit d7566f5040eea2a087ea2fb95e81130fb5eab17a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 2 06:22:44 2009 +0000
| 
|     add several cancel_computation() checks
| 
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/classifier/LPBoost.cpp
| M	src/libshogun/classifier/svm/MKL.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVMSGD.cpp
| M	src/libshogun/classifier/svm/Tron.cpp
| M	src/libshogun/classifier/svm/gpdtsolve.cpp
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.h
|  
* commit 2b48ba29498325d4e91cd96e9cb9185c12c876cd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jul 31 18:50:45 2009 +0000
| 
|     several fixes in RMK
| 
| M	src/NEWS
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.h
|  
* commit bfa33c8eb077143fb6869afcc2d70c6197005deb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jul 31 14:42:10 2009 +0000
| 
|     fix potential memory leak in MKL
| 
| M	src/libshogun/classifier/svm/MKL.cpp
|  
* commit e2eb341afb1317774a464104f7ab8900f1b909fe
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jul 31 13:23:28 2009 +0000
| 
|     fix a bug in binary search and add a read_next function to binary stream
| 
| M	src/libshogun/lib/BinaryStream.h
| M	src/libshogun/lib/Mathematics.h
|  
* commit bb7b8c73697f05effec89b3f588fe4a6ff319af6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 30 12:19:19 2009 +0000
| 
|     initial rmk import
| 
| M	src/libshogun/kernel/Kernel.h
| A	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
| A	src/libshogun/kernel/RegulatoryModulesStringKernel.h
| M	src/modular/Kernel.i
|  
* commit ff5f21344f1209e11bbbf03c272fd48377d14997
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jul 29 12:55:11 2009 +0000
| 
|     add open/close functions and default constructor
| 
| M	src/libshogun/lib/BinaryStream.h
|  
* commit 4d1b73e4f0fa35f112d00b2ed5aa6ef243d59940
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jul 25 18:28:00 2009 +0000
| 
|     get mkl examples for python/r back to work
| 
| M	examples/matlab_and_octave/check.sh
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
| M	examples/matlab_and_octave/mkl_regression_3sine_waves.m
| M	examples/matlab_and_octave/mkl_regression_sine.m
| M	examples/python/test_mkl.py
| M	examples/r/mkl_classify_christmas_star.R
| M	examples/r/mkl_regression_3sine_waves.R
| M	examples/r/mkl_regression_sine.R
| M	examples/r/string_kernel.R
| M	examples/r/wd_mkl.R
| M	src/libshogun/classifier/svm/MKL.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
| M	src/r/RInterface.cpp
|  
* commit 3294a563c0a7533f0db9d09358a87a69deee3969
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jul 25 11:43:17 2009 +0000
| 
|     - implement ridge kernel normalizer and include in static/modular if's
|     - minor fixes to binary stream
| 
| M	src/libshogun/classifier/svm/MKL.cpp
| M	src/libshogun/kernel/CommWordStringKernel.h
| M	src/libshogun/kernel/Kernel.h
| A	src/libshogun/kernel/RidgeKernelNormalizer.h
| M	src/libshogun/lib/BinaryStream.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/GUIKernel.h
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/Kernel.i
|  
* commit 5ce129935d2ec255a6d5636091d8dd960c1f71ce
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jul 24 16:54:47 2009 +0000
| 
|     remove empty line
| 
| M	src/libshogun/lib/BinaryStream.h
|  
* commit cbfec1ad0f29fb5f8d227b6e7e0558afab95e16f
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Fri Jul 24 08:37:36 2009 +0000
| 
|     MKL: more more debug output
| 
| M	src/libshogun/classifier/svm/MKL.cpp
|  
* commit 8bb45d43a1add14d47830b6884768b1a0db28760
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Jul 23 20:12:31 2009 +0000
| 
|     MKL: again, more debug output
| 
| M	src/libshogun/classifier/svm/MKL.cpp
|  
* commit 87a0b0183ae12b1a07418c5a61fc8f071b659536
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Jul 23 19:04:28 2009 +0000
| 
|     MKL: even more debug ouput
| 
| M	src/libshogun/classifier/svm/MKL.cpp
|  
* commit 87dd6ad615ef7a4ca599de892fcf831cf5de7cfd
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Jul 23 18:55:32 2009 +0000
| 
|     MKL: more debugging output
| 
| M	src/libshogun/classifier/svm/MKL.cpp
|  
* commit cd7c38bbaf1ff7e458ffae19c56c88c967c9964d
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Jul 23 17:59:02 2009 +0000
| 
|     MKL: added assertions and debug-printfs for strange bug in direct reported by Marius
| 
| M	src/libshogun/classifier/svm/MKL.cpp
|  
* commit 094ebf6ee9335d24c126ab6b3f82c56d00f27435
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Jul 23 17:09:06 2009 +0000
| 
| M	src/libshogun/classifier/svm/MKL.cpp
|  
* commit 15140c1fa792d6b661dd559fd16fda4994fde97e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 23 17:01:44 2009 +0000
| 
|     fix wrong call to bias enabled instead of interleaved_enabled
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit 83faaa0220cc0e9f78f69f616fa838e62fd8577c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 23 13:01:23 2009 +0000
| 
|     compute obj. based on new beta
| 
| M	src/libshogun/classifier/svm/MKL.cpp
|  
* commit 97267b6aed75388904cac4fc343224c2654f3e1e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 23 09:29:21 2009 +0000
| 
|     binary mmap alike stream
| 
| A	src/libshogun/lib/BinaryStream.h
|  
* commit 2bc2fba74262d080360d30141a4fd827b8db5ea2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jul 22 15:44:15 2009 +0000
| 
|     mkl for modular interfaces
| 
| M	src/modular/Classifier.i
| M	src/modular/Regression.i
|  
* commit 781f801ac2a933f64a7498a22896298d021a54a3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jul 22 06:03:00 2009 +0000
| 
|     compile fixes
| 
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIClassifier.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit 9460c63b6bc194d8baf406e5edb06adb5f035409
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jul 22 05:57:49 2009 +0000
| 
|     implement set_constraint_generator (to allow for arbitrary svm's in mkl wrapper)
| 
| M	src/NEWS
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIClassifier.h
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit 8c5816a43e2d665adbd5fc824e327d950f7ccbeb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jul 22 05:32:16 2009 +0000
| 
|     fix crasher with CPLEX
| 
| M	src/libshogun/classifier/svm/MKL.cpp
| M	src/libshogun/classifier/svm/MKL.h
|  
* commit c96c65bb44dbbb8dd4e65e75db7e737e04f55c2e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 21 18:35:55 2009 +0000
| 
|     compile fix when svmlikght is disabled
| 
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 4850e33a9a66932c688a6fadd7152c08ac196a15
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 21 18:31:46 2009 +0000
| 
|     another cplex related compile fix
| 
| M	src/libshogun/classifier/svm/MKL.cpp
|  
* commit b173310a04e9fee237cddfe40a31ee635f3506a9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 21 18:18:52 2009 +0000
| 
|     compile fix when cplex is available
| 
| M	src/libshogun/classifier/svm/MKL.cpp
|  
* commit 3f404472bd7a5dd51ad4cdd170d0c2f7145e794e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 21 16:54:08 2009 +0000
| 
|     list all available options
| 
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
| M	examples/matlab_and_octave/mkl_regression_3sine_waves.m
| M	examples/matlab_and_octave/mkl_regression_sine.m
|  
* commit 9a9b3d291aefe76d4f24986526d335fc521f58c2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 21 16:27:35 2009 +0000
| 
|     remove use_mkl
| 
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
|  
* commit 263933053110e174f54b34df619027c0daf14c03
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 21 16:22:16 2009 +0000
| 
|     adjust for new interface
| 
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
| M	examples/matlab_and_octave/mkl_regression_3sine_waves.m
| M	examples/matlab_and_octave/mkl_regression_sine.m
|  
* commit de3f41f9126341eeb9ea47f53ed80b8a26f992ea
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 21 15:54:27 2009 +0000
| 
|     set reasonable defaults(?), enable all potential mkl solvers and add gui command to enable interleaved optimization
| 
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/svm/MKL.cpp
| M	src/libshogun/classifier/svm/MKL.h
| M	src/libshogun/classifier/svm/MKLClassification.cpp
| M	src/libshogun/classifier/svm/MKLClassification.h
| A	src/libshogun/classifier/svm/MKLOneClass.cpp
| A	src/libshogun/classifier/svm/MKLOneClass.h
| D	src/libshogun/classifier/svm/MKLRegression.cpp
| D	src/libshogun/classifier/svm/MKLRegression.h
| D	src/libshogun/classifier/svm/OneClassMKL.cpp
| D	src/libshogun/classifier/svm/OneClassMKL.h
| A	src/libshogun/regression/svr/MKLRegression.cpp
| A	src/libshogun/regression/svr/MKLRegression.h
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIClassifier.h
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit 92a07ebee6c0d978d14ec9527e67aaabcec99a73
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 21 13:26:50 2009 +0000
| 
|     add oneclass mkl
| 
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/svm/MKL.cpp
| M	src/libshogun/classifier/svm/MKL.h
| M	src/libshogun/classifier/svm/MKLClassification.cpp
| M	src/libshogun/classifier/svm/MKLClassification.h
| M	src/libshogun/classifier/svm/MKLRegression.cpp
| M	src/libshogun/classifier/svm/MKLRegression.h
| A	src/libshogun/classifier/svm/OneClassMKL.cpp
| A	src/libshogun/classifier/svm/OneClassMKL.h
|  
* commit 0355392f5164cf090aa861a54543d2574a03978a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 21 11:09:10 2009 +0000
| 
|     mkl regression works again
| 
| M	src/libshogun/base/Version.h
| M	src/libshogun/classifier/svm/MKL.cpp
| M	src/libshogun/classifier/svm/MKL.h
| M	src/libshogun/classifier/svm/MKLClassification.cpp
| M	src/libshogun/classifier/svm/MKLClassification.h
| M	src/libshogun/classifier/svm/MKLRegression.cpp
| M	src/libshogun/classifier/svm/MKLRegression.h
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/SVM_light.h
| M	src/libshogun/regression/svr/SVR_light.cpp
| M	src/libshogun/regression/svr/SVR_light.h
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 04944fc27e557fdac69859c68e6f0463afce16a1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jul 18 08:35:12 2009 +0000
| 
|     restructure MKL framework: core routines are the same for regression/classification...
| 
| M	src/NEWS
| M	src/libshogun/classifier/svm/MKL.cpp
| M	src/libshogun/classifier/svm/MKL.h
| M	src/libshogun/classifier/svm/MKLClassification.cpp
| M	src/libshogun/classifier/svm/MKLClassification.h
| M	src/libshogun/classifier/svm/MKLRegression.cpp
| M	src/libshogun/classifier/svm/MKLRegression.h
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/regression/svr/SVR_light.cpp
| M	src/libshogun/regression/svr/SVR_light.h
|    
*   commit c708f3c735cb4892a77e936bc5cbb7fae2da1846
|\  Merge: 013587c f267987
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jul 17 07:40:22 2009 +0000
| | 
| |     * merge in changes from mkl-branch (like more stable mkl impl., obj. computation, multiple features, other kernel normalizers,...)
| |     	- move mkl functions from svmlight to MKL
| |     	- move compute objective function for MKL across MKL objects
| |   
| * commit f267987d2c1445c72f00a8510699d92e9964672b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Jul 12 18:24:03 2009 +0000
| | 
| |     fix compilation
| | 
| | M	src/libshogun/lib/versionstring.h
| | M	src/libshogunui/SGInterface.cpp
| |   
| * commit 063372dc338417097f1e7fe09306f780ffcecbaa
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Jul 12 18:10:20 2009 +0000
| | 
| |     set labels / kernel before objective computation
| | 
| | M	src/libshogunui/SGInterface.cpp
| | M	src/libshogunui/SGInterface.h
| |   
| * commit 14aed47decca1d0a6b6412a5f7517c74083c17de
| | Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| | Date:   Mon Jun 29 16:14:12 2009 +0000
| | 
| |     * newton MKL repaired
| |     * direct beta update ("analytically") repaired
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/classifier/svm/SVM_light.h
| | M	src/libshogun/lib/versionstring.h
| |   
| * commit 8cc25afd0bb9001442be70d12afb17047960356d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 17 16:10:05 2009 +0000
| | 
| |     add mkl debug ooutput
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| |   
| * commit 7bafdd4438e5691349dcd5fe6b9a4c7b88a694c5
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 09:08:04 2009 +0000
| | 
| |     print out constraint matrix when CPXaddqconst fails
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| |   
| * commit f279458ee01425db110c6e9ca90924ae15e23ed3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 9 15:05:31 2009 +0000
| | 
| |     set solver type before svm training (and only for svms currently)
| | 
| | M	src/libshogunui/GUIClassifier.cpp
| |   
| * commit beb39b137d70e7339ed70316abd0151c94568152
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jun 4 23:48:24 2009 +0000
| | 
| |     print errors...
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| |   
| * commit 0e9072e0f04f8f7373c04003f98312157046ffcc
| | Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| | Date:   Tue Jun 2 16:40:41 2009 +0000
| | 
| |     Newton MKL furnished with line search
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/classifier/svm/SVM_light.h
| | M	src/libshogun/lib/versionstring.h
| |   
| * commit bb531b0f46c1fffe2d1a269bfb8c75b75d733ce7
| | Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| | Date:   Tue Jun 2 09:50:27 2009 +0000
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/lib/versionstring.h
| |   
| * commit 4c048a608005012eca7b17e5e811a5c0d85786e5
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun May 31 18:23:05 2009 +0000
| | 
| |     remove obsolete function
| | 
| | M	src/libshogun/classifier/svm/SVM.h
| |   
| * commit 7124d1157a70bbf00a2a3b8935c169a1994fa6f8
| | Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| | Date:   Fri May 29 15:03:33 2009 +0000
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/lib/versionstring.h
| |   
| * commit 1929d7a7664498515d7edee5894a9d65cb341885
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 29 08:00:29 2009 +0000
| | 
| |     add new command add_multiple_features for memory eff. mkl on same features
| | 
| | M	src/libshogun/lib/versionstring.h
| | M	src/libshogunui/GUICommands.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/libshogunui/SGInterface.h
| |   
| * commit f25cdfd4a295a8ae156aa79334f66f01fdb0c177
| | Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| | Date:   Thu May 28 21:11:47 2009 +0000
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| |   
| * commit e0c9ae22f06a660bbb79577714408d99855f1d2e
| | Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| | Date:   Thu May 28 21:00:20 2009 +0000
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/lib/versionstring.h
| |   
| * commit 0c06f0254c53b863bac5241c9ca2dc28490c77b3
| | Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| | Date:   Wed May 27 09:29:55 2009 +0000
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| |   
| * commit 517050c1b42abbddb5d135bfe637fc400f7ba797
| | Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| | Date:   Wed May 27 09:14:13 2009 +0000
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/classifier/svm/SVM_light.h
| | M	src/libshogun/lib/versionstring.h
| |   
| * commit fca2b82d1a2da21a614d4ece9b40d6f4f9c4ec44
| | Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| | Date:   Thu May 14 22:26:46 2009 +0000
| | 
| |     more newton iterations => faster convergence  :o)
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/lib/versionstring.h
| |   
| * commit a5ca93dec7eb6868644a7d64ac5cfbb399dfca2b
| | Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| | Date:   Thu May 14 14:25:52 2009 +0000
| | 
| |     newton MKL now converges to same solution as the SQCQP-SIP
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/lib/versionstring.h
| |   
| * commit ce6aedfda5fc7b1215edd96154296416703d0309
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 7 12:17:52 2009 +0000
| | 
| |     fix compilation problem w/ cplex
| | 
| | M	src/libshogun/classifier/svm/CPLEXSVM.cpp
| |   
| * commit 1cbf9ce9b934da813fd83a70a26a022604b8ff57
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 7 07:07:40 2009 +0000
| | 
| |     new kernel normalizer variance use via sg('set_kernel_normalizer', 'VARIANCE')
| | 
| | M	src/libshogun/kernel/CommWordStringKernel.h
| | M	src/libshogun/kernel/FirstElementKernelNormalizer.h
| | M	src/libshogun/kernel/Kernel.h
| | A	src/libshogun/kernel/VarianceKernelNormalizer.h
| | M	src/libshogunui/GUIKernel.cpp
| | M	src/libshogunui/SGInterface.cpp
| |   
| * commit ccf6d22cf08fd637ebd2bae828c99f1b14e43b02
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 6 07:44:54 2009 +0000
| | 
| |     add convenience functions for computing mkl duality gap
| | 
| | M	src/libshogun/classifier/svm/SVM.h
| | M	src/libshogun/lib/versionstring.h
| | M	src/libshogunui/GUICommands.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/libshogunui/SGInterface.h
| |   
| * commit 2f6dc878745de050098bbfb03dc48b11df735881
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 6 07:07:16 2009 +0000
| | 
| |     add exmaple
| | 
| | A	examples/matlab_and_octave/mkl_debug.m
| |   
| * commit e0367aed8c7acc5bc73496d0feee1a705bdbec32
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 6 06:24:11 2009 +0000
| | 
| |     branching off 0.7.3 + alex's mkl newton patch
| | 
| | M	src/libshogun/classifier/svm/MPDSVM.cpp
| | M	src/libshogun/classifier/svm/SVM.cpp
| | M	src/libshogun/classifier/svm/SVM.h
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/lib/versionstring.h
| | M	src/libshogunui/GUICommands.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/libshogunui/SGInterface.h
| |   
| * commit e0f22212e8c6c2eefe3dc6775f682abf47a85fac
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat May 2 20:17:22 2009 +0000
| | 
| |     Tagging shogun_0.7.3 release
| | 
| | A	src/libshogun/lib/versionstring.h
| |   
* | commit 013587c96eca07c30358fdb4bcfea2c518522566
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jul 16 16:09:32 2009 +0000
| | 
| |     interleaved mkl seems to work now :)
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| | M	src/libshogun/classifier/svm/SVM.cpp
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/classifier/svm/SVM_light.h
| | M	src/libshogunui/GUIClassifier.cpp
| |   
* | commit 252b24a466e7861b76f1eaf2a36349a282960f12
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jul 16 08:12:29 2009 +0000
| | 
| |     wip checkin
| | 
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| | M	src/libshogun/classifier/svm/MKLClassification.h
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/classifier/svm/SVM_light.h
| |   
* | commit d6aac0ae099eb78032695f2c0aefdd26f1f54511
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jul 15 16:14:57 2009 +0000
| | 
| |     fix comment
| | 
| | M	src/libshogun/classifier/svm/MKL.h
| |   
* | commit 8992416acd306e5791b103cee079bd5becaba1c2
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jul 15 11:58:34 2009 +0000
| | 
| |     pass mkl obj in callback function
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKL.h
| | M	src/libshogun/classifier/svm/SVM.cpp
| | M	src/libshogun/classifier/svm/SVM.h
| |   
* | commit 4b8be5ecf70755fe518f9e76640f6afc511c1e03
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jul 15 10:23:41 2009 +0000
| | 
| |     add a helper callback function that takes an MKL object, sumw and suma as input, finally compiles and works again w/ wrapper
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKL.h
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| | M	src/libshogun/classifier/svm/MKLClassification.h
| | M	src/libshogun/classifier/svm/MKLRegression.cpp
| | M	src/libshogun/classifier/svm/MKLRegression.h
| | M	src/libshogun/classifier/svm/SVM.h
| |   
* | commit e1fcc2f73b474e8c0518bc46444c2b55167ea16c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jul 15 08:23:24 2009 +0000
| | 
| |     wip commit
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKL.h
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| | M	src/libshogun/classifier/svm/SVM.h
| |   
* | commit b3227a1dd956bce0e552e1cbef8cc8f6f17779e5
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 14 20:44:58 2009 +0000
| | 
| |     remove debug code, minor cleanup
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| |   
* | commit cdecb90e400549d2d398f1f0da09b2942b09acec
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 14 15:52:30 2009 +0000
| | 
| |     1-norm mkl wrapper optimization via glpk works now
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKL.h
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| | M	src/libshogun/classifier/svm/MKLClassification.h
| | M	src/libshogun/classifier/svm/MKLRegression.cpp
| | M	src/libshogun/classifier/svm/MKLRegression.h
| | M	src/libshogun/lib/Mathematics.cpp
| | M	src/libshogun/lib/Mathematics.h
| |   
* | commit 95ca3ed53fbacc3b56188caa2b6ea1396480ff9b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 14 09:48:45 2009 +0000
| | 
| |     mkl with nop wrapper works
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKL.h
| | M	src/libshogun/classifier/svm/MKLClassification.h
| | M	src/libshogun/classifier/svm/MKLRegression.h
| | M	src/libshogunui/GUIClassifier.cpp
| | M	src/libshogunui/GUIClassifier.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit a6d988977551052be191e24e0fa2adabb912a768
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Mon Jul 13 10:56:52 2009 +0000
| | 
| |     fixed conflict
| | 
| | M	src/libshogun/structure/DynProg.cpp
| |   
* | commit f5b09c05df00db35de329c5e1252adf34c08d911
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jul 13 10:45:05 2009 +0000
| | 
| |     further WIP towards general MKL wrapping
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKL.h
| |   
* | commit c80abd220669cd96f7cb4bd25adfb729dfdb606e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 29 07:49:21 2009 +0000
| | 
| |     encode full libpath in case of darwin
| | 
| | M	src/configure
| |   
* | commit df2c634c0429849bdccb4511a0b3156ddbf0c9b6
| | Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| | Date:   Fri Jun 26 10:59:32 2009 +0000
| | 
| |     + removed several bugs:
| |       - set_element arguments were in incorrect order
| |       - copy_array/ free_array flags were set incorrectly in some Array2s
| |       - get_{states,scores,positions} did not copy the array structures
| | 
| | M	src/libshogun/structure/DynProg.cpp
| |   
* | commit b2c732815e302d2dd548a894cb9eaaf149001cd3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jun 25 15:49:48 2009 +0000
| | 
| |     fix typo in doc
| | 
| | M	src/libshogun/kernel/LinearKernel.h
| |   
* | commit d9b1b32ebf25594568a3efb8caa336f10f186181
| | Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| | Date:   Mon Jun 22 18:15:45 2009 +0000
| | 
| |     + added missing typemap for set_content_type_array
| |     + added asertions
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/modular/Structure.i
| |   
* | commit 97b0beab1c165540a758949b4ed9c759899c58f7
| | Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| | Date:   Mon Jun 22 17:04:05 2009 +0000
| | 
| |     + fixed typemap for 3d array observation_matrix
| |     + added typemap for compute plif matrix
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/modular/Structure.i
| | M	src/python_modular/swig_typemaps.i
| |   
* | commit 8c3ff726ea132d29f16fccb9ab9e29da06257645
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Fri Jun 19 15:17:50 2009 +0000
| | 
| |     -- intron lists can be used now...
| |        output reduced
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogun/structure/IntronList.cpp
| | M	src/libshogun/structure/IntronList.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 8a32eee557071485371755628908942fe72fc06c
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Thu Jun 18 15:32:58 2009 +0000
| | 
| |     double free fixed and output reduced
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit f9e62d5bd6408551fdc9af57c4a875d94c4a5c49
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Thu Jun 18 15:32:50 2009 +0000
| | 
| |     -- moved some computations that were duplicated in SGInterface into DynProg.cpp
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit dfb78c264a8a79754bebf2b207b2f7eb1a9ef8a4
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue Jun 16 16:16:44 2009 +0000
| | 
| |     bug fixes
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit d44a55b1bacb365944c18cb06b37f056bd794943
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue Jun 16 14:55:39 2009 +0000
| | 
| |     removed member variables that were not in use any more
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 05745cc34a952080d137d0da1815805b02bd1951
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue Jun 16 14:45:55 2009 +0000
| | 
| |     compile fixes
| | 
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 5b7f2d1a6f6ea92ff9036cab3913e8e545c5516f
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue Jun 16 14:45:51 2009 +0000
| | 
| |     -- setting all_pos and seq_len in the begining as member variables
| |        avoids passing them all the time
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogun/structure/IntronList.cpp
| | M	src/libshogun/structure/IntronList.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 671f632b7e5f3ee80214412cfb14d168a97d52d6
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue Jun 16 14:45:45 2009 +0000
| | 
| |     started to include Intron Lists in DynProg
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogun/structure/IntronList.cpp
| | M	src/libshogun/structure/IntronList.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit a5cc72b4a22496c78f1f0af82d212432ca6542af
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 15 17:50:21 2009 +0000
| | 
| |     fix get_kernel_weights being transposed to set_kernel_weights
| | 
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit afec13a6e1282fc0c2fc48c61e297f664d1dca0b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 15 17:41:56 2009 +0000
| | 
| |     convert set_observation_matrix() to use 3d-array
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/modular/Structure.i
| |   
* | commit c0a90f5570038ed32326c2f28090771f1093e7aa
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 15 17:25:37 2009 +0000
| | 
| |     split up precompute_content_values
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit eef3f5e86f65ebaebf047d513902d98c765b8856
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Mon Jun 15 16:26:20 2009 +0000
| | 
| |     rename m_seq in DynProg.h as well
| | 
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 75c1147fdf678f6f849a326e0bafbb840d6bf0fd
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Mon Jun 15 16:26:15 2009 +0000
| | 
| |     -- renamed m_seq -> m_observation_matrix
| |        and the function set_seq -> set_observation_matrix
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 55e89f446cbcd1605b514f78984d5fc1ef661643
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Mon Jun 15 16:26:11 2009 +0000
| | 
| |     -- feature matrix was not set in in best_path_trans_deriv interface
| |     -- third dimension of feature matrix was ignored
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 81129c218e35b775d40d329bf723d5c9a9c51fd9
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Mon Jun 15 14:24:52 2009 +0000
| | 
| |     fix typo
| | 
| | M	src/libshogun/structure/PlifMatrix.cpp
| |   
* | commit 64b11712af05d8cc4fadf571aed753726ff5a093
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Mon Jun 15 14:24:48 2009 +0000
| | 
| |     -- bugfix: penalties were written into the limits array
| | 
| | M	src/libshogun/structure/PlifMatrix.cpp
| |   
* | commit adc8344753d079c346f9a3d338797eb0d46d33ab
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Mon Jun 15 14:24:39 2009 +0000
| | 
| |     -- removed functions that were not used any more.
| |        Most of them were related to content svm predictions.
| |        They became useless because these predictions are now
| |        done in a separate step before the decoding.
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 22693cbb46f1991b9c1d7c2def9c33d768e832b1
| | Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| | Date:   Mon Jun 15 13:07:43 2009 +0000
| | 
| |     + added typemap to wrap
| |        pm.compute_signal_plifs(...
| | 
| | M	src/modular/Structure.i
| |   
* | commit c642680e4f2ee6a2ca5be0e1dea3ae5be24923fa
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 15 10:56:16 2009 +0000
| | 
| |     get things to work with octave 3.2 and elwms
| | 
| | M	src/octave/OctaveInterface.cpp
| | M	src/octave/OctaveInterface.h
| |   
* | commit e187baa17765ddedb60436e81614c3119761d9db
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 15 09:22:13 2009 +0000
| | 
| |     compile fixes for octave 3.2
| | 
| | M	src/configure
| | M	src/octave/OctaveInterface.cpp
| |   
* | commit 1905a1a71edb90a317aa251cfbeff33859e347d4
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 15 09:17:32 2009 +0000
| | 
| |     remove obsolete find_values_till_pos functions
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit e30b3349d24846fd1f6e8d324f24b36786ba4e75
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jun 12 14:37:52 2009 +0000
| | 
| |     collection of hash functions in CHash
| | 
| | M	src/libshogun/lib/Hash.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 261267ac1d537d4cb895ad186b24c1bca756e7dc
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jun 12 14:29:39 2009 +0000
| | 
| |     add crc32 and md5 string hashing functions
| | 
| | A	src/libshogun/lib/Hash.cpp
| | A	src/libshogun/lib/Hash.h
| | M	src/libshogun/lib/Mathematics.cpp
| | M	src/libshogun/lib/Mathematics.h
| |   
* | commit 932e274011e17fa9f343232c6753c5ed755cfa1d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jun 12 10:18:19 2009 +0000
| | 
| |     introduce dummy parameter maxlen
| | 
| | M	src/libshogun/structure/PlifMatrix.cpp
| | M	src/libshogun/structure/PlifMatrix.h
| | M	src/modular/Structure.i
| |   
* | commit 4f55b54b000fc8ff3275daac337d7570f2963e73
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jun 12 10:06:09 2009 +0000
| | 
| |     - fill in typemaps
| |     - minor compile fixes w/ cplex
| | 
| | M	src/libshogun/classifier/svm/MKLClassification.h
| | M	src/libshogun/regression/svr/SVR_light.cpp
| | M	src/modular/Structure.i
| |   
* | commit 3a64d3f825f5e81fb54e1c472acf85043dfa6cf1
| | Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| | Date:   Fri Jun 12 09:47:31 2009 +0000
| | 
| |     + added PlifMatrix rename/includes
| | 
| | M	src/modular/Structure.i
| |   
* | commit 5c0f8aa95092505073eb6537e451ed66e5e69e30
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jun 12 06:59:47 2009 +0000
| | 
| |     update news
| | 
| | M	src/NEWS
| |   
* | commit 145d00af8012b3f7b8975779c3509aaec782e5a9
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jun 12 06:40:21 2009 +0000
| | 
| |     upon make install of elwms don't install files into R/octave/python if these interfaces were not configured
| | 
| | M	src/Makefile.template
| |   
* | commit 87816285331e34e82b9ea8a0eed918cb36361294
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jun 11 14:09:55 2009 +0000
| | 
| |     get rid of struct monster function. things are fully split up now and should work under modular interfaces (given typemaps are added at few places...)
| | 
| | M	src/libshogun/structure/PlifMatrix.cpp
| | M	src/libshogun/structure/PlifMatrix.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 8ed9e5ed74cf65ba02a9a52895029ae1fa499273
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jun 11 13:37:28 2009 +0000
| | 
| |     remove plif_ids, min and max_values from set_plif_struct
| | 
| | M	src/libshogun/structure/PlifMatrix.cpp
| | M	src/libshogun/structure/PlifMatrix.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 91d07f37d52fc5f3faf7aeb4fe0881cb09cdb5d0
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jun 11 13:14:35 2009 +0000
| | 
| |     start to split up set_plif_struct, move get_zero_terminated_string_copy as static function into StringFeatures
| | 
| | M	src/libshogun/features/StringFeatures.h
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogun/structure/PlifMatrix.cpp
| | M	src/libshogun/structure/PlifMatrix.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit d18c4c76ae70484e90d14226613cd465c0590004
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jun 11 09:53:11 2009 +0000
| | 
| |     git rid of the PlifArray** arguments in compute_nbest_path /  *trans_deriv
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogun/structure/PlifMatrix.h
| | M	src/libshogunui/GUIStructure.cpp
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit acce5a3534d88fb07c6b8eeacc0ccad5fdcdad1e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jun 11 05:46:10 2009 +0000
| | 
| |     extract plif related functions from GUIStructure into new class PlifMatrix
| | 
| | M	src/libshogun/lib/Array.h
| | A	src/libshogun/structure/PlifMatrix.cpp
| | A	src/libshogun/structure/PlifMatrix.h
| | M	src/libshogunui/GUIStructure.cpp
| | M	src/libshogunui/GUIStructure.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 18479fb1710fe1153dc14ce34aebc8690cc32d87
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 18:31:11 2009 +0000
| | 
| |     - remove the output arguments from best_path* functions and use member variables to store the results and seperate get_* functions to obtain the output member variables
| |     - properly initialize output member variables
| |     - rename function best_path_trans to compute_nbest_paths() and remove templated implementation
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogun/structure/Plif.cpp
| | M	src/libshogun/structure/Plif.h
| | M	src/libshogunui/GUIStructure.cpp
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 563d4e5841b9201c09f106b44d9b7e146f0d59cd
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 14:18:30 2009 +0000
| | 
| |     remove best_path prefix
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 10dec52610d08e2755496ad10110531ea180e75e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 13:19:24 2009 +0000
| | 
| |     remove sparse args from best_path_trans and move the templated function into the .h file (yes that is the policy ... should get rid of templates)
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 38ce3aafc54925545072ec3d0b1d1f589aae3971
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 11:47:14 2009 +0000
| | 
| |     remove orf_info form best_path_trans{,_derif}
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 9b4302fc5bd26e4692919e2dc165383c3907c8f5
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 11:08:08 2009 +0000
| | 
| |     remove orf_info from best_path_trans
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 3aea0afca983d5a0ad7c2e2ba595608ec1ea0630
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 10:50:20 2009 +0000
| | 
| |     get rid of seq argument in best_path_trans
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 52c711ee192d22ca4f2cc8564a34302b6a0b16e0
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 09:39:22 2009 +0000
| | 
| |     move wordstr creation into DynProg
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 371094ddb6c79df8ee4830c148bb12bc92b60143
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 08:32:30 2009 +0000
| | 
| |     remove code duplication and move translate_from_single_order to Alphabet and make dynprog and stringfeatures use this
| | 
| | M	src/libshogun/features/Alphabet.h
| | M	src/libshogun/features/StringFeatures.h
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 27f8e0c752b6ed473e64b8bcc9215cd45e012360
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 08:00:31 2009 +0000
| | 
| |     genestr, genestr_num and length are no longer passed as arguments (internally functions use m_genestr instead)
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit cbd7596807bae6a479cc800f02cd72ac35431c1e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 07:32:27 2009 +0000
| | 
| |     - introduce function set_gene_string(char* s, int32_t len) (no longer 2d!)
| |     - remove function set_genestr_len, length is obtained from gene_string anyway
| |     - get rid of all the m_step m_call variables, no one knows which values they should take anyway
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 7b4c8426bba0b881b5166ccacdb352201160f11d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 06:12:59 2009 +0000
| | 
| |     merge member variables dict_weight and m_dict_weight
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 3d8752576e4e87359b763eac92b8fd2e5e058800
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 06:04:18 2009 +0000
| | 
| |     removed member variable m_dict_weights_array, still works
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 9868fa77be2e8ee624735ec9ccead9e42c439a5a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 9 16:51:46 2009 +0000
| | 
| |     - remove obsolete best_path_2struct/simple functions
| |     - prefix all member variables with m_ (except for dict_weights)
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/libshogunui/SGInterface.h
| |   
* | commit 199f84c2649a587687077697cf024b2af4742ec3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 9 16:19:35 2009 +0000
| | 
| |     replace N -> m_N
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 718591e53064430637b6c4a05d6489e5819f7afd
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 9 16:04:05 2009 +0000
| | 
| |     further m_ prefixing
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 8f2f2ca064e51ef232a8c1013a0ea9154f8c8713
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 9 15:28:50 2009 +0000
| | 
| |     further m_ prefixing
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 07d919b36ff9e239c106f12bfe0b3292d7c8196e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 9 15:10:35 2009 +0000
| | 
| |     continue m_ prefixing
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 61c5bf935206fa7bd8668385746ab37661ce7eb8
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue Jun 9 14:48:23 2009 +0000
| | 
| |     -- new class IntronList created
| |       stores a list of supported introns for efficient access during the dynamic programm
| |     --functions of the class tested with valgrind
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | A	src/libshogun/structure/IntronList.cpp
| | A	src/libshogun/structure/IntronList.h
| | M	src/libshogunui/GUICommands.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/libshogunui/SGInterface.h
| |   
* | commit b38d5452cb41c3ba99e02a6058c4c14ec21cbcfb
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 9 14:35:23 2009 +0000
| | 
| |     - remove inline functions
| |     - start prefixing member variables with m_ (first m_max_a_id )
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 1e89c3480f8dfb89e3e13ffa111fcbab32487a7d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 9 09:09:37 2009 +0000
| | 
| |     fix some obvious mixups between parameters p_N and N etc and make all variables protected
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 4bf4f406f3d3bb802863a2c45fe806677b3a409d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 9 07:07:21 2009 +0000
| | 
| |     compile fixes for line-search...
| | 
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| |   
* | commit d7e5efe6dca3fd295a4721ec0d2c441528acfdf6
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 8 21:11:34 2009 +0000
| | 
| |     potentially speed up multi-class svm working set selection
| | 
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| |   
* | commit 0d5384e440e797e718ce4a1471e528de91bcda37
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 3 10:05:30 2009 +0000
| | 
| |     fix rare compilation error
| | 
| | M	src/python/PythonInterface.cpp
| |   
* | commit 8362ede336dd20d38a56664a25f0e8133e92242a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 3 09:56:11 2009 +0000
| | 
| |     fix custom kernel init
| | 
| | M	src/libshogun/kernel/CombinedKernel.cpp
| |   
* | commit 103fa81e35b235d360ceaefb0770c3d8955078bf
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 2 13:52:01 2009 +0000
| | 
| |     fix off by one bug
| | 
| | M	src/libshogun/kernel/CombinedKernel.h
| |   
* | commit 5c537f61c830d997072c64eddce7bddf7bd0a8a9
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 2 06:59:18 2009 +0000
| | 
| |     now features can be embedded into WORD/ULONG immediately without the need for an extra convert cmd, e.g.
| |     
| |     sg('add_features','TRAIN',{x},'DNAWORD', 3, 'from_position_list', 4, int32([0,1,2,3,4]));
| | 
| | M	src/libshogun/base/SGObject.h
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/lib/io.cpp
| | M	src/libshogun/lib/io.h
| | M	src/libshogunui/GUIKernel.cpp
| | M	src/libshogunui/SGInterface.cpp
| | M	src/libshogunui/SGInterface.h
| |   
* | commit 3ed306b0f3e9aa41089ea42eaaf46e2f7acc4df2
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 1 09:05:01 2009 +0000
| | 
| |     fix a crasher when set_kernel is used followed by add_kernel
| | 
| | M	src/libshogunui/GUIKernel.cpp
| |   
* | commit f05057448fabb7a2f86d24e2adab6ec9e3945f64
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 1 08:51:50 2009 +0000
| | 
| |     remove commands from_position_list and slide_window and move functionallity into set/add_features, e.g.:
| |     
| |     x='CATCTGACGTCAGGTACGTACGGCGTGGGCATCATG';
| |     sg('add_features','TRAIN',{x},'DNA', 'slide_window', 4, 1,0);
| |     sg('add_features','TRAIN',{x},'DNA', 'from_position_list', 4, int32([0,1,2,3,4]), 1);
| | 
| | M	src/CONTRIBUTIONS
| | M	src/libshogunui/GUICommands.h
| | M	src/libshogunui/GUIFeatures.cpp
| | M	src/libshogunui/GUIFeatures.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/libshogunui/SGInterface.h
| |   
* | commit b5a3dc56b1e3dcfbac99d725151d1bda2a16471f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun May 31 06:08:18 2009 +0000
| | 
| |     fix a couple of memory leaks
| | 
| | M	src/libshogun/classifier/svm/MCSVM.cpp
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| | M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 8941688428bd1fd0a8c155c9eedb0f9dd078811e
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Sat May 30 17:50:25 2009 +0000
| | 
| |     disabled some experimental code
| | 
| | M	src/libshogun/structure/DynProg.cpp
| |   
* | commit 6d8beaf496f4d71a491f0487fee02a4aff7c6ad9
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Sat May 30 15:28:44 2009 +0000
| | 
| |     compile fixes ...
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| |   
* | commit 85a76e33441fa5e08f7c3ef01c784fad2de7b41f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 29 17:50:11 2009 +0000
| | 
| |     further mkl restructuring
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| |   
* | commit 8c98f10dae6c64461c0e3764c92b75ee6e68bd27
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 28 20:17:35 2009 +0000
| | 
| |     MCSVM seems to work OK now
| | 
| | M	src/libshogun/classifier/svm/MCSVM.cpp
| | M	src/libshogun/classifier/svm/MultiClassSVM.h
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| | M	src/libshogunui/GUIClassifier.cpp
| |   
* | commit 77182de4cb7fbad6abe46cdf0c0b1a02044a5c15
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 28 19:42:51 2009 +0000
| | 
| |     add debug code
| | 
| | M	src/libshogun/classifier/svm/MCSVM.cpp
| |   
* | commit 2c77e63a33f050b01de7dd80513d6df473f2dd8d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 28 17:24:37 2009 +0000
| | 
| |     more on testing
| | 
| | M	src/libshogun/classifier/svm/MCSVM.cpp
| | M	src/libshogun/classifier/svm/MCSVM.h
| | M	src/libshogun/classifier/svm/MultiClassSVM.h
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| |   
* | commit bcc6d20f2403e3ba5a42abeff20356e29c03bf20
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 28 15:07:59 2009 +0000
| | 
| |     first attempt on implementing mc-testing
| | 
| | M	src/libshogun/classifier/svm/MCSVM.cpp
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| |   
* | commit 70aea2a53359cc3582485454cbfcfc9b69a66992
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 28 09:45:31 2009 +0000
| | 
| |     starting work on passing the classifier back to shogun for testing
| | 
| | M	src/libshogun/classifier/svm/MCSVM.cpp
| | M	src/libshogun/classifier/svm/MultiClassSVM.h
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| |   
* | commit 282cad926b4e6fb9cce707b2c54e9e682ca34dfe
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 28 08:28:17 2009 +0000
| | 
| |     wrap set_subkernel_weights
| | 
| | M	src/modular/Kernel.i
| |   
* | commit 39cb4192e22af137039b94ddab0bce708100edd9
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 27 10:41:49 2009 +0000
| | 
| |     progress output / bugfixes for MCSVM
| | 
| | M	src/libshogun/classifier/Classifier.h
| | M	src/libshogun/classifier/svm/MCSVM.h
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| | M	src/libshogunui/GUIClassifier.cpp
| | M	src/libshogunui/SGInterface.cpp
| | M	src/modular/Classifier.i
| |   
* | commit 66d62120f8a727380e17347aba3cf2fe097636c1
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 27 10:16:58 2009 +0000
| | 
| |     mcsvm entry class
| | 
| | A	src/libshogun/classifier/svm/MCSVM.cpp
| | A	src/libshogun/classifier/svm/MCSVM.h
| |   
* | commit 7b62e7e684b705593981d3f30043c8c37cd742a6
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 27 10:16:02 2009 +0000
| | 
| |     merge MCSVM from multiclass branch
| | 
| | M	src/libshogun/classifier/svm/LibSVM.cpp
| | M	src/libshogun/classifier/svm/LibSVM.h
| | M	src/libshogun/classifier/svm/LibSVMMultiClass.cpp
| | M	src/libshogun/classifier/svm/LibSVMMultiClass.h
| | D	src/libshogun/classifier/svm/LibSVMNU.cpp
| | D	src/libshogun/classifier/svm/LibSVMNU.h
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| | M	src/libshogun/classifier/svm/SVM_libsvm.h
| | M	src/libshogunui/GUIClassifier.cpp
| | M	src/modular/Classifier.i
| |   
* | commit 6fab8aaf941b652c1aa2d5ba83fc68899b345804
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 27 06:20:42 2009 +0000
| | 
| |     get things to compile again and change svm_one_class_nu to svm_nu
| | 
| | M	src/NEWS
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| | M	src/libshogun/classifier/svm/MKLClassification.h
| | M	src/libshogun/classifier/svm/MKLRegression.cpp
| | M	src/libshogun/classifier/svm/MKLRegression.h
| | M	src/libshogun/classifier/svm/SVM_libsvm.h
| | M	src/libshogunui/GUIClassifier.cpp
| | M	src/libshogunui/GUIClassifier.h
| | M	src/libshogunui/GUICommands.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/libshogunui/SGInterface.h
| |   
* | commit 0bb41b513068a3c5351dcfdb7d101dd5aef606b6
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 27 05:12:15 2009 +0000
| | 
| |     starting to port mc svm, *don't use, won't compile*
| | 
| | M	src/libshogun/classifier/Classifier.h
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| | M	src/libshogunui/GUIClassifier.cpp
| |   
* | commit 49e84ef7a11b06675df492d524237de241bdda95
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 26 16:36:57 2009 +0000
| | 
| |     change soname
| | 
| | M	src/NEWS
| |   
* | commit fe5aa080a8fb14a8aea98c55bad31ceb4c049f1e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 26 16:08:50 2009 +0000
| | 
| |     allow nu svm for multiclass
| | 
| | M	src/libshogun/classifier/svm/LibSVMMultiClass.cpp
| | M	src/libshogun/classifier/svm/LibSVMMultiClass.h
| | M	src/libshogun/classifier/svm/SVM_libsvm.h
| | M	src/libshogunui/GUIClassifier.cpp
| |   
* | commit 2c41706d2972bf13665df855631b35acf8e00cf9
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Fri May 22 13:03:31 2009 +0000
| | 
| |     mem leak fixed
| | 
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 1b477c9038ab63f7d86f348ae02ba5fa07c63191
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 22 12:52:52 2009 +0000
| | 
| |     fix typo
| | 
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| |   
* | commit 9a6b71e1b650be40bb16b8753245546c15d9f12b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 22 12:35:27 2009 +0000
| | 
| |     remove debug code
| | 
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| |   
* | commit 9f6e711d0f7f55840a6815b1098c51eb5788367a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 22 12:18:56 2009 +0000
| | 
| |     a default constructor (as this change implements) is needed to get the modular interfaces to compile
| | 
| | M	src/libshogun/lib/Array2.h
| |   
* | commit f48d97c4426e4796abf42d5823cd2a4d6f466c0f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 22 11:50:52 2009 +0000
| | 
| |     fix libsvmnu
| | 
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 0a4bdd70feab9cb78776abb6958e73db7b962442
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Fri May 22 10:40:32 2009 +0000
| | 
| |     fixed finite renaming
| | 
| | M	src/libshogun/structure/DynProg.cpp
| |   
* | commit f30960ce273e954336f3ea0928637884b0b00b32
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Fri May 22 10:38:22 2009 +0000
| | 
| | M	src/libshogun/structure/DynProg.cpp
| |   
* | commit 0d2dcfb6d855503b81de3607a4844cfbb6cde278
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Fri May 22 10:32:52 2009 +0000
| | 
| |     implemented support for sparse seq arrays (untested)
| | 
| | M	src/libshogun/features/SparseFeatures.h
| | M	src/libshogun/lib/Array.h
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/GUICommands.h
| | M	src/libshogunui/GUIStructure.cpp
| | M	src/libshogunui/GUIStructure.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/libshogunui/SGInterface.h
| |   
* | commit 21c7c813b92d68764277b18b9d77e5319d647c96
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Fri May 22 10:27:50 2009 +0000
| | 
| |     cleanups and memory leak fixes
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/GUIStructure.cpp
| | M	src/libshogunui/GUIStructure.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/octave/OctaveInterface.cpp
| |   
* | commit 1d81e011477a5b334584d74910e292c9cdbe7f49
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 22 09:21:25 2009 +0000
| | 
| |     lots of compile fixes (dynprog still does not work with modular IF's)
| | 
| | M	src/libshogun/classifier/svm/LibSVMNU.cpp
| | M	src/libshogun/classifier/svm/MKLRegression.h
| | M	src/libshogun/lib/Array.h
| | M	src/libshogun/lib/Array2.h
| | M	src/libshogunui/GUIClassifier.cpp
| | M	src/libshogunui/SGInterface.cpp
| | M	src/modular/Classifier.i
| |   
* | commit 94d9333fe5f39833a3684ee9efc2fe4ef071cf00
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 20 20:49:47 2009 +0000
| | 
| |     add NU LibSVM
| | 
| | M	src/libshogun/classifier/Classifier.h
| | A	src/libshogun/classifier/svm/LibSVMNU.cpp
| | A	src/libshogun/classifier/svm/LibSVMNU.h
| | M	src/libshogunui/GUIClassifier.cpp
| | M	src/libshogunui/GUIClassifier.h
| | M	src/modular/Classifier.i
| |   
* | commit 1a810eedaf560cb36adeeb5647cf453e6765f395
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 20 05:36:28 2009 +0000
| | 
| |     fix mmxext etc detection
| | 
| | M	src/configure
| |   
* | commit 67ae10e52bbe7497234c46698b16271d8f537f98
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 20 05:28:25 2009 +0000
| | 
| |     merge mplayers recent configure cpu flag detection
| | 
| | M	src/configure
| |   
* | commit d449e13aeeff07f90dbb5bdfb303513dce825919
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 20 05:09:06 2009 +0000
| | 
| |     fix core2 detection
| | 
| | M	src/configure
| |   
* | commit 79b10c81990fedb6e14017369a28178631af7ac5
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 20 05:00:40 2009 +0000
| | 
| |     this should speedup things a lot for core2 and other recent cpus - fix cpu detection logic
| | 
| | M	src/configure
| |   
* | commit e4922b3ddca67c8625dfe343e9ef69e190910714
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Mon May 18 18:54:15 2009 +0000
| | 
| |     still buggy...
| | 
| | M	src/libshogun/structure/DynProg.cpp
| |   
* | commit d345f83322b0a3ccb2af40a5a37a3f93e4eb67bf
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Mon May 18 17:56:36 2009 +0000
| | 
| |     version without loss seems to work now.
| | 
| | M	src/libshogun/structure/DynProg.cpp
| |   
* | commit 1c120936144f03ef1a0907bacd54810c042cb517
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Mon May 18 14:56:39 2009 +0000
| | 
| |     first part of long transitions code
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogun/structure/Plif.cpp
| | M	src/libshogun/structure/Plif.h
| | M	src/libshogun/structure/PlifArray.cpp
| | M	src/libshogun/structure/PlifArray.h
| | M	src/libshogun/structure/PlifBase.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit ab2f7eaa0d820d9d4a1fcb66a22f8e2e88bed3b2
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Mon May 18 11:29:08 2009 +0000
| | 
| |     intermediate code ...
| | 
| | M	src/libshogun/lib/Array.h
| | M	src/libshogun/lib/Array2.h
| | M	src/libshogun/lib/Array3.h
| | M	src/libshogun/structure/DynProg.cpp
| |   
* | commit 00635532dfdf08cf9d8b7840152ae1b33f40f8a0
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon May 18 03:52:21 2009 +0000
| | 
| |     fix documentation, DNA is only A,C,G,T
| | 
| | M	src/libshogun/features/Alphabet.h
| |   
* | commit d1c7df0e32fd8ad48cf76591fc69adf425576e06
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Sun May 17 16:21:02 2009 +0000
| | 
| |     first changes towards a faster DynProg + conflict resolution
| | 
| | M	src/libshogun/lib/Array.h
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit b64fe29358e9b85e1a06bd6995fb472bb0f9ce6e
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Sun May 17 16:18:42 2009 +0000
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit b30908b985ae947612afacfc013dae83a5ee4d6c
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Sun May 17 12:14:47 2009 +0000
| | 
| |     one bug fix related to plifs
| |     prepared some extensions
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/Plif.h
| | M	src/libshogunui/GUIStructure.cpp
| |   
* | commit 332b0bfdb2cac7c3081d5cac9a934079e6debcf2
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Sun May 17 12:13:04 2009 +0000
| | 
| |     this is the current version of shogun which works with mGene.web
| | 
| | D	src_galaxy_branch/.authors
| | D	src_galaxy_branch/.doxy2swig.py
| | D	src_galaxy_branch/.generate_link_dependencies.py
| | D	src_galaxy_branch/.r-install.sh
| | D	src_galaxy_branch/.relpath.py
| | D	src_galaxy_branch/.scrub_docstrings.py
| | D	src_galaxy_branch/.version.sh
| | D	src_galaxy_branch/AUTHORS
| | D	src_galaxy_branch/CONTRIBUTIONS
| | D	src_galaxy_branch/COPYRIGHT
| | D	src_galaxy_branch/ChangeLog
| | D	src_galaxy_branch/INSTALL
| | D	src_galaxy_branch/LICENSE
| | D	src_galaxy_branch/LICENSE.SVMlight
| | D	src_galaxy_branch/Makefile
| | D	src_galaxy_branch/Makefile.template
| | D	src_galaxy_branch/NEWS
| | D	src_galaxy_branch/README
| | D	src_galaxy_branch/README.developer
| | D	src_galaxy_branch/README.soname
| | D	src_galaxy_branch/cmdline/CmdLineInterface.cpp
| | D	src_galaxy_branch/cmdline/CmdLineInterface.h
| | D	src_galaxy_branch/cmdline/cmdline.cpp
| | D	src_galaxy_branch/configure
| | D	src_galaxy_branch/elwms/elwms.cpp
| | D	src_galaxy_branch/libshogun/base/Parallel.cpp
| | D	src_galaxy_branch/libshogun/base/Parallel.h
| | D	src_galaxy_branch/libshogun/base/SGObject.cpp
| | D	src_galaxy_branch/libshogun/base/SGObject.h
| | D	src_galaxy_branch/libshogun/base/Version.cpp
| | D	src_galaxy_branch/libshogun/base/Version.h
| | D	src_galaxy_branch/libshogun/base/init.cpp
| | D	src_galaxy_branch/libshogun/base/init.h
| | D	src_galaxy_branch/libshogun/classifier/Classifier.cpp
| | D	src_galaxy_branch/libshogun/classifier/Classifier.h
| | D	src_galaxy_branch/libshogun/classifier/KNN.cpp
| | D	src_galaxy_branch/libshogun/classifier/KNN.h
| | D	src_galaxy_branch/libshogun/classifier/KernelPerceptron.cpp
| | D	src_galaxy_branch/libshogun/classifier/KernelPerceptron.h
| | D	src_galaxy_branch/libshogun/classifier/LDA.cpp
| | D	src_galaxy_branch/libshogun/classifier/LDA.h
| | D	src_galaxy_branch/libshogun/classifier/LPBoost.cpp
| | D	src_galaxy_branch/libshogun/classifier/LPBoost.h
| | D	src_galaxy_branch/libshogun/classifier/LPM.cpp
| | D	src_galaxy_branch/libshogun/classifier/LPM.h
| | D	src_galaxy_branch/libshogun/classifier/LinearClassifier.cpp
| | D	src_galaxy_branch/libshogun/classifier/LinearClassifier.h
| | D	src_galaxy_branch/libshogun/classifier/Perceptron.cpp
| | D	src_galaxy_branch/libshogun/classifier/Perceptron.h
| | D	src_galaxy_branch/libshogun/classifier/PluginEstimate.cpp
| | D	src_galaxy_branch/libshogun/classifier/PluginEstimate.h
| | D	src_galaxy_branch/libshogun/classifier/SubGradientLPM.cpp
| | D	src_galaxy_branch/libshogun/classifier/SubGradientLPM.h
| | D	src_galaxy_branch/libshogun/classifier/__init__.py
| | D	src_galaxy_branch/libshogun/classifier/svm/CPLEXSVM.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/CPLEXSVM.h
| | D	src_galaxy_branch/libshogun/classifier/svm/GMNPSVM.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/GMNPSVM.h
| | D	src_galaxy_branch/libshogun/classifier/svm/GNPPSVM.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/GNPPSVM.h
| | D	src_galaxy_branch/libshogun/classifier/svm/GPBTSVM.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/GPBTSVM.h
| | D	src_galaxy_branch/libshogun/classifier/svm/LibLinear.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/LibLinear.h
| | D	src_galaxy_branch/libshogun/classifier/svm/LibSVM.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/LibSVM.h
| | D	src_galaxy_branch/libshogun/classifier/svm/LibSVMMultiClass.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/LibSVMMultiClass.h
| | D	src_galaxy_branch/libshogun/classifier/svm/LibSVMOneClass.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/LibSVMOneClass.h
| | D	src_galaxy_branch/libshogun/classifier/svm/MPDSVM.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/MPDSVM.h
| | D	src_galaxy_branch/libshogun/classifier/svm/MultiClassSVM.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/MultiClassSVM.h
| | D	src_galaxy_branch/libshogun/classifier/svm/SVM.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/SVM.h
| | D	src_galaxy_branch/libshogun/classifier/svm/SVMLin.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/SVMLin.h
| | D	src_galaxy_branch/libshogun/classifier/svm/SVMOcas.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/SVMOcas.h
| | D	src_galaxy_branch/libshogun/classifier/svm/SVMSGD.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/SVMSGD.h
| | D	src_galaxy_branch/libshogun/classifier/svm/SVM_libsvm.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/SVM_libsvm.h
| | D	src_galaxy_branch/libshogun/classifier/svm/SVM_light.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/SVM_light.h
| | D	src_galaxy_branch/libshogun/classifier/svm/SVM_linear.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/SVM_linear.h
| | D	src_galaxy_branch/libshogun/classifier/svm/SubGradientSVM.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/SubGradientSVM.h
| | D	src_galaxy_branch/libshogun/classifier/svm/Tron.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/Tron.h
| | D	src_galaxy_branch/libshogun/classifier/svm/WDSVMOcas.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/WDSVMOcas.h
| | D	src_galaxy_branch/libshogun/classifier/svm/__init__.py
| | D	src_galaxy_branch/libshogun/classifier/svm/gmnplib.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/gmnplib.h
| | D	src_galaxy_branch/libshogun/classifier/svm/gmnpmkl.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/gmnpmkl.h
| | D	src_galaxy_branch/libshogun/classifier/svm/gnpplib.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/gnpplib.h
| | D	src_galaxy_branch/libshogun/classifier/svm/gpdt.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/gpdt.h
| | D	src_galaxy_branch/libshogun/classifier/svm/gpdtsolve.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/gpdtsolve.h
| | D	src_galaxy_branch/libshogun/classifier/svm/gpm.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/gpm.h
| | D	src_galaxy_branch/libshogun/classifier/svm/libocas.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/libocas.h
| | D	src_galaxy_branch/libshogun/classifier/svm/libocas_common.h
| | D	src_galaxy_branch/libshogun/classifier/svm/pr_loqo.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/pr_loqo.h
| | D	src_galaxy_branch/libshogun/classifier/svm/qpbsvmlib.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/qpbsvmlib.h
| | D	src_galaxy_branch/libshogun/classifier/svm/qpssvmlib.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/qpssvmlib.h
| | D	src_galaxy_branch/libshogun/classifier/svm/ssl.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/ssl.h
| | D	src_galaxy_branch/libshogun/clustering/Hierarchical.cpp
| | D	src_galaxy_branch/libshogun/clustering/Hierarchical.h
| | D	src_galaxy_branch/libshogun/clustering/KMeans.cpp
| | D	src_galaxy_branch/libshogun/clustering/KMeans.h
| | D	src_galaxy_branch/libshogun/distance/BrayCurtisDistance.cpp
| | D	src_galaxy_branch/libshogun/distance/BrayCurtisDistance.h
| | D	src_galaxy_branch/libshogun/distance/CanberraMetric.cpp
| | D	src_galaxy_branch/libshogun/distance/CanberraMetric.h
| | D	src_galaxy_branch/libshogun/distance/CanberraWordDistance.cpp
| | D	src_galaxy_branch/libshogun/distance/CanberraWordDistance.h
| | D	src_galaxy_branch/libshogun/distance/ChebyshewMetric.cpp
| | D	src_galaxy_branch/libshogun/distance/ChebyshewMetric.h
| | D	src_galaxy_branch/libshogun/distance/ChiSquareDistance.cpp
| | D	src_galaxy_branch/libshogun/distance/ChiSquareDistance.h
| | D	src_galaxy_branch/libshogun/distance/CosineDistance.cpp
| | D	src_galaxy_branch/libshogun/distance/CosineDistance.h
| | D	src_galaxy_branch/libshogun/distance/Distance.cpp
| | D	src_galaxy_branch/libshogun/distance/Distance.h
| | D	src_galaxy_branch/libshogun/distance/DistanceMachine.cpp
| | D	src_galaxy_branch/libshogun/distance/DistanceMachine.h
| | D	src_galaxy_branch/libshogun/distance/EuclidianDistance.cpp
| | D	src_galaxy_branch/libshogun/distance/EuclidianDistance.h
| | D	src_galaxy_branch/libshogun/distance/GeodesicMetric.cpp
| | D	src_galaxy_branch/libshogun/distance/GeodesicMetric.h
| | D	src_galaxy_branch/libshogun/distance/HammingWordDistance.cpp
| | D	src_galaxy_branch/libshogun/distance/HammingWordDistance.h
| | D	src_galaxy_branch/libshogun/distance/JensenMetric.cpp
| | D	src_galaxy_branch/libshogun/distance/JensenMetric.h
| | D	src_galaxy_branch/libshogun/distance/ManhattanMetric.cpp
| | D	src_galaxy_branch/libshogun/distance/ManhattanMetric.h
| | D	src_galaxy_branch/libshogun/distance/ManhattanWordDistance.cpp
| | D	src_galaxy_branch/libshogun/distance/ManhattanWordDistance.h
| | D	src_galaxy_branch/libshogun/distance/MinkowskiMetric.cpp
| | D	src_galaxy_branch/libshogun/distance/MinkowskiMetric.h
| | D	src_galaxy_branch/libshogun/distance/RealDistance.h
| | D	src_galaxy_branch/libshogun/distance/SimpleDistance.h
| | D	src_galaxy_branch/libshogun/distance/SparseDistance.h
| | D	src_galaxy_branch/libshogun/distance/SparseEuclidianDistance.cpp
| | D	src_galaxy_branch/libshogun/distance/SparseEuclidianDistance.h
| | D	src_galaxy_branch/libshogun/distance/StringDistance.h
| | D	src_galaxy_branch/libshogun/distance/TanimotoDistance.cpp
| | D	src_galaxy_branch/libshogun/distance/TanimotoDistance.h
| | D	src_galaxy_branch/libshogun/distributions/Distribution.cpp
| | D	src_galaxy_branch/libshogun/distributions/Distribution.h
| | D	src_galaxy_branch/libshogun/distributions/histogram/Histogram.cpp
| | D	src_galaxy_branch/libshogun/distributions/histogram/Histogram.h
| | D	src_galaxy_branch/libshogun/distributions/hmm/GHMM.cpp
| | D	src_galaxy_branch/libshogun/distributions/hmm/GHMM.h
| | D	src_galaxy_branch/libshogun/distributions/hmm/HMM.cpp
| | D	src_galaxy_branch/libshogun/distributions/hmm/HMM.h
| | D	src_galaxy_branch/libshogun/distributions/hmm/LinearHMM.cpp
| | D	src_galaxy_branch/libshogun/distributions/hmm/LinearHMM.h
| | D	src_galaxy_branch/libshogun/evaluation/PerformanceMeasures.cpp
| | D	src_galaxy_branch/libshogun/evaluation/PerformanceMeasures.h
| | D	src_galaxy_branch/libshogun/features/Alphabet.cpp
| | D	src_galaxy_branch/libshogun/features/Alphabet.h
| | D	src_galaxy_branch/libshogun/features/AttributeFeatures.cpp
| | D	src_galaxy_branch/libshogun/features/AttributeFeatures.h
| | D	src_galaxy_branch/libshogun/features/CombinedDotFeatures.cpp
| | D	src_galaxy_branch/libshogun/features/CombinedDotFeatures.h
| | D	src_galaxy_branch/libshogun/features/CombinedFeatures.cpp
| | D	src_galaxy_branch/libshogun/features/CombinedFeatures.h
| | D	src_galaxy_branch/libshogun/features/DotFeatures.cpp
| | D	src_galaxy_branch/libshogun/features/DotFeatures.h
| | D	src_galaxy_branch/libshogun/features/DummyFeatures.h
| | D	src_galaxy_branch/libshogun/features/ExplicitSpecFeatures.cpp
| | D	src_galaxy_branch/libshogun/features/ExplicitSpecFeatures.h
| | D	src_galaxy_branch/libshogun/features/FKFeatures.cpp
| | D	src_galaxy_branch/libshogun/features/FKFeatures.h
| | D	src_galaxy_branch/libshogun/features/Features.cpp
| | D	src_galaxy_branch/libshogun/features/Features.h
| | D	src_galaxy_branch/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| | D	src_galaxy_branch/libshogun/features/ImplicitWeightedSpecFeatures.h
| | D	src_galaxy_branch/libshogun/features/Labels.cpp
| | D	src_galaxy_branch/libshogun/features/Labels.h
| | D	src_galaxy_branch/libshogun/features/MindyGramFeatures.cpp
| | D	src_galaxy_branch/libshogun/features/MindyGramFeatures.h
| | D	src_galaxy_branch/libshogun/features/RealFileFeatures.cpp
| | D	src_galaxy_branch/libshogun/features/RealFileFeatures.h
| | D	src_galaxy_branch/libshogun/features/SimpleFeatures.h
| | D	src_galaxy_branch/libshogun/features/SparseFeatures.h
| | D	src_galaxy_branch/libshogun/features/StringFeatures.h
| | D	src_galaxy_branch/libshogun/features/TOPFeatures.cpp
| | D	src_galaxy_branch/libshogun/features/TOPFeatures.h
| | D	src_galaxy_branch/libshogun/features/WDFeatures.cpp
| | D	src_galaxy_branch/libshogun/features/WDFeatures.h
| | D	src_galaxy_branch/libshogun/features/__init__.py
| | D	src_galaxy_branch/libshogun/kernel/AUCKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/AUCKernel.h
| | D	src_galaxy_branch/libshogun/kernel/AvgDiagKernelNormalizer.h
| | D	src_galaxy_branch/libshogun/kernel/Chi2Kernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/Chi2Kernel.h
| | D	src_galaxy_branch/libshogun/kernel/CombinedKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/CombinedKernel.h
| | D	src_galaxy_branch/libshogun/kernel/CommUlongStringKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/CommUlongStringKernel.h
| | D	src_galaxy_branch/libshogun/kernel/CommWordStringKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/CommWordStringKernel.h
| | D	src_galaxy_branch/libshogun/kernel/ConstKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/ConstKernel.h
| | D	src_galaxy_branch/libshogun/kernel/CustomKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/CustomKernel.h
| | D	src_galaxy_branch/libshogun/kernel/DiagKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/DiagKernel.h
| | D	src_galaxy_branch/libshogun/kernel/DiceKernelNormalizer.h
| | D	src_galaxy_branch/libshogun/kernel/DistanceKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/DistanceKernel.h
| | D	src_galaxy_branch/libshogun/kernel/FirstElementKernelNormalizer.h
| | D	src_galaxy_branch/libshogun/kernel/FixedDegreeStringKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/FixedDegreeStringKernel.h
| | D	src_galaxy_branch/libshogun/kernel/GaussianKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/GaussianKernel.h
| | D	src_galaxy_branch/libshogun/kernel/GaussianShiftKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/GaussianShiftKernel.h
| | D	src_galaxy_branch/libshogun/kernel/GaussianShortRealKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/GaussianShortRealKernel.h
| | D	src_galaxy_branch/libshogun/kernel/HistogramWordStringKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/HistogramWordStringKernel.h
| | D	src_galaxy_branch/libshogun/kernel/IdentityKernelNormalizer.h
| | D	src_galaxy_branch/libshogun/kernel/Kernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/Kernel.h
| | D	src_galaxy_branch/libshogun/kernel/KernelMachine.cpp
| | D	src_galaxy_branch/libshogun/kernel/KernelMachine.h
| | D	src_galaxy_branch/libshogun/kernel/KernelNormalizer.h
| | D	src_galaxy_branch/libshogun/kernel/LinearByteKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/LinearByteKernel.h
| | D	src_galaxy_branch/libshogun/kernel/LinearKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/LinearKernel.h
| | D	src_galaxy_branch/libshogun/kernel/LinearStringKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/LinearStringKernel.h
| | D	src_galaxy_branch/libshogun/kernel/LinearWordKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/LinearWordKernel.h
| | D	src_galaxy_branch/libshogun/kernel/LocalAlignmentStringKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/LocalAlignmentStringKernel.h
| | D	src_galaxy_branch/libshogun/kernel/LocalityImprovedStringKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/LocalityImprovedStringKernel.h
| | D	src_galaxy_branch/libshogun/kernel/MatchWordStringKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/MatchWordStringKernel.h
| | D	src_galaxy_branch/libshogun/kernel/MindyGramKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/MindyGramKernel.h
| | D	src_galaxy_branch/libshogun/kernel/OligoStringKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/OligoStringKernel.h
| | D	src_galaxy_branch/libshogun/kernel/PolyKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/PolyKernel.h
| | D	src_galaxy_branch/libshogun/kernel/PolyMatchStringKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/PolyMatchStringKernel.h
| | D	src_galaxy_branch/libshogun/kernel/PolyMatchWordStringKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/PolyMatchWordStringKernel.h
| | D	src_galaxy_branch/libshogun/kernel/PyramidChi2.cpp
| | D	src_galaxy_branch/libshogun/kernel/PyramidChi2.h
| | D	src_galaxy_branch/libshogun/kernel/SalzbergWordStringKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/SalzbergWordStringKernel.h
| | D	src_galaxy_branch/libshogun/kernel/SigmoidKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/SigmoidKernel.h
| | D	src_galaxy_branch/libshogun/kernel/SimpleKernel.h
| | D	src_galaxy_branch/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
| | D	src_galaxy_branch/libshogun/kernel/SparseGaussianKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/SparseGaussianKernel.h
| | D	src_galaxy_branch/libshogun/kernel/SparseKernel.h
| | D	src_galaxy_branch/libshogun/kernel/SparseLinearKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/SparseLinearKernel.h
| | D	src_galaxy_branch/libshogun/kernel/SparsePolyKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/SparsePolyKernel.h
| | D	src_galaxy_branch/libshogun/kernel/SqrtDiagKernelNormalizer.h
| | D	src_galaxy_branch/libshogun/kernel/StringKernel.h
| | D	src_galaxy_branch/libshogun/kernel/TanimotoKernelNormalizer.h
| | D	src_galaxy_branch/libshogun/kernel/TensorProductPairKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/TensorProductPairKernel.h
| | D	src_galaxy_branch/libshogun/kernel/WeightedCommWordStringKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/WeightedCommWordStringKernel.h
| | D	src_galaxy_branch/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/WeightedDegreePositionStringKernel.h
| | D	src_galaxy_branch/libshogun/kernel/WeightedDegreeStringKernel.cpp
| | D	src_galaxy_branch/libshogun/kernel/WeightedDegreeStringKernel.h
| | D	src_galaxy_branch/libshogun/kernel/__init__.py
| | D	src_galaxy_branch/libshogun/lib/Array.h
| | D	src_galaxy_branch/libshogun/lib/Array2.h
| | D	src_galaxy_branch/libshogun/lib/Array3.h
| | D	src_galaxy_branch/libshogun/lib/BitString.h
| | D	src_galaxy_branch/libshogun/lib/Cache.h
| | D	src_galaxy_branch/libshogun/lib/Cplex.cpp
| | D	src_galaxy_branch/libshogun/lib/Cplex.h
| | D	src_galaxy_branch/libshogun/lib/DynInt.h
| | D	src_galaxy_branch/libshogun/lib/DynamicArray.h
| | D	src_galaxy_branch/libshogun/lib/File.cpp
| | D	src_galaxy_branch/libshogun/lib/File.h
| | D	src_galaxy_branch/libshogun/lib/List.h
| | D	src_galaxy_branch/libshogun/lib/Mathematics.cpp
| | D	src_galaxy_branch/libshogun/lib/Mathematics.h
| | D	src_galaxy_branch/libshogun/lib/MemoryMappedFile.h
| | D	src_galaxy_branch/libshogun/lib/ShogunException.cpp
| | D	src_galaxy_branch/libshogun/lib/ShogunException.h
| | D	src_galaxy_branch/libshogun/lib/Signal.cpp
| | D	src_galaxy_branch/libshogun/lib/Signal.h
| | D	src_galaxy_branch/libshogun/lib/SimpleFile.h
| | D	src_galaxy_branch/libshogun/lib/Time.cpp
| | D	src_galaxy_branch/libshogun/lib/Time.h
| | D	src_galaxy_branch/libshogun/lib/Trie.cpp
| | D	src_galaxy_branch/libshogun/lib/Trie.h
| | D	src_galaxy_branch/libshogun/lib/__init__.py
| | D	src_galaxy_branch/libshogun/lib/common.h
| | D	src_galaxy_branch/libshogun/lib/io.cpp
| | D	src_galaxy_branch/libshogun/lib/io.h
| | D	src_galaxy_branch/libshogun/lib/lapack.cpp
| | D	src_galaxy_branch/libshogun/lib/lapack.h
| | D	src_galaxy_branch/libshogun/lib/memory.cpp
| | D	src_galaxy_branch/libshogun/lib/memory.h
| | D	src_galaxy_branch/libshogun/preproc/LogPlusOne.cpp
| | D	src_galaxy_branch/libshogun/preproc/LogPlusOne.h
| | D	src_galaxy_branch/libshogun/preproc/NormDerivativeLem3.cpp
| | D	src_galaxy_branch/libshogun/preproc/NormDerivativeLem3.h
| | D	src_galaxy_branch/libshogun/preproc/NormOne.cpp
| | D	src_galaxy_branch/libshogun/preproc/NormOne.h
| | D	src_galaxy_branch/libshogun/preproc/PCACut.cpp
| | D	src_galaxy_branch/libshogun/preproc/PCACut.h
| | D	src_galaxy_branch/libshogun/preproc/PreProc.cpp
| | D	src_galaxy_branch/libshogun/preproc/PreProc.h
| | D	src_galaxy_branch/libshogun/preproc/PruneVarSubMean.cpp
| | D	src_galaxy_branch/libshogun/preproc/PruneVarSubMean.h
| | D	src_galaxy_branch/libshogun/preproc/SimplePreProc.h
| | D	src_galaxy_branch/libshogun/preproc/SortUlongString.cpp
| | D	src_galaxy_branch/libshogun/preproc/SortUlongString.h
| | D	src_galaxy_branch/libshogun/preproc/SortWordString.cpp
| | D	src_galaxy_branch/libshogun/preproc/SortWordString.h
| | D	src_galaxy_branch/libshogun/preproc/SparsePreProc.h
| | D	src_galaxy_branch/libshogun/preproc/StringPreProc.h
| | D	src_galaxy_branch/libshogun/regression/KRR.cpp
| | D	src_galaxy_branch/libshogun/regression/KRR.h
| | D	src_galaxy_branch/libshogun/regression/Regression.h
| | D	src_galaxy_branch/libshogun/regression/svr/LibSVR.cpp
| | D	src_galaxy_branch/libshogun/regression/svr/LibSVR.h
| | D	src_galaxy_branch/libshogun/regression/svr/SVR_light.cpp
| | D	src_galaxy_branch/libshogun/regression/svr/SVR_light.h
| | D	src_galaxy_branch/libshogun/structure/DynProg.cpp
| | D	src_galaxy_branch/libshogun/structure/DynProg.h
| | D	src_galaxy_branch/libshogun/structure/Plif.cpp
| | D	src_galaxy_branch/libshogun/structure/Plif.h
| | D	src_galaxy_branch/libshogun/structure/PlifArray.cpp
| | D	src_galaxy_branch/libshogun/structure/PlifArray.h
| | D	src_galaxy_branch/libshogun/structure/PlifBase.h
| | D	src_galaxy_branch/libshogunui/GUIClassifier.cpp
| | D	src_galaxy_branch/libshogunui/GUIClassifier.h
| | D	src_galaxy_branch/libshogunui/GUICommands.h
| | D	src_galaxy_branch/libshogunui/GUIDistance.cpp
| | D	src_galaxy_branch/libshogunui/GUIDistance.h
| | D	src_galaxy_branch/libshogunui/GUIFeatures.cpp
| | D	src_galaxy_branch/libshogunui/GUIFeatures.h
| | D	src_galaxy_branch/libshogunui/GUIHMM.cpp
| | D	src_galaxy_branch/libshogunui/GUIHMM.h
| | D	src_galaxy_branch/libshogunui/GUIKernel.cpp
| | D	src_galaxy_branch/libshogunui/GUIKernel.h
| | D	src_galaxy_branch/libshogunui/GUILabels.cpp
| | D	src_galaxy_branch/libshogunui/GUILabels.h
| | D	src_galaxy_branch/libshogunui/GUIMath.cpp
| | D	src_galaxy_branch/libshogunui/GUIMath.h
| | D	src_galaxy_branch/libshogunui/GUIPluginEstimate.cpp
| | D	src_galaxy_branch/libshogunui/GUIPluginEstimate.h
| | D	src_galaxy_branch/libshogunui/GUIPreProc.cpp
| | D	src_galaxy_branch/libshogunui/GUIPreProc.h
| | D	src_galaxy_branch/libshogunui/GUIStructure.cpp
| | D	src_galaxy_branch/libshogunui/GUIStructure.h
| | D	src_galaxy_branch/libshogunui/GUITime.cpp
| | D	src_galaxy_branch/libshogunui/GUITime.h
| | D	src_galaxy_branch/libshogunui/SGInterface.cpp
| | D	src_galaxy_branch/libshogunui/SGInterface.h
| | D	src_galaxy_branch/libshogunui/SyntaxHighLight.h
| | D	src_galaxy_branch/matlab/MatlabInterface.cpp
| | D	src_galaxy_branch/matlab/MatlabInterface.h
| | D	src_galaxy_branch/modular/Classifier.doxy
| | D	src_galaxy_branch/modular/Classifier.i
| | D	src_galaxy_branch/modular/Clustering.doxy
| | D	src_galaxy_branch/modular/Clustering.i
| | D	src_galaxy_branch/modular/Distance.doxy
| | D	src_galaxy_branch/modular/Distance.i
| | D	src_galaxy_branch/modular/Distribution.doxy
| | D	src_galaxy_branch/modular/Distribution.i
| | D	src_galaxy_branch/modular/Evaluation.doxy
| | D	src_galaxy_branch/modular/Evaluation.i
| | D	src_galaxy_branch/modular/Features.doxy
| | D	src_galaxy_branch/modular/Features.i
| | D	src_galaxy_branch/modular/Kernel.doxy
| | D	src_galaxy_branch/modular/Kernel.i
| | D	src_galaxy_branch/modular/Library.doxy
| | D	src_galaxy_branch/modular/Library.i
| | D	src_galaxy_branch/modular/PreProc.doxy
| | D	src_galaxy_branch/modular/PreProc.i
| | D	src_galaxy_branch/modular/Regression.doxy
| | D	src_galaxy_branch/modular/Regression.i
| | D	src_galaxy_branch/modular/SGBase.i
| | D	src_galaxy_branch/modular/Structure.doxy
| | D	src_galaxy_branch/modular/Structure.i
| | D	src_galaxy_branch/octave/OctaveInterface.cpp
| | D	src_galaxy_branch/octave/OctaveInterface.h
| | D	src_galaxy_branch/octave_modular/sg_print_functions.cpp
| | D	src_galaxy_branch/octave_modular/swig_typemaps.i
| | D	src_galaxy_branch/python/PythonInterface.cpp
| | D	src_galaxy_branch/python/PythonInterface.h
| | D	src_galaxy_branch/python_modular/sg_print_functions.cpp
| | D	src_galaxy_branch/python_modular/swig_typemaps.i
| | D	src_galaxy_branch/r/RInterface.cpp
| | D	src_galaxy_branch/r/RInterface.h
| | D	src_galaxy_branch/r_modular/sg_print_functions.cpp
| | D	src_galaxy_branch/r_modular/swig_typemaps.i
| |   
* | commit 773fb2b245b94e77fdb1985d86e00c456b5b8b19
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Sun May 17 12:04:45 2009 +0000
| | 
| | A	src_galaxy_branch/.authors
| | A	src_galaxy_branch/.doxy2swig.py
| | A	src_galaxy_branch/.generate_link_dependencies.py
| | A	src_galaxy_branch/.r-install.sh
| | A	src_galaxy_branch/.relpath.py
| | A	src_galaxy_branch/.scrub_docstrings.py
| | A	src_galaxy_branch/.version.sh
| | A	src_galaxy_branch/AUTHORS
| | A	src_galaxy_branch/CONTRIBUTIONS
| | A	src_galaxy_branch/COPYRIGHT
| | A	src_galaxy_branch/ChangeLog
| | A	src_galaxy_branch/INSTALL
| | A	src_galaxy_branch/LICENSE
| | A	src_galaxy_branch/LICENSE.SVMlight
| | A	src_galaxy_branch/Makefile
| | A	src_galaxy_branch/Makefile.template
| | A	src_galaxy_branch/NEWS
| | A	src_galaxy_branch/README
| | A	src_galaxy_branch/README.developer
| | A	src_galaxy_branch/README.soname
| | A	src_galaxy_branch/cmdline/CmdLineInterface.cpp
| | A	src_galaxy_branch/cmdline/CmdLineInterface.h
| | A	src_galaxy_branch/cmdline/cmdline.cpp
| | A	src_galaxy_branch/configure
| | A	src_galaxy_branch/elwms/elwms.cpp
| | A	src_galaxy_branch/libshogun/base/Parallel.cpp
| | A	src_galaxy_branch/libshogun/base/Parallel.h
| | A	src_galaxy_branch/libshogun/base/SGObject.cpp
| | A	src_galaxy_branch/libshogun/base/SGObject.h
| | A	src_galaxy_branch/libshogun/base/Version.cpp
| | A	src_galaxy_branch/libshogun/base/Version.h
| | A	src_galaxy_branch/libshogun/base/init.cpp
| | A	src_galaxy_branch/libshogun/base/init.h
| | A	src_galaxy_branch/libshogun/classifier/Classifier.cpp
| | A	src_galaxy_branch/libshogun/classifier/Classifier.h
| | A	src_galaxy_branch/libshogun/classifier/KNN.cpp
| | A	src_galaxy_branch/libshogun/classifier/KNN.h
| | A	src_galaxy_branch/libshogun/classifier/KernelPerceptron.cpp
| | A	src_galaxy_branch/libshogun/classifier/KernelPerceptron.h
| | A	src_galaxy_branch/libshogun/classifier/LDA.cpp
| | A	src_galaxy_branch/libshogun/classifier/LDA.h
| | A	src_galaxy_branch/libshogun/classifier/LPBoost.cpp
| | A	src_galaxy_branch/libshogun/classifier/LPBoost.h
| | A	src_galaxy_branch/libshogun/classifier/LPM.cpp
| | A	src_galaxy_branch/libshogun/classifier/LPM.h
| | A	src_galaxy_branch/libshogun/classifier/LinearClassifier.cpp
| | A	src_galaxy_branch/libshogun/classifier/LinearClassifier.h
| | A	src_galaxy_branch/libshogun/classifier/Perceptron.cpp
| | A	src_galaxy_branch/libshogun/classifier/Perceptron.h
| | A	src_galaxy_branch/libshogun/classifier/PluginEstimate.cpp
| | A	src_galaxy_branch/libshogun/classifier/PluginEstimate.h
| | A	src_galaxy_branch/libshogun/classifier/SubGradientLPM.cpp
| | A	src_galaxy_branch/libshogun/classifier/SubGradientLPM.h
| | A	src_galaxy_branch/libshogun/classifier/__init__.py
| | A	src_galaxy_branch/libshogun/classifier/svm/CPLEXSVM.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/CPLEXSVM.h
| | A	src_galaxy_branch/libshogun/classifier/svm/GMNPSVM.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/GMNPSVM.h
| | A	src_galaxy_branch/libshogun/classifier/svm/GNPPSVM.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/GNPPSVM.h
| | A	src_galaxy_branch/libshogun/classifier/svm/GPBTSVM.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/GPBTSVM.h
| | A	src_galaxy_branch/libshogun/classifier/svm/LibLinear.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/LibLinear.h
| | A	src_galaxy_branch/libshogun/classifier/svm/LibSVM.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/LibSVM.h
| | A	src_galaxy_branch/libshogun/classifier/svm/LibSVMMultiClass.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/LibSVMMultiClass.h
| | A	src_galaxy_branch/libshogun/classifier/svm/LibSVMOneClass.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/LibSVMOneClass.h
| | A	src_galaxy_branch/libshogun/classifier/svm/MPDSVM.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/MPDSVM.h
| | A	src_galaxy_branch/libshogun/classifier/svm/MultiClassSVM.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/MultiClassSVM.h
| | A	src_galaxy_branch/libshogun/classifier/svm/SVM.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/SVM.h
| | A	src_galaxy_branch/libshogun/classifier/svm/SVMLin.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/SVMLin.h
| | A	src_galaxy_branch/libshogun/classifier/svm/SVMOcas.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/SVMOcas.h
| | A	src_galaxy_branch/libshogun/classifier/svm/SVMSGD.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/SVMSGD.h
| | A	src_galaxy_branch/libshogun/classifier/svm/SVM_libsvm.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/SVM_libsvm.h
| | A	src_galaxy_branch/libshogun/classifier/svm/SVM_light.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/SVM_light.h
| | A	src_galaxy_branch/libshogun/classifier/svm/SVM_linear.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/SVM_linear.h
| | A	src_galaxy_branch/libshogun/classifier/svm/SubGradientSVM.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/SubGradientSVM.h
| | A	src_galaxy_branch/libshogun/classifier/svm/Tron.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/Tron.h
| | A	src_galaxy_branch/libshogun/classifier/svm/WDSVMOcas.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/WDSVMOcas.h
| | A	src_galaxy_branch/libshogun/classifier/svm/__init__.py
| | A	src_galaxy_branch/libshogun/classifier/svm/gmnplib.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/gmnplib.h
| | A	src_galaxy_branch/libshogun/classifier/svm/gmnpmkl.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/gmnpmkl.h
| | A	src_galaxy_branch/libshogun/classifier/svm/gnpplib.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/gnpplib.h
| | A	src_galaxy_branch/libshogun/classifier/svm/gpdt.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/gpdt.h
| | A	src_galaxy_branch/libshogun/classifier/svm/gpdtsolve.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/gpdtsolve.h
| | A	src_galaxy_branch/libshogun/classifier/svm/gpm.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/gpm.h
| | A	src_galaxy_branch/libshogun/classifier/svm/libocas.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/libocas.h
| | A	src_galaxy_branch/libshogun/classifier/svm/libocas_common.h
| | A	src_galaxy_branch/libshogun/classifier/svm/pr_loqo.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/pr_loqo.h
| | A	src_galaxy_branch/libshogun/classifier/svm/qpbsvmlib.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/qpbsvmlib.h
| | A	src_galaxy_branch/libshogun/classifier/svm/qpssvmlib.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/qpssvmlib.h
| | A	src_galaxy_branch/libshogun/classifier/svm/ssl.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/ssl.h
| | A	src_galaxy_branch/libshogun/clustering/Hierarchical.cpp
| | A	src_galaxy_branch/libshogun/clustering/Hierarchical.h
| | A	src_galaxy_branch/libshogun/clustering/KMeans.cpp
| | A	src_galaxy_branch/libshogun/clustering/KMeans.h
| | A	src_galaxy_branch/libshogun/distance/BrayCurtisDistance.cpp
| | A	src_galaxy_branch/libshogun/distance/BrayCurtisDistance.h
| | A	src_galaxy_branch/libshogun/distance/CanberraMetric.cpp
| | A	src_galaxy_branch/libshogun/distance/CanberraMetric.h
| | A	src_galaxy_branch/libshogun/distance/CanberraWordDistance.cpp
| | A	src_galaxy_branch/libshogun/distance/CanberraWordDistance.h
| | A	src_galaxy_branch/libshogun/distance/ChebyshewMetric.cpp
| | A	src_galaxy_branch/libshogun/distance/ChebyshewMetric.h
| | A	src_galaxy_branch/libshogun/distance/ChiSquareDistance.cpp
| | A	src_galaxy_branch/libshogun/distance/ChiSquareDistance.h
| | A	src_galaxy_branch/libshogun/distance/CosineDistance.cpp
| | A	src_galaxy_branch/libshogun/distance/CosineDistance.h
| | A	src_galaxy_branch/libshogun/distance/Distance.cpp
| | A	src_galaxy_branch/libshogun/distance/Distance.h
| | A	src_galaxy_branch/libshogun/distance/DistanceMachine.cpp
| | A	src_galaxy_branch/libshogun/distance/DistanceMachine.h
| | A	src_galaxy_branch/libshogun/distance/EuclidianDistance.cpp
| | A	src_galaxy_branch/libshogun/distance/EuclidianDistance.h
| | A	src_galaxy_branch/libshogun/distance/GeodesicMetric.cpp
| | A	src_galaxy_branch/libshogun/distance/GeodesicMetric.h
| | A	src_galaxy_branch/libshogun/distance/HammingWordDistance.cpp
| | A	src_galaxy_branch/libshogun/distance/HammingWordDistance.h
| | A	src_galaxy_branch/libshogun/distance/JensenMetric.cpp
| | A	src_galaxy_branch/libshogun/distance/JensenMetric.h
| | A	src_galaxy_branch/libshogun/distance/ManhattanMetric.cpp
| | A	src_galaxy_branch/libshogun/distance/ManhattanMetric.h
| | A	src_galaxy_branch/libshogun/distance/ManhattanWordDistance.cpp
| | A	src_galaxy_branch/libshogun/distance/ManhattanWordDistance.h
| | A	src_galaxy_branch/libshogun/distance/MinkowskiMetric.cpp
| | A	src_galaxy_branch/libshogun/distance/MinkowskiMetric.h
| | A	src_galaxy_branch/libshogun/distance/RealDistance.h
| | A	src_galaxy_branch/libshogun/distance/SimpleDistance.h
| | A	src_galaxy_branch/libshogun/distance/SparseDistance.h
| | A	src_galaxy_branch/libshogun/distance/SparseEuclidianDistance.cpp
| | A	src_galaxy_branch/libshogun/distance/SparseEuclidianDistance.h
| | A	src_galaxy_branch/libshogun/distance/StringDistance.h
| | A	src_galaxy_branch/libshogun/distance/TanimotoDistance.cpp
| | A	src_galaxy_branch/libshogun/distance/TanimotoDistance.h
| | A	src_galaxy_branch/libshogun/distributions/Distribution.cpp
| | A	src_galaxy_branch/libshogun/distributions/Distribution.h
| | A	src_galaxy_branch/libshogun/distributions/histogram/Histogram.cpp
| | A	src_galaxy_branch/libshogun/distributions/histogram/Histogram.h
| | A	src_galaxy_branch/libshogun/distributions/hmm/GHMM.cpp
| | A	src_galaxy_branch/libshogun/distributions/hmm/GHMM.h
| | A	src_galaxy_branch/libshogun/distributions/hmm/HMM.cpp
| | A	src_galaxy_branch/libshogun/distributions/hmm/HMM.h
| | A	src_galaxy_branch/libshogun/distributions/hmm/LinearHMM.cpp
| | A	src_galaxy_branch/libshogun/distributions/hmm/LinearHMM.h
| | A	src_galaxy_branch/libshogun/evaluation/PerformanceMeasures.cpp
| | A	src_galaxy_branch/libshogun/evaluation/PerformanceMeasures.h
| | A	src_galaxy_branch/libshogun/features/Alphabet.cpp
| | A	src_galaxy_branch/libshogun/features/Alphabet.h
| | A	src_galaxy_branch/libshogun/features/AttributeFeatures.cpp
| | A	src_galaxy_branch/libshogun/features/AttributeFeatures.h
| | A	src_galaxy_branch/libshogun/features/CombinedDotFeatures.cpp
| | A	src_galaxy_branch/libshogun/features/CombinedDotFeatures.h
| | A	src_galaxy_branch/libshogun/features/CombinedFeatures.cpp
| | A	src_galaxy_branch/libshogun/features/CombinedFeatures.h
| | A	src_galaxy_branch/libshogun/features/DotFeatures.cpp
| | A	src_galaxy_branch/libshogun/features/DotFeatures.h
| | A	src_galaxy_branch/libshogun/features/DummyFeatures.h
| | A	src_galaxy_branch/libshogun/features/ExplicitSpecFeatures.cpp
| | A	src_galaxy_branch/libshogun/features/ExplicitSpecFeatures.h
| | A	src_galaxy_branch/libshogun/features/FKFeatures.cpp
| | A	src_galaxy_branch/libshogun/features/FKFeatures.h
| | A	src_galaxy_branch/libshogun/features/Features.cpp
| | A	src_galaxy_branch/libshogun/features/Features.h
| | A	src_galaxy_branch/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| | A	src_galaxy_branch/libshogun/features/ImplicitWeightedSpecFeatures.h
| | A	src_galaxy_branch/libshogun/features/Labels.cpp
| | A	src_galaxy_branch/libshogun/features/Labels.h
| | A	src_galaxy_branch/libshogun/features/MindyGramFeatures.cpp
| | A	src_galaxy_branch/libshogun/features/MindyGramFeatures.h
| | A	src_galaxy_branch/libshogun/features/RealFileFeatures.cpp
| | A	src_galaxy_branch/libshogun/features/RealFileFeatures.h
| | A	src_galaxy_branch/libshogun/features/SimpleFeatures.h
| | A	src_galaxy_branch/libshogun/features/SparseFeatures.h
| | A	src_galaxy_branch/libshogun/features/StringFeatures.h
| | A	src_galaxy_branch/libshogun/features/TOPFeatures.cpp
| | A	src_galaxy_branch/libshogun/features/TOPFeatures.h
| | A	src_galaxy_branch/libshogun/features/WDFeatures.cpp
| | A	src_galaxy_branch/libshogun/features/WDFeatures.h
| | A	src_galaxy_branch/libshogun/features/__init__.py
| | A	src_galaxy_branch/libshogun/kernel/AUCKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/AUCKernel.h
| | A	src_galaxy_branch/libshogun/kernel/AvgDiagKernelNormalizer.h
| | A	src_galaxy_branch/libshogun/kernel/Chi2Kernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/Chi2Kernel.h
| | A	src_galaxy_branch/libshogun/kernel/CombinedKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/CombinedKernel.h
| | A	src_galaxy_branch/libshogun/kernel/CommUlongStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/CommUlongStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/CommWordStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/CommWordStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/ConstKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/ConstKernel.h
| | A	src_galaxy_branch/libshogun/kernel/CustomKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/CustomKernel.h
| | A	src_galaxy_branch/libshogun/kernel/DiagKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/DiagKernel.h
| | A	src_galaxy_branch/libshogun/kernel/DiceKernelNormalizer.h
| | A	src_galaxy_branch/libshogun/kernel/DistanceKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/DistanceKernel.h
| | A	src_galaxy_branch/libshogun/kernel/FirstElementKernelNormalizer.h
| | A	src_galaxy_branch/libshogun/kernel/FixedDegreeStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/FixedDegreeStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/GaussianKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/GaussianKernel.h
| | A	src_galaxy_branch/libshogun/kernel/GaussianShiftKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/GaussianShiftKernel.h
| | A	src_galaxy_branch/libshogun/kernel/GaussianShortRealKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/GaussianShortRealKernel.h
| | A	src_galaxy_branch/libshogun/kernel/HistogramWordStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/HistogramWordStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/IdentityKernelNormalizer.h
| | A	src_galaxy_branch/libshogun/kernel/Kernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/Kernel.h
| | A	src_galaxy_branch/libshogun/kernel/KernelMachine.cpp
| | A	src_galaxy_branch/libshogun/kernel/KernelMachine.h
| | A	src_galaxy_branch/libshogun/kernel/KernelNormalizer.h
| | A	src_galaxy_branch/libshogun/kernel/LinearByteKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/LinearByteKernel.h
| | A	src_galaxy_branch/libshogun/kernel/LinearKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/LinearKernel.h
| | A	src_galaxy_branch/libshogun/kernel/LinearStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/LinearStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/LinearWordKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/LinearWordKernel.h
| | A	src_galaxy_branch/libshogun/kernel/LocalAlignmentStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/LocalAlignmentStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/LocalityImprovedStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/LocalityImprovedStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/MatchWordStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/MatchWordStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/MindyGramKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/MindyGramKernel.h
| | A	src_galaxy_branch/libshogun/kernel/OligoStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/OligoStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/PolyKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/PolyKernel.h
| | A	src_galaxy_branch/libshogun/kernel/PolyMatchStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/PolyMatchStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/PolyMatchWordStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/PolyMatchWordStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/PyramidChi2.cpp
| | A	src_galaxy_branch/libshogun/kernel/PyramidChi2.h
| | A	src_galaxy_branch/libshogun/kernel/SalzbergWordStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/SalzbergWordStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/SigmoidKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/SigmoidKernel.h
| | A	src_galaxy_branch/libshogun/kernel/SimpleKernel.h
| | A	src_galaxy_branch/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/SparseGaussianKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/SparseGaussianKernel.h
| | A	src_galaxy_branch/libshogun/kernel/SparseKernel.h
| | A	src_galaxy_branch/libshogun/kernel/SparseLinearKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/SparseLinearKernel.h
| | A	src_galaxy_branch/libshogun/kernel/SparsePolyKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/SparsePolyKernel.h
| | A	src_galaxy_branch/libshogun/kernel/SqrtDiagKernelNormalizer.h
| | A	src_galaxy_branch/libshogun/kernel/StringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/TanimotoKernelNormalizer.h
| | A	src_galaxy_branch/libshogun/kernel/TensorProductPairKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/TensorProductPairKernel.h
| | A	src_galaxy_branch/libshogun/kernel/WeightedCommWordStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/WeightedCommWordStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/WeightedDegreePositionStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/WeightedDegreeStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/WeightedDegreeStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/__init__.py
| | A	src_galaxy_branch/libshogun/lib/Array.h
| | A	src_galaxy_branch/libshogun/lib/Array2.h
| | A	src_galaxy_branch/libshogun/lib/Array3.h
| | A	src_galaxy_branch/libshogun/lib/BitString.h
| | A	src_galaxy_branch/libshogun/lib/Cache.h
| | A	src_galaxy_branch/libshogun/lib/Cplex.cpp
| | A	src_galaxy_branch/libshogun/lib/Cplex.h
| | A	src_galaxy_branch/libshogun/lib/DynInt.h
| | A	src_galaxy_branch/libshogun/lib/DynamicArray.h
| | A	src_galaxy_branch/libshogun/lib/File.cpp
| | A	src_galaxy_branch/libshogun/lib/File.h
| | A	src_galaxy_branch/libshogun/lib/List.h
| | A	src_galaxy_branch/libshogun/lib/Mathematics.cpp
| | A	src_galaxy_branch/libshogun/lib/Mathematics.h
| | A	src_galaxy_branch/libshogun/lib/MemoryMappedFile.h
| | A	src_galaxy_branch/libshogun/lib/ShogunException.cpp
| | A	src_galaxy_branch/libshogun/lib/ShogunException.h
| | A	src_galaxy_branch/libshogun/lib/Signal.cpp
| | A	src_galaxy_branch/libshogun/lib/Signal.h
| | A	src_galaxy_branch/libshogun/lib/SimpleFile.h
| | A	src_galaxy_branch/libshogun/lib/Time.cpp
| | A	src_galaxy_branch/libshogun/lib/Time.h
| | A	src_galaxy_branch/libshogun/lib/Trie.cpp
| | A	src_galaxy_branch/libshogun/lib/Trie.h
| | A	src_galaxy_branch/libshogun/lib/__init__.py
| | A	src_galaxy_branch/libshogun/lib/common.h
| | A	src_galaxy_branch/libshogun/lib/io.cpp
| | A	src_galaxy_branch/libshogun/lib/io.h
| | A	src_galaxy_branch/libshogun/lib/lapack.cpp
| | A	src_galaxy_branch/libshogun/lib/lapack.h
| | A	src_galaxy_branch/libshogun/lib/memory.cpp
| | A	src_galaxy_branch/libshogun/lib/memory.h
| | A	src_galaxy_branch/libshogun/preproc/LogPlusOne.cpp
| | A	src_galaxy_branch/libshogun/preproc/LogPlusOne.h
| | A	src_galaxy_branch/libshogun/preproc/NormDerivativeLem3.cpp
| | A	src_galaxy_branch/libshogun/preproc/NormDerivativeLem3.h
| | A	src_galaxy_branch/libshogun/preproc/NormOne.cpp
| | A	src_galaxy_branch/libshogun/preproc/NormOne.h
| | A	src_galaxy_branch/libshogun/preproc/PCACut.cpp
| | A	src_galaxy_branch/libshogun/preproc/PCACut.h
| | A	src_galaxy_branch/libshogun/preproc/PreProc.cpp
| | A	src_galaxy_branch/libshogun/preproc/PreProc.h
| | A	src_galaxy_branch/libshogun/preproc/PruneVarSubMean.cpp
| | A	src_galaxy_branch/libshogun/preproc/PruneVarSubMean.h
| | A	src_galaxy_branch/libshogun/preproc/SimplePreProc.h
| | A	src_galaxy_branch/libshogun/preproc/SortUlongString.cpp
| | A	src_galaxy_branch/libshogun/preproc/SortUlongString.h
| | A	src_galaxy_branch/libshogun/preproc/SortWordString.cpp
| | A	src_galaxy_branch/libshogun/preproc/SortWordString.h
| | A	src_galaxy_branch/libshogun/preproc/SparsePreProc.h
| | A	src_galaxy_branch/libshogun/preproc/StringPreProc.h
| | A	src_galaxy_branch/libshogun/regression/KRR.cpp
| | A	src_galaxy_branch/libshogun/regression/KRR.h
| | A	src_galaxy_branch/libshogun/regression/Regression.h
| | A	src_galaxy_branch/libshogun/regression/svr/LibSVR.cpp
| | A	src_galaxy_branch/libshogun/regression/svr/LibSVR.h
| | A	src_galaxy_branch/libshogun/regression/svr/SVR_light.cpp
| | A	src_galaxy_branch/libshogun/regression/svr/SVR_light.h
| | A	src_galaxy_branch/libshogun/structure/DynProg.cpp
| | A	src_galaxy_branch/libshogun/structure/DynProg.h
| | A	src_galaxy_branch/libshogun/structure/Plif.cpp
| | A	src_galaxy_branch/libshogun/structure/Plif.h
| | A	src_galaxy_branch/libshogun/structure/PlifArray.cpp
| | A	src_galaxy_branch/libshogun/structure/PlifArray.h
| | A	src_galaxy_branch/libshogun/structure/PlifBase.h
| | A	src_galaxy_branch/libshogunui/GUIClassifier.cpp
| | A	src_galaxy_branch/libshogunui/GUIClassifier.h
| | A	src_galaxy_branch/libshogunui/GUICommands.h
| | A	src_galaxy_branch/libshogunui/GUIDistance.cpp
| | A	src_galaxy_branch/libshogunui/GUIDistance.h
| | A	src_galaxy_branch/libshogunui/GUIFeatures.cpp
| | A	src_galaxy_branch/libshogunui/GUIFeatures.h
| | A	src_galaxy_branch/libshogunui/GUIHMM.cpp
| | A	src_galaxy_branch/libshogunui/GUIHMM.h
| | A	src_galaxy_branch/libshogunui/GUIKernel.cpp
| | A	src_galaxy_branch/libshogunui/GUIKernel.h
| | A	src_galaxy_branch/libshogunui/GUILabels.cpp
| | A	src_galaxy_branch/libshogunui/GUILabels.h
| | A	src_galaxy_branch/libshogunui/GUIMath.cpp
| | A	src_galaxy_branch/libshogunui/GUIMath.h
| | A	src_galaxy_branch/libshogunui/GUIPluginEstimate.cpp
| | A	src_galaxy_branch/libshogunui/GUIPluginEstimate.h
| | A	src_galaxy_branch/libshogunui/GUIPreProc.cpp
| | A	src_galaxy_branch/libshogunui/GUIPreProc.h
| | A	src_galaxy_branch/libshogunui/GUIStructure.cpp
| | A	src_galaxy_branch/libshogunui/GUIStructure.h
| | A	src_galaxy_branch/libshogunui/GUITime.cpp
| | A	src_galaxy_branch/libshogunui/GUITime.h
| | A	src_galaxy_branch/libshogunui/SGInterface.cpp
| | A	src_galaxy_branch/libshogunui/SGInterface.h
| | A	src_galaxy_branch/libshogunui/SyntaxHighLight.h
| | A	src_galaxy_branch/matlab/MatlabInterface.cpp
| | A	src_galaxy_branch/matlab/MatlabInterface.h
| | A	src_galaxy_branch/modular/Classifier.doxy
| | A	src_galaxy_branch/modular/Classifier.i
| | A	src_galaxy_branch/modular/Clustering.doxy
| | A	src_galaxy_branch/modular/Clustering.i
| | A	src_galaxy_branch/modular/Distance.doxy
| | A	src_galaxy_branch/modular/Distance.i
| | A	src_galaxy_branch/modular/Distribution.doxy
| | A	src_galaxy_branch/modular/Distribution.i
| | A	src_galaxy_branch/modular/Evaluation.doxy
| | A	src_galaxy_branch/modular/Evaluation.i
| | A	src_galaxy_branch/modular/Features.doxy
| | A	src_galaxy_branch/modular/Features.i
| | A	src_galaxy_branch/modular/Kernel.doxy
| | A	src_galaxy_branch/modular/Kernel.i
| | A	src_galaxy_branch/modular/Library.doxy
| | A	src_galaxy_branch/modular/Library.i
| | A	src_galaxy_branch/modular/PreProc.doxy
| | A	src_galaxy_branch/modular/PreProc.i
| | A	src_galaxy_branch/modular/Regression.doxy
| | A	src_galaxy_branch/modular/Regression.i
| | A	src_galaxy_branch/modular/SGBase.i
| | A	src_galaxy_branch/modular/Structure.doxy
| | A	src_galaxy_branch/modular/Structure.i
| | A	src_galaxy_branch/octave/OctaveInterface.cpp
| | A	src_galaxy_branch/octave/OctaveInterface.h
| | A	src_galaxy_branch/octave_modular/sg_print_functions.cpp
| | A	src_galaxy_branch/octave_modular/swig_typemaps.i
| | A	src_galaxy_branch/python/PythonInterface.cpp
| | A	src_galaxy_branch/python/PythonInterface.h
| | A	src_galaxy_branch/python_modular/sg_print_functions.cpp
| | A	src_galaxy_branch/python_modular/swig_typemaps.i
| | A	src_galaxy_branch/r/RInterface.cpp
| | A	src_galaxy_branch/r/RInterface.h
| | A	src_galaxy_branch/r_modular/sg_print_functions.cpp
| | A	src_galaxy_branch/r_modular/swig_typemaps.i
| |   
* | commit fc6b557f1e4001aa8d05b935e5684d96cdd16324
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 14 05:18:03 2009 +0000
| | 
| |     add memorymapped file
| | 
| | M	src/modular/Library.i
| |   
* | commit 2eb2000c8f3cf24f71fbd3a2ef50ba3bbdad025a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 8 09:48:43 2009 +0000
| | 
| |     broken, but compiles at least
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKL.h
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| | M	src/libshogun/classifier/svm/MKLClassification.h
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| |   
* | commit e4f34aa7954445c41c6f58e3cc16338c67708914
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 8 07:28:07 2009 +0000
| | 
| |     further restructuring
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKL.h
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| | M	src/libshogun/classifier/svm/SVM.cpp
| | M	src/libshogun/classifier/svm/SVM.h
| |   
* | commit f72386f3d6c6717bf82190f3984f973c7e1e696b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 6 12:11:33 2009 +0000
| | 
| |     work in progress
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKL.h
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| | M	src/libshogun/classifier/svm/MKLClassification.h
| |   
* | commit 61b805b64badda1a27b1479af1a6b86b4320c290
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 6 09:07:44 2009 +0000
| | 
| |     suppress error on configure
| | 
| | M	src/configure
| |   
* | commit b13f6612cc469219bb2fdd4561dacf36ecb95fd2
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 5 20:39:12 2009 +0000
| | 
| |     back to broken
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | A	src/libshogun/classifier/svm/MKLClassification.cpp
| |   
* | commit 657f877bd39e034ca98fcec5468e7ba8eb8bd424
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 5 13:39:12 2009 +0000
| | 
| |     fix for one class nu svm, thanks to motoaki kawanabe
| | 
| | M	src/libshogunui/GUIClassifier.cpp
| |   
* | commit b327e82508ebb3ddd9065984fecc2938ce82ed3b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 5 13:22:34 2009 +0000
| | 
| |     get things back to compile
| | 
| | M	src/NEWS
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKL.h
| | M	src/libshogunui/GUIClassifier.cpp
| |   
* | commit 33a5fbc5104e0aca6e28517c55431d8e1f6b4f72
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 5 09:54:33 2009 +0000
| | 
| |     start cleaning up the MKL mess(tm), DON'T CURRENTLY USE
| | 
| | A	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKL.h
| | A	src/libshogun/classifier/svm/MKLClassification.h
| | A	src/libshogun/classifier/svm/MKLMulticlass.h
| | A	src/libshogun/classifier/svm/MKLRegression.cpp
| | A	src/libshogun/classifier/svm/MKLRegression.h
| | M	src/libshogun/classifier/svm/SVM.cpp
| | M	src/libshogun/classifier/svm/SVM.h
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/classifier/svm/SVM_light.h
| | M	src/libshogun/regression/svr/SVR_light.cpp
| | M	src/libshogun/regression/svr/SVR_light.h
| |   
* | commit ca835378fd064f34e4be44195ac6810b836cf231
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 5 07:40:00 2009 +0000
| | 
| |     start to work on generic MKL class
| | 
| | A	src/libshogun/classifier/svm/MKL.h
| |   
* | commit e1ac97081e1f86440e06fa17d1d4d3f5e9b7a1a2
| | Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| | Date:   Mon May 4 17:52:53 2009 +0000
| | 
| |     fixed a bug in MKL newton
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| |   
* | commit f520d7825698afff3c2b5708e813c213e7ddeab1
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Mon May 4 15:30:33 2009 +0000
|   
|       fix description
|   
|   M	src/libshogunui/SGInterface.cpp
|  
* commit 83c06d65702dec7ac6e92cc9f4763f666e85302e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 20:15:54 2009 +0000
| 
|     Preparing for new Release shogun_0.7.3
| 
| M	doc/Doxyfile
|  
* commit 453f1e2f41d77ed07e7f9fa7c80d22f428835257
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 20:07:08 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 9a301d4c82315110e715da4e16fa3c2c34cbed6d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 20:05:47 2009 +0000
| 
|     update NEWS
| 
| M	src/NEWS
|  
* commit 6e54b38e4e2e657b0b4cff0e672f269b922c76f3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 16:27:21 2009 +0000
| 
|     get some of the test to compile and actually run on OSX :)
| 
| M	examples/libshogun/Makefile
| M	src/Makefile.template
|  
* commit 823b73b3503712aef151bb2ed05cb741c6ae0ab8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 16:00:43 2009 +0000
| 
|     don't fail when gnu sed is in path on osx
| 
| M	src/configure
|  
* commit f7d53a74678af6d6169e418c7f59275041fa8a14
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 16:00:01 2009 +0000
| 
|     set include paths, libpaths to allow testing of libshogun examples in non standard dirs, add ldflags to allow custom
| 
| M	examples/libshogun/Makefile
| M	src/Makefile.template
| M	src/configure
|  
* commit 0df5f4663290691f2e9a0b920824250d38177f81
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 15:01:35 2009 +0000
| 
|     updated reference documentation
| 
| M	doc/Doxyfile
|  
* commit 922cf2f157084714b409156be6bcf5abc754c110
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 14:47:07 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 3305ebaa601f0f1e4fad858d2345903997f87901
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 14:46:05 2009 +0000
| 
|     AUC kernel test is broken too
| 
| D	testsuite/data/kernel/AUC_10_10_Gaussian_17.m
| M	testsuite/octave_modular/util/set_kernel.m
|  
* commit 967d3cb652d9ed59c3d9990ad2d6b4e5f2f4ca51
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 14:23:13 2009 +0000
| 
|     these tests are not correctly implemented - remove :(
| 
| D	testsuite/data/classifier/SVMOcas_0017_1en05_1_RAWDNA_1_False.m
| D	testsuite/data/classifier/SVMOcas_023_1en05_1_RAWDNA_1_False.m
| D	testsuite/data/classifier/SVMOcas_15_1en05_1_RAWDNA_1_False.m
| D	testsuite/data/classifier/SVMOcas_30_1en05_16_RAWDNA_1_False.m
| D	testsuite/data/classifier/SVMOcas_30_1en05_1_RAWDNA_1_False.m
|  
* commit 55a27ce7d4c5db1a6b614a28f4163ebec1cc0e68
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 14:15:10 2009 +0000
| 
|     update classifier tests
| 
| D	testsuite/data/classifier/GMNPSVM_0017_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GPBTSVM_0017_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GPBTSVM_0017_1en05_1_Linear.m
| D	testsuite/data/classifier/GPBTSVM_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GPBTSVM_023_1en05_1_Linear.m
| D	testsuite/data/classifier/GPBTSVM_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GPBTSVM_15_1en05_1_Linear.m
| D	testsuite/data/classifier/GPBTSVM_1en05_CommUlongString_0_3_DNA_0017_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_CommUlongString_0_3_DNA_023_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_CommUlongString_0_3_DNA_15_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_CommUlongString_0_3_DNA_30_16_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_CommUlongString_0_3_DNA_30_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_CommWordString_0_3_DNA_0017_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_CommWordString_0_3_DNA_023_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_CommWordString_0_3_DNA_15_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_CommWordString_0_3_DNA_30_16_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_CommWordString_0_3_DNA_30_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_0017_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_0017_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_023_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_023_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_15_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_15_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_30_16_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_30_16_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_30_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_30_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_0017_1_20_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_0017_1_20_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_023_1_20_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_023_1_20_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_15_1_20_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_15_1_20_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_30_16_20_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_30_16_20_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_30_1_20_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_30_1_20_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_0017_1_3_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_0017_1_3_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_023_1_3_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_023_1_3_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_15_1_3_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_15_1_3_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_30_16_3_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_30_16_3_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_30_1_3_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_30_1_3_60_True.m
| D	testsuite/data/classifier/GPBTSVM_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/GPBTSVM_30_1en05_16_Linear.m
| D	testsuite/data/classifier/GPBTSVM_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GPBTSVM_30_1en05_1_Linear.m
| D	testsuite/data/classifier/KNN_EuclidianDistance_3_1.m
| D	testsuite/data/classifier/LDA_01_1.m
| M	testsuite/data/classifier/LibLinear_0017_1en05_1_True.m
| M	testsuite/data/classifier/LibLinear_023_1en05_1_True.m
| M	testsuite/data/classifier/LibLinear_15_1en05_1_True.m
| M	testsuite/data/classifier/LibLinear_30_1en05_16_True.m
| M	testsuite/data/classifier/LibLinear_30_1en05_1_True.m
| D	testsuite/data/classifier/LibSVMMultiClass_0017_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_0017_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVM_0017_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVM_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVM_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVM_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/LibSVM_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/MPDSVM_0017_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/MPDSVM_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/MPDSVM_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/MPDSVM_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/MPDSVM_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/Perceptron_1_01_1000.m
| D	testsuite/data/classifier/SVMLight_0017_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/SVMLight_0017_1en05_1_Linear.m
| D	testsuite/data/classifier/SVMLight_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/SVMLight_023_1en05_1_Linear.m
| D	testsuite/data/classifier/SVMLight_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/SVMLight_15_1en05_1_Linear.m
| D	testsuite/data/classifier/SVMLight_1en05_CommUlongString_0_3_DNA_0017_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_CommUlongString_0_3_DNA_023_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_CommUlongString_0_3_DNA_15_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_CommUlongString_0_3_DNA_30_16_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_CommUlongString_0_3_DNA_30_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_CommWordString_0_3_DNA_0017_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_CommWordString_0_3_DNA_023_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_CommWordString_0_3_DNA_15_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_CommWordString_0_3_DNA_30_16_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_CommWordString_0_3_DNA_30_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_0017_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_0017_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_023_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_023_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_15_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_15_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_30_16_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_30_16_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_30_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_30_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_0017_1_20_60.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_0017_1_20_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_023_1_20_60.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_023_1_20_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_15_1_20_60.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_15_1_20_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_30_16_20_60.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_30_16_20_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_30_1_20_60.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_30_1_20_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_0017_1_3_60.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_0017_1_3_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_023_1_3_60.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_023_1_3_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_15_1_3_60.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_15_1_3_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_30_16_3_60.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_30_16_3_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_30_1_3_60.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_30_1_3_60_True.m
| D	testsuite/data/classifier/SVMLight_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/SVMLight_30_1en05_16_Linear.m
| D	testsuite/data/classifier/SVMLight_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/SVMLight_30_1en05_1_Linear.m
| M	testsuite/data/classifier/SVMLin_0017_1en05_1_True.m
| M	testsuite/data/classifier/SVMLin_023_1en05_1_True.m
| M	testsuite/data/classifier/SVMLin_15_1en05_1_True.m
| M	testsuite/data/classifier/SVMLin_30_1en05_16_True.m
| M	testsuite/data/classifier/SVMLin_30_1en05_1_True.m
| A	testsuite/data/classifier/SVMOcas_0017_1en05_1_RAWDNA_1_False.m
| A	testsuite/data/classifier/SVMOcas_023_1en05_1_RAWDNA_1_False.m
| A	testsuite/data/classifier/SVMOcas_15_1en05_1_RAWDNA_1_False.m
| M	testsuite/data/classifier/SVMOcas_30_1en05_16_05_False.m
| A	testsuite/data/classifier/SVMOcas_30_1en05_16_RAWDNA_1_False.m
| M	testsuite/data/classifier/SVMOcas_30_1en05_1_05_False.m
| A	testsuite/data/classifier/SVMOcas_30_1en05_1_RAWDNA_1_False.m
| M	testsuite/data/classifier/SVMSGD_0017_1en05_1_True.m
| M	testsuite/data/classifier/SVMSGD_023_1en05_1_True.m
| M	testsuite/data/classifier/SVMSGD_15_1en05_1_True.m
| M	testsuite/data/classifier/SVMSGD_30_1en05_16_True.m
| M	testsuite/data/classifier/SVMSGD_30_1en05_1_True.m
| M	testsuite/data/classifier/SubGradientSVM_0017_1en05_1_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_023_1en05_1_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_15_1en05_1_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_30_1en05_16_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_30_1en05_1_05_False.m
|  
* commit 3dc86352d4ce9934c6df2fb3989d0d1c96acdd23
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 14:14:11 2009 +0000
| 
|     add kernel tests
| 
| A	testsuite/data/kernel/AUC_10_10_Gaussian_17.m
| A	testsuite/data/kernel/Chi2_10_12.m
| A	testsuite/data/kernel/Combined_True_3_10_3_LocalAlignmentString_60_FixedDegreeString_10_60_PolyMatchString_DNA_10_DNA_DNA_60.m
| A	testsuite/data/kernel/CommUlongString_DNA_10_0_False_3_60_False.m
| A	testsuite/data/kernel/CommWordString_DNA_10_0_False_3_60_False.m
| A	testsuite/data/kernel/Const_230.m
| A	testsuite/data/kernel/Custom_7.m
| A	testsuite/data/kernel/Diag_10_230.m
| A	testsuite/data/kernel/Distance_10_CanberraMetric_17.m
| A	testsuite/data/kernel/FixedDegreeString_3_DNA_10_60.m
| A	testsuite/data/kernel/GaussianShift_10_1_13_2.m
| A	testsuite/data/kernel/Gaussian_10_13.m
| A	testsuite/data/kernel/HistogramWordString_DNA_0_3_60_False.m
| A	testsuite/data/kernel/LinearByte_RAWBYTE_60.m
| A	testsuite/data/kernel/LinearString_DNA_60.m
| A	testsuite/data/kernel/LinearWord_fnord.m
| A	testsuite/data/kernel/Linear_fnord.m
| A	testsuite/data/kernel/LocalAlignmentString_DNA_10_60.m
| A	testsuite/data/kernel/MatchWordString_3_DNA_10_0_3_60_False.m
| A	testsuite/data/kernel/OligoString_DNA_10_3_60_12.m
| A	testsuite/data/kernel/OligoString_DNA_10_4_60_17.m
| A	testsuite/data/kernel/PolyMatchString_3_DNA_10_60_False.m
| A	testsuite/data/kernel/PolyMatchString_3_DNA_10_60_True.m
| A	testsuite/data/kernel/PolyMatchWordString_3_DNA_10_0_3_60_False_False.m
| A	testsuite/data/kernel/PolyMatchWordString_3_DNA_10_0_3_60_True_False.m
| A	testsuite/data/kernel/Poly_1_0_10_3_6_01_False_False_CUBE_1_FK.m
| A	testsuite/data/kernel/Poly_1_0_10_3_6_01_False_False_CUBE_1_TOP.m
| A	testsuite/data/kernel/Poly_3_10_False.m
| A	testsuite/data/kernel/Poly_3_10_True.m
| A	testsuite/data/kernel/SalzbergWordString_DNA_0_3_60_False.m
| A	testsuite/data/kernel/Sigmoid_10_05_07.m
| A	testsuite/data/kernel/Sigmoid_10_11_13.m
| A	testsuite/data/kernel/SimpleLocalityImprovedString_DNA_10_5_60_5_7.m
| A	testsuite/data/kernel/SparseGaussian_10_17.m
| A	testsuite/data/kernel/SparseLinear_fnord.m
| A	testsuite/data/kernel/SparsePoly_3_10_False.m
| A	testsuite/data/kernel/SparsePoly_3_10_True.m
| A	testsuite/data/kernel/WeightedCommWordString_DNA_10_0_False_3_60_False.m
| A	testsuite/data/kernel/WeightedDegreePositionString_1_DNA_10_60.m
| A	testsuite/data/kernel/WeightedDegreePositionString_20_DNA_10_60.m
| A	testsuite/data/kernel/WeightedDegreeString_DNA_1_60.m
| A	testsuite/data/kernel/WeightedDegreeString_DNA_20_60.m
|  
* commit c944e153a2c1b3de233dd23b7504dde1a315596a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 14:13:32 2009 +0000
| 
|     remove kernels
| 
| D	testsuite/data/kernel/AUC_10_10_Gaussian_17.m
| D	testsuite/data/kernel/Chi2_10_12.m
| D	testsuite/data/kernel/Combined_True_3_10_3_LocalAlignmentString_60_FixedDegreeString_10_60_PolyMatchString_DNA_10_DNA_DNA_60.m
| D	testsuite/data/kernel/CommUlongString_DNA_10_0_False_3_60_False.m
| D	testsuite/data/kernel/CommWordString_DNA_10_0_False_3_60_False.m
| D	testsuite/data/kernel/Const_230.m
| D	testsuite/data/kernel/Custom_7.m
| D	testsuite/data/kernel/Diag_10_230.m
| D	testsuite/data/kernel/Distance_10_CanberraMetric_17.m
| D	testsuite/data/kernel/FixedDegreeString_3_DNA_10_60.m
| D	testsuite/data/kernel/GaussianShift_10_1_13_2.m
| D	testsuite/data/kernel/Gaussian_10_13.m
| D	testsuite/data/kernel/HistogramWordString_DNA_0_3_60_False.m
| D	testsuite/data/kernel/LinearByte_RAWBYTE_60.m
| D	testsuite/data/kernel/LinearString_DNA_60.m
| D	testsuite/data/kernel/LinearWord_fnord.m
| D	testsuite/data/kernel/Linear_fnord.m
| D	testsuite/data/kernel/LocalAlignmentString_DNA_10_60.m
| D	testsuite/data/kernel/MatchWordString_3_DNA_10_0_3_60_False.m
| D	testsuite/data/kernel/Oligo_DNA_10_3_60_12.m
| D	testsuite/data/kernel/Oligo_DNA_10_4_60_17.m
| D	testsuite/data/kernel/PolyMatchString_3_DNA_10_60_False.m
| D	testsuite/data/kernel/PolyMatchString_3_DNA_10_60_True.m
| D	testsuite/data/kernel/PolyMatchWordString_3_DNA_10_0_3_60_False_False.m
| D	testsuite/data/kernel/PolyMatchWordString_3_DNA_10_0_3_60_True_False.m
| D	testsuite/data/kernel/Poly_1_0_10_3_FK_6_01_False_False_CUBE_1.m
| D	testsuite/data/kernel/Poly_1_0_10_3_TOP_6_01_False_False_CUBE_1.m
| D	testsuite/data/kernel/Poly_3_10_False.m
| D	testsuite/data/kernel/Poly_3_10_True.m
| D	testsuite/data/kernel/SalzbergWordString_DNA_0_3_60_False.m
| D	testsuite/data/kernel/Sigmoid_10_05_07.m
| D	testsuite/data/kernel/Sigmoid_10_11_13.m
| D	testsuite/data/kernel/SimpleLocalityImprovedString_DNA_10_5_60_5_7.m
| D	testsuite/data/kernel/SparseGaussian_10_17.m
| D	testsuite/data/kernel/SparseLinear_fnord.m
| D	testsuite/data/kernel/SparsePoly_3_10_False.m
| D	testsuite/data/kernel/SparsePoly_3_10_True.m
| D	testsuite/data/kernel/WeightedCommWordString_DNA_10_0_False_3_60_False.m
| D	testsuite/data/kernel/WeightedDegreePositionString_1_DNA_10_60.m
| D	testsuite/data/kernel/WeightedDegreePositionString_20_DNA_10_60.m
| D	testsuite/data/kernel/WeightedDegreeString_DNA_1_60.m
| D	testsuite/data/kernel/WeightedDegreeString_DNA_20_60.m
| M	testsuite/generator/featop.py
|  
* commit 53366d03aff9812e004a6a619fbb5e9efecf40a7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 14:08:10 2009 +0000
| 
|     prefix make tests with LD_LIBRARY_PATH
| 
| M	src/Makefile
| M	src/Makefile.template
|  
* commit fb19ecc654fdcda1aa7d460f772d9732a2057e7b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 14:07:37 2009 +0000
| 
|     Oligo kernel is now named OligoString
| 
| M	testsuite/data/kernel/Oligo_DNA_10_3_60_12.m
| M	testsuite/generator/kernel.py
|  
* commit 672af99e14ebf87593085161ef9d747e4873cb41
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 14:06:35 2009 +0000
| 
|     update examples
| 
| M	examples/libshogun/Makefile
| M	examples/octave_modular/all_kernels.m
| M	examples/python/test_mkl.py
|  
* commit 8488f0a4f5335c16bd386a52b376b0631a704424
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 13:16:40 2009 +0000
| 
|     fix docu
| 
| M	src/libshogun/lib/GCArray.h
|  
* commit 585282cdb442712d0f2f69e81b74842a1f160153
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 13:07:51 2009 +0000
| 
|     workaround broke compilation here :(
| 
| M	src/libshogun/lib/Mathematics.h
|  
* commit 4c372d816e4561b62111a30582facf03e5fd0e06
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 13:01:00 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 18328cd40344cae42afe8fcd15020d3c545bd3ef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 12:59:46 2009 +0000
| 
|     new release tomorrow if things build under osx with this workaround
| 
| M	src/NEWS
|  
* commit d036bee06d3c4831ef760ee5d20569ed4abd2433
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 06:04:26 2009 +0000
| 
|     it seems that we get clashes with the standard template library...
| 
| M	src/libshogun/lib/Mathematics.h
|  
* commit 1c458057a970991e0ebb2a4bb7688fd5c703f7fa
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Fri May 1 11:55:00 2009 +0000
| 
|     Count the number of times beta is updated in MKL
| 
| M	src/libshogun/classifier/svm/SVM.h
| M	src/libshogun/classifier/svm/SVM_light.cpp
|  
* commit 600b6fcf3eb47abe7e0df88780c24ef44f6b6f6a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 29 08:48:38 2009 +0000
| 
|     throw away operator overloading and use get + set and add an example. things compile now again.
| 
| M	examples/libshogun/Makefile
| A	examples/libshogun/gc_array.cpp
| M	src/libshogun/lib/GCArray.h
| M	src/modular/Library.i
|  
* commit 5e54ef623d5d0e2f5d438477bb54a8991b48ca4b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 29 06:51:50 2009 +0000
| 
|     define is_infinity, is_nan, is_finite in CMath and make others use it, closer to compiling (GCArray still fails...)
| 
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/ssl.cpp
| M	src/libshogun/distributions/hmm/HMM.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/GCArray.h
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogunui/GUIStructure.cpp
|  
* commit fc2c072382b095594707a0c7dc46975d5e814021
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 28 15:03:24 2009 +0000
| 
|     put GCArray into .i file
| 
| M	src/modular/Library.i
|  
* commit 393d1b1654307141a31ad8040171b7134eeb4fa7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 28 14:58:27 2009 +0000
| 
|     remove erreaneously introduced plif functiosn
| 
| M	src/libshogun/structure/Plif.h
|  
* commit 91b563401e03589eb9774b60c9e394c729008756
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 28 14:55:41 2009 +0000
| 
|     - introduce garbage collecting array (GCArray)
|     - cleanup Plifs: never ever delete[] arrays in core functions. assume intial size (or size that is set using set_plif_length) is correct
| 
| A	src/libshogun/lib/GCArray.h
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/Plif.cpp
| M	src/libshogun/structure/Plif.h
| M	src/libshogunui/GUIStructure.cpp
|  
* commit 54bb150e987b83ae4bb89797f19148be24d9ea42
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 26 20:55:38 2009 +0000
| 
|     use isfinite everywhere as this is in the C99 standard
| 
| M	src/libshogun/lib/Mathematics.h
|  
* commit a10d126288be77186db8b3ead4285705684301ec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 26 16:47:53 2009 +0000
| 
|     fix warnings on build dependencies for python modular on mac
| 
| M	src/Makefile.template
|  
* commit 6702ae7f4efb8ba09c4971a5ba930d9db0afe728
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 26 12:05:06 2009 +0000
| 
|     build fixes for osx
| 
| M	src/configure
|  
* commit 79ff2c5fdd0aea92f695ed1b33c7557e606d493f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 26 09:17:10 2009 +0000
| 
|     python extensions always have an .so suffix on *nix and darwin as well
| 
| M	src/configure
|  
* commit 8622e0df846c5ca318377c08d929a00ae888fb0e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 23 06:09:33 2009 +0000
| 
|     use test data size when computing outputs in KNN
| 
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/distance/MinkowskiMetric.cpp
|  
* commit 64c7c2c3ac8fe2356ed7e65c4125ecbfb4750557
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Apr 21 19:58:06 2009 +0000
| 
|     minor modifications and some testcode.
| 
| M	src/libshogun/lib/BitString.h
| M	src/libshogun/lib/Mathematics.h
|  
* commit 477b403ad1ea3f3a388025b9fc030d12cb257a47
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Apr 21 19:06:33 2009 +0000
| 
| M	src/python_modular/swig_typemaps.i
|  
* commit 6c8de7779e0ded8c29d1ccd1f3a5e29516d7589f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 18 05:34:57 2009 +0000
| 
|     finally bitstring/indirect objects work together
| 
| M	examples/libshogun/indirect_object.cpp
| M	src/libshogun/lib/BitString.h
| M	src/libshogun/lib/IndirectObject.h
|  
* commit 912891a5cf4746cff18e45662b899a3d68bd1607
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 16 14:21:24 2009 +0000
| 
|     still debugging
| 
| M	src/libshogun/lib/BitString.h
|  
* commit 3335850b08ec3827967a79f897d332bfab871877
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 16 10:55:25 2009 +0000
| 
|     add example on how to access indirect objects
| 
| M	examples/libshogun/Makefile
| A	examples/libshogun/indirect_object.cpp
| M	src/libshogun/lib/BitString.h
|  
* commit bbc2c849b7ceff40a1ef5853986fd5dcc7fd57b7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 14 08:53:24 2009 +0000
| 
|     declare static variable in header file
| 
| D	src/libshogun/lib/IndirectObject.cpp
| M	src/libshogun/lib/IndirectObject.h
|  
* commit 1b4d95037e5cb58e84cb942d0af56967ee7a215c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 13 20:23:35 2009 +0000
| 
|     apply nd-array typemap
| 
| M	src/modular/Structure.i
|  
* commit 6b199a60d416821c77f71834aaecd499bc2e3d45
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 13 20:23:05 2009 +0000
| 
|     create an indirect object - allows for quicksort etc only modifying an index list
| 
| A	src/libshogun/lib/IndirectObject.cpp
| A	src/libshogun/lib/IndirectObject.h
|  
* commit ff5d27f0b451469c0a535cf1b046292faae1ae82
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 13 11:04:07 2009 +0000
| 
|     input typemap for N-dimensional python arrays
| 
| M	src/python_modular/swig_typemaps.i
|  
* commit ffc362850fc5933e7b49a299e31663431f81b19f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 13 09:38:13 2009 +0000
| 
|     fix syntax errors in script
| 
| M	src/configure
|  
* commit e87a6223d205bf09635a32354f0bffab64a3d05e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 12 21:03:04 2009 +0000
| 
|     potential install fixes for OSX
| 
| M	src/.r-install.sh
| M	src/Makefile
| M	src/Makefile.template
| M	src/configure
|  
* commit e494bc439df63a24be905bd40171a967aedb9ad6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 11 09:59:17 2009 +0000
| 
|     improve tutorial
| 
| M	doc/pages/DeveloperTutorial.mainpage
| M	examples/libshogun/Makefile
| A	examples/libshogun/rbf_kernel.cpp
| A	examples/libshogun/revlin_kernel.cpp
| M	src/NEWS
|  
* commit 80d5dda3368f17543d0b8e7f60d364a4b7023494
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 10 18:35:28 2009 +0000
| 
|     use -funroll-loops and CMath::{max,min,abs}
| 
| M	src/configure
| M	src/libshogun/classifier/svm/libocas.cpp
| M	src/libshogun/classifier/svm/libocas_common.h
| M	src/libshogun/classifier/svm/qpssvmlib.cpp
|  
* commit f69a19ff30c1f76d9a272b9c796dc3f6d75c166c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 10 05:29:31 2009 +0000
| 
|     move displaybits to lib/Mathematics, further work on bitstring
| 
| M	src/libshogun/lib/BitString.h
| M	src/libshogun/lib/DynInt.h
| M	src/libshogun/lib/Mathematics.h
|  
* commit 18d3135b2abc08852fdbedcb8484182c9d07a8b6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 8 18:58:52 2009 +0000
| 
|     compile fixes for darwin
| 
| M	src/configure
| M	src/libshogun/lib/lapack.cpp
|  
* commit c806d290df260384f532576d4ac295d78f77dd44
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 8 09:20:27 2009 +0000
| 
|     update NEWS
| 
| M	src/NEWS
|  
* commit eb2d4c7a9972775f00d2c8ed8d8a8127be7ebcbc
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Apr 8 06:34:27 2009 +0000
| 
|     more memleaks fixed
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit 3a1babea9e988e0188f8abe8f4b401b52ab07ab7
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Apr 8 06:03:24 2009 +0000
| 
|     fixed some memory leaks
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogunui/GUIStructure.cpp
| M	src/libshogunui/GUIStructure.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit e0dd34f02fdfe7d104e3dc2c1fc21fa298c619f0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 7 22:22:30 2009 +0000
| 
|     compile fixes for modular interfaces
| 
| M	src/libshogun/features/StringFeatures.h
|  
* commit a5a007b2c606354d2263734ca778d0fc62b46d11
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 5 18:28:03 2009 +0000
| 
|     don't set -undefined error on OSX as this conflicts with R and other builds
| 
| M	src/configure
|  
* commit ce0f6e9a78e4ee69841ce0afc93ff0340991711e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 5 18:25:41 2009 +0000
| 
|     add bitstring to efficiently represent huge strings
| 
| M	src/libshogun/features/StringFeatures.h
| A	src/libshogun/lib/BitString.h
|  
* commit f510d7211e7b0fe745c62bc144993a45060fe935
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 3 07:04:54 2009 +0000
| 
|     provide function to translate embedded bits back to string
| 
| M	src/libshogun/features/StringFeatures.h
|  
* commit c3e4a41214c6c8ca21924c03249ba7ee0be16815
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 2 22:33:08 2009 +0000
| 
|     speed up embedding
| 
| M	src/libshogun/features/StringFeatures.h
|  
* commit a40161ec48039e69b86e3bfbbeee9ffe14b9aeef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 2 20:52:13 2009 +0000
| 
|     add inplace remapping for fastq files
| 
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/StringFeatures.h
|  
* commit f9dec98675dc93a613984a300273b02cf56123ef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 2 16:38:03 2009 +0000
| 
|     fix bitshift ops
| 
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/DynInt.h
|  
* commit e129585066e818aa821b0d1442e3e4acf3758395
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 1 21:18:57 2009 +0000
| 
|     time outputs should use SG_PRINT
| 
| M	src/libshogun/lib/Time.cpp
|  
* commit 149b13ac7a24cebfb2d91a696e5c6e4fe52d47e4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 1 20:52:12 2009 +0000
| 
|     add an example on how to use dyn ints
| 
| M	examples/libshogun/Makefile
| A	examples/libshogun/dyn_int.cpp
|  
* commit 192441666e5cb87f6e9176eba4121da0f28ef0e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 1 18:18:58 2009 +0000
| 
|     add dynamic size integers and support for them in stringfeatures/alphabet
| 
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/StringFeatures.h
| A	src/libshogun/lib/DynInt.h
|  
* commit cec9178cab4354e607e3d8dd8c128b59aedb17f5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 1 09:45:39 2009 +0000
| 
|     fast fasta file reading
| 
| M	src/libshogun/features/StringFeatures.h
|  
* commit ff407ebca4096336d06dd5959798b573f7bebaf3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 1 08:12:30 2009 +0000
| 
|     fast reading of fastq files
| 
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/StringFeatures.h
| A	src/libshogun/lib/MemoryMappedFile.h
| M	src/libshogun/lib/SimpleFile.h
|  
* commit c98eea53d46241481ee68c0465029791fb21548f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 31 13:47:21 2009 +0000
| 
|     show detailed class description on top
| 
| M	doc/DoxygenLayout.xml
|  
* commit 08656a7272afe2abcb2a407dc0a72250ff3e88ec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 31 12:59:57 2009 +0000
| 
|     always use the central element as pivot element. it speeds up things when the array is already sorted.
| 
| M	src/NEWS
| M	src/libshogun/lib/Mathematics.h
|  
* commit d08347c5f39bf08f277f76734ae7dff31bd82396
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 30 23:02:06 2009 +0000
| 
|     - speed up qsort by factor of 2
|     - also provide convenience function for parallel qsort, to be called like CMath::parallel_qsort_index<uint64_t>(a, b, LEN, num_threads), gets quite some further speedup here
| 
| M	src/libshogun/lib/Mathematics.h
|  
* commit 13cd359e15cac38220148d10f8f678c7386e54fa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 27 16:49:37 2009 +0000
| 
|     - Make sure that all destructors are declared virtual.
|     - get_name function was undefined in Evaluation causing the PerformanceMeasures class to be defunct.
| 
| M	src/NEWS
| M	src/libshogun/base/Parallel.h
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/base/Version.h
| M	src/libshogun/classifier/svm/SVMSGD.h
| M	src/libshogun/classifier/svm/Tron.h
| M	src/libshogun/classifier/svm/gmnplib.h
| M	src/libshogun/classifier/svm/gnpplib.h
| M	src/libshogun/classifier/svm/qpbsvmlib.h
| M	src/libshogun/distributions/hmm/GHMM.h
| M	src/libshogun/distributions/hmm/LinearHMM.h
| M	src/libshogun/evaluation/PerformanceMeasures.cpp
| M	src/libshogun/evaluation/PerformanceMeasures.h
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/AttributeFeatures.h
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/MindyGramFeatures.h
| M	src/libshogun/kernel/OligoStringKernel.h
| M	src/libshogun/lib/Array.h
| M	src/libshogun/lib/Array2.h
| M	src/libshogun/lib/Array3.h
| M	src/libshogun/lib/Cache.h
| M	src/libshogun/lib/Cplex.h
| M	src/libshogun/lib/DynamicArray.h
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/List.h
| M	src/libshogun/lib/Signal.h
| M	src/libshogun/lib/SimpleFile.h
| M	src/libshogun/lib/Time.h
| M	src/libshogun/lib/Trie.h
| M	src/libshogun/structure/DynProg.h
| M	src/libshogun/structure/Plif.h
| M	src/modular/Evaluation.i
|  
* commit 851a98448b286e2932d2872778d3364b4865c03f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 23 09:00:05 2009 +0000
| 
|     call website update script on make update-webpage
| 
| M	Makefile
|  
* commit d5a48d328b4568955d290043ffaf913ca615df74
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 23 06:10:56 2009 +0000
| 
|     Preparing for new Release shogun_0.7.2
| 
| M	doc/Doxyfile
|  
* commit 0d14ef6511d382d15416aba40cc0ef4e6d3709b0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 23 06:07:20 2009 +0000
| 
|     updated reference documentation
| 
| M	doc/Doxyfile
| M	doc/pages/StaticRInterface.mainpage
|  
* commit 509b686cc57eed38c8609197775c1277a2fb5766
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 23 05:51:46 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
| M	src/NEWS
|  
* commit 79cfc70ef14dbc01e8b7dd140a9cb24e538fdd52
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 22 22:09:47 2009 +0000
| 
|     long double can be 96 or 128 bits so name it floatmax_t
| 
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/lib/common.h
| M	src/modular/Features.i
| M	src/python_modular/swig_typemaps.i
|  
* commit a5e291fd667035297ef4136e1743202f97fb35f9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 22 21:17:40 2009 +0000
| 
|     fix typo (, in url)
| 
| M	doc/pages/Installation.mainpage
|  
* commit 0f48328c1dcc6ea54931ee4dfc866e1c2d885177
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 22 20:20:12 2009 +0000
| 
|     fix norm printing
| 
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit ff3e6ea7d65f2dedcc239e29389c7d7c39f0dd9e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 22 17:01:09 2009 +0000
| 
|     - Support all data types from python_modular: dense, scipy-sparse
|     csc_sparse matrices and strings of type bool, char, (u)int{8,16,32,64},
|     float{32,64,96}. In addition, individual vectors/strings can now be
|     obtained and even changed.  See examples/python_modular/features_*.py
|     for examples.
|     - AUC maximization now works with arbitrary kernel SVMs.
|     - Documentation updates, many examples have been polished.
|     - Slightly speedup Oligo kernel.
|     - Fix reading strings from directory (f.load_from_directory()).
|     - Update copyright to 2009.
|     - Remove {Char,Short,Word,Int,Real}Features and only ever use the
|     templated SimpleFeatures.
|     - Split up examples in examples/python_modular to separate files.
|     - Now use s.set_features(strs) instead of s.set_string_features(strs)
|     to set string features.
|     - The meaning of the width parameter for the Oligo Kernel changed, the
|     OligoKernel has been renamed to OligoStringKernel.
| 
| M	doc/Doxyfile
| M	doc/DoxygenLayout.xml
| M	doc/pages/FAQ.mainpage
| M	doc/pages/Methods.mainpage
| M	examples/libshogun/minimal_svm.cpp
| M	examples/libshogun/rbf_svm.cpp
| M	examples/octave_modular/all_classifier.m
| M	examples/octave_modular/all_distance.m
| M	examples/octave_modular/all_distribution.m
| M	examples/octave_modular/all_kernels.m
| M	examples/octave_modular/all_preproc.m
| M	examples/python_modular/all_classifier.py
| D	examples/python_modular/all_clustering.py
| M	examples/python_modular/all_distance.py
| D	examples/python_modular/all_distribution.py
| D	examples/python_modular/all_kernels.py
| M	examples/python_modular/all_preproc.py
| M	examples/python_modular/check_commwordkernel_memleak.py
| A	examples/python_modular/clustering_hierarchical.py
| A	examples/python_modular/clustering_kmeans.py
| A	examples/python_modular/distribution_histogram.py
| A	examples/python_modular/distribution_hmm.py
| A	examples/python_modular/distribution_linear_hmm.py
| A	examples/python_modular/features_simple.py
| A	examples/python_modular/features_simple_byte.py
| A	examples/python_modular/features_simple_longint.py
| A	examples/python_modular/features_simple_real.py
| A	examples/python_modular/features_sparse.py
| A	examples/python_modular/features_string_char.py
| A	examples/python_modular/features_string_file.py
| A	examples/python_modular/features_string_sliding_window.py
| A	examples/python_modular/features_string_ulong.py
| A	examples/python_modular/features_string_word.py
| A	examples/python_modular/kernel_auc.py
| A	examples/python_modular/kernel_chi2.py
| A	examples/python_modular/kernel_combined.py
| A	examples/python_modular/kernel_comm_ulong_string.py
| A	examples/python_modular/kernel_comm_word_string.py
| A	examples/python_modular/kernel_const.py
| A	examples/python_modular/kernel_custom.py
| A	examples/python_modular/kernel_diag.py
| A	examples/python_modular/kernel_distance.py
| A	examples/python_modular/kernel_fisher.py
| A	examples/python_modular/kernel_fixed_degree_string.py
| A	examples/python_modular/kernel_gaussian.py
| A	examples/python_modular/kernel_gaussian_shift.py
| A	examples/python_modular/kernel_histogram_word_string.py
| A	examples/python_modular/kernel_linear.py
| A	examples/python_modular/kernel_linear_byte.py
| A	examples/python_modular/kernel_linear_string.py
| A	examples/python_modular/kernel_linear_word.py
| A	examples/python_modular/kernel_local_alignment_string.py
| A	examples/python_modular/kernel_locality_improved_string.py
| A	examples/python_modular/kernel_match_word_string.py
| A	examples/python_modular/kernel_oligo_string.py
| A	examples/python_modular/kernel_poly.py
| A	examples/python_modular/kernel_poly_match_string.py
| A	examples/python_modular/kernel_poly_match_word_string.py
| A	examples/python_modular/kernel_salzberg_word_string.py
| A	examples/python_modular/kernel_sigmoid.py
| A	examples/python_modular/kernel_simple_locality_improved_string.py
| A	examples/python_modular/kernel_sparse_gaussian.py
| A	examples/python_modular/kernel_sparse_linear.py
| A	examples/python_modular/kernel_sparse_poly.py
| A	examples/python_modular/kernel_top.py
| A	examples/python_modular/kernel_weighted_comm_word_string.py
| A	examples/python_modular/kernel_weighted_degree_position_string.py
| A	examples/python_modular/kernel_weighted_degree_string.py
| D	examples/python_modular/stringfeatures.py
| M	src/.authors
| M	src/.r-install.sh
| M	src/AUTHORS
| M	src/NEWS
| M	src/libshogun/base/Parallel.h
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/base/Version.h
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/classifier/KNN.h
| M	src/libshogun/classifier/KernelPerceptron.cpp
| M	src/libshogun/classifier/KernelPerceptron.h
| M	src/libshogun/classifier/LDA.cpp
| M	src/libshogun/classifier/LDA.h
| M	src/libshogun/classifier/LPBoost.cpp
| M	src/libshogun/classifier/LPBoost.h
| M	src/libshogun/classifier/LPM.cpp
| M	src/libshogun/classifier/LPM.h
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/Perceptron.cpp
| M	src/libshogun/classifier/Perceptron.h
| M	src/libshogun/classifier/PluginEstimate.h
| M	src/libshogun/classifier/SubGradientLPM.cpp
| M	src/libshogun/classifier/SubGradientLPM.h
| M	src/libshogun/classifier/svm/CPLEXSVM.cpp
| M	src/libshogun/classifier/svm/CPLEXSVM.h
| M	src/libshogun/classifier/svm/GMNPSVM.h
| M	src/libshogun/classifier/svm/GNPPSVM.h
| M	src/libshogun/classifier/svm/GPBTSVM.cpp
| M	src/libshogun/classifier/svm/GPBTSVM.h
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/LibSVM.cpp
| M	src/libshogun/classifier/svm/LibSVM.h
| M	src/libshogun/classifier/svm/LibSVMMultiClass.cpp
| M	src/libshogun/classifier/svm/LibSVMMultiClass.h
| M	src/libshogun/classifier/svm/LibSVMOneClass.cpp
| M	src/libshogun/classifier/svm/LibSVMOneClass.h
| M	src/libshogun/classifier/svm/MPDSVM.cpp
| M	src/libshogun/classifier/svm/MPDSVM.h
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.h
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVM.h
| M	src/libshogun/classifier/svm/SVMLin.cpp
| M	src/libshogun/classifier/svm/SVMLin.h
| M	src/libshogun/classifier/svm/SVMOcas.cpp
| M	src/libshogun/classifier/svm/SVMOcas.h
| M	src/libshogun/classifier/svm/SVMSGD.h
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.h
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/SVM_light.h
| M	src/libshogun/classifier/svm/SVM_linear.cpp
| M	src/libshogun/classifier/svm/SVM_linear.h
| M	src/libshogun/classifier/svm/SubGradientSVM.cpp
| M	src/libshogun/classifier/svm/SubGradientSVM.h
| M	src/libshogun/classifier/svm/Tron.h
| M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| M	src/libshogun/classifier/svm/WDSVMOcas.h
| M	src/libshogun/classifier/svm/gmnplib.h
| M	src/libshogun/classifier/svm/gmnpmkl.h
| M	src/libshogun/classifier/svm/gnpplib.h
| M	src/libshogun/classifier/svm/gpdt.cpp
| M	src/libshogun/classifier/svm/gpdt.h
| M	src/libshogun/classifier/svm/gpdtsolve.cpp
| M	src/libshogun/classifier/svm/gpdtsolve.h
| M	src/libshogun/classifier/svm/libocas.cpp
| M	src/libshogun/classifier/svm/libocas.h
| M	src/libshogun/classifier/svm/pr_loqo.cpp
| M	src/libshogun/classifier/svm/pr_loqo.h
| M	src/libshogun/classifier/svm/qpbsvmlib.cpp
| M	src/libshogun/classifier/svm/qpbsvmlib.h
| M	src/libshogun/classifier/svm/ssl.h
| M	src/libshogun/clustering/Hierarchical.cpp
| M	src/libshogun/clustering/Hierarchical.h
| M	src/libshogun/clustering/KMeans.cpp
| M	src/libshogun/clustering/KMeans.h
| M	src/libshogun/distance/BrayCurtisDistance.cpp
| M	src/libshogun/distance/BrayCurtisDistance.h
| M	src/libshogun/distance/CanberraMetric.cpp
| M	src/libshogun/distance/CanberraMetric.h
| M	src/libshogun/distance/CanberraWordDistance.cpp
| M	src/libshogun/distance/CanberraWordDistance.h
| M	src/libshogun/distance/ChebyshewMetric.cpp
| M	src/libshogun/distance/ChebyshewMetric.h
| M	src/libshogun/distance/ChiSquareDistance.cpp
| M	src/libshogun/distance/ChiSquareDistance.h
| M	src/libshogun/distance/CosineDistance.cpp
| M	src/libshogun/distance/CosineDistance.h
| M	src/libshogun/distance/Distance.cpp
| M	src/libshogun/distance/Distance.h
| M	src/libshogun/distance/DistanceMachine.cpp
| M	src/libshogun/distance/DistanceMachine.h
| M	src/libshogun/distance/EuclidianDistance.cpp
| M	src/libshogun/distance/EuclidianDistance.h
| M	src/libshogun/distance/GeodesicMetric.cpp
| M	src/libshogun/distance/GeodesicMetric.h
| M	src/libshogun/distance/HammingWordDistance.cpp
| M	src/libshogun/distance/HammingWordDistance.h
| M	src/libshogun/distance/JensenMetric.cpp
| M	src/libshogun/distance/JensenMetric.h
| M	src/libshogun/distance/ManhattanMetric.cpp
| M	src/libshogun/distance/ManhattanMetric.h
| M	src/libshogun/distance/ManhattanWordDistance.cpp
| M	src/libshogun/distance/ManhattanWordDistance.h
| M	src/libshogun/distance/MinkowskiMetric.cpp
| M	src/libshogun/distance/MinkowskiMetric.h
| M	src/libshogun/distance/RealDistance.h
| M	src/libshogun/distance/SimpleDistance.h
| M	src/libshogun/distance/SparseDistance.h
| M	src/libshogun/distance/SparseEuclidianDistance.cpp
| M	src/libshogun/distance/SparseEuclidianDistance.h
| M	src/libshogun/distance/StringDistance.h
| M	src/libshogun/distance/TanimotoDistance.cpp
| M	src/libshogun/distance/TanimotoDistance.h
| M	src/libshogun/distributions/Distribution.cpp
| M	src/libshogun/distributions/Distribution.h
| M	src/libshogun/distributions/histogram/Histogram.cpp
| M	src/libshogun/distributions/histogram/Histogram.h
| M	src/libshogun/distributions/hmm/GHMM.cpp
| M	src/libshogun/distributions/hmm/GHMM.h
| M	src/libshogun/distributions/hmm/HMM.cpp
| M	src/libshogun/distributions/hmm/HMM.h
| M	src/libshogun/distributions/hmm/LinearHMM.cpp
| M	src/libshogun/distributions/hmm/LinearHMM.h
| M	src/libshogun/evaluation/PerformanceMeasures.cpp
| M	src/libshogun/evaluation/PerformanceMeasures.h
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/AttributeFeatures.h
| D	src/libshogun/features/ByteFeatures.cpp
| D	src/libshogun/features/ByteFeatures.h
| D	src/libshogun/features/CharFeatures.cpp
| D	src/libshogun/features/CharFeatures.h
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/CombinedFeatures.cpp
| M	src/libshogun/features/CombinedFeatures.h
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/DummyFeatures.h
| M	src/libshogun/features/ExplicitSpecFeatures.h
| M	src/libshogun/features/FKFeatures.cpp
| M	src/libshogun/features/FKFeatures.h
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| D	src/libshogun/features/IntFeatures.cpp
| D	src/libshogun/features/IntFeatures.h
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/MindyGramFeatures.cpp
| M	src/libshogun/features/MindyGramFeatures.h
| D	src/libshogun/features/RealFeatures.cpp
| D	src/libshogun/features/RealFeatures.h
| M	src/libshogun/features/RealFileFeatures.cpp
| M	src/libshogun/features/RealFileFeatures.h
| D	src/libshogun/features/ShortFeatures.cpp
| D	src/libshogun/features/ShortFeatures.h
| D	src/libshogun/features/ShortRealFeatures.cpp
| D	src/libshogun/features/ShortRealFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| D	src/libshogun/features/StringFeatures.cpp
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/TOPFeatures.cpp
| M	src/libshogun/features/TOPFeatures.h
| M	src/libshogun/features/WDFeatures.h
| D	src/libshogun/features/WordFeatures.cpp
| D	src/libshogun/features/WordFeatures.h
| M	src/libshogun/kernel/AUCKernel.cpp
| M	src/libshogun/kernel/AUCKernel.h
| M	src/libshogun/kernel/AvgDiagKernelNormalizer.h
| M	src/libshogun/kernel/Chi2Kernel.cpp
| M	src/libshogun/kernel/Chi2Kernel.h
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/kernel/CommUlongStringKernel.cpp
| M	src/libshogun/kernel/CommUlongStringKernel.h
| M	src/libshogun/kernel/CommWordStringKernel.cpp
| M	src/libshogun/kernel/CommWordStringKernel.h
| M	src/libshogun/kernel/ConstKernel.cpp
| M	src/libshogun/kernel/ConstKernel.h
| M	src/libshogun/kernel/CustomKernel.cpp
| M	src/libshogun/kernel/CustomKernel.h
| M	src/libshogun/kernel/DiagKernel.cpp
| M	src/libshogun/kernel/DiagKernel.h
| M	src/libshogun/kernel/DiceKernelNormalizer.h
| M	src/libshogun/kernel/DistanceKernel.cpp
| M	src/libshogun/kernel/DistanceKernel.h
| M	src/libshogun/kernel/FirstElementKernelNormalizer.h
| M	src/libshogun/kernel/FixedDegreeStringKernel.cpp
| M	src/libshogun/kernel/FixedDegreeStringKernel.h
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/GaussianShiftKernel.cpp
| M	src/libshogun/kernel/GaussianShiftKernel.h
| M	src/libshogun/kernel/GaussianShortRealKernel.cpp
| M	src/libshogun/kernel/GaussianShortRealKernel.h
| M	src/libshogun/kernel/HistogramWordStringKernel.cpp
| M	src/libshogun/kernel/HistogramWordStringKernel.h
| M	src/libshogun/kernel/IdentityKernelNormalizer.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/KernelMachine.cpp
| M	src/libshogun/kernel/KernelMachine.h
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/kernel/LinearByteKernel.cpp
| M	src/libshogun/kernel/LinearByteKernel.h
| M	src/libshogun/kernel/LinearKernel.cpp
| M	src/libshogun/kernel/LinearKernel.h
| M	src/libshogun/kernel/LinearStringKernel.cpp
| M	src/libshogun/kernel/LinearStringKernel.h
| M	src/libshogun/kernel/LinearWordKernel.cpp
| M	src/libshogun/kernel/LinearWordKernel.h
| M	src/libshogun/kernel/LocalAlignmentStringKernel.h
| M	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/LocalityImprovedStringKernel.h
| M	src/libshogun/kernel/MatchWordStringKernel.cpp
| M	src/libshogun/kernel/MatchWordStringKernel.h
| M	src/libshogun/kernel/MindyGramKernel.cpp
| M	src/libshogun/kernel/MindyGramKernel.h
| D	src/libshogun/kernel/OligoKernel.cpp
| D	src/libshogun/kernel/OligoKernel.h
| A	src/libshogun/kernel/OligoStringKernel.cpp
| A	src/libshogun/kernel/OligoStringKernel.h
| M	src/libshogun/kernel/PolyKernel.cpp
| M	src/libshogun/kernel/PolyKernel.h
| M	src/libshogun/kernel/PolyMatchStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchStringKernel.h
| M	src/libshogun/kernel/PolyMatchWordStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchWordStringKernel.h
| M	src/libshogun/kernel/PyramidChi2.cpp
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogun/kernel/SalzbergWordStringKernel.cpp
| M	src/libshogun/kernel/SalzbergWordStringKernel.h
| M	src/libshogun/kernel/SigmoidKernel.cpp
| M	src/libshogun/kernel/SigmoidKernel.h
| M	src/libshogun/kernel/SimpleKernel.h
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/libshogun/kernel/SparseGaussianKernel.cpp
| M	src/libshogun/kernel/SparseGaussianKernel.h
| M	src/libshogun/kernel/SparseKernel.h
| M	src/libshogun/kernel/SparseLinearKernel.cpp
| M	src/libshogun/kernel/SparseLinearKernel.h
| M	src/libshogun/kernel/SparsePolyKernel.cpp
| M	src/libshogun/kernel/SparsePolyKernel.h
| M	src/libshogun/kernel/SqrtDiagKernelNormalizer.h
| M	src/libshogun/kernel/StringKernel.h
| M	src/libshogun/kernel/TanimotoKernelNormalizer.h
| M	src/libshogun/kernel/TensorProductPairKernel.cpp
| M	src/libshogun/kernel/TensorProductPairKernel.h
| M	src/libshogun/kernel/WeightedCommWordStringKernel.cpp
| M	src/libshogun/kernel/WeightedCommWordStringKernel.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
| M	src/libshogun/lib/Array.h
| M	src/libshogun/lib/Array2.h
| M	src/libshogun/lib/Array3.h
| M	src/libshogun/lib/Cache.h
| M	src/libshogun/lib/Cplex.h
| M	src/libshogun/lib/DynamicArray.h
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/List.h
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/lib/ShogunException.h
| M	src/libshogun/lib/Signal.h
| M	src/libshogun/lib/SimpleFile.h
| M	src/libshogun/lib/Time.h
| M	src/libshogun/lib/Trie.h
| M	src/libshogun/lib/common.h
| M	src/libshogun/lib/io.cpp
| M	src/libshogun/lib/io.h
| M	src/libshogun/lib/lapack.h
| M	src/libshogun/preproc/LogPlusOne.cpp
| M	src/libshogun/preproc/LogPlusOne.h
| M	src/libshogun/preproc/NormDerivativeLem3.cpp
| M	src/libshogun/preproc/NormDerivativeLem3.h
| M	src/libshogun/preproc/NormOne.cpp
| M	src/libshogun/preproc/NormOne.h
| M	src/libshogun/preproc/PCACut.cpp
| M	src/libshogun/preproc/PCACut.h
| M	src/libshogun/preproc/PreProc.cpp
| M	src/libshogun/preproc/PreProc.h
| M	src/libshogun/preproc/PruneVarSubMean.cpp
| M	src/libshogun/preproc/PruneVarSubMean.h
| M	src/libshogun/preproc/SimplePreProc.h
| M	src/libshogun/preproc/SortUlongString.cpp
| M	src/libshogun/preproc/SortUlongString.h
| M	src/libshogun/preproc/SortWordString.cpp
| M	src/libshogun/preproc/SortWordString.h
| M	src/libshogun/preproc/SparsePreProc.h
| M	src/libshogun/preproc/StringPreProc.h
| M	src/libshogun/regression/KRR.cpp
| M	src/libshogun/regression/KRR.h
| M	src/libshogun/regression/Regression.h
| M	src/libshogun/regression/svr/LibSVR.cpp
| M	src/libshogun/regression/svr/LibSVR.h
| M	src/libshogun/regression/svr/SVR_light.cpp
| M	src/libshogun/regression/svr/SVR_light.h
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogun/structure/Plif.cpp
| M	src/libshogun/structure/Plif.h
| M	src/libshogun/structure/PlifArray.cpp
| M	src/libshogun/structure/PlifArray.h
| M	src/libshogun/structure/PlifBase.h
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIDistance.cpp
| M	src/libshogunui/GUIFeatures.cpp
| M	src/libshogunui/GUIFeatures.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/GUIPreProc.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/Features.i
| M	src/modular/Kernel.i
| M	src/octave_modular/swig_typemaps.i
| M	src/python_modular/swig_typemaps.i
| M	testsuite/octave_modular/util/set_features.m
| M	testsuite/octave_modular/util/set_pos_and_neg.m
| M	testsuite/python_modular/util.py
|  
* commit 467fdfff220a00bc146d2bbbec408c844132d3c7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 11 08:41:53 2009 +0000
| 
|     equivalant logic transformation
| 
| M	src/libshogun/features/Labels.cpp
|  
* commit 65fce6905f08470ab2873fb2dae7ff5169eb1660
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 10 10:03:25 2009 +0000
| 
|     compile fixes / make installation path relative
| 
| A	src/.relpath.py
| M	src/Makefile.template
| M	src/modular/Classifier.i
|  
* commit 52b71976c44e3ff69991f3ca2cafb63d06d318e7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 8 19:12:57 2009 +0000
| 
|     Preparing for new Release shogun_0.7.1
| 
| M	doc/Doxyfile
|  
* commit 62fc2fe3fb2b331f85a3ceeb541afa26a0c1ba3c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 8 19:12:41 2009 +0000
| 
|     updated reference documentation
| 
| M	doc/Doxyfile
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
|  
* commit 1ae680de5b0fab3b4ab82cc762c137907d8362d9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 8 19:00:10 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 5ae0c11edaf0f7bdac6f3b5474c45194bcd5c817
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 8 18:47:16 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit ebb19a547bb587f9bac9b7bc513ddd44c28069e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 8 18:45:15 2009 +0000
| 
|     update documentation
| 
| M	doc/Doxyfile
| A	doc/DoxygenLayout.xml
| M	doc/pages/DeveloperTutorial.mainpage
| A	doc/pages/EierlegendeWollmilchSauInterface.mainpage
| M	doc/pages/Interfaces.mainpage
| M	doc/pages/StaticInterfaces.mainpage
| M	doc/pages/Tutorial.mainpage
| A	examples/elwms/octave_matplotlib.m
| M	src/NEWS
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/KNN.h
| M	src/libshogun/classifier/KernelPerceptron.h
| M	src/libshogun/classifier/LDA.h
| M	src/libshogun/classifier/LPBoost.h
| M	src/libshogun/classifier/LPM.h
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/Perceptron.h
| M	src/libshogun/classifier/PluginEstimate.cpp
| M	src/libshogun/classifier/PluginEstimate.h
| M	src/libshogun/classifier/SubGradientLPM.h
| M	src/libshogun/classifier/svm/GMNPSVM.h
| M	src/libshogun/classifier/svm/gmnplib.h
| M	src/libshogun/classifier/svm/gmnpmkl.h
| M	src/libshogun/classifier/svm/gnpplib.h
| M	src/libshogun/distance/DistanceMachine.h
| M	src/libshogun/features/AttributeFeatures.h
| M	src/libshogun/kernel/KernelMachine.h
| M	src/libshogun/lib/Cplex.h
|  
* commit 53947f3dddd0dd8f007656615c3437094983e565
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 5 21:40:08 2009 +0000
| 
|     whitespace code cleanup + docu
| 
| M	src/configure
| M	src/libshogun/base/SGObject.h
|  
* commit 97d9afc2492bd303016338089b612269389b8915
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 5 21:02:03 2009 +0000
| 
|     add chris to authors and get python,... to R interface to work
| 
| A	examples/elwms/foo.R
| A	examples/elwms/octave_to_r.m
| M	src/.authors
| M	src/configure
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/matlab/MatlabInterface.cpp
| M	src/matlab/MatlabInterface.h
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| M	src/python/PythonInterface.cpp
| M	src/python/PythonInterface.h
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
|  
* commit cc678928c1c3925fd69aaf6ded009f1abe51235d
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Mar 5 17:26:51 2009 +0000
| 
|     first piece of serialization support ported to a non-ancient version of shogun, default=off
| 
| M	src/configure
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/classifier/svm/SVM_libsvm.h
| M	src/r/RInterface.h
|  
* commit aa3a46dd68b2f0ead9b21d3ddea2ff34a4b159f9
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Mar 5 17:01:10 2009 +0000
| 
|     checks for boost_serialization
| 
| M	src/configure
|  
* commit f49a3834033e01e0e4ecfeaf08b5845bca742df1
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Mar 5 15:56:02 2009 +0000
| 
| M	README
|  
* commit cf31247aa842ac05023d99531bb6a67c97d7b58e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 4 19:59:49 2009 +0000
| 
|     run octave embedded quietly
| 
| M	src/matlab/MatlabInterface.cpp
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| M	src/python/PythonInterface.cpp
| M	src/r/RInterface.cpp
|  
* commit 75ea280a62e119f446a4af718d79f747b2c028c0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 4 19:53:28 2009 +0000
| 
|     make the example more fancy: plot a figure in python - matplotlib from within octave :-)
| 
| M	examples/elwms/octave_to_python.m
| M	examples/elwms/python_to_octave.py
|  
* commit 4510b184e5b3b3a9a630fa4f6eebff7044abd6ec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 4 07:03:00 2009 +0000
| 
|     x to octave now fully working for x in r,python and I guess even matlab
| 
| M	examples/elwms/python_to_octave.py
| A	examples/elwms/r_to_octave.m
| M	src/octave/OctaveInterface.cpp
|  
* commit 59e18de589f00d7cb3d24b8fcf05f4f43c0c90f9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 4 06:19:30 2009 +0000
| 
|     make example comput. easier
| 
| M	examples/python_modular/custom_kernel.py
|  
* commit 0ec7a1412f2eba14b3c559bf7950e5a4fb2d60a6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 4 06:10:40 2009 +0000
| 
|     fix orientation of strings
| 
| M	examples/octave_modular/tools/load_matrix.m
|  
* commit 652f82a2379b2e26aa7213f96b7e5bbeb9f63e62
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 3 23:28:46 2009 +0000
| 
|     load strings as one string per line
| 
| M	examples/cmdline/all_classifier.sg
| M	examples/cmdline/all_kernels.sg
| M	examples/matlab_and_octave/tools/load_matrix.m
| M	examples/python/tools/load.py
| M	examples/r/all_kernels.R
| M	testsuite/test_configure.py
|  
* commit 923d7475bd2055c247cb485fb816344d964fb160
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 3 22:28:54 2009 +0000
| 
|     fix wrong data set sizes
| 
| M	examples/data/fm_test_dna.dat
| M	examples/data/fm_train_dna.dat
| M	examples/data/label_train_dna.dat
|  
* commit 4ce7bf377558b04850cdab9366ad4cbe64e44b27
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 3 22:28:27 2009 +0000
| 
|     fix reading char matrices
| 
| M	examples/python_modular/tools/load.py
|  
* commit 99c0d4c6242e1226d3f37e9f74c068fd8f5aab95
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 3 22:28:12 2009 +0000
| 
|     -fvirtual seems to break things
| 
| M	src/configure
| M	src/libshogun/features/RealFeatures.h
|  
* commit 46cd927805bf6c176df772ed938c5c60c2af4db2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 3 21:41:02 2009 +0000
| 
|     add function to get sub kernel weights and fix clash in exceptions by introducing a virtual functions as suggested in http://sourceforge.net/mailarchive/message.php?msg_name=48DF377F.2050407%40salilab.org
| 
| M	src/configure
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/lib/ShogunException.cpp
| M	src/libshogun/lib/ShogunException.h
| M	src/modular/Kernel.i
|  
* commit 5148e2a8c85ad4247a1444e654b352b66d8f15a2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 3 06:53:06 2009 +0000
| 
|     python,... to octave
| 
| M	examples/elwms/octave_to_python.m
| A	examples/elwms/python_to_octave.py
| M	examples/elwms/r_to_python.R
| M	src/Makefile.template
| M	src/configure
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/matlab/MatlabInterface.cpp
| M	src/matlab/MatlabInterface.h
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| M	src/python/PythonInterface.cpp
| M	src/python/PythonInterface.h
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
|  
* commit 67ad179065d41e254444f5176aa41a9b0d36ade4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 2 09:23:26 2009 +0000
| 
|     implement dummy attribute struct hooks, fix examples
| 
| M	examples/python/test_mkl.py
| M	src/NEWS
| M	src/cmdline/CmdLineInterface.cpp
| M	src/cmdline/CmdLineInterface.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/matlab/MatlabInterface.cpp
| M	src/matlab/MatlabInterface.h
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| M	src/python/PythonInterface.cpp
| M	src/python/PythonInterface.h
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
|  
* commit 6061a1b74846690ccbbe0c7dbf6754f303108c6d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 2 09:18:51 2009 +0000
| 
|     fix bug in example
| 
| M	examples/libshogun/gnmpmkl.cpp
|  
* commit d9559c40370dc78f20f17d0acf9d9e8eb205fcc9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 23:09:17 2009 +0000
| 
|     add attribute features
| 
| A	src/libshogun/features/AttributeFeatures.cpp
| A	src/libshogun/features/AttributeFeatures.h
| M	src/libshogun/features/CombinedFeatures.h
| M	src/libshogun/lib/DynamicArray.h
| M	src/libshogunui/SGInterface.h
| M	src/modular/Features.i
|  
* commit 2babf413658da7b1a0b943770566be75b526ec78
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 21:46:35 2009 +0000
| 
|     don't be verbose
| 
| M	examples/matlab_and_octave/liblinear.m
| M	examples/matlab_and_octave/lik_kernel.m
| M	examples/matlab_and_octave/markov_chain.m
| M	examples/matlab_and_octave/string_features.m
| M	examples/matlab_and_octave/svmocas.m
| M	examples/matlab_and_octave/svmsgd.m
| M	examples/matlab_and_octave/tests/test_mkl_svr.m
| M	examples/matlab_and_octave/tests/test_mkl_svr_wrapper.m
| M	examples/matlab_and_octave/tests/test_regression_linadd.m
| M	examples/matlab_and_octave/wd_and_dot_features.m
| M	examples/matlab_and_octave/wd_kernel.m
| M	examples/matlab_and_octave/wds_kernel.m
| M	examples/matlab_and_octave/weighted_spec.m
| M	examples/matlab_and_octave/weighted_spec_features.m
|  
* commit 5097f04cff037a610dc0febcee3a734761ce11a3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 21:46:21 2009 +0000
| 
|     fix a bug in get_kernel_matrix
| 
| M	src/libshogun/kernel/Kernel.cpp
|  
* commit 52c381434cd81efcd35f00561703dc54685faa8f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 21:10:32 2009 +0000
| 
|     allow kernels with NULL as features
| 
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/kernel/Kernel.cpp
|  
* commit 5c7d3cf7e8dd3bdd7ed6be32bd41171ffefc7a08
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 20:47:53 2009 +0000
| 
|     disable elwms when interfaces are given
| 
| M	src/configure
|  
* commit 78c3a9ea3d0d29dafc5c3573e91ddd7f2a4771cb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 20:43:55 2009 +0000
| 
|     fix error printing in matlab, combined kernel needs an init when custom features are used
| 
| M	src/libshogun/features/CombinedFeatures.cpp
| M	src/libshogun/features/CombinedFeatures.h
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/kernel/CustomKernel.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/regression/svr/SVR_light.cpp
| M	src/libshogunui/GUIKernel.cpp
| M	src/matlab/MatlabInterface.cpp
|  
* commit 7711f67ee9e30e89d0d14d86e23d03f3639e12d1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 14:58:26 2009 +0000
| 
|     don't set verbosity in examples, fix compilation error in cmdline if and remove elwms Makefile
| 
| M	examples/matlab_and_octave/tests/test_classifier.m
| M	examples/matlab_and_octave/tests/test_combined.m
| M	examples/matlab_and_octave/tests/test_complex_scenario.m
| M	examples/matlab_and_octave/tests/test_custom_kernel.m
| M	examples/matlab_and_octave/tests/test_kernel_optimization.m
| M	examples/matlab_and_octave/tests/test_knn.m
| M	examples/matlab_and_octave/tests/test_l2svm.m
| M	examples/matlab_and_octave/tests/test_linadd.m
| M	examples/matlab_and_octave/tests/test_linear_methods.m
| M	examples/matlab_and_octave/tests/test_mkl.m
| M	examples/matlab_and_octave/tests/test_mkl_svr.m
| M	examples/matlab_and_octave/tests/test_one_class_svm.m
| M	examples/matlab_and_octave/tests/test_sliding_window.m
| M	examples/matlab_and_octave/tests/test_sparse.m
| M	examples/matlab_and_octave/tests/test_sparse_methods.m
| M	examples/matlab_and_octave/tests/test_subgradsvm.m
| M	examples/matlab_and_octave/tests/test_svmlight_libsvm.m
| M	examples/matlab_and_octave/tests/test_svrlight_libsvr.m
| M	examples/matlab_and_octave/tests/test_tppk.m
| M	examples/matlab_and_octave/tests/test_wd_kernel.m
| M	examples/matlab_and_octave/tests/test_wd_linadd.m
| M	examples/matlab_and_octave/tests/test_wdocas.m
| M	examples/matlab_and_octave/tests/test_wds_consensus.m
| M	examples/matlab_and_octave/tests/test_wds_kernel.m
| M	examples/matlab_and_octave/tests/test_wdshift_position_weights.m
| M	examples/matlab_and_octave/tests/test_weighted_spectrum.m
| M	src/Makefile.template
| M	src/cmdline/CmdLineInterface.cpp
| D	src/elwms/Makefile
|  
* commit ed28b89571c198debcd996f5d0b36a65ba37299f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 11:48:13 2009 +0000
| 
|     - rename elwms interface from sg to elwms (to avoid naming conflicts with other interfaces) and properly integrate it into ./configure and the standard install procedure
|     - update NEWS and INSTALL accordingly and support the whole spectrum of types from scalars to strings in translation
| 
| M	README
| M	examples/elwms/octave_to_python.m
| M	examples/elwms/r_to_python.R
| M	src/.r-install.sh
| M	src/INSTALL
| M	src/Makefile.template
| M	src/NEWS
| M	src/configure
| M	src/elwms/Makefile
| M	src/elwms/elwms.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/matlab/MatlabInterface.cpp
| M	src/octave/OctaveInterface.cpp
| M	src/python/PythonInterface.cpp
| M	src/r/RInterface.cpp
|  
* commit a45744574437ee91f4123de7d3342a03b616e9e2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 11:32:00 2009 +0000
| 
|     bugfix in example
| 
| M	examples/matlab_and_octave/weighted_spec_features.m
|  
* commit db1ff7aeff68ec15fca47da4bc330cba62cf2ecf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 00:50:24 2009 +0000
| 
|     2008 -> 2009
| 
| M	src/libshogun/base/Version.h
|  
* commit 1336ff2fcebda55ddc07917b79eaecbc7858bd40
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 00:29:40 2009 +0000
| 
|     also accept scalars as vec/matrix
| 
| M	src/octave/OctaveInterface.cpp
|  
* commit 3ef61594fd4b9f19afbc42d2bd0ea0fd73674268
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 00:06:03 2009 +0000
| 
|     - don't actually print anything on SG_ERROR (as it throws an exception anyway - so only print the error then)
|     - fix a clash in R and octave error function (in elwms interface), also don't require result to be a dictionary, make it a tuple
| 
| M	examples/elwms/octave_to_python.m
| M	examples/elwms/r_to_python.R
| M	src/elwms/elwms.cpp
| M	src/matlab/MatlabInterface.cpp
| M	src/octave/OctaveInterface.cpp
| M	src/python/PythonInterface.cpp
| M	src/r/RInterface.cpp
|  
* commit bbcfc777f958d1d4b19a79a94a6efd5d8b1096dc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 28 10:18:08 2009 +0000
| 
|     dynamically load the python libs to global context
|     (since matlab/R don't load them automagically they fail due to missing
|      symbols), do at least try to get the python version right
| 
| M	src/configure
| M	src/elwms/Makefile
| M	src/matlab/MatlabInterface.cpp
| M	src/r/RInterface.cpp
|  
* commit 1039160ccc0c891d79ad589887c38edb25b609d6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 28 09:50:38 2009 +0000
| 
|     get the run_python command to work in r,octave and matlab, also release memory of converted matrices
| 
| M	src/elwms/Makefile
| M	src/elwms/elwms.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/matlab/MatlabInterface.cpp
| M	src/matlab/MatlabInterface.h
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| M	src/python/PythonInterface.cpp
| M	src/python/PythonInterface.h
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
|  
* commit 0df3afe6ac38b73eaddfb0dc605968100f331d6f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 28 09:49:15 2009 +0000
| 
|     add example for R; example for matlab is the same as for octave
| 
| A	examples/elwms/r_to_python.R
|  
* commit 1f43d62e060bd5b23fa14132c76c057d33144a26
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 28 07:12:29 2009 +0000
| 
|     octave to python translator now functional
| 
| A	examples/elwms/octave_to_python.m
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/octave/OctaveInterface.cpp
| M	src/python/PythonInterface.cpp
| M	src/python/PythonInterface.h
|  
* commit fd88175afa61d786111123369c2187734f7d4416
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 27 23:27:31 2009 +0000
| 
|     add run_python command to the eierlegendewollmilchsau which will translate octave variables into python variables, execute python code and translate the variables back into octave *currently returning a matrix works*
| 
| M	src/NEWS
| M	src/elwms/Makefile
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
|  
* commit fea473f163015437038c0e1b467187a96f8ed603
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 27 21:09:23 2009 +0000
| 
|     - *taddaaa* I hereby proudly present THE EIERLEGENDEWOLLMILCHSAU (elwms), that is a *single file* that constitutes a interfaces to python, octave, R and matlab all at the same time - yes now one shoe^H^H^H^Hfile that fits all.
|     - minor warning fixes in interface, update NEWS
| 
| M	src/NEWS
| A	src/elwms/Makefile
| A	src/elwms/elwms.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/octave/OctaveInterface.h
|  
* commit 3956712b8db6de67dbbb36dc13d9203dfe19eeed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 27 19:56:21 2009 +0000
| 
|     adjust example (simplified a lot!)
| 
| M	examples/libshogun/Makefile
| M	examples/libshogun/gnmpmkl.cpp
|  
* commit aa825379740e58ee7de761745d9fefdf61c66044
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 27 19:55:54 2009 +0000
| 
|     sole combined kernel based on custom kernels no longer requires features nor init
| 
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/gmnpmkl.cpp
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/kernel/CustomKernel.cpp
| M	src/libshogun/kernel/CustomKernel.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/KernelMachine.cpp
|  
* commit 28339a0a6c7a63065798f493cb90fae82387490d
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Feb 27 16:28:18 2009 +0000
| 
|     fixed compile errors in debug code
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit 1b3d34d68f3d0c809eb8fdd333e8012ee13938c5
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Feb 27 09:58:33 2009 +0000
| 
|     -- bugfix: precompute stop codons for precomp interface as well
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit 4dbf549b3092eff83b342f52bb7ad7219c85fd99
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Feb 27 09:58:31 2009 +0000
| 
|     - double declaration removed
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit eed3acf17a8330cbe10a538187ccdfa98ef79921
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Feb 27 09:58:29 2009 +0000
| 
|     - some SG_PRINTs removed
|     - changed function init_content_svm_value_array such that all arguments are now passed,
|       instead of using member variables
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit 6ffef692b0e9a37082eff8eeb7fa8d1134305515
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 26 18:23:46 2009 +0000
| 
|     fix size?
| 
| M	src/octave/OctaveInterface.cpp
|  
* commit f55d90b2710766ba1962bc8ea1dcae41c19a5181
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 26 18:03:19 2009 +0000
| 
|     potentially get nd arrays to work
| 
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
|  
* commit eb9240db9e2b4e2b4b3f8e1599ca7855e37289e5
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Thu Feb 26 17:16:02 2009 +0000
| 
|     Hard coded for Cheng
| 
| A	testsuite/test_configure.py
|  
* commit a35e1a0fa9db5ab49680968eababfe75e09bdec8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 26 16:45:25 2009 +0000
| 
|     fix install
| 
| M	src/Makefile.template
|  
* commit 1bc683866f5127eb4ab678aae084b9ad707e0386
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 25 22:35:34 2009 +0000
| 
|     this adds checks to configure that does not allow building using an illegal
|     config, e.g. --interfaces=python_modular  will trigger an error since libshogun
|     is missing, --interfaces=libshogun,python_modular will work nicely etc
| 
| M	src/configure
|  
* commit 4bf45d44a560358e533d5548cd5214c9183f1bef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 25 15:22:25 2009 +0000
| 
|     always call ldconfig and create symlinks to soname/library name manually
| 
| M	src/Makefile.template
|  
* commit d3f6357b1d03ae8a26c1c9b5ceab97ffdf5f5672
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 25 10:54:39 2009 +0000
| 
|     fix svm light removal
| 
| M	Makefile
|  
* commit 90d9de347163fd824c2fe4f52e472b2c3e2921e4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 25 08:54:40 2009 +0000
| 
|     this changes the syntax of the custom kernel. a simple
|     
|     sg('set_kernel', 'CUSTOM', km, 'FULL2DIAG');
|     
|     is enough now too in static interfaces, no features nor init required
| 
| M	doc/Doxyfile
| M	doc/pages/DeveloperTutorial.mainpage
| M	doc/pages/ModularTutorial.mainpage
| M	doc/pages/StaticTutorial.mainpage
| A	doc/pages/developerreadme.mainpage
| A	doc/pages/soname.mainpage
| A	examples/matlab_and_octave/custom_kernel.m
| A	examples/octave_modular/custom_kernel.m
| A	examples/python_modular/custom_kernel.py
| M	src/NEWS
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/GUIKernel.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit 28e72a0d2459213c97b0a74d410c348ef037cd60
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 24 22:08:54 2009 +0000
| 
|     configure / make should work now when libshogun / libshogunui are installed but the local libshogun/libshogunui directories are missing
| 
| M	src/.generate_link_dependencies.py
| M	src/Makefile.template
| M	src/configure
|  
* commit bec654171545607e97d813788bc0c516ffa6205b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 24 17:34:21 2009 +0000
| 
|     update copyright to 2009 in lib and base
| 
| M	src/libshogun/base/Parallel.cpp
| M	src/libshogun/base/Parallel.h
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/Version.cpp
| M	src/libshogun/base/Version.h
| M	src/libshogun/base/init.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/lib/Array.h
| M	src/libshogun/lib/Array2.h
| M	src/libshogun/lib/Array3.h
| M	src/libshogun/lib/Cache.h
| M	src/libshogun/lib/Cplex.cpp
| M	src/libshogun/lib/Cplex.h
| M	src/libshogun/lib/File.cpp
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/List.h
| M	src/libshogun/lib/Mathematics.cpp
| M	src/libshogun/lib/ShogunException.cpp
| M	src/libshogun/lib/ShogunException.h
| M	src/libshogun/lib/Signal.cpp
| M	src/libshogun/lib/SimpleFile.h
| M	src/libshogun/lib/Time.cpp
| M	src/libshogun/lib/Time.h
| M	src/libshogun/lib/Trie.cpp
| M	src/libshogun/lib/Trie.h
| M	src/libshogun/lib/io.cpp
| M	src/libshogun/lib/io.h
| M	src/libshogun/lib/lapack.cpp
| M	src/libshogun/lib/lapack.h
| M	src/libshogun/lib/memory.cpp
| M	src/libshogun/lib/memory.h
|  
* commit a1434904097da03135cb4c881f7ce6acbb06f936
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 24 17:33:57 2009 +0000
| 
|     ifdef pthread mutex handling
| 
| M	src/libshogun/base/SGObject.h
|  
* commit f9915dcb74421dbd794fa31c36a29024a0f14e42
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 24 16:30:41 2009 +0000
| 
|     test if variables are set and then uninstall things, undo changes in configure
| 
| M	src/Makefile
| M	src/configure
|  
* commit eede095027250784bb2e0c155f35acabe406ce63
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Tue Feb 24 15:40:25 2009 +0000
| 
|     Hack for cleaning up installed shogun, make uninstall
| 
| M	src/Makefile
| M	src/Makefile.template
| M	src/configure
|  
* commit dc7bd11e0e7a4a2bbcd7c06936ba45783883268e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 24 06:46:19 2009 +0000
| 
|     this should not skip over custom kernels on init (so users don't need to assign
|     features to custom kernels in combined features)
| 
| M	src/libshogun/kernel/CombinedKernel.cpp
|  
* commit 431f9a79418407686012d50fccbd501b6d75c387
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 23 19:38:38 2009 +0000
| 
|     fix an error in configure that always de-selected matlab
| 
| M	src/configure
|  
* commit 487560cdf3927921096101870e2a93ea30552369
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 23 18:13:46 2009 +0000
| 
|     potentially fix a compile error for people that have libshogun headers installed in the same path as they are installing to
| 
| M	src/configure
|  
* commit d07e21ee21b105dfcab9bc5efd9131a759cf4aff
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 23 17:43:20 2009 +0000
| 
|     fix a tricky to trigger tricky to find bug occurring only with num_threads > 1 linadd enabled kernels in the combined kernel: reference counts require mutex locking to avoid accidental destruction of objects.
| 
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CommWordStringKernel.cpp
| M	src/libshogun/kernel/CommWordStringKernel.h
| M	src/libshogun/kernel/Kernel.cpp
|  
* commit 67ce47733afdcb3cba22c62364c19b1bc277e08d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 23 15:08:40 2009 +0000
| 
|     removed some crappy lines introducing a compile failure in python_modular
| 
| M	src/python_modular/swig_typemaps.i
|  
* commit 9700a6abbcc256d029339ad37a79b122849b386e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 23 10:08:49 2009 +0000
| 
|     work on sparse features for python
| 
| M	src/python_modular/swig_typemaps.i
|  
* commit c72b5aed3cf4c70847bfaf01179f5cfaf668656d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 23 10:08:31 2009 +0000
| 
|     minor reformatting
| 
| M	src/README.developer
| M	src/README.soname
|  
* commit ef51fe2d930eacfabd5f8aea603a8c615434dc2d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 23 08:55:43 2009 +0000
| 
|     polish documentation
| 
| M	doc/Doxyfile
| M	doc/pages/Authors.mainpage
| M	doc/pages/DeveloperTutorial.mainpage
| M	doc/pages/Documentation.mainpage
| M	doc/pages/FAQ.mainpage
| M	doc/pages/Installation.mainpage
| M	doc/pages/Tutorial.mainpage
| M	src/INSTALL
| M	src/README.developer
| M	src/README.soname
| M	src/libshogun/base/init.h
| M	src/libshogun/classifier/svm/SVM_light.h
|  
* commit 79db61cf015b047fe79bf4f7582fbf6d00d2c9bf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 23 08:55:01 2009 +0000
| 
|     remove copyright from basic examples (they are included on webpage and thus only hurts..)
| 
| M	examples/libshogun/minimal.cpp
| M	examples/libshogun/minimal_svm.cpp
|  
* commit e5d6f4d12141066431e6cb3963c48805d7f231d8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 22 12:51:57 2009 +0000
| 
|     merge swig interface files
| 
| M	src/NEWS
| D	src/modular/AUCKernel.i
| D	src/modular/Alphabet.i
| D	src/modular/Array.i
| D	src/modular/Array2.i
| D	src/modular/Array3.i
| D	src/modular/AvgDiagKernelNormalizer.i
| D	src/modular/BrayCurtisDistance.i
| D	src/modular/ByteFeatures.i
| D	src/modular/Cache.i
| D	src/modular/CanberraMetric.i
| D	src/modular/CanberraWordDistance.i
| D	src/modular/CharFeatures.i
| D	src/modular/ChebyshewMetric.i
| D	src/modular/Chi2Kernel.i
| D	src/modular/ChiSquareDistance.i
| M	src/modular/Classifier.i
| M	src/modular/Clustering.i
| D	src/modular/CombinedDotFeatures.i
| D	src/modular/CombinedFeatures.i
| D	src/modular/CombinedKernel.i
| D	src/modular/CommUlongStringKernel.i
| D	src/modular/CommWordStringKernel.i
| D	src/modular/ConstKernel.i
| D	src/modular/CosineDistance.i
| D	src/modular/CustomKernel.i
| D	src/modular/DiagKernel.i
| D	src/modular/DiceKernelNormalizer.i
| M	src/modular/Distance.i
| D	src/modular/DistanceKernel.i
| D	src/modular/DistanceMachine.i
| M	src/modular/Distribution.i
| D	src/modular/DotFeatures.i
| D	src/modular/DummyFeatures.i
| D	src/modular/DynProg.i
| D	src/modular/DynamicArray.i
| D	src/modular/EuclidianDistance.i
| M	src/modular/Evaluation.i
| D	src/modular/ExplicitSpecFeatures.i
| D	src/modular/FKFeatures.i
| M	src/modular/Features.i
| D	src/modular/File.i
| D	src/modular/FixedDegreeStringKernel.i
| D	src/modular/GHMM.i
| D	src/modular/GMNPSVM.i
| D	src/modular/GNPPSVM.i
| D	src/modular/GPBTSVM.i
| D	src/modular/GaussianKernel.i
| D	src/modular/GaussianShiftKernel.i
| D	src/modular/GaussianShortRealKernel.i
| D	src/modular/GeodesicMetric.i
| D	src/modular/HMM.i
| D	src/modular/HammingWordDistance.i
| D	src/modular/Hierarchical.i
| D	src/modular/Histogram.i
| D	src/modular/HistogramWordStringKernel.i
| D	src/modular/IdentityKernelNormalizer.i
| D	src/modular/ImplicitWeightedSpecFeatures.i
| D	src/modular/IntFeatures.i
| D	src/modular/JensenMetric.i
| D	src/modular/KMeans.i
| D	src/modular/KNN.i
| D	src/modular/KRR.i
| M	src/modular/Kernel.i
| D	src/modular/KernelMachine.i
| D	src/modular/KernelNormalizer.i
| D	src/modular/KernelPerceptron.i
| D	src/modular/LDA.i
| D	src/modular/LPBoost.i
| D	src/modular/LPM.i
| D	src/modular/Labels.i
| D	src/modular/LibLinear.i
| D	src/modular/LibSVM.i
| D	src/modular/LibSVMMultiClass.i
| D	src/modular/LibSVMOneClass.i
| D	src/modular/LibSVR.i
| M	src/modular/Library.i
| D	src/modular/LinearByteKernel.i
| D	src/modular/LinearClassifier.i
| D	src/modular/LinearHMM.i
| D	src/modular/LinearKernel.i
| D	src/modular/LinearStringKernel.i
| D	src/modular/LinearWordKernel.i
| D	src/modular/List.i
| D	src/modular/LocalAlignmentStringKernel.i
| D	src/modular/LocalityImprovedStringKernel.i
| D	src/modular/LogPlusOne.i
| D	src/modular/MPDSVM.i
| D	src/modular/ManhattanMetric.i
| D	src/modular/ManhattanWordDistance.i
| D	src/modular/MatchWordStringKernel.i
| D	src/modular/Mathematics.i
| D	src/modular/MindyGramFeatures.i
| D	src/modular/MindyGramKernel.i
| D	src/modular/MinkowskiMetric.i
| D	src/modular/MultiClassSVM.i
| D	src/modular/NormDerivativeLem3.i
| D	src/modular/NormOne.i
| D	src/modular/OligoKernel.i
| D	src/modular/PCACut.i
| D	src/modular/Parallel.i
| D	src/modular/Perceptron.i
| D	src/modular/PerformanceMeasures.i
| D	src/modular/Plif.i
| D	src/modular/PlifArray.i
| D	src/modular/PlifBase.i
| D	src/modular/PluginEstimate.i
| D	src/modular/PolyKernel.i
| D	src/modular/PolyMatchStringKernel.i
| D	src/modular/PolyMatchWordStringKernel.i
| M	src/modular/PreProc.i
| D	src/modular/PruneVarSubMean.i
| D	src/modular/PyramidChi2.i
| D	src/modular/RealDistance.i
| D	src/modular/RealFeatures.i
| D	src/modular/RealFileFeatures.i
| M	src/modular/Regression.i
| A	src/modular/SGBase.i
| D	src/modular/SGObject.i
| D	src/modular/SVM.i
| D	src/modular/SVMLin.i
| D	src/modular/SVMOcas.i
| D	src/modular/SVMSGD.i
| D	src/modular/SVM_light.i
| D	src/modular/SVR_light.i
| D	src/modular/SalzbergWordStringKernel.i
| D	src/modular/ShogunException.i
| D	src/modular/ShortFeatures.i
| D	src/modular/ShortRealFeatures.i
| D	src/modular/SigmoidKernel.i
| D	src/modular/Signal.i
| D	src/modular/SimpleDistance.i
| D	src/modular/SimpleFeatures.i
| D	src/modular/SimpleFile.i
| D	src/modular/SimpleKernel.i
| D	src/modular/SimpleLocalityImprovedStringKernel.i
| D	src/modular/SimplePreProc.i
| D	src/modular/SortUlongString.i
| D	src/modular/SortWordString.i
| D	src/modular/SparseDistance.i
| D	src/modular/SparseEuclidianDistance.i
| D	src/modular/SparseFeatures.i
| D	src/modular/SparseGaussianKernel.i
| D	src/modular/SparseKernel.i
| D	src/modular/SparseLinearKernel.i
| D	src/modular/SparsePolyKernel.i
| D	src/modular/SparsePreProc.i
| D	src/modular/SqrtDiagKernelNormalizer.i
| D	src/modular/StringDistance.i
| D	src/modular/StringFeatures.i
| D	src/modular/StringKernel.i
| D	src/modular/StringPreProc.i
| M	src/modular/Structure.i
| D	src/modular/SubGradientLPM.i
| D	src/modular/SubGradientSVM.i
| D	src/modular/TOPFeatures.i
| D	src/modular/TanimotoDistance.i
| D	src/modular/TanimotoKernelNormalizer.i
| D	src/modular/TensorProductPairKernel.i
| D	src/modular/Time.i
| D	src/modular/Trie.i
| D	src/modular/Version.i
| D	src/modular/WDFeatures.i
| D	src/modular/WDSVMOcas.i
| D	src/modular/WeightedCommWordStringKernel.i
| D	src/modular/WeightedDegreePositionStringKernel.i
| D	src/modular/WeightedDegreeStringKernel.i
| D	src/modular/WordFeatures.i
| D	src/modular/common.i
| D	src/modular/init.i
| D	src/modular/io.i
| D	src/modular/lapack.i
| M	src/octave_modular/swig_typemaps.i
| M	src/python_modular/swig_typemaps.i
| M	src/r_modular/swig_typemaps.i
|  
* commit 94d1390f20b764b7eafc07a318b1e70b8fdf595d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 22 12:49:44 2009 +0000
| 
|     add some tutorial bits
| 
| M	doc/Doxyfile
| M	doc/pages/Documentation.mainpage
| M	doc/pages/ModularTutorial.mainpage
| M	doc/pages/StaticTutorial.mainpage
| M	doc/pages/Tutorial.mainpage
|  
* commit 6b628bf88fda59ed1af9dad28f9b0e352f451897
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 22 12:46:55 2009 +0000
| 
|     add lots of documentation and fix a naming collision w/ kernel normalizers
| 
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/ExplicitSpecFeatures.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/WDFeatures.h
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/kernel/CommWordStringKernel.h
| M	src/libshogun/kernel/DiceKernelNormalizer.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/lib/io.h
| M	src/libshogun/structure/DynProg.h
|  
* commit 03ce90aff5b61f5a2557521d58caf93ff40c2340
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 20 21:47:35 2009 +0000
| 
|     start some tutorial
| 
| A	doc/pages/DeveloperTutorial.mainpage
| A	doc/pages/ModularTutorial.mainpage
| A	doc/pages/StaticTutorial.mainpage
| M	doc/pages/Tutorial.mainpage
| M	src/NEWS
|  
* commit c59882a0ad06232d26bc9a46864a6fef1958047e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 20 17:41:16 2009 +0000
| 
|     an attempt to allow building of modular if's only
| 
| M	src/configure
|  
* commit a8abb5c99b2dfd8a7806782998d57c769750e9e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 20 09:29:27 2009 +0000
| 
|     Preparing for new Release shogun_0.7.0
| 
| M	Makefile
| M	doc/Doxyfile
|  
* commit 4f8e82559200b4d2f8aecd7c214eb09af82e01c8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 20 09:28:10 2009 +0000
| 
|     updated reference documentation
| 
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
|  
* commit 4cb1f4ed79f68877e275b256ec3b3cfa9726fea7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 20 09:14:38 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 8a11b9fc9b70f10290ea34e452a578e913fb3228
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 20 09:11:32 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 35cae83bdca8b4becb4d1afa498b50299b09a38a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 20 09:09:41 2009 +0000
| 
|     preparing for release
| 
| M	README
| M	src/NEWS
| M	testsuite/data/classifier/SVMOcas_30_1en05_16_05_False.m
| M	testsuite/data/classifier/SVMOcas_30_1en05_1_05_False.m
| M	testsuite/matlab_and_octave/classifier.m
|  
* commit d811279b1a9da00affce0131c203fb806f0ac697
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 19 17:56:29 2009 +0000
| 
|     fix alphabet
| 
| M	testsuite/python_modular/util.py
|  
* commit 64956a4fdf704dd2910dbd6189c2e5f0dfaccb76
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 19 16:36:01 2009 +0000
| 
|     fix hmm test
| 
| M	testsuite/data/distribution/HMM_1en10_60_4_1_0_6_3_False_CUBE.m
| M	testsuite/generator/featop.py
|  
* commit 3bfa81719436d4c47f260284eed5db5d3a4ddad1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 19 16:12:57 2009 +0000
| 
|     remove broken ocas and wdocas tests on DNA, disable bias in vanilla ocas test,
|     disable r_modular by default (as long as garbage collections is
|     dysfunctional it better stays like this)
| 
| M	src/configure
| M	src/libshogun/lib/Signal.h
| M	src/modular/init.i
| D	testsuite/data/classifier/SVMOcas_0017_1en05_1_RAWDNA_1_False.m
| D	testsuite/data/classifier/SVMOcas_023_1en05_1_RAWDNA_1_False.m
| D	testsuite/data/classifier/SVMOcas_15_1en05_1_RAWDNA_1_False.m
| D	testsuite/data/classifier/SVMOcas_30_1en05_16_RAWDNA_1_False.m
| D	testsuite/data/classifier/SVMOcas_30_1en05_1_RAWDNA_1_False.m
| D	testsuite/data/classifier/WDSVMOcas_0017_1en05_1_1_RAWDNA_1_0_False_60_False.m
| D	testsuite/data/classifier/WDSVMOcas_023_1en05_1_1_RAWDNA_1_0_False_60_False.m
| D	testsuite/data/classifier/WDSVMOcas_15_1en05_1_1_RAWDNA_1_0_False_60_False.m
| D	testsuite/data/classifier/WDSVMOcas_30_1en05_16_1_RAWDNA_1_0_False_60_False.m
| D	testsuite/data/classifier/WDSVMOcas_30_1en05_1_1_RAWDNA_1_0_False_60_False.m
| M	testsuite/octave_modular/classifier.m
|  
* commit 3f7592657a3f6bedc65f5aa219bfeb179caba794
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 19 14:05:48 2009 +0000
| 
|     add check scripts for libshogun based examples
| 
| M	examples/libshogun/Makefile
| A	examples/libshogun/gnmpmkl.cpp
| D	examples/libshogun/gnmpmkltester.cpp
| M	src/Makefile.template
|  
* commit df6bc813c6523f4f9e12b2fde52fa6c08c616a15
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 18 15:51:48 2009 +0000
| 
|     fix building of modular interfaces
| 
| M	src/libshogun/distributions/hmm/HMM.h
| M	src/modular/Classifier.i
| M	src/modular/Clustering.i
| M	src/modular/Distance.i
| M	src/modular/Distribution.i
| M	src/modular/Evaluation.i
| M	src/modular/Features.i
| M	src/modular/Kernel.i
| M	src/modular/Library.i
| M	src/modular/PreProc.i
| M	src/modular/Regression.i
| M	src/modular/Structure.i
| A	src/modular/init.i
| M	src/octave_modular/sg_print_functions.cpp
| M	src/python_modular/sg_print_functions.cpp
| M	src/r_modular/sg_print_functions.cpp
|  
* commit 90914cdc9509ecddaea462c688074b08c39ac8b2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 16 15:07:20 2009 +0000
| 
|     set_svm has to do SG_REF
| 
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/gmnpmkl.cpp
| M	src/libshogun/classifier/svm/gmnpmkl.h
|  
* commit 0957da882acd704b61734c4876a5c2fdeab05b92
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Mon Feb 16 14:48:14 2009 +0000
| 
|     adapted to new version of SG_REF/SG_UNREF scheme,gnmpmkltester is now leakfree
| 
| M	examples/libshogun/gnmpmkltester.cpp
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/gmnpmkl.cpp
|  
* commit b5e6bfc8d6076c8e9d091f08bf2bc32b0ff43bf7
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Mon Feb 16 10:02:58 2009 +0000
| 
|     Swap link order for atlas based on http://math-atlas.sourceforge.net/errata.html#LINK
| 
| M	src/configure
|  
* commit a14b92b709ad8c60ff03130941b8c5edd146d8b1
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Mon Feb 16 09:33:44 2009 +0000
| 
|     fix typo
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit d2746c899d76b89b057bb6318830fa3e819cd93d
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Mon Feb 16 09:12:34 2009 +0000
| 
|     fix problem with direct passing of precomputed linear feature arrays
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit d30adb5b57c39944e6728f76146850ce536d3e9b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 14 16:55:33 2009 +0000
| 
|     add a minimal libshogun example and a minimal svm
| 
| M	examples/libshogun/Makefile
| A	examples/libshogun/minimal.cpp
| A	examples/libshogun/minimal_svm.cpp
|  
* commit 22d732650e3860a390317f39c4fae9f2f1f1c185
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 14 16:54:57 2009 +0000
| 
|     add introduction on how to develop shogun extensions and/or use libshogun
| 
| M	src/README.developer
|  
* commit 0b3e3a95ecde64afc0ace589fbdd38970c64b44d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 14 05:15:18 2009 +0000
| 
|     remove convenience constructor as it won't allow us to check whether number of kernels matches number of features
| 
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.h
|  
* commit 1a8adc5747e4df36434b4cbd78b9df75c8a204fb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 14 04:53:13 2009 +0000
| 
|     fix example and include in makefile
| 
| M	examples/libshogun/Makefile
| M	examples/libshogun/gnmpmkltester.cpp
|  
* commit fe7cd953983b093bc55192031fdb7f1cc86a00e2
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Fri Feb 13 20:10:00 2009 +0000
| 
|     bugfix in .h: added correct path to an include
|     .cpp : modified for new shogun, version does not work yet
| 
| M	examples/libshogun/gnmpmkltester.cpp
| M	src/libshogun/classifier/svm/gmnpmkl.h
|  
* commit 2472e880fc8cf6fb742d62c32e9818a9400f8403
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 13 17:05:53 2009 +0000
| 
|     add header
| 
| M	examples/libshogun/Makefile
| M	examples/libshogun/rbf_svm.cpp
|  
* commit b34376fb6680afd0979bb3b17257cff508f3ef84
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 13 16:13:31 2009 +0000
| 
|     fix include brackets
| 
| M	src/Makefile.template
|  
* commit 4429d0e110280e97a8dca8de2f79d67383fa0e22
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 13 16:06:32 2009 +0000
| 
|     update example
| 
| M	examples/libshogun/Makefile
| M	examples/libshogun/rbf_svm.cpp
|  
* commit 93e1b6da5c5771ba613cf33ad6eebd447290dd95
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 13 15:23:56 2009 +0000
| 
|     test for SED specific -i flag
| 
| M	src/Makefile.template
| M	src/configure
|  
* commit c13e1a401f660a5fd281db4898a8c450eba3ce0e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 13 15:17:11 2009 +0000
| 
|     fix typo
| 
| M	src/configure
|  
* commit 3f94f8f06fac1f02317963f386a095cefa0bb0a5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 13 14:46:33 2009 +0000
| 
|     fix make install on osx
| 
| M	src/Makefile.template
|  
* commit 526250f076056b03ed7ed01fabeac49b00aa3edc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 13 14:34:05 2009 +0000
| 
|     several compile fixes for osx
| 
| M	src/Makefile.template
| M	src/cmdline/CmdLineInterface.cpp
| M	src/configure
|  
* commit 7b1e8352916bdf43b0d939cc4f7fefe081435013
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 13 13:13:21 2009 +0000
| 
|     ci forgotten files
| 
| A	src/libshogun/base/init.cpp
| A	src/libshogun/base/init.h
|  
* commit d69a4515fdf0a70755866ce28fc79efc6f277383
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Feb 13 13:12:25 2009 +0000
| 
|     -- bugfix: deleted DynProg object to early
|     	-> now valgrind is happy
|     
|     -- Error handling with more informative outputs
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit dcb7a29335e015f9fc6dc00e81db76f12d48f871
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 13 13:10:08 2009 +0000
| 
|     finally get all interfaces to dynamically use libshogun
| 
| M	src/Makefile.template
| M	src/configure
| M	src/matlab/MatlabInterface.cpp
| M	src/octave/OctaveInterface.cpp
| M	src/python/PythonInterface.cpp
| M	src/r/RInterface.cpp
|  
* commit cf2fa7aad74c7558fb285d3445cea9cbd82d3d75
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 13 09:29:13 2009 +0000
| 
|     libshogun now has global pointers to function callbacks instead of unresolved symbols
| 
| M	src/Makefile.template
| M	src/configure
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/base/Version.h
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/lib/Signal.cpp
| M	src/libshogun/lib/Signal.h
| M	src/libshogun/lib/io.cpp
| M	src/libshogun/lib/io.h
| M	src/matlab/MatlabInterface.cpp
| M	src/matlab/MatlabInterface.h
| D	src/matlab/matlab.cpp
| D	src/matlab/matlab.h
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| D	src/octave/octave.cpp
| D	src/octave/octave.h
| M	src/python/PythonInterface.cpp
| M	src/python/PythonInterface.h
| D	src/python/python.cpp
| D	src/python/python.h
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
| D	src/r/r.cpp
| D	src/r/r.h
|  
* commit 4bc6076332a9416c81ac52ab67ec49b59d0f9179
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 22:05:08 2009 +0000
| 
|     get configure to work for modular interfaces again
| 
| M	src/configure
|  
* commit 42708a56387e62fb388aaf98e1bcd02a8543d54e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 21:45:27 2009 +0000
| 
|     add missing "
| 
| M	Makefile
|  
* commit 5f49345451edfe993147ab154ff10d6897a5a3d7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 21:42:31 2009 +0000
| 
|     fix top-level make, update news and changelog
| 
| M	Makefile
| M	src/ChangeLog
| M	src/NEWS
|  
* commit 77b1417465ebcb2f1994a8331f762595d23e467f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 20:18:08 2009 +0000
| 
|     get parallel HMM code to work again (it actually never really worked...)
| 
| M	src/libshogun/distributions/hmm/HMM.cpp
| M	src/libshogun/distributions/hmm/HMM.h
|  
* commit 1f61ae8e25e4033f0c91ad3c5d1dd76e7e35742c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 16:28:41 2009 +0000
| 
|     remove NOVIT test in HMM which increases code readability by factor 10, remove cruft from configure and update NEWS
| 
| M	src/NEWS
| M	src/configure
| M	src/libshogun/distributions/hmm/HMM.cpp
| M	src/libshogun/distributions/hmm/HMM.h
|  
* commit 60b92c38dfdaed9f20362cd71d992919c6d11376
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 15:50:50 2009 +0000
| 
|     update copyright
| 
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.h
|  
* commit 47de6870357787587c6008a341586a23d757fab0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 15:40:21 2009 +0000
| 
|     update to libsvm 2.88
| 
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
|  
* commit f6223bedbc417d469caef7cf0d2ab153d5352d03
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 15:33:16 2009 +0000
| 
|     remove further cruft
| 
| M	src/configure
|  
* commit ed11583aebeba87d2b9060c08939c8727ff4e915
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 11:52:23 2009 +0000
| 
|     fix a bug that screwed up HMM training introduced in shogun 0.5.0 (!)
| 
| M	src/libshogun/distributions/hmm/HMM.cpp
|  
* commit 8c77c810815a6e7893a53089fdb0a459974c0aa9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 11:13:28 2009 +0000
| 
|     remove HAVE_SWIG / USE_SWIG cruft
| 
| M	src/configure
|  
* commit 835946726c3a5127e71f9c1e8027061838d34d2f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 10:47:34 2009 +0000
| 
|     support ctrl+c in hmm training
| 
| M	src/libshogun/distributions/hmm/HMM.cpp
| M	src/libshogun/distributions/hmm/HMM.h
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/lib/Signal.cpp
|  
* commit dfbd50c01f39d8c6f2405a853c806cde3fe74c5c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 09:28:41 2009 +0000
| 
|     add document explaining when to change .soname
| 
| A	src/README.soname
|  
* commit e6e5c1a47345ffa0f3c290933c3e5825eb8d7bea
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 09:13:48 2009 +0000
| 
|     use logcache/parallel hmm structures per default
| 
| M	src/configure
| M	src/libshogun/distributions/hmm/HMM.cpp
| M	src/libshogun/distributions/hmm/HMM.h
| M	src/libshogun/lib/Mathematics.cpp
| M	src/libshogun/lib/Mathematics.h
|  
* commit 63f5fc65a8549e2097f9e1fba0760b645073f89f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 11 21:59:00 2009 +0000
| 
|     use a different logic to aid re-use of alphabet objects
| 
| M	src/libshogun/features/StringFeatures.h
|  
* commit f1d20993a71add8e5ae68bd86af9890e404ec1b0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 11 21:17:05 2009 +0000
| 
|     add a little more debug output and make make install possible for subdirs
| 
| M	src/Makefile.template
| M	src/libshogun/distributions/histogram/Histogram.h
| M	src/libshogun/features/StringFeatures.h
|  
* commit e8bc260587130a1a32d2375c2949e260142d98cb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 11 15:12:38 2009 +0000
| 
|     dynamically detect library name suffixes, and perform some symlink soname magic
|     add wrappers for run-testsuite, check-examples and make install in Makefile.template.
|     
|     make set_features (in string features) protected. add a typemap that allows FILE* conversion from python files
| 
| M	src/Makefile
| M	src/Makefile.template
| M	src/configure
| M	src/libshogun/features/StringFeatures.h
| M	src/python_modular/swig_typemaps.i
|  
* commit 6f96a1e3f66b1f5d5d74e4205a4dec24c4da0b81
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 11 14:57:10 2009 +0000
| 
|     fix wd mkl example
| 
| M	examples/r/wd_mkl.R
|  
* commit ccf9cf77254e9028641c982f12ef2c85f236116c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 11 14:56:18 2009 +0000
| 
|     fix mkl R example
| 
| M	examples/r/mkl_classify_christmas_star.R
|  
* commit a3334a9c89628b8ef2eb4dad24648dde8b4bb807
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 11 14:46:51 2009 +0000
| 
|     fix combined kernel example bug
| 
| M	examples/python/all_kernels.py
|  
* commit 933ea9ce9f9a5f80d71f157fa2138f14e0c90cb9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 11 05:24:09 2009 +0000
| 
|     it turns out that install does not preserve symbolic links, use ln & ldconfig instead
| 
| M	src/Makefile.template
| M	src/configure
|  
* commit 0114fd82b96d66acbf4b6aae6e700d8babd200ff
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 11 05:21:03 2009 +0000
| 
|     remove obsolete use_precompute
| 
| M	examples/r/string_kernel.R
|  
* commit c1e4aed1f9429a8262652e4d4f352831d2d63292
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 11 05:19:52 2009 +0000
| 
|     fix same bug in R examples
| 
| M	examples/r/all_kernels.R
|  
* commit 47e08883660e4f6202c1c6fbd049b85999f786b9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 11 05:17:54 2009 +0000
| 
|     fix bug in combined kernel example
| 
| M	examples/matlab_and_octave/all_kernels.m
|  
* commit 59c7fb06eb81c4db144d2432c5a5b30e9937e080
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 10 18:53:45 2009 +0000
| 
|     further compile fixes for osx
| 
| M	src/configure
| M	src/libshogun/lib/Mathematics.h
|  
* commit e733e9f3140b49ab7475784697729ebe106ec10b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 10 17:08:20 2009 +0000
| 
|     call ldconfig on make install (for libshogun*) and make get_name function in io non virtual
| 
| M	src/Makefile.template
| M	src/libshogun/lib/io.h
|  
* commit 283c09d7790ed3ae9321a2a2ff0b3a38ec2ef5a3
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Feb 10 14:56:57 2009 +0000
| 
|     accidentally removed a function
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit 2de15ee5cdb55bbee988bd3b0c813e15a64ab08a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 10 13:38:40 2009 +0000
| 
|     remove obsolete file
| 
| D	src/octave_modular/octave.cpp
|  
* commit 2a176afa854c890f484e76ec31360b63fca0aafa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 10 06:35:40 2009 +0000
| 
|     ignore -w454
| 
| M	src/configure
|  
* commit 56e26c5278a4fcd19398db18513e02fc1f39529c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 9 17:58:42 2009 +0000
| 
|     remove cruft
| 
| D	src/octave/sg_print_functions.cpp
|  
* commit 28373884294371a503de14e8fa254e132db33c80
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Mon Feb 9 16:55:28 2009 +0000
| 
|     new functions for direct access of the precomputed content feature arrays
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.h
|  
* commit 2703c53b5f622e5a6a87d2d595b3ce88b821bbe0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 9 10:25:26 2009 +0000
| 
|     allow building without doxygen
| 
| M	src/Makefile.template
|  
* commit dfde197336d88e38ce0e105047897296f0efef74
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 9 06:35:09 2009 +0000
| 
|     update description to match new layout
| 
| M	Makefile
| M	README
| M	doc/pages/StaticRInterface.mainpage
| M	src/INSTALL
|  
* commit 684435607018e4d75e22d63723b3207f7acdac22
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 9 06:01:51 2009 +0000
| 
|     fix install source paths
| 
| M	src/.r-install.sh
|  
* commit 8555fe1cf858424ee5547662fde2a0ede6d948ec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 17:39:17 2009 +0000
| 
|     add lib path for r file compilation
| 
| M	src/Makefile.template
|  
* commit 4ec4bb36f1105963251dc42c260996dd1669919e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 17:29:35 2009 +0000
| 
|     add forgotten file
| 
| A	src/octave_modular/sg_print_functions.cpp
|  
* commit 1d837e7383a35fce6288de1742e604f7a448c24d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 17:17:08 2009 +0000
| 
|     add print functions for modular interfaces and let .so files in modular if's depend on them
| 
| M	src/.generate_link_dependencies.py
| M	src/Makefile.template
| A	src/octave/sg_print_functions.cpp
| A	src/octave_modular/octave.cpp
| A	src/python_modular/sg_print_functions.cpp
| A	src/r_modular/sg_print_functions.cpp
|  
* commit 4126da7b12dbcb6bd12c3293a0114ce35aa8bded
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 16:51:54 2009 +0000
| 
|     move r-install.sh to top level src dir and fix typo in doc for dotfeatures, add doc targets for all interfaces
| 
| A	src/.r-install.sh
| M	src/Makefile.template
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/DotFeatures.h
| D	src/r/.r-install.sh
|  
* commit 8ec33e79d23cad432df11aa324f4a25b602bdcc3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 16:04:03 2009 +0000
| 
|     fix path to examples/testsuite
| 
| M	src/Makefile.template
|  
* commit c023100e8d8b62f5a85a0d935b88aa608016fd58
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 16:01:34 2009 +0000
| 
|     rename for examples
| 
| D	examples/octave-modular/all_classifier.m
| D	examples/octave-modular/all_clustering.m
| D	examples/octave-modular/all_distance.m
| D	examples/octave-modular/all_distribution.m
| D	examples/octave-modular/all_kernels.m
| D	examples/octave-modular/all_preproc.m
| D	examples/octave-modular/all_regression.m
| D	examples/octave-modular/check.sh
| D	examples/octave-modular/libsvm.m
| D	examples/octave-modular/tools/load_matrix.m
| A	examples/octave_modular/all_classifier.m
| A	examples/octave_modular/all_clustering.m
| A	examples/octave_modular/all_distance.m
| A	examples/octave_modular/all_distribution.m
| A	examples/octave_modular/all_kernels.m
| A	examples/octave_modular/all_preproc.m
| A	examples/octave_modular/all_regression.m
| A	examples/octave_modular/check.sh
| A	examples/octave_modular/libsvm.m
| A	examples/octave_modular/tools/load_matrix.m
| D	examples/python-modular/all_classifier.py
| D	examples/python-modular/all_clustering.py
| D	examples/python-modular/all_distance.py
| D	examples/python-modular/all_distribution.py
| D	examples/python-modular/all_kernels.py
| D	examples/python-modular/all_preproc.py
| D	examples/python-modular/all_regression.py
| D	examples/python-modular/check.sh
| D	examples/python-modular/check_commwordkernel_memleak.py
| D	examples/python-modular/graphical/all_evaluation.py
| D	examples/python-modular/graphical/krr.py
| D	examples/python-modular/graphical/krr_sinc.py
| D	examples/python-modular/graphical/lda.py
| D	examples/python-modular/graphical/multiple_smvs.py
| D	examples/python-modular/graphical/svm.py
| D	examples/python-modular/graphical/svmlin.py
| D	examples/python-modular/graphical/svr_sinc.py
| D	examples/python-modular/graphical/util.py
| D	examples/python-modular/numpy_commands.py
| D	examples/python-modular/read_svmlight_format.py
| D	examples/python-modular/stringfeatures.py
| D	examples/python-modular/tools/__init__.py
| D	examples/python-modular/tools/load.py
| A	examples/python_modular/all_classifier.py
| A	examples/python_modular/all_clustering.py
| A	examples/python_modular/all_distance.py
| A	examples/python_modular/all_distribution.py
| A	examples/python_modular/all_kernels.py
| A	examples/python_modular/all_preproc.py
| A	examples/python_modular/all_regression.py
| A	examples/python_modular/check.sh
| A	examples/python_modular/check_commwordkernel_memleak.py
| A	examples/python_modular/graphical/all_evaluation.py
| A	examples/python_modular/graphical/krr.py
| A	examples/python_modular/graphical/krr_sinc.py
| A	examples/python_modular/graphical/lda.py
| A	examples/python_modular/graphical/multiple_smvs.py
| A	examples/python_modular/graphical/svm.py
| A	examples/python_modular/graphical/svmlin.py
| A	examples/python_modular/graphical/svr_sinc.py
| A	examples/python_modular/graphical/util.py
| A	examples/python_modular/numpy_commands.py
| A	examples/python_modular/read_svmlight_format.py
| A	examples/python_modular/stringfeatures.py
| A	examples/python_modular/tools/__init__.py
| A	examples/python_modular/tools/load.py
| D	examples/r-modular/all_classifier.R
| D	examples/r-modular/all_clustering.R
| D	examples/r-modular/all_distance.R
| D	examples/r-modular/all_distribution.R
| D	examples/r-modular/all_kernels.R
| D	examples/r-modular/all_preproc.R
| D	examples/r-modular/all_regression.R
| D	examples/r-modular/check.sh
| A	examples/r_modular/all_classifier.R
| A	examples/r_modular/all_clustering.R
| A	examples/r_modular/all_distance.R
| A	examples/r_modular/all_distribution.R
| A	examples/r_modular/all_kernels.R
| A	examples/r_modular/all_preproc.R
| A	examples/r_modular/all_regression.R
| A	examples/r_modular/check.sh
|  
* commit 4dd88e00dbf187883db5c3f09317de6ddf274fd0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 16:00:53 2009 +0000
| 
|     fix doxyfile and reference generation for static interfaces, rename modular interfaces to use underscore (octave _ modular)
| 
| M	doc/Doxyfile
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	src/Makefile.template
| D	testsuite/octave-modular/classifier.m
| D	testsuite/octave-modular/clustering.m
| D	testsuite/octave-modular/distance.m
| D	testsuite/octave-modular/distribution.m
| D	testsuite/octave-modular/kernel.m
| D	testsuite/octave-modular/preproc.m
| D	testsuite/octave-modular/regression.m
| D	testsuite/octave-modular/test_all.sh
| D	testsuite/octave-modular/test_one.sh
| D	testsuite/octave-modular/util/check_accuracy.m
| D	testsuite/octave-modular/util/convert_features_and_add_preproc.m
| D	testsuite/octave-modular/util/globals.m
| D	testsuite/octave-modular/util/set_distance.m
| D	testsuite/octave-modular/util/set_features.m
| D	testsuite/octave-modular/util/set_kernel.m
| D	testsuite/octave-modular/util/set_pie.m
| D	testsuite/octave-modular/util/set_pos_and_neg.m
| D	testsuite/octave-modular/util/tobool.m
| A	testsuite/octave_modular/classifier.m
| A	testsuite/octave_modular/clustering.m
| A	testsuite/octave_modular/distance.m
| A	testsuite/octave_modular/distribution.m
| A	testsuite/octave_modular/kernel.m
| A	testsuite/octave_modular/preproc.m
| A	testsuite/octave_modular/regression.m
| A	testsuite/octave_modular/test_all.sh
| A	testsuite/octave_modular/test_one.sh
| A	testsuite/octave_modular/util/check_accuracy.m
| A	testsuite/octave_modular/util/convert_features_and_add_preproc.m
| A	testsuite/octave_modular/util/globals.m
| A	testsuite/octave_modular/util/set_distance.m
| A	testsuite/octave_modular/util/set_features.m
| A	testsuite/octave_modular/util/set_kernel.m
| A	testsuite/octave_modular/util/set_pie.m
| A	testsuite/octave_modular/util/set_pos_and_neg.m
| A	testsuite/octave_modular/util/tobool.m
| D	testsuite/python-modular/classifier.py
| D	testsuite/python-modular/clustering.py
| D	testsuite/python-modular/distance.py
| D	testsuite/python-modular/distribution.py
| D	testsuite/python-modular/kernel.py
| D	testsuite/python-modular/preproc.py
| D	testsuite/python-modular/regression.py
| D	testsuite/python-modular/test_all.sh
| D	testsuite/python-modular/test_one.py
| D	testsuite/python-modular/test_svm_kernel_multiple.py
| D	testsuite/python-modular/util.py
| A	testsuite/python_modular/classifier.py
| A	testsuite/python_modular/clustering.py
| A	testsuite/python_modular/distance.py
| A	testsuite/python_modular/distribution.py
| A	testsuite/python_modular/kernel.py
| A	testsuite/python_modular/preproc.py
| A	testsuite/python_modular/regression.py
| A	testsuite/python_modular/test_all.sh
| A	testsuite/python_modular/test_one.py
| A	testsuite/python_modular/test_svm_kernel_multiple.py
| A	testsuite/python_modular/util.py
| D	testsuite/r-modular/classifier.R
| D	testsuite/r-modular/clustering.R
| D	testsuite/r-modular/distance.R
| D	testsuite/r-modular/distribution.R
| D	testsuite/r-modular/kernel.R
| D	testsuite/r-modular/preproc.R
| D	testsuite/r-modular/regression.R
| D	testsuite/r-modular/test_all.sh
| D	testsuite/r-modular/test_one.R
| D	testsuite/r-modular/test_one.sh
| D	testsuite/r-modular/util/check_accuracy.R
| D	testsuite/r-modular/util/convert_features_and_add_preproc.R
| D	testsuite/r-modular/util/get_distance.R
| D	testsuite/r-modular/util/get_features.R
| D	testsuite/r-modular/util/get_kernel.R
| D	testsuite/r-modular/util/get_pie.R
| D	testsuite/r-modular/util/get_posneg.R
| D	testsuite/r-modular/util/read_mfile.R
| D	testsuite/r-modular/util/tobool.R
| A	testsuite/r_modular/classifier.R
| A	testsuite/r_modular/clustering.R
| A	testsuite/r_modular/distance.R
| A	testsuite/r_modular/distribution.R
| A	testsuite/r_modular/kernel.R
| A	testsuite/r_modular/preproc.R
| A	testsuite/r_modular/regression.R
| A	testsuite/r_modular/test_all.sh
| A	testsuite/r_modular/test_one.R
| A	testsuite/r_modular/test_one.sh
| A	testsuite/r_modular/util/check_accuracy.R
| A	testsuite/r_modular/util/convert_features_and_add_preproc.R
| A	testsuite/r_modular/util/get_distance.R
| A	testsuite/r_modular/util/get_features.R
| A	testsuite/r_modular/util/get_kernel.R
| A	testsuite/r_modular/util/get_pie.R
| A	testsuite/r_modular/util/get_posneg.R
| A	testsuite/r_modular/util/read_mfile.R
| A	testsuite/r_modular/util/tobool.R
|  
* commit c4dbccb7507816362845bbb3a64f88bd1adf51d8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 15:35:02 2009 +0000
| 
|     add make doc, make test target for modular interfaces
| 
| M	src/Makefile
| M	src/Makefile.template
|  
* commit b6faf30efd164c81575962d0db7a8f335846fb3a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 12:22:05 2009 +0000
| 
|     fix compilation when cplex is available, check for obsolete swig versions and disable r-modular / octave-modular accordingly
| 
| M	src/configure
| M	src/libshogun/classifier/LPBoost.h
| M	src/libshogun/classifier/LPM.h
| M	src/libshogun/classifier/SubGradientLPM.h
|  
* commit 018dd3aa5440392e01635c41d95d7907c3fdcb17
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 10:31:03 2009 +0000
| 
|     improve convergence behaviour of newton q-norm mkl
| 
| M	src/libshogun/classifier/svm/SVM_light.cpp
|  
* commit e87f262b02095a981d40785c40a0651a7403c679
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 10:16:30 2009 +0000
| 
|     fix suffixes
| 
| M	src/configure
|  
* commit e8712c0ebb5d000f07a17a0706ca4d546d6af635
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 09:56:57 2009 +0000
| 
|     remove unecessary deps
| 
| M	src/Makefile.template
|  
* commit 3fadea8f7b1636d1b8cdbc6de77ae7198f455b01
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 09:52:43 2009 +0000
| 
|     remove trailing .
| 
| M	src/Makefile.template
|  
* commit f2be5d60b25a47a7973ddd846124e73b21fe8754
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 09:52:21 2009 +0000
| 
|     use -fPIC per default
| 
| M	src/configure
|  
* commit 49406d217dcbfb7131bc0a5bf5f9eeb9ce40d951
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 09:40:41 2009 +0000
| 
|     r_modular needs further deps, create lib/versionstring.h in libshogun
| 
| M	src/Makefile.template
|  
* commit 4d46200f12719e3ed69ae742cdb40bc5a4d616ad
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 08:56:52 2009 +0000
| 
|     don't check for unreachable code (for now)
| 
| M	src/configure
|  
* commit 00d7b0dcf77005b20b74ec8b76fe3996989a14d9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 08:56:16 2009 +0000
| 
|     compiles for all interfaces now
| 
| M	src/.generate_link_dependencies.py
| M	src/Makefile.template
|  
* commit 64f7a694aa5947b31d22d2421351bcb7bd32c489
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 08:03:43 2009 +0000
| 
|     rename language specific typemaps / add lang specific code to typemaps, configure and makefile for swig.
| 
| M	src/Makefile.template
| M	src/configure
| D	src/octave_modular/octave_typemaps.i
| A	src/octave_modular/swig_typemaps.i
| D	src/python_modular/python_typemaps.i
| A	src/python_modular/swig_typemaps.i
| M	src/r/r.h
| D	src/r_modular/r_typemaps.i
| A	src/r_modular/swig_typemaps.i
|  
* commit b3d3c42a648cc95257c371c8a13d43cc02540b23
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 07:42:16 2009 +0000
| 
|     fix include paths
| 
| M	src/modular/Clustering.i
| M	src/modular/Structure.i
|  
* commit 80064551c4d224985f0e577fe0f4751ae03100e4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 07:00:40 2009 +0000
| 
|     move further .i files to src/modular and adjust inclusion paths and scripts. move language specific .i files into language dirs
| 
| M	src/.generate_link_dependencies.py
| M	src/Makefile.template
| M	src/configure
| D	src/libshogun/classifier/Classifier.doxy
| D	src/libshogun/classifier/svm/GMNPSVM.i
| D	src/libshogun/classifier/svm/GNPPSVM.i
| D	src/libshogun/classifier/svm/GPBTSVM.i
| D	src/libshogun/classifier/svm/LibLinear.i
| D	src/libshogun/classifier/svm/LibSVM.i
| D	src/libshogun/classifier/svm/LibSVMMultiClass.i
| D	src/libshogun/classifier/svm/LibSVMOneClass.i
| D	src/libshogun/classifier/svm/MPDSVM.i
| D	src/libshogun/classifier/svm/MultiClassSVM.i
| D	src/libshogun/classifier/svm/SVM.i
| D	src/libshogun/classifier/svm/SVMLin.i
| D	src/libshogun/classifier/svm/SVMOcas.i
| D	src/libshogun/classifier/svm/SVMSGD.i
| D	src/libshogun/classifier/svm/SVM_light.i
| D	src/libshogun/classifier/svm/SubGradientSVM.i
| D	src/libshogun/classifier/svm/WDSVMOcas.i
| D	src/libshogun/clustering/Clustering.doxy
| D	src/libshogun/distance/Distance.doxy
| D	src/libshogun/distributions/Distribution.doxy
| D	src/libshogun/distributions/histogram/Histogram.i
| D	src/libshogun/distributions/hmm/GHMM.i
| D	src/libshogun/distributions/hmm/HMM.i
| D	src/libshogun/distributions/hmm/LinearHMM.i
| D	src/libshogun/evaluation/Evaluation.doxy
| D	src/libshogun/features/Features.doxy
| D	src/libshogun/kernel/Kernel.doxy
| D	src/libshogun/lib/Library.doxy
| D	src/libshogun/preproc/PreProc.doxy
| D	src/libshogun/regression/Regression.doxy
| D	src/libshogun/regression/svr/LibSVR.i
| D	src/libshogun/regression/svr/SVR_light.i
| D	src/libshogun/structure/Structure.doxy
| M	src/modular/AUCKernel.i
| M	src/modular/Alphabet.i
| M	src/modular/Array.i
| M	src/modular/Array2.i
| M	src/modular/Array3.i
| M	src/modular/AvgDiagKernelNormalizer.i
| M	src/modular/ByteFeatures.i
| M	src/modular/Cache.i
| M	src/modular/CharFeatures.i
| M	src/modular/Chi2Kernel.i
| A	src/modular/Classifier.doxy
| M	src/modular/Classifier.i
| A	src/modular/Clustering.doxy
| M	src/modular/Clustering.i
| M	src/modular/CombinedDotFeatures.i
| M	src/modular/CombinedFeatures.i
| M	src/modular/CombinedKernel.i
| M	src/modular/CommUlongStringKernel.i
| M	src/modular/CommWordStringKernel.i
| M	src/modular/ConstKernel.i
| M	src/modular/CustomKernel.i
| M	src/modular/DiagKernel.i
| M	src/modular/DiceKernelNormalizer.i
| A	src/modular/Distance.doxy
| M	src/modular/Distance.i
| M	src/modular/DistanceKernel.i
| M	src/modular/DistanceMachine.i
| A	src/modular/Distribution.doxy
| M	src/modular/Distribution.i
| M	src/modular/DotFeatures.i
| M	src/modular/DummyFeatures.i
| M	src/modular/DynProg.i
| M	src/modular/DynamicArray.i
| M	src/modular/EuclidianDistance.i
| A	src/modular/Evaluation.doxy
| M	src/modular/Evaluation.i
| M	src/modular/ExplicitSpecFeatures.i
| M	src/modular/FKFeatures.i
| A	src/modular/Features.doxy
| M	src/modular/Features.i
| M	src/modular/File.i
| M	src/modular/FixedDegreeStringKernel.i
| A	src/modular/GHMM.i
| A	src/modular/GMNPSVM.i
| A	src/modular/GNPPSVM.i
| A	src/modular/GPBTSVM.i
| M	src/modular/GaussianKernel.i
| M	src/modular/GaussianShiftKernel.i
| M	src/modular/GaussianShortRealKernel.i
| M	src/modular/GeodesicMetric.i
| A	src/modular/HMM.i
| M	src/modular/HammingWordDistance.i
| M	src/modular/Hierarchical.i
| A	src/modular/Histogram.i
| M	src/modular/HistogramWordStringKernel.i
| M	src/modular/IdentityKernelNormalizer.i
| M	src/modular/ImplicitWeightedSpecFeatures.i
| M	src/modular/IntFeatures.i
| M	src/modular/JensenMetric.i
| M	src/modular/KMeans.i
| M	src/modular/KNN.i
| M	src/modular/KRR.i
| A	src/modular/Kernel.doxy
| M	src/modular/Kernel.i
| M	src/modular/KernelMachine.i
| M	src/modular/KernelNormalizer.i
| M	src/modular/Labels.i
| A	src/modular/LibLinear.i
| A	src/modular/LibSVM.i
| A	src/modular/LibSVMMultiClass.i
| A	src/modular/LibSVMOneClass.i
| A	src/modular/LibSVR.i
| A	src/modular/Library.doxy
| M	src/modular/Library.i
| M	src/modular/LinearByteKernel.i
| M	src/modular/LinearClassifier.i
| A	src/modular/LinearHMM.i
| M	src/modular/LinearKernel.i
| M	src/modular/LinearStringKernel.i
| M	src/modular/LinearWordKernel.i
| M	src/modular/List.i
| M	src/modular/LocalAlignmentStringKernel.i
| M	src/modular/LocalityImprovedStringKernel.i
| M	src/modular/LogPlusOne.i
| A	src/modular/MPDSVM.i
| M	src/modular/ManhattanMetric.i
| M	src/modular/ManhattanWordDistance.i
| M	src/modular/MatchWordStringKernel.i
| M	src/modular/Mathematics.i
| M	src/modular/MindyGramFeatures.i
| M	src/modular/MindyGramKernel.i
| M	src/modular/MinkowskiMetric.i
| A	src/modular/MultiClassSVM.i
| M	src/modular/NormDerivativeLem3.i
| M	src/modular/NormOne.i
| M	src/modular/OligoKernel.i
| M	src/modular/PCACut.i
| M	src/modular/PerformanceMeasures.i
| M	src/modular/Plif.i
| M	src/modular/PlifArray.i
| M	src/modular/PlifBase.i
| M	src/modular/PolyKernel.i
| M	src/modular/PolyMatchStringKernel.i
| M	src/modular/PolyMatchWordStringKernel.i
| A	src/modular/PreProc.doxy
| M	src/modular/PreProc.i
| M	src/modular/PruneVarSubMean.i
| M	src/modular/PyramidChi2.i
| M	src/modular/RealDistance.i
| M	src/modular/RealFeatures.i
| M	src/modular/RealFileFeatures.i
| A	src/modular/Regression.doxy
| M	src/modular/Regression.i
| A	src/modular/SVM.i
| A	src/modular/SVMLin.i
| A	src/modular/SVMOcas.i
| A	src/modular/SVMSGD.i
| A	src/modular/SVM_light.i
| A	src/modular/SVR_light.i
| M	src/modular/SalzbergWordStringKernel.i
| M	src/modular/ShogunException.i
| M	src/modular/ShortFeatures.i
| M	src/modular/ShortRealFeatures.i
| M	src/modular/SigmoidKernel.i
| M	src/modular/Signal.i
| M	src/modular/SimpleDistance.i
| M	src/modular/SimpleFeatures.i
| M	src/modular/SimpleFile.i
| M	src/modular/SimpleKernel.i
| M	src/modular/SimpleLocalityImprovedStringKernel.i
| M	src/modular/SimplePreProc.i
| M	src/modular/SortUlongString.i
| M	src/modular/SortWordString.i
| M	src/modular/SparseDistance.i
| M	src/modular/SparseEuclidianDistance.i
| M	src/modular/SparseFeatures.i
| M	src/modular/SparseGaussianKernel.i
| M	src/modular/SparseKernel.i
| M	src/modular/SparseLinearKernel.i
| M	src/modular/SparsePolyKernel.i
| M	src/modular/SparsePreProc.i
| M	src/modular/SqrtDiagKernelNormalizer.i
| M	src/modular/StringDistance.i
| M	src/modular/StringFeatures.i
| M	src/modular/StringKernel.i
| M	src/modular/StringPreProc.i
| A	src/modular/Structure.doxy
| M	src/modular/Structure.i
| A	src/modular/SubGradientSVM.i
| M	src/modular/TOPFeatures.i
| M	src/modular/TanimotoDistance.i
| M	src/modular/TanimotoKernelNormalizer.i
| M	src/modular/TensorProductPairKernel.i
| M	src/modular/Time.i
| M	src/modular/Trie.i
| M	src/modular/Version.i
| M	src/modular/WDFeatures.i
| A	src/modular/WDSVMOcas.i
| M	src/modular/WeightedCommWordStringKernel.i
| M	src/modular/WeightedDegreePositionStringKernel.i
| M	src/modular/WeightedDegreeStringKernel.i
| M	src/modular/WordFeatures.i
| M	src/modular/common.i
| M	src/modular/io.i
| M	src/modular/lapack.i
| D	src/modular/octave_typemaps.i
| D	src/modular/python_typemaps.i
| D	src/modular/r_typemaps.i
| D	src/modular/swig_typemaps.i
| A	src/octave_modular/octave_typemaps.i
| A	src/python_modular/python_typemaps.i
| A	src/r_modular/r_typemaps.i
|  
* commit 11fe38baeb5f39477897c8144f3ec9e2208c5716
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 7 14:48:54 2009 +0000
| 
|     enable svmlight, get make install and make tests to work
| 
| D	src/.r-install.sh
| M	src/Makefile
| M	src/Makefile.template
| M	src/configure
| M	src/libshogun/regression/svr/SVR_light.cpp
| A	src/r/.r-install.sh
|  
* commit 85b3d3ce4fe23da0994b2a117917c103f800fe6d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 7 13:39:18 2009 +0000
| 
|     fix a misplace endif, quieten output
| 
| M	src/Makefile
| M	src/Makefile.template
|  
* commit 35da2a82c5c45926252750eeefc5a09ba94c86c4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 7 13:04:05 2009 +0000
| 
|     don't fail when matlab is not found remove cruft
| 
| M	src/configure
| D	src/interfaces/Makefile
|  
* commit 77fa30abb5b10fc33531da8dd3f4dc8934c735aa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 7 12:51:25 2009 +0000
| 
|     building of libshogun{,ui} and static interfaces works now
| 
| M	src/Makefile
| A	src/Makefile.template
| A	src/cmdline/CmdLineInterface.cpp
| A	src/cmdline/CmdLineInterface.h
| A	src/cmdline/cmdline.cpp
| M	src/configure
| D	src/interfaces/cmdline/CmdLineInterface.cpp
| D	src/interfaces/cmdline/CmdLineInterface.h
| D	src/interfaces/lib/cmdline.cpp
| D	src/interfaces/lib/matlab.cpp
| D	src/interfaces/lib/matlab.h
| D	src/interfaces/lib/octave.cpp
| D	src/interfaces/lib/octave.h
| D	src/interfaces/lib/python.cpp
| D	src/interfaces/lib/python.h
| D	src/interfaces/lib/r.cpp
| D	src/interfaces/lib/r.h
| D	src/interfaces/matlab/MatlabInterface.cpp
| D	src/interfaces/matlab/MatlabInterface.h
| D	src/interfaces/modular/AUCKernel.i
| D	src/interfaces/modular/Alphabet.i
| D	src/interfaces/modular/Array.i
| D	src/interfaces/modular/Array2.i
| D	src/interfaces/modular/Array3.i
| D	src/interfaces/modular/AvgDiagKernelNormalizer.i
| D	src/interfaces/modular/BrayCurtisDistance.i
| D	src/interfaces/modular/ByteFeatures.i
| D	src/interfaces/modular/Cache.i
| D	src/interfaces/modular/CanberraMetric.i
| D	src/interfaces/modular/CanberraWordDistance.i
| D	src/interfaces/modular/CharFeatures.i
| D	src/interfaces/modular/ChebyshewMetric.i
| D	src/interfaces/modular/Chi2Kernel.i
| D	src/interfaces/modular/ChiSquareDistance.i
| D	src/interfaces/modular/Classifier.i
| D	src/interfaces/modular/Clustering.i
| D	src/interfaces/modular/CombinedDotFeatures.i
| D	src/interfaces/modular/CombinedFeatures.i
| D	src/interfaces/modular/CombinedKernel.i
| D	src/interfaces/modular/CommUlongStringKernel.i
| D	src/interfaces/modular/CommWordStringKernel.i
| D	src/interfaces/modular/ConstKernel.i
| D	src/interfaces/modular/CosineDistance.i
| D	src/interfaces/modular/CustomKernel.i
| D	src/interfaces/modular/DiagKernel.i
| D	src/interfaces/modular/DiceKernelNormalizer.i
| D	src/interfaces/modular/Distance.i
| D	src/interfaces/modular/DistanceKernel.i
| D	src/interfaces/modular/DistanceMachine.i
| D	src/interfaces/modular/Distribution.i
| D	src/interfaces/modular/DotFeatures.i
| D	src/interfaces/modular/DummyFeatures.i
| D	src/interfaces/modular/DynProg.i
| D	src/interfaces/modular/DynamicArray.i
| D	src/interfaces/modular/EuclidianDistance.i
| D	src/interfaces/modular/Evaluation.i
| D	src/interfaces/modular/ExplicitSpecFeatures.i
| D	src/interfaces/modular/FKFeatures.i
| D	src/interfaces/modular/Features.i
| D	src/interfaces/modular/File.i
| D	src/interfaces/modular/FixedDegreeStringKernel.i
| D	src/interfaces/modular/GaussianKernel.i
| D	src/interfaces/modular/GaussianShiftKernel.i
| D	src/interfaces/modular/GaussianShortRealKernel.i
| D	src/interfaces/modular/GeodesicMetric.i
| D	src/interfaces/modular/HammingWordDistance.i
| D	src/interfaces/modular/Hierarchical.i
| D	src/interfaces/modular/HistogramWordStringKernel.i
| D	src/interfaces/modular/IdentityKernelNormalizer.i
| D	src/interfaces/modular/ImplicitWeightedSpecFeatures.i
| D	src/interfaces/modular/IntFeatures.i
| D	src/interfaces/modular/JensenMetric.i
| D	src/interfaces/modular/KMeans.i
| D	src/interfaces/modular/KNN.i
| D	src/interfaces/modular/KRR.i
| D	src/interfaces/modular/Kernel.i
| D	src/interfaces/modular/KernelMachine.i
| D	src/interfaces/modular/KernelNormalizer.i
| D	src/interfaces/modular/KernelPerceptron.i
| D	src/interfaces/modular/LDA.i
| D	src/interfaces/modular/LPBoost.i
| D	src/interfaces/modular/LPM.i
| D	src/interfaces/modular/Labels.i
| D	src/interfaces/modular/Library.i
| D	src/interfaces/modular/LinearByteKernel.i
| D	src/interfaces/modular/LinearClassifier.i
| D	src/interfaces/modular/LinearKernel.i
| D	src/interfaces/modular/LinearStringKernel.i
| D	src/interfaces/modular/LinearWordKernel.i
| D	src/interfaces/modular/List.i
| D	src/interfaces/modular/LocalAlignmentStringKernel.i
| D	src/interfaces/modular/LocalityImprovedStringKernel.i
| D	src/interfaces/modular/LogPlusOne.i
| D	src/interfaces/modular/ManhattanMetric.i
| D	src/interfaces/modular/ManhattanWordDistance.i
| D	src/interfaces/modular/MatchWordStringKernel.i
| D	src/interfaces/modular/Mathematics.i
| D	src/interfaces/modular/MindyGramFeatures.i
| D	src/interfaces/modular/MindyGramKernel.i
| D	src/interfaces/modular/MinkowskiMetric.i
| D	src/interfaces/modular/NormDerivativeLem3.i
| D	src/interfaces/modular/NormOne.i
| D	src/interfaces/modular/OligoKernel.i
| D	src/interfaces/modular/PCACut.i
| D	src/interfaces/modular/Parallel.i
| D	src/interfaces/modular/Perceptron.i
| D	src/interfaces/modular/PerformanceMeasures.i
| D	src/interfaces/modular/Plif.i
| D	src/interfaces/modular/PlifArray.i
| D	src/interfaces/modular/PlifBase.i
| D	src/interfaces/modular/PluginEstimate.i
| D	src/interfaces/modular/PolyKernel.i
| D	src/interfaces/modular/PolyMatchStringKernel.i
| D	src/interfaces/modular/PolyMatchWordStringKernel.i
| D	src/interfaces/modular/PreProc.i
| D	src/interfaces/modular/PruneVarSubMean.i
| D	src/interfaces/modular/PyramidChi2.i
| D	src/interfaces/modular/RealDistance.i
| D	src/interfaces/modular/RealFeatures.i
| D	src/interfaces/modular/RealFileFeatures.i
| D	src/interfaces/modular/Regression.i
| D	src/interfaces/modular/SGObject.i
| D	src/interfaces/modular/SalzbergWordStringKernel.i
| D	src/interfaces/modular/ShogunException.i
| D	src/interfaces/modular/ShortFeatures.i
| D	src/interfaces/modular/ShortRealFeatures.i
| D	src/interfaces/modular/SigmoidKernel.i
| D	src/interfaces/modular/Signal.i
| D	src/interfaces/modular/SimpleDistance.i
| D	src/interfaces/modular/SimpleFeatures.i
| D	src/interfaces/modular/SimpleFile.i
| D	src/interfaces/modular/SimpleKernel.i
| D	src/interfaces/modular/SimpleLocalityImprovedStringKernel.i
| D	src/interfaces/modular/SimplePreProc.i
| D	src/interfaces/modular/SortUlongString.i
| D	src/interfaces/modular/SortWordString.i
| D	src/interfaces/modular/SparseDistance.i
| D	src/interfaces/modular/SparseEuclidianDistance.i
| D	src/interfaces/modular/SparseFeatures.i
| D	src/interfaces/modular/SparseGaussianKernel.i
| D	src/interfaces/modular/SparseKernel.i
| D	src/interfaces/modular/SparseLinearKernel.i
| D	src/interfaces/modular/SparsePolyKernel.i
| D	src/interfaces/modular/SparsePreProc.i
| D	src/interfaces/modular/SqrtDiagKernelNormalizer.i
| D	src/interfaces/modular/StringDistance.i
| D	src/interfaces/modular/StringFeatures.i
| D	src/interfaces/modular/StringKernel.i
| D	src/interfaces/modular/StringPreProc.i
| D	src/interfaces/modular/Structure.i
| D	src/interfaces/modular/SubGradientLPM.i
| D	src/interfaces/modular/TOPFeatures.i
| D	src/interfaces/modular/TanimotoDistance.i
| D	src/interfaces/modular/TanimotoKernelNormalizer.i
| D	src/interfaces/modular/TensorProductPairKernel.i
| D	src/interfaces/modular/Time.i
| D	src/interfaces/modular/Trie.i
| D	src/interfaces/modular/Version.i
| D	src/interfaces/modular/WDFeatures.i
| D	src/interfaces/modular/WeightedCommWordStringKernel.i
| D	src/interfaces/modular/WeightedDegreePositionStringKernel.i
| D	src/interfaces/modular/WeightedDegreeStringKernel.i
| D	src/interfaces/modular/WordFeatures.i
| D	src/interfaces/modular/common.i
| D	src/interfaces/modular/io.i
| D	src/interfaces/modular/lapack.i
| D	src/interfaces/modular/octave_typemaps.i
| D	src/interfaces/modular/python_typemaps.i
| D	src/interfaces/modular/r_typemaps.i
| D	src/interfaces/modular/swig_typemaps.i
| D	src/interfaces/octave/OctaveInterface.cpp
| D	src/interfaces/octave/OctaveInterface.h
| D	src/interfaces/python/PythonInterface.cpp
| D	src/interfaces/python/PythonInterface.h
| D	src/interfaces/r/RInterface.cpp
| D	src/interfaces/r/RInterface.h
| D	src/libshogun/Makefile
| M	src/libshogun/lib/Signal.h
| D	src/libshogunui/Makefile
| A	src/matlab/MatlabInterface.cpp
| A	src/matlab/MatlabInterface.h
| A	src/matlab/matlab.cpp
| A	src/matlab/matlab.h
| A	src/modular/AUCKernel.i
| A	src/modular/Alphabet.i
| A	src/modular/Array.i
| A	src/modular/Array2.i
| A	src/modular/Array3.i
| A	src/modular/AvgDiagKernelNormalizer.i
| A	src/modular/BrayCurtisDistance.i
| A	src/modular/ByteFeatures.i
| A	src/modular/Cache.i
| A	src/modular/CanberraMetric.i
| A	src/modular/CanberraWordDistance.i
| A	src/modular/CharFeatures.i
| A	src/modular/ChebyshewMetric.i
| A	src/modular/Chi2Kernel.i
| A	src/modular/ChiSquareDistance.i
| A	src/modular/Classifier.i
| A	src/modular/Clustering.i
| A	src/modular/CombinedDotFeatures.i
| A	src/modular/CombinedFeatures.i
| A	src/modular/CombinedKernel.i
| A	src/modular/CommUlongStringKernel.i
| A	src/modular/CommWordStringKernel.i
| A	src/modular/ConstKernel.i
| A	src/modular/CosineDistance.i
| A	src/modular/CustomKernel.i
| A	src/modular/DiagKernel.i
| A	src/modular/DiceKernelNormalizer.i
| A	src/modular/Distance.i
| A	src/modular/DistanceKernel.i
| A	src/modular/DistanceMachine.i
| A	src/modular/Distribution.i
| A	src/modular/DotFeatures.i
| A	src/modular/DummyFeatures.i
| A	src/modular/DynProg.i
| A	src/modular/DynamicArray.i
| A	src/modular/EuclidianDistance.i
| A	src/modular/Evaluation.i
| A	src/modular/ExplicitSpecFeatures.i
| A	src/modular/FKFeatures.i
| A	src/modular/Features.i
| A	src/modular/File.i
| A	src/modular/FixedDegreeStringKernel.i
| A	src/modular/GaussianKernel.i
| A	src/modular/GaussianShiftKernel.i
| A	src/modular/GaussianShortRealKernel.i
| A	src/modular/GeodesicMetric.i
| A	src/modular/HammingWordDistance.i
| A	src/modular/Hierarchical.i
| A	src/modular/HistogramWordStringKernel.i
| A	src/modular/IdentityKernelNormalizer.i
| A	src/modular/ImplicitWeightedSpecFeatures.i
| A	src/modular/IntFeatures.i
| A	src/modular/JensenMetric.i
| A	src/modular/KMeans.i
| A	src/modular/KNN.i
| A	src/modular/KRR.i
| A	src/modular/Kernel.i
| A	src/modular/KernelMachine.i
| A	src/modular/KernelNormalizer.i
| A	src/modular/KernelPerceptron.i
| A	src/modular/LDA.i
| A	src/modular/LPBoost.i
| A	src/modular/LPM.i
| A	src/modular/Labels.i
| A	src/modular/Library.i
| A	src/modular/LinearByteKernel.i
| A	src/modular/LinearClassifier.i
| A	src/modular/LinearKernel.i
| A	src/modular/LinearStringKernel.i
| A	src/modular/LinearWordKernel.i
| A	src/modular/List.i
| A	src/modular/LocalAlignmentStringKernel.i
| A	src/modular/LocalityImprovedStringKernel.i
| A	src/modular/LogPlusOne.i
| A	src/modular/ManhattanMetric.i
| A	src/modular/ManhattanWordDistance.i
| A	src/modular/MatchWordStringKernel.i
| A	src/modular/Mathematics.i
| A	src/modular/MindyGramFeatures.i
| A	src/modular/MindyGramKernel.i
| A	src/modular/MinkowskiMetric.i
| A	src/modular/NormDerivativeLem3.i
| A	src/modular/NormOne.i
| A	src/modular/OligoKernel.i
| A	src/modular/PCACut.i
| A	src/modular/Parallel.i
| A	src/modular/Perceptron.i
| A	src/modular/PerformanceMeasures.i
| A	src/modular/Plif.i
| A	src/modular/PlifArray.i
| A	src/modular/PlifBase.i
| A	src/modular/PluginEstimate.i
| A	src/modular/PolyKernel.i
| A	src/modular/PolyMatchStringKernel.i
| A	src/modular/PolyMatchWordStringKernel.i
| A	src/modular/PreProc.i
| A	src/modular/PruneVarSubMean.i
| A	src/modular/PyramidChi2.i
| A	src/modular/RealDistance.i
| A	src/modular/RealFeatures.i
| A	src/modular/RealFileFeatures.i
| A	src/modular/Regression.i
| A	src/modular/SGObject.i
| A	src/modular/SalzbergWordStringKernel.i
| A	src/modular/ShogunException.i
| A	src/modular/ShortFeatures.i
| A	src/modular/ShortRealFeatures.i
| A	src/modular/SigmoidKernel.i
| A	src/modular/Signal.i
| A	src/modular/SimpleDistance.i
| A	src/modular/SimpleFeatures.i
| A	src/modular/SimpleFile.i
| A	src/modular/SimpleKernel.i
| A	src/modular/SimpleLocalityImprovedStringKernel.i
| A	src/modular/SimplePreProc.i
| A	src/modular/SortUlongString.i
| A	src/modular/SortWordString.i
| A	src/modular/SparseDistance.i
| A	src/modular/SparseEuclidianDistance.i
| A	src/modular/SparseFeatures.i
| A	src/modular/SparseGaussianKernel.i
| A	src/modular/SparseKernel.i
| A	src/modular/SparseLinearKernel.i
| A	src/modular/SparsePolyKernel.i
| A	src/modular/SparsePreProc.i
| A	src/modular/SqrtDiagKernelNormalizer.i
| A	src/modular/StringDistance.i
| A	src/modular/StringFeatures.i
| A	src/modular/StringKernel.i
| A	src/modular/StringPreProc.i
| A	src/modular/Structure.i
| A	src/modular/SubGradientLPM.i
| A	src/modular/TOPFeatures.i
| A	src/modular/TanimotoDistance.i
| A	src/modular/TanimotoKernelNormalizer.i
| A	src/modular/TensorProductPairKernel.i
| A	src/modular/Time.i
| A	src/modular/Trie.i
| A	src/modular/Version.i
| A	src/modular/WDFeatures.i
| A	src/modular/WeightedCommWordStringKernel.i
| A	src/modular/WeightedDegreePositionStringKernel.i
| A	src/modular/WeightedDegreeStringKernel.i
| A	src/modular/WordFeatures.i
| A	src/modular/common.i
| A	src/modular/io.i
| A	src/modular/lapack.i
| A	src/modular/octave_typemaps.i
| A	src/modular/python_typemaps.i
| A	src/modular/r_typemaps.i
| A	src/modular/swig_typemaps.i
| A	src/octave/OctaveInterface.cpp
| A	src/octave/OctaveInterface.h
| A	src/octave/octave.cpp
| A	src/octave/octave.h
| A	src/python/PythonInterface.cpp
| A	src/python/PythonInterface.h
| A	src/python/python.cpp
| A	src/python/python.h
| A	src/r/RInterface.cpp
| A	src/r/RInterface.h
| A	src/r/r.cpp
| A	src/r/r.h
|  
* commit 913e6376cc96405a4532f52c54f8a6b3c9135286
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 5 21:48:39 2009 +0000
| 
|     further restructuring
| 
| M	src/Makefile
| M	src/configure
| M	src/interfaces/Makefile
| A	src/interfaces/cmdline/CmdLineInterface.cpp
| A	src/interfaces/cmdline/CmdLineInterface.h
| M	src/interfaces/lib/cmdline.cpp
| M	src/interfaces/lib/matlab.cpp
| M	src/interfaces/lib/matlab.h
| M	src/interfaces/lib/octave.cpp
| M	src/interfaces/lib/octave.h
| M	src/interfaces/lib/python.cpp
| M	src/interfaces/lib/r.cpp
| M	src/interfaces/lib/r.h
| A	src/interfaces/matlab/MatlabInterface.cpp
| A	src/interfaces/matlab/MatlabInterface.h
| A	src/interfaces/octave/OctaveInterface.cpp
| A	src/interfaces/octave/OctaveInterface.h
| A	src/interfaces/python/PythonInterface.cpp
| A	src/interfaces/python/PythonInterface.h
| A	src/interfaces/r/RInterface.cpp
| A	src/interfaces/r/RInterface.h
| D	src/interfaces/static/CmdLineInterface.cpp
| D	src/interfaces/static/CmdLineInterface.h
| D	src/interfaces/static/MatlabInterface.cpp
| D	src/interfaces/static/MatlabInterface.h
| D	src/interfaces/static/OctaveInterface.cpp
| D	src/interfaces/static/OctaveInterface.h
| D	src/interfaces/static/PythonInterface.cpp
| D	src/interfaces/static/PythonInterface.h
| D	src/interfaces/static/RInterface.cpp
| D	src/interfaces/static/RInterface.h
| M	src/libshogunui/Makefile
|  
* commit 97715266e1cfea431eff0512d680b4143d6716e8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 5 09:54:32 2009 +0000
| 
|     more progress on new configure/make system
| 
| M	src/Makefile
| M	src/NEWS
| M	src/configure
| A	src/interfaces/Makefile
| M	src/interfaces/static/CmdLineInterface.cpp
| M	src/interfaces/static/CmdLineInterface.h
| D	src/interfaces/static/SGInterface.cpp
| D	src/interfaces/static/SGInterface.h
| D	src/interfaces/static/SyntaxHighLight.h
| M	src/libshogun/Makefile
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIClassifier.h
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/GUIDistance.cpp
| M	src/libshogunui/GUIDistance.h
| M	src/libshogunui/GUIFeatures.cpp
| M	src/libshogunui/GUIFeatures.h
| M	src/libshogunui/GUIHMM.cpp
| M	src/libshogunui/GUIHMM.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/GUIKernel.h
| M	src/libshogunui/GUILabels.cpp
| M	src/libshogunui/GUILabels.h
| M	src/libshogunui/GUIMath.cpp
| M	src/libshogunui/GUIMath.h
| M	src/libshogunui/GUIPluginEstimate.cpp
| M	src/libshogunui/GUIPluginEstimate.h
| M	src/libshogunui/GUIPreProc.cpp
| M	src/libshogunui/GUIPreProc.h
| M	src/libshogunui/GUIStructure.cpp
| M	src/libshogunui/GUIStructure.h
| M	src/libshogunui/GUITime.cpp
| M	src/libshogunui/GUITime.h
| A	src/libshogunui/Makefile
| A	src/libshogunui/SGInterface.cpp
| A	src/libshogunui/SGInterface.h
| A	src/libshogunui/SyntaxHighLight.h
|  
* commit 78e3d592d8f0e9366d4ae1386ca9c3c3a13e0869
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 4 22:38:58 2009 +0000
| 
|     further improve configure
| 
| M	src/configure
|  
* commit b5f7c4dfbca65b3c474b7f76d6ce0ad01c8f8265
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 4 14:48:25 2009 +0000
| 
|     move libshogun/lib/matlab.{cpp,h} etc to interfaces/lib
| 
| M	src/Makefile
| M	src/NEWS
| M	src/configure
| A	src/interfaces/lib/cmdline.cpp
| A	src/interfaces/lib/matlab.cpp
| A	src/interfaces/lib/matlab.h
| A	src/interfaces/lib/octave.cpp
| A	src/interfaces/lib/octave.h
| A	src/interfaces/lib/python.cpp
| A	src/interfaces/lib/python.h
| A	src/interfaces/lib/r.cpp
| A	src/interfaces/lib/r.h
| A	src/libshogun/Makefile
| M	src/libshogun/base/Version.h
| M	src/libshogun/lib/Cplex.h
| M	src/libshogun/lib/Signal.cpp
| D	src/libshogun/lib/cmdline.cpp
| M	src/libshogun/lib/io.cpp
| D	src/libshogun/lib/matlab.cpp
| D	src/libshogun/lib/matlab.h
| D	src/libshogun/lib/octave.cpp
| D	src/libshogun/lib/octave.h
| D	src/libshogun/lib/python.cpp
| D	src/libshogun/lib/python.h
| D	src/libshogun/lib/r.cpp
| D	src/libshogun/lib/r.h
| M	src/libshogun/structure/Plif.h
|  
* commit 77e7361091336a8839538258d500bbb92b8c6c1e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 1 22:56:24 2009 +0000
| 
|     remove obsolete dirs
|  
* commit 9ce4783231b50821c94e94e25c69a2dbb39ccd6c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 1 22:55:40 2009 +0000
| 
|     move things into static interfaces
| 
| D	src/guilib/GUIClassifier.cpp
| D	src/guilib/GUIClassifier.h
| D	src/guilib/GUICommands.h
| D	src/guilib/GUIDistance.cpp
| D	src/guilib/GUIDistance.h
| D	src/guilib/GUIFeatures.cpp
| D	src/guilib/GUIFeatures.h
| D	src/guilib/GUIHMM.cpp
| D	src/guilib/GUIHMM.h
| D	src/guilib/GUIKernel.cpp
| D	src/guilib/GUIKernel.h
| D	src/guilib/GUILabels.cpp
| D	src/guilib/GUILabels.h
| D	src/guilib/GUIMath.cpp
| D	src/guilib/GUIMath.h
| D	src/guilib/GUIPluginEstimate.cpp
| D	src/guilib/GUIPluginEstimate.h
| D	src/guilib/GUIPreProc.cpp
| D	src/guilib/GUIPreProc.h
| D	src/guilib/GUIStructure.cpp
| D	src/guilib/GUIStructure.h
| D	src/guilib/GUITime.cpp
| D	src/guilib/GUITime.h
| D	src/interface/CmdLineInterface.cpp
| D	src/interface/CmdLineInterface.h
| D	src/interface/MatlabInterface.cpp
| D	src/interface/MatlabInterface.h
| D	src/interface/OctaveInterface.cpp
| D	src/interface/OctaveInterface.h
| D	src/interface/PythonInterface.cpp
| D	src/interface/PythonInterface.h
| D	src/interface/RInterface.cpp
| D	src/interface/RInterface.h
| D	src/interface/SGInterface.cpp
| D	src/interface/SGInterface.h
| D	src/interface/SyntaxHighLight.h
| A	src/interfaces/static/CmdLineInterface.cpp
| A	src/interfaces/static/CmdLineInterface.h
| A	src/interfaces/static/MatlabInterface.cpp
| A	src/interfaces/static/MatlabInterface.h
| A	src/interfaces/static/OctaveInterface.cpp
| A	src/interfaces/static/OctaveInterface.h
| A	src/interfaces/static/PythonInterface.cpp
| A	src/interfaces/static/PythonInterface.h
| A	src/interfaces/static/RInterface.cpp
| A	src/interfaces/static/RInterface.h
| A	src/interfaces/static/SGInterface.cpp
| A	src/interfaces/static/SGInterface.h
| A	src/interfaces/static/SyntaxHighLight.h
| A	src/libshogunui/GUIClassifier.cpp
| A	src/libshogunui/GUIClassifier.h
| A	src/libshogunui/GUICommands.h
| A	src/libshogunui/GUIDistance.cpp
| A	src/libshogunui/GUIDistance.h
| A	src/libshogunui/GUIFeatures.cpp
| A	src/libshogunui/GUIFeatures.h
| A	src/libshogunui/GUIHMM.cpp
| A	src/libshogunui/GUIHMM.h
| A	src/libshogunui/GUIKernel.cpp
| A	src/libshogunui/GUIKernel.h
| A	src/libshogunui/GUILabels.cpp
| A	src/libshogunui/GUILabels.h
| A	src/libshogunui/GUIMath.cpp
| A	src/libshogunui/GUIMath.h
| A	src/libshogunui/GUIPluginEstimate.cpp
| A	src/libshogunui/GUIPluginEstimate.h
| A	src/libshogunui/GUIPreProc.cpp
| A	src/libshogunui/GUIPreProc.h
| A	src/libshogunui/GUIStructure.cpp
| A	src/libshogunui/GUIStructure.h
| A	src/libshogunui/GUITime.cpp
| A	src/libshogunui/GUITime.h
|  
* commit eb73bab5d0b6d5a3e7c59f600ec76c61ae350c46
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 1 22:53:15 2009 +0000
| 
|     move things into libshogun
| 
| D	src/base/Parallel.cpp
| D	src/base/Parallel.h
| D	src/base/SGObject.cpp
| D	src/base/SGObject.h
| D	src/base/Version.cpp
| D	src/base/Version.h
| D	src/classifier/Classifier.cpp
| D	src/classifier/Classifier.doxy
| D	src/classifier/Classifier.h
| D	src/classifier/KNN.cpp
| D	src/classifier/KNN.h
| D	src/classifier/KernelPerceptron.cpp
| D	src/classifier/KernelPerceptron.h
| D	src/classifier/LDA.cpp
| D	src/classifier/LDA.h
| D	src/classifier/LPBoost.cpp
| D	src/classifier/LPBoost.h
| D	src/classifier/LPM.cpp
| D	src/classifier/LPM.h
| D	src/classifier/LinearClassifier.cpp
| D	src/classifier/LinearClassifier.h
| D	src/classifier/Perceptron.cpp
| D	src/classifier/Perceptron.h
| D	src/classifier/PluginEstimate.cpp
| D	src/classifier/PluginEstimate.h
| D	src/classifier/SubGradientLPM.cpp
| D	src/classifier/SubGradientLPM.h
| D	src/classifier/__init__.py
| D	src/classifier/svm/CPLEXSVM.cpp
| D	src/classifier/svm/CPLEXSVM.h
| D	src/classifier/svm/GMNPSVM.cpp
| D	src/classifier/svm/GMNPSVM.h
| D	src/classifier/svm/GMNPSVM.i
| D	src/classifier/svm/GNPPSVM.cpp
| D	src/classifier/svm/GNPPSVM.h
| D	src/classifier/svm/GNPPSVM.i
| D	src/classifier/svm/GPBTSVM.cpp
| D	src/classifier/svm/GPBTSVM.h
| D	src/classifier/svm/GPBTSVM.i
| D	src/classifier/svm/LibLinear.cpp
| D	src/classifier/svm/LibLinear.h
| D	src/classifier/svm/LibLinear.i
| D	src/classifier/svm/LibSVM.cpp
| D	src/classifier/svm/LibSVM.h
| D	src/classifier/svm/LibSVM.i
| D	src/classifier/svm/LibSVMMultiClass.cpp
| D	src/classifier/svm/LibSVMMultiClass.h
| D	src/classifier/svm/LibSVMMultiClass.i
| D	src/classifier/svm/LibSVMOneClass.cpp
| D	src/classifier/svm/LibSVMOneClass.h
| D	src/classifier/svm/LibSVMOneClass.i
| D	src/classifier/svm/MPDSVM.cpp
| D	src/classifier/svm/MPDSVM.h
| D	src/classifier/svm/MPDSVM.i
| D	src/classifier/svm/MultiClassSVM.cpp
| D	src/classifier/svm/MultiClassSVM.h
| D	src/classifier/svm/MultiClassSVM.i
| D	src/classifier/svm/SVM.cpp
| D	src/classifier/svm/SVM.h
| D	src/classifier/svm/SVM.i
| D	src/classifier/svm/SVMLin.cpp
| D	src/classifier/svm/SVMLin.h
| D	src/classifier/svm/SVMLin.i
| D	src/classifier/svm/SVMOcas.cpp
| D	src/classifier/svm/SVMOcas.h
| D	src/classifier/svm/SVMOcas.i
| D	src/classifier/svm/SVMSGD.cpp
| D	src/classifier/svm/SVMSGD.h
| D	src/classifier/svm/SVMSGD.i
| D	src/classifier/svm/SVM_libsvm.cpp
| D	src/classifier/svm/SVM_libsvm.h
| D	src/classifier/svm/SVM_light.cpp
| D	src/classifier/svm/SVM_light.h
| D	src/classifier/svm/SVM_light.i
| D	src/classifier/svm/SVM_linear.cpp
| D	src/classifier/svm/SVM_linear.h
| D	src/classifier/svm/SubGradientSVM.cpp
| D	src/classifier/svm/SubGradientSVM.h
| D	src/classifier/svm/SubGradientSVM.i
| D	src/classifier/svm/Tron.cpp
| D	src/classifier/svm/Tron.h
| D	src/classifier/svm/WDSVMOcas.cpp
| D	src/classifier/svm/WDSVMOcas.h
| D	src/classifier/svm/WDSVMOcas.i
| D	src/classifier/svm/__init__.py
| D	src/classifier/svm/gmnplib.cpp
| D	src/classifier/svm/gmnplib.h
| D	src/classifier/svm/gmnpmkl.cpp
| D	src/classifier/svm/gmnpmkl.h
| D	src/classifier/svm/gnpplib.cpp
| D	src/classifier/svm/gnpplib.h
| D	src/classifier/svm/gpdt.cpp
| D	src/classifier/svm/gpdt.h
| D	src/classifier/svm/gpdtsolve.cpp
| D	src/classifier/svm/gpdtsolve.h
| D	src/classifier/svm/gpm.cpp
| D	src/classifier/svm/gpm.h
| D	src/classifier/svm/libocas.cpp
| D	src/classifier/svm/libocas.h
| D	src/classifier/svm/libocas_common.h
| D	src/classifier/svm/pr_loqo.cpp
| D	src/classifier/svm/pr_loqo.h
| D	src/classifier/svm/qpbsvmlib.cpp
| D	src/classifier/svm/qpbsvmlib.h
| D	src/classifier/svm/qpssvmlib.cpp
| D	src/classifier/svm/qpssvmlib.h
| D	src/classifier/svm/ssl.cpp
| D	src/classifier/svm/ssl.h
| D	src/clustering/Clustering.doxy
| D	src/clustering/Hierarchical.cpp
| D	src/clustering/Hierarchical.h
| D	src/clustering/KMeans.cpp
| D	src/clustering/KMeans.h
| D	src/distance/BrayCurtisDistance.cpp
| D	src/distance/BrayCurtisDistance.h
| D	src/distance/CanberraMetric.cpp
| D	src/distance/CanberraMetric.h
| D	src/distance/CanberraWordDistance.cpp
| D	src/distance/CanberraWordDistance.h
| D	src/distance/ChebyshewMetric.cpp
| D	src/distance/ChebyshewMetric.h
| D	src/distance/ChiSquareDistance.cpp
| D	src/distance/ChiSquareDistance.h
| D	src/distance/CosineDistance.cpp
| D	src/distance/CosineDistance.h
| D	src/distance/Distance.cpp
| D	src/distance/Distance.doxy
| D	src/distance/Distance.h
| D	src/distance/DistanceMachine.cpp
| D	src/distance/DistanceMachine.h
| D	src/distance/EuclidianDistance.cpp
| D	src/distance/EuclidianDistance.h
| D	src/distance/GeodesicMetric.cpp
| D	src/distance/GeodesicMetric.h
| D	src/distance/HammingWordDistance.cpp
| D	src/distance/HammingWordDistance.h
| D	src/distance/JensenMetric.cpp
| D	src/distance/JensenMetric.h
| D	src/distance/ManhattanMetric.cpp
| D	src/distance/ManhattanMetric.h
| D	src/distance/ManhattanWordDistance.cpp
| D	src/distance/ManhattanWordDistance.h
| D	src/distance/MinkowskiMetric.cpp
| D	src/distance/MinkowskiMetric.h
| D	src/distance/RealDistance.h
| D	src/distance/SimpleDistance.h
| D	src/distance/SparseDistance.h
| D	src/distance/SparseEuclidianDistance.cpp
| D	src/distance/SparseEuclidianDistance.h
| D	src/distance/StringDistance.h
| D	src/distance/TanimotoDistance.cpp
| D	src/distance/TanimotoDistance.h
| D	src/distributions/Distribution.cpp
| D	src/distributions/Distribution.doxy
| D	src/distributions/Distribution.h
| D	src/distributions/histogram/Histogram.cpp
| D	src/distributions/histogram/Histogram.h
| D	src/distributions/histogram/Histogram.i
| D	src/distributions/hmm/GHMM.cpp
| D	src/distributions/hmm/GHMM.h
| D	src/distributions/hmm/GHMM.i
| D	src/distributions/hmm/HMM.cpp
| D	src/distributions/hmm/HMM.h
| D	src/distributions/hmm/HMM.i
| D	src/distributions/hmm/LinearHMM.cpp
| D	src/distributions/hmm/LinearHMM.h
| D	src/distributions/hmm/LinearHMM.i
| D	src/evaluation/Evaluation.doxy
| D	src/evaluation/PerformanceMeasures.cpp
| D	src/evaluation/PerformanceMeasures.h
| D	src/features/Alphabet.cpp
| D	src/features/Alphabet.h
| D	src/features/ByteFeatures.cpp
| D	src/features/ByteFeatures.h
| D	src/features/CharFeatures.cpp
| D	src/features/CharFeatures.h
| D	src/features/CombinedDotFeatures.cpp
| D	src/features/CombinedDotFeatures.h
| D	src/features/CombinedFeatures.cpp
| D	src/features/CombinedFeatures.h
| D	src/features/DotFeatures.cpp
| D	src/features/DotFeatures.h
| D	src/features/DummyFeatures.h
| D	src/features/ExplicitSpecFeatures.cpp
| D	src/features/ExplicitSpecFeatures.h
| D	src/features/FKFeatures.cpp
| D	src/features/FKFeatures.h
| D	src/features/Features.cpp
| D	src/features/Features.doxy
| D	src/features/Features.h
| D	src/features/ImplicitWeightedSpecFeatures.cpp
| D	src/features/ImplicitWeightedSpecFeatures.h
| D	src/features/IntFeatures.cpp
| D	src/features/IntFeatures.h
| D	src/features/Labels.cpp
| D	src/features/Labels.h
| D	src/features/MindyGramFeatures.cpp
| D	src/features/MindyGramFeatures.h
| D	src/features/RealFeatures.cpp
| D	src/features/RealFeatures.h
| D	src/features/RealFileFeatures.cpp
| D	src/features/RealFileFeatures.h
| D	src/features/ShortFeatures.cpp
| D	src/features/ShortFeatures.h
| D	src/features/ShortRealFeatures.cpp
| D	src/features/ShortRealFeatures.h
| D	src/features/SimpleFeatures.h
| D	src/features/SparseFeatures.h
| D	src/features/StringFeatures.cpp
| D	src/features/StringFeatures.h
| D	src/features/TOPFeatures.cpp
| D	src/features/TOPFeatures.h
| D	src/features/WDFeatures.cpp
| D	src/features/WDFeatures.h
| D	src/features/WordFeatures.cpp
| D	src/features/WordFeatures.h
| D	src/features/__init__.py
| D	src/kernel/AUCKernel.cpp
| D	src/kernel/AUCKernel.h
| D	src/kernel/AvgDiagKernelNormalizer.h
| D	src/kernel/Chi2Kernel.cpp
| D	src/kernel/Chi2Kernel.h
| D	src/kernel/CombinedKernel.cpp
| D	src/kernel/CombinedKernel.h
| D	src/kernel/CommUlongStringKernel.cpp
| D	src/kernel/CommUlongStringKernel.h
| D	src/kernel/CommWordStringKernel.cpp
| D	src/kernel/CommWordStringKernel.h
| D	src/kernel/ConstKernel.cpp
| D	src/kernel/ConstKernel.h
| D	src/kernel/CustomKernel.cpp
| D	src/kernel/CustomKernel.h
| D	src/kernel/DiagKernel.cpp
| D	src/kernel/DiagKernel.h
| D	src/kernel/DiceKernelNormalizer.h
| D	src/kernel/DistanceKernel.cpp
| D	src/kernel/DistanceKernel.h
| D	src/kernel/FirstElementKernelNormalizer.h
| D	src/kernel/FixedDegreeStringKernel.cpp
| D	src/kernel/FixedDegreeStringKernel.h
| D	src/kernel/GaussianKernel.cpp
| D	src/kernel/GaussianKernel.h
| D	src/kernel/GaussianShiftKernel.cpp
| D	src/kernel/GaussianShiftKernel.h
| D	src/kernel/GaussianShortRealKernel.cpp
| D	src/kernel/GaussianShortRealKernel.h
| D	src/kernel/HistogramWordStringKernel.cpp
| D	src/kernel/HistogramWordStringKernel.h
| D	src/kernel/IdentityKernelNormalizer.h
| D	src/kernel/Kernel.cpp
| D	src/kernel/Kernel.doxy
| D	src/kernel/Kernel.h
| D	src/kernel/KernelMachine.cpp
| D	src/kernel/KernelMachine.h
| D	src/kernel/KernelNormalizer.h
| D	src/kernel/LinearByteKernel.cpp
| D	src/kernel/LinearByteKernel.h
| D	src/kernel/LinearKernel.cpp
| D	src/kernel/LinearKernel.h
| D	src/kernel/LinearStringKernel.cpp
| D	src/kernel/LinearStringKernel.h
| D	src/kernel/LinearWordKernel.cpp
| D	src/kernel/LinearWordKernel.h
| D	src/kernel/LocalAlignmentStringKernel.cpp
| D	src/kernel/LocalAlignmentStringKernel.h
| D	src/kernel/LocalityImprovedStringKernel.cpp
| D	src/kernel/LocalityImprovedStringKernel.h
| D	src/kernel/MatchWordStringKernel.cpp
| D	src/kernel/MatchWordStringKernel.h
| D	src/kernel/MindyGramKernel.cpp
| D	src/kernel/MindyGramKernel.h
| D	src/kernel/OligoKernel.cpp
| D	src/kernel/OligoKernel.h
| D	src/kernel/PolyKernel.cpp
| D	src/kernel/PolyKernel.h
| D	src/kernel/PolyMatchStringKernel.cpp
| D	src/kernel/PolyMatchStringKernel.h
| D	src/kernel/PolyMatchWordStringKernel.cpp
| D	src/kernel/PolyMatchWordStringKernel.h
| D	src/kernel/PyramidChi2.cpp
| D	src/kernel/PyramidChi2.h
| D	src/kernel/SalzbergWordStringKernel.cpp
| D	src/kernel/SalzbergWordStringKernel.h
| D	src/kernel/SigmoidKernel.cpp
| D	src/kernel/SigmoidKernel.h
| D	src/kernel/SimpleKernel.h
| D	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| D	src/kernel/SimpleLocalityImprovedStringKernel.h
| D	src/kernel/SparseGaussianKernel.cpp
| D	src/kernel/SparseGaussianKernel.h
| D	src/kernel/SparseKernel.h
| D	src/kernel/SparseLinearKernel.cpp
| D	src/kernel/SparseLinearKernel.h
| D	src/kernel/SparsePolyKernel.cpp
| D	src/kernel/SparsePolyKernel.h
| D	src/kernel/SqrtDiagKernelNormalizer.h
| D	src/kernel/StringKernel.h
| D	src/kernel/TanimotoKernelNormalizer.h
| D	src/kernel/TensorProductPairKernel.cpp
| D	src/kernel/TensorProductPairKernel.h
| D	src/kernel/WeightedCommWordStringKernel.cpp
| D	src/kernel/WeightedCommWordStringKernel.h
| D	src/kernel/WeightedDegreePositionStringKernel.cpp
| D	src/kernel/WeightedDegreePositionStringKernel.h
| D	src/kernel/WeightedDegreeStringKernel.cpp
| D	src/kernel/WeightedDegreeStringKernel.h
| D	src/kernel/__init__.py
| D	src/lib/Array.h
| D	src/lib/Array2.h
| D	src/lib/Array3.h
| D	src/lib/Cache.h
| D	src/lib/Cplex.cpp
| D	src/lib/Cplex.h
| D	src/lib/DynamicArray.h
| D	src/lib/File.cpp
| D	src/lib/File.h
| D	src/lib/Library.doxy
| D	src/lib/List.h
| D	src/lib/Mathematics.cpp
| D	src/lib/Mathematics.h
| D	src/lib/ShogunException.cpp
| D	src/lib/ShogunException.h
| D	src/lib/Signal.cpp
| D	src/lib/Signal.h
| D	src/lib/SimpleFile.h
| D	src/lib/Time.cpp
| D	src/lib/Time.h
| D	src/lib/Trie.cpp
| D	src/lib/Trie.h
| D	src/lib/__init__.py
| D	src/lib/cmdline.cpp
| D	src/lib/common.h
| D	src/lib/io.cpp
| D	src/lib/io.h
| D	src/lib/lapack.cpp
| D	src/lib/lapack.h
| D	src/lib/matlab.cpp
| D	src/lib/matlab.h
| D	src/lib/memory.cpp
| D	src/lib/memory.h
| D	src/lib/octave.cpp
| D	src/lib/octave.h
| D	src/lib/python.cpp
| D	src/lib/python.h
| D	src/lib/r.cpp
| D	src/lib/r.h
| A	src/libshogun/base/Parallel.cpp
| A	src/libshogun/base/Parallel.h
| A	src/libshogun/base/SGObject.cpp
| A	src/libshogun/base/SGObject.h
| A	src/libshogun/base/Version.cpp
| A	src/libshogun/base/Version.h
| A	src/libshogun/classifier/Classifier.cpp
| A	src/libshogun/classifier/Classifier.doxy
| A	src/libshogun/classifier/Classifier.h
| A	src/libshogun/classifier/KNN.cpp
| A	src/libshogun/classifier/KNN.h
| A	src/libshogun/classifier/KernelPerceptron.cpp
| A	src/libshogun/classifier/KernelPerceptron.h
| A	src/libshogun/classifier/LDA.cpp
| A	src/libshogun/classifier/LDA.h
| A	src/libshogun/classifier/LPBoost.cpp
| A	src/libshogun/classifier/LPBoost.h
| A	src/libshogun/classifier/LPM.cpp
| A	src/libshogun/classifier/LPM.h
| A	src/libshogun/classifier/LinearClassifier.cpp
| A	src/libshogun/classifier/LinearClassifier.h
| A	src/libshogun/classifier/Perceptron.cpp
| A	src/libshogun/classifier/Perceptron.h
| A	src/libshogun/classifier/PluginEstimate.cpp
| A	src/libshogun/classifier/PluginEstimate.h
| A	src/libshogun/classifier/SubGradientLPM.cpp
| A	src/libshogun/classifier/SubGradientLPM.h
| A	src/libshogun/classifier/__init__.py
| A	src/libshogun/classifier/svm/CPLEXSVM.cpp
| A	src/libshogun/classifier/svm/CPLEXSVM.h
| A	src/libshogun/classifier/svm/GMNPSVM.cpp
| A	src/libshogun/classifier/svm/GMNPSVM.h
| A	src/libshogun/classifier/svm/GMNPSVM.i
| A	src/libshogun/classifier/svm/GNPPSVM.cpp
| A	src/libshogun/classifier/svm/GNPPSVM.h
| A	src/libshogun/classifier/svm/GNPPSVM.i
| A	src/libshogun/classifier/svm/GPBTSVM.cpp
| A	src/libshogun/classifier/svm/GPBTSVM.h
| A	src/libshogun/classifier/svm/GPBTSVM.i
| A	src/libshogun/classifier/svm/LibLinear.cpp
| A	src/libshogun/classifier/svm/LibLinear.h
| A	src/libshogun/classifier/svm/LibLinear.i
| A	src/libshogun/classifier/svm/LibSVM.cpp
| A	src/libshogun/classifier/svm/LibSVM.h
| A	src/libshogun/classifier/svm/LibSVM.i
| A	src/libshogun/classifier/svm/LibSVMMultiClass.cpp
| A	src/libshogun/classifier/svm/LibSVMMultiClass.h
| A	src/libshogun/classifier/svm/LibSVMMultiClass.i
| A	src/libshogun/classifier/svm/LibSVMOneClass.cpp
| A	src/libshogun/classifier/svm/LibSVMOneClass.h
| A	src/libshogun/classifier/svm/LibSVMOneClass.i
| A	src/libshogun/classifier/svm/MPDSVM.cpp
| A	src/libshogun/classifier/svm/MPDSVM.h
| A	src/libshogun/classifier/svm/MPDSVM.i
| A	src/libshogun/classifier/svm/MultiClassSVM.cpp
| A	src/libshogun/classifier/svm/MultiClassSVM.h
| A	src/libshogun/classifier/svm/MultiClassSVM.i
| A	src/libshogun/classifier/svm/SVM.cpp
| A	src/libshogun/classifier/svm/SVM.h
| A	src/libshogun/classifier/svm/SVM.i
| A	src/libshogun/classifier/svm/SVMLin.cpp
| A	src/libshogun/classifier/svm/SVMLin.h
| A	src/libshogun/classifier/svm/SVMLin.i
| A	src/libshogun/classifier/svm/SVMOcas.cpp
| A	src/libshogun/classifier/svm/SVMOcas.h
| A	src/libshogun/classifier/svm/SVMOcas.i
| A	src/libshogun/classifier/svm/SVMSGD.cpp
| A	src/libshogun/classifier/svm/SVMSGD.h
| A	src/libshogun/classifier/svm/SVMSGD.i
| A	src/libshogun/classifier/svm/SVM_libsvm.cpp
| A	src/libshogun/classifier/svm/SVM_libsvm.h
| A	src/libshogun/classifier/svm/SVM_light.cpp
| A	src/libshogun/classifier/svm/SVM_light.h
| A	src/libshogun/classifier/svm/SVM_light.i
| A	src/libshogun/classifier/svm/SVM_linear.cpp
| A	src/libshogun/classifier/svm/SVM_linear.h
| A	src/libshogun/classifier/svm/SubGradientSVM.cpp
| A	src/libshogun/classifier/svm/SubGradientSVM.h
| A	src/libshogun/classifier/svm/SubGradientSVM.i
| A	src/libshogun/classifier/svm/Tron.cpp
| A	src/libshogun/classifier/svm/Tron.h
| A	src/libshogun/classifier/svm/WDSVMOcas.cpp
| A	src/libshogun/classifier/svm/WDSVMOcas.h
| A	src/libshogun/classifier/svm/WDSVMOcas.i
| A	src/libshogun/classifier/svm/__init__.py
| A	src/libshogun/classifier/svm/gmnplib.cpp
| A	src/libshogun/classifier/svm/gmnplib.h
| A	src/libshogun/classifier/svm/gmnpmkl.cpp
| A	src/libshogun/classifier/svm/gmnpmkl.h
| A	src/libshogun/classifier/svm/gnpplib.cpp
| A	src/libshogun/classifier/svm/gnpplib.h
| A	src/libshogun/classifier/svm/gpdt.cpp
| A	src/libshogun/classifier/svm/gpdt.h
| A	src/libshogun/classifier/svm/gpdtsolve.cpp
| A	src/libshogun/classifier/svm/gpdtsolve.h
| A	src/libshogun/classifier/svm/gpm.cpp
| A	src/libshogun/classifier/svm/gpm.h
| A	src/libshogun/classifier/svm/libocas.cpp
| A	src/libshogun/classifier/svm/libocas.h
| A	src/libshogun/classifier/svm/libocas_common.h
| A	src/libshogun/classifier/svm/pr_loqo.cpp
| A	src/libshogun/classifier/svm/pr_loqo.h
| A	src/libshogun/classifier/svm/qpbsvmlib.cpp
| A	src/libshogun/classifier/svm/qpbsvmlib.h
| A	src/libshogun/classifier/svm/qpssvmlib.cpp
| A	src/libshogun/classifier/svm/qpssvmlib.h
| A	src/libshogun/classifier/svm/ssl.cpp
| A	src/libshogun/classifier/svm/ssl.h
| A	src/libshogun/clustering/Clustering.doxy
| A	src/libshogun/clustering/Hierarchical.cpp
| A	src/libshogun/clustering/Hierarchical.h
| A	src/libshogun/clustering/KMeans.cpp
| A	src/libshogun/clustering/KMeans.h
| A	src/libshogun/distance/BrayCurtisDistance.cpp
| A	src/libshogun/distance/BrayCurtisDistance.h
| A	src/libshogun/distance/CanberraMetric.cpp
| A	src/libshogun/distance/CanberraMetric.h
| A	src/libshogun/distance/CanberraWordDistance.cpp
| A	src/libshogun/distance/CanberraWordDistance.h
| A	src/libshogun/distance/ChebyshewMetric.cpp
| A	src/libshogun/distance/ChebyshewMetric.h
| A	src/libshogun/distance/ChiSquareDistance.cpp
| A	src/libshogun/distance/ChiSquareDistance.h
| A	src/libshogun/distance/CosineDistance.cpp
| A	src/libshogun/distance/CosineDistance.h
| A	src/libshogun/distance/Distance.cpp
| A	src/libshogun/distance/Distance.doxy
| A	src/libshogun/distance/Distance.h
| A	src/libshogun/distance/DistanceMachine.cpp
| A	src/libshogun/distance/DistanceMachine.h
| A	src/libshogun/distance/EuclidianDistance.cpp
| A	src/libshogun/distance/EuclidianDistance.h
| A	src/libshogun/distance/GeodesicMetric.cpp
| A	src/libshogun/distance/GeodesicMetric.h
| A	src/libshogun/distance/HammingWordDistance.cpp
| A	src/libshogun/distance/HammingWordDistance.h
| A	src/libshogun/distance/JensenMetric.cpp
| A	src/libshogun/distance/JensenMetric.h
| A	src/libshogun/distance/ManhattanMetric.cpp
| A	src/libshogun/distance/ManhattanMetric.h
| A	src/libshogun/distance/ManhattanWordDistance.cpp
| A	src/libshogun/distance/ManhattanWordDistance.h
| A	src/libshogun/distance/MinkowskiMetric.cpp
| A	src/libshogun/distance/MinkowskiMetric.h
| A	src/libshogun/distance/RealDistance.h
| A	src/libshogun/distance/SimpleDistance.h
| A	src/libshogun/distance/SparseDistance.h
| A	src/libshogun/distance/SparseEuclidianDistance.cpp
| A	src/libshogun/distance/SparseEuclidianDistance.h
| A	src/libshogun/distance/StringDistance.h
| A	src/libshogun/distance/TanimotoDistance.cpp
| A	src/libshogun/distance/TanimotoDistance.h
| A	src/libshogun/distributions/Distribution.cpp
| A	src/libshogun/distributions/Distribution.doxy
| A	src/libshogun/distributions/Distribution.h
| A	src/libshogun/distributions/histogram/Histogram.cpp
| A	src/libshogun/distributions/histogram/Histogram.h
| A	src/libshogun/distributions/histogram/Histogram.i
| A	src/libshogun/distributions/hmm/GHMM.cpp
| A	src/libshogun/distributions/hmm/GHMM.h
| A	src/libshogun/distributions/hmm/GHMM.i
| A	src/libshogun/distributions/hmm/HMM.cpp
| A	src/libshogun/distributions/hmm/HMM.h
| A	src/libshogun/distributions/hmm/HMM.i
| A	src/libshogun/distributions/hmm/LinearHMM.cpp
| A	src/libshogun/distributions/hmm/LinearHMM.h
| A	src/libshogun/distributions/hmm/LinearHMM.i
| A	src/libshogun/evaluation/Evaluation.doxy
| A	src/libshogun/evaluation/PerformanceMeasures.cpp
| A	src/libshogun/evaluation/PerformanceMeasures.h
| A	src/libshogun/features/Alphabet.cpp
| A	src/libshogun/features/Alphabet.h
| A	src/libshogun/features/ByteFeatures.cpp
| A	src/libshogun/features/ByteFeatures.h
| A	src/libshogun/features/CharFeatures.cpp
| A	src/libshogun/features/CharFeatures.h
| A	src/libshogun/features/CombinedDotFeatures.cpp
| A	src/libshogun/features/CombinedDotFeatures.h
| A	src/libshogun/features/CombinedFeatures.cpp
| A	src/libshogun/features/CombinedFeatures.h
| A	src/libshogun/features/DotFeatures.cpp
| A	src/libshogun/features/DotFeatures.h
| A	src/libshogun/features/DummyFeatures.h
| A	src/libshogun/features/ExplicitSpecFeatures.cpp
| A	src/libshogun/features/ExplicitSpecFeatures.h
| A	src/libshogun/features/FKFeatures.cpp
| A	src/libshogun/features/FKFeatures.h
| A	src/libshogun/features/Features.cpp
| A	src/libshogun/features/Features.doxy
| A	src/libshogun/features/Features.h
| A	src/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| A	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| A	src/libshogun/features/IntFeatures.cpp
| A	src/libshogun/features/IntFeatures.h
| A	src/libshogun/features/Labels.cpp
| A	src/libshogun/features/Labels.h
| A	src/libshogun/features/MindyGramFeatures.cpp
| A	src/libshogun/features/MindyGramFeatures.h
| A	src/libshogun/features/RealFeatures.cpp
| A	src/libshogun/features/RealFeatures.h
| A	src/libshogun/features/RealFileFeatures.cpp
| A	src/libshogun/features/RealFileFeatures.h
| A	src/libshogun/features/ShortFeatures.cpp
| A	src/libshogun/features/ShortFeatures.h
| A	src/libshogun/features/ShortRealFeatures.cpp
| A	src/libshogun/features/ShortRealFeatures.h
| A	src/libshogun/features/SimpleFeatures.h
| A	src/libshogun/features/SparseFeatures.h
| A	src/libshogun/features/StringFeatures.cpp
| A	src/libshogun/features/StringFeatures.h
| A	src/libshogun/features/TOPFeatures.cpp
| A	src/libshogun/features/TOPFeatures.h
| A	src/libshogun/features/WDFeatures.cpp
| A	src/libshogun/features/WDFeatures.h
| A	src/libshogun/features/WordFeatures.cpp
| A	src/libshogun/features/WordFeatures.h
| A	src/libshogun/features/__init__.py
| A	src/libshogun/kernel/AUCKernel.cpp
| A	src/libshogun/kernel/AUCKernel.h
| A	src/libshogun/kernel/AvgDiagKernelNormalizer.h
| A	src/libshogun/kernel/Chi2Kernel.cpp
| A	src/libshogun/kernel/Chi2Kernel.h
| A	src/libshogun/kernel/CombinedKernel.cpp
| A	src/libshogun/kernel/CombinedKernel.h
| A	src/libshogun/kernel/CommUlongStringKernel.cpp
| A	src/libshogun/kernel/CommUlongStringKernel.h
| A	src/libshogun/kernel/CommWordStringKernel.cpp
| A	src/libshogun/kernel/CommWordStringKernel.h
| A	src/libshogun/kernel/ConstKernel.cpp
| A	src/libshogun/kernel/ConstKernel.h
| A	src/libshogun/kernel/CustomKernel.cpp
| A	src/libshogun/kernel/CustomKernel.h
| A	src/libshogun/kernel/DiagKernel.cpp
| A	src/libshogun/kernel/DiagKernel.h
| A	src/libshogun/kernel/DiceKernelNormalizer.h
| A	src/libshogun/kernel/DistanceKernel.cpp
| A	src/libshogun/kernel/DistanceKernel.h
| A	src/libshogun/kernel/FirstElementKernelNormalizer.h
| A	src/libshogun/kernel/FixedDegreeStringKernel.cpp
| A	src/libshogun/kernel/FixedDegreeStringKernel.h
| A	src/libshogun/kernel/GaussianKernel.cpp
| A	src/libshogun/kernel/GaussianKernel.h
| A	src/libshogun/kernel/GaussianShiftKernel.cpp
| A	src/libshogun/kernel/GaussianShiftKernel.h
| A	src/libshogun/kernel/GaussianShortRealKernel.cpp
| A	src/libshogun/kernel/GaussianShortRealKernel.h
| A	src/libshogun/kernel/HistogramWordStringKernel.cpp
| A	src/libshogun/kernel/HistogramWordStringKernel.h
| A	src/libshogun/kernel/IdentityKernelNormalizer.h
| A	src/libshogun/kernel/Kernel.cpp
| A	src/libshogun/kernel/Kernel.doxy
| A	src/libshogun/kernel/Kernel.h
| A	src/libshogun/kernel/KernelMachine.cpp
| A	src/libshogun/kernel/KernelMachine.h
| A	src/libshogun/kernel/KernelNormalizer.h
| A	src/libshogun/kernel/LinearByteKernel.cpp
| A	src/libshogun/kernel/LinearByteKernel.h
| A	src/libshogun/kernel/LinearKernel.cpp
| A	src/libshogun/kernel/LinearKernel.h
| A	src/libshogun/kernel/LinearStringKernel.cpp
| A	src/libshogun/kernel/LinearStringKernel.h
| A	src/libshogun/kernel/LinearWordKernel.cpp
| A	src/libshogun/kernel/LinearWordKernel.h
| A	src/libshogun/kernel/LocalAlignmentStringKernel.cpp
| A	src/libshogun/kernel/LocalAlignmentStringKernel.h
| A	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
| A	src/libshogun/kernel/LocalityImprovedStringKernel.h
| A	src/libshogun/kernel/MatchWordStringKernel.cpp
| A	src/libshogun/kernel/MatchWordStringKernel.h
| A	src/libshogun/kernel/MindyGramKernel.cpp
| A	src/libshogun/kernel/MindyGramKernel.h
| A	src/libshogun/kernel/OligoKernel.cpp
| A	src/libshogun/kernel/OligoKernel.h
| A	src/libshogun/kernel/PolyKernel.cpp
| A	src/libshogun/kernel/PolyKernel.h
| A	src/libshogun/kernel/PolyMatchStringKernel.cpp
| A	src/libshogun/kernel/PolyMatchStringKernel.h
| A	src/libshogun/kernel/PolyMatchWordStringKernel.cpp
| A	src/libshogun/kernel/PolyMatchWordStringKernel.h
| A	src/libshogun/kernel/PyramidChi2.cpp
| A	src/libshogun/kernel/PyramidChi2.h
| A	src/libshogun/kernel/SalzbergWordStringKernel.cpp
| A	src/libshogun/kernel/SalzbergWordStringKernel.h
| A	src/libshogun/kernel/SigmoidKernel.cpp
| A	src/libshogun/kernel/SigmoidKernel.h
| A	src/libshogun/kernel/SimpleKernel.h
| A	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| A	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
| A	src/libshogun/kernel/SparseGaussianKernel.cpp
| A	src/libshogun/kernel/SparseGaussianKernel.h
| A	src/libshogun/kernel/SparseKernel.h
| A	src/libshogun/kernel/SparseLinearKernel.cpp
| A	src/libshogun/kernel/SparseLinearKernel.h
| A	src/libshogun/kernel/SparsePolyKernel.cpp
| A	src/libshogun/kernel/SparsePolyKernel.h
| A	src/libshogun/kernel/SqrtDiagKernelNormalizer.h
| A	src/libshogun/kernel/StringKernel.h
| A	src/libshogun/kernel/TanimotoKernelNormalizer.h
| A	src/libshogun/kernel/TensorProductPairKernel.cpp
| A	src/libshogun/kernel/TensorProductPairKernel.h
| A	src/libshogun/kernel/WeightedCommWordStringKernel.cpp
| A	src/libshogun/kernel/WeightedCommWordStringKernel.h
| A	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| A	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| A	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| A	src/libshogun/kernel/WeightedDegreeStringKernel.h
| A	src/libshogun/kernel/__init__.py
| A	src/libshogun/lib/Array.h
| A	src/libshogun/lib/Array2.h
| A	src/libshogun/lib/Array3.h
| A	src/libshogun/lib/Cache.h
| A	src/libshogun/lib/Cplex.cpp
| A	src/libshogun/lib/Cplex.h
| A	src/libshogun/lib/DynamicArray.h
| A	src/libshogun/lib/File.cpp
| A	src/libshogun/lib/File.h
| A	src/libshogun/lib/Library.doxy
| A	src/libshogun/lib/List.h
| A	src/libshogun/lib/Mathematics.cpp
| A	src/libshogun/lib/Mathematics.h
| A	src/libshogun/lib/ShogunException.cpp
| A	src/libshogun/lib/ShogunException.h
| A	src/libshogun/lib/Signal.cpp
| A	src/libshogun/lib/Signal.h
| A	src/libshogun/lib/SimpleFile.h
| A	src/libshogun/lib/Time.cpp
| A	src/libshogun/lib/Time.h
| A	src/libshogun/lib/Trie.cpp
| A	src/libshogun/lib/Trie.h
| A	src/libshogun/lib/__init__.py
| A	src/libshogun/lib/cmdline.cpp
| A	src/libshogun/lib/common.h
| A	src/libshogun/lib/io.cpp
| A	src/libshogun/lib/io.h
| A	src/libshogun/lib/lapack.cpp
| A	src/libshogun/lib/lapack.h
| A	src/libshogun/lib/matlab.cpp
| A	src/libshogun/lib/matlab.h
| A	src/libshogun/lib/memory.cpp
| A	src/libshogun/lib/memory.h
| A	src/libshogun/lib/octave.cpp
| A	src/libshogun/lib/octave.h
| A	src/libshogun/lib/python.cpp
| A	src/libshogun/lib/python.h
| A	src/libshogun/lib/r.cpp
| A	src/libshogun/lib/r.h
| A	src/libshogun/preproc/LogPlusOne.cpp
| A	src/libshogun/preproc/LogPlusOne.h
| A	src/libshogun/preproc/NormDerivativeLem3.cpp
| A	src/libshogun/preproc/NormDerivativeLem3.h
| A	src/libshogun/preproc/NormOne.cpp
| A	src/libshogun/preproc/NormOne.h
| A	src/libshogun/preproc/PCACut.cpp
| A	src/libshogun/preproc/PCACut.h
| A	src/libshogun/preproc/PreProc.cpp
| A	src/libshogun/preproc/PreProc.doxy
| A	src/libshogun/preproc/PreProc.h
| A	src/libshogun/preproc/PruneVarSubMean.cpp
| A	src/libshogun/preproc/PruneVarSubMean.h
| A	src/libshogun/preproc/SimplePreProc.h
| A	src/libshogun/preproc/SortUlongString.cpp
| A	src/libshogun/preproc/SortUlongString.h
| A	src/libshogun/preproc/SortWordString.cpp
| A	src/libshogun/preproc/SortWordString.h
| A	src/libshogun/preproc/SparsePreProc.h
| A	src/libshogun/preproc/StringPreProc.h
| A	src/libshogun/regression/KRR.cpp
| A	src/libshogun/regression/KRR.h
| A	src/libshogun/regression/Regression.doxy
| A	src/libshogun/regression/Regression.h
| A	src/libshogun/regression/svr/LibSVR.cpp
| A	src/libshogun/regression/svr/LibSVR.h
| A	src/libshogun/regression/svr/LibSVR.i
| A	src/libshogun/regression/svr/SVR_light.cpp
| A	src/libshogun/regression/svr/SVR_light.h
| A	src/libshogun/regression/svr/SVR_light.i
| A	src/libshogun/structure/DynProg.cpp
| A	src/libshogun/structure/DynProg.h
| A	src/libshogun/structure/Plif.cpp
| A	src/libshogun/structure/Plif.h
| A	src/libshogun/structure/PlifArray.cpp
| A	src/libshogun/structure/PlifArray.h
| A	src/libshogun/structure/PlifBase.h
| A	src/libshogun/structure/Structure.doxy
| D	src/preproc/LogPlusOne.cpp
| D	src/preproc/LogPlusOne.h
| D	src/preproc/NormDerivativeLem3.cpp
| D	src/preproc/NormDerivativeLem3.h
| D	src/preproc/NormOne.cpp
| D	src/preproc/NormOne.h
| D	src/preproc/PCACut.cpp
| D	src/preproc/PCACut.h
| D	src/preproc/PreProc.cpp
| D	src/preproc/PreProc.doxy
| D	src/preproc/PreProc.h
| D	src/preproc/PruneVarSubMean.cpp
| D	src/preproc/PruneVarSubMean.h
| D	src/preproc/SimplePreProc.h
| D	src/preproc/SortUlongString.cpp
| D	src/preproc/SortUlongString.h
| D	src/preproc/SortWordString.cpp
| D	src/preproc/SortWordString.h
| D	src/preproc/SparsePreProc.h
| D	src/preproc/StringPreProc.h
| D	src/regression/KRR.cpp
| D	src/regression/KRR.h
| D	src/regression/Regression.doxy
| D	src/regression/Regression.h
| D	src/regression/svr/LibSVR.cpp
| D	src/regression/svr/LibSVR.h
| D	src/regression/svr/LibSVR.i
| D	src/regression/svr/SVR_light.cpp
| D	src/regression/svr/SVR_light.h
| D	src/regression/svr/SVR_light.i
| D	src/structure/DynProg.cpp
| D	src/structure/DynProg.h
| D	src/structure/Plif.cpp
| D	src/structure/Plif.h
| D	src/structure/PlifArray.cpp
| D	src/structure/PlifArray.h
| D	src/structure/PlifBase.h
| D	src/structure/Structure.doxy
|  
* commit f8878979a52e5717cd3ce26e39be80d23a3a0922
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 1 22:50:54 2009 +0000
| 
|     begin restructuring of code
| 
| D	src/base/Parallel.i
| D	src/base/SGObject.i
| D	src/base/Version.i
| D	src/classifier/Classifier.i
| D	src/classifier/KNN.i
| D	src/classifier/KernelPerceptron.i
| D	src/classifier/LDA.i
| D	src/classifier/LPBoost.i
| D	src/classifier/LPM.i
| D	src/classifier/LinearClassifier.i
| D	src/classifier/Perceptron.i
| D	src/classifier/PluginEstimate.i
| D	src/classifier/SubGradientLPM.i
| D	src/clustering/Clustering.i
| D	src/clustering/Hierarchical.i
| D	src/clustering/KMeans.i
| D	src/distance/BrayCurtisDistance.i
| D	src/distance/CanberraMetric.i
| D	src/distance/CanberraWordDistance.i
| D	src/distance/ChebyshewMetric.i
| D	src/distance/ChiSquareDistance.i
| D	src/distance/CosineDistance.i
| D	src/distance/Distance.i
| D	src/distance/DistanceMachine.i
| D	src/distance/EuclidianDistance.i
| D	src/distance/GeodesicMetric.i
| D	src/distance/HammingWordDistance.i
| D	src/distance/JensenMetric.i
| D	src/distance/ManhattanMetric.i
| D	src/distance/ManhattanWordDistance.i
| D	src/distance/MinkowskiMetric.i
| D	src/distance/RealDistance.i
| D	src/distance/SimpleDistance.i
| D	src/distance/SparseDistance.i
| D	src/distance/SparseEuclidianDistance.i
| D	src/distance/StringDistance.i
| D	src/distance/TanimotoDistance.i
| D	src/distributions/Distribution.i
| D	src/evaluation/Evaluation.i
| D	src/evaluation/PerformanceMeasures.i
| D	src/features/Alphabet.i
| D	src/features/ByteFeatures.i
| D	src/features/CharFeatures.i
| D	src/features/CombinedDotFeatures.i
| D	src/features/CombinedFeatures.i
| D	src/features/DotFeatures.i
| D	src/features/DummyFeatures.i
| D	src/features/ExplicitSpecFeatures.i
| D	src/features/FKFeatures.i
| D	src/features/Features.i
| D	src/features/ImplicitWeightedSpecFeatures.i
| D	src/features/IntFeatures.i
| D	src/features/Labels.i
| D	src/features/MindyGramFeatures.i
| D	src/features/RealFeatures.i
| D	src/features/RealFileFeatures.i
| D	src/features/ShortFeatures.i
| D	src/features/ShortRealFeatures.i
| D	src/features/SimpleFeatures.i
| D	src/features/SparseFeatures.i
| D	src/features/StringFeatures.i
| D	src/features/TOPFeatures.i
| D	src/features/WDFeatures.i
| D	src/features/WordFeatures.i
| A	src/interfaces/modular/AUCKernel.i
| A	src/interfaces/modular/Alphabet.i
| A	src/interfaces/modular/Array.i
| A	src/interfaces/modular/Array2.i
| A	src/interfaces/modular/Array3.i
| A	src/interfaces/modular/AvgDiagKernelNormalizer.i
| A	src/interfaces/modular/BrayCurtisDistance.i
| A	src/interfaces/modular/ByteFeatures.i
| A	src/interfaces/modular/Cache.i
| A	src/interfaces/modular/CanberraMetric.i
| A	src/interfaces/modular/CanberraWordDistance.i
| A	src/interfaces/modular/CharFeatures.i
| A	src/interfaces/modular/ChebyshewMetric.i
| A	src/interfaces/modular/Chi2Kernel.i
| A	src/interfaces/modular/ChiSquareDistance.i
| A	src/interfaces/modular/Classifier.i
| A	src/interfaces/modular/Clustering.i
| A	src/interfaces/modular/CombinedDotFeatures.i
| A	src/interfaces/modular/CombinedFeatures.i
| A	src/interfaces/modular/CombinedKernel.i
| A	src/interfaces/modular/CommUlongStringKernel.i
| A	src/interfaces/modular/CommWordStringKernel.i
| A	src/interfaces/modular/ConstKernel.i
| A	src/interfaces/modular/CosineDistance.i
| A	src/interfaces/modular/CustomKernel.i
| A	src/interfaces/modular/DiagKernel.i
| A	src/interfaces/modular/DiceKernelNormalizer.i
| A	src/interfaces/modular/Distance.i
| A	src/interfaces/modular/DistanceKernel.i
| A	src/interfaces/modular/DistanceMachine.i
| A	src/interfaces/modular/Distribution.i
| A	src/interfaces/modular/DotFeatures.i
| A	src/interfaces/modular/DummyFeatures.i
| A	src/interfaces/modular/DynProg.i
| A	src/interfaces/modular/DynamicArray.i
| A	src/interfaces/modular/EuclidianDistance.i
| A	src/interfaces/modular/Evaluation.i
| A	src/interfaces/modular/ExplicitSpecFeatures.i
| A	src/interfaces/modular/FKFeatures.i
| A	src/interfaces/modular/Features.i
| A	src/interfaces/modular/File.i
| A	src/interfaces/modular/FixedDegreeStringKernel.i
| A	src/interfaces/modular/GaussianKernel.i
| A	src/interfaces/modular/GaussianShiftKernel.i
| A	src/interfaces/modular/GaussianShortRealKernel.i
| A	src/interfaces/modular/GeodesicMetric.i
| A	src/interfaces/modular/HammingWordDistance.i
| A	src/interfaces/modular/Hierarchical.i
| A	src/interfaces/modular/HistogramWordStringKernel.i
| A	src/interfaces/modular/IdentityKernelNormalizer.i
| A	src/interfaces/modular/ImplicitWeightedSpecFeatures.i
| A	src/interfaces/modular/IntFeatures.i
| A	src/interfaces/modular/JensenMetric.i
| A	src/interfaces/modular/KMeans.i
| A	src/interfaces/modular/KNN.i
| A	src/interfaces/modular/KRR.i
| A	src/interfaces/modular/Kernel.i
| A	src/interfaces/modular/KernelMachine.i
| A	src/interfaces/modular/KernelNormalizer.i
| A	src/interfaces/modular/KernelPerceptron.i
| A	src/interfaces/modular/LDA.i
| A	src/interfaces/modular/LPBoost.i
| A	src/interfaces/modular/LPM.i
| A	src/interfaces/modular/Labels.i
| A	src/interfaces/modular/Library.i
| A	src/interfaces/modular/LinearByteKernel.i
| A	src/interfaces/modular/LinearClassifier.i
| A	src/interfaces/modular/LinearKernel.i
| A	src/interfaces/modular/LinearStringKernel.i
| A	src/interfaces/modular/LinearWordKernel.i
| A	src/interfaces/modular/List.i
| A	src/interfaces/modular/LocalAlignmentStringKernel.i
| A	src/interfaces/modular/LocalityImprovedStringKernel.i
| A	src/interfaces/modular/LogPlusOne.i
| A	src/interfaces/modular/ManhattanMetric.i
| A	src/interfaces/modular/ManhattanWordDistance.i
| A	src/interfaces/modular/MatchWordStringKernel.i
| A	src/interfaces/modular/Mathematics.i
| A	src/interfaces/modular/MindyGramFeatures.i
| A	src/interfaces/modular/MindyGramKernel.i
| A	src/interfaces/modular/MinkowskiMetric.i
| A	src/interfaces/modular/NormDerivativeLem3.i
| A	src/interfaces/modular/NormOne.i
| A	src/interfaces/modular/OligoKernel.i
| A	src/interfaces/modular/PCACut.i
| A	src/interfaces/modular/Parallel.i
| A	src/interfaces/modular/Perceptron.i
| A	src/interfaces/modular/PerformanceMeasures.i
| A	src/interfaces/modular/Plif.i
| A	src/interfaces/modular/PlifArray.i
| A	src/interfaces/modular/PlifBase.i
| A	src/interfaces/modular/PluginEstimate.i
| A	src/interfaces/modular/PolyKernel.i
| A	src/interfaces/modular/PolyMatchStringKernel.i
| A	src/interfaces/modular/PolyMatchWordStringKernel.i
| A	src/interfaces/modular/PreProc.i
| A	src/interfaces/modular/PruneVarSubMean.i
| A	src/interfaces/modular/PyramidChi2.i
| A	src/interfaces/modular/RealDistance.i
| A	src/interfaces/modular/RealFeatures.i
| A	src/interfaces/modular/RealFileFeatures.i
| A	src/interfaces/modular/Regression.i
| A	src/interfaces/modular/SGObject.i
| A	src/interfaces/modular/SalzbergWordStringKernel.i
| A	src/interfaces/modular/ShogunException.i
| A	src/interfaces/modular/ShortFeatures.i
| A	src/interfaces/modular/ShortRealFeatures.i
| A	src/interfaces/modular/SigmoidKernel.i
| A	src/interfaces/modular/Signal.i
| A	src/interfaces/modular/SimpleDistance.i
| A	src/interfaces/modular/SimpleFeatures.i
| A	src/interfaces/modular/SimpleFile.i
| A	src/interfaces/modular/SimpleKernel.i
| A	src/interfaces/modular/SimpleLocalityImprovedStringKernel.i
| A	src/interfaces/modular/SimplePreProc.i
| A	src/interfaces/modular/SortUlongString.i
| A	src/interfaces/modular/SortWordString.i
| A	src/interfaces/modular/SparseDistance.i
| A	src/interfaces/modular/SparseEuclidianDistance.i
| A	src/interfaces/modular/SparseFeatures.i
| A	src/interfaces/modular/SparseGaussianKernel.i
| A	src/interfaces/modular/SparseKernel.i
| A	src/interfaces/modular/SparseLinearKernel.i
| A	src/interfaces/modular/SparsePolyKernel.i
| A	src/interfaces/modular/SparsePreProc.i
| A	src/interfaces/modular/SqrtDiagKernelNormalizer.i
| A	src/interfaces/modular/StringDistance.i
| A	src/interfaces/modular/StringFeatures.i
| A	src/interfaces/modular/StringKernel.i
| A	src/interfaces/modular/StringPreProc.i
| A	src/interfaces/modular/Structure.i
| A	src/interfaces/modular/SubGradientLPM.i
| A	src/interfaces/modular/TOPFeatures.i
| A	src/interfaces/modular/TanimotoDistance.i
| A	src/interfaces/modular/TanimotoKernelNormalizer.i
| A	src/interfaces/modular/TensorProductPairKernel.i
| A	src/interfaces/modular/Time.i
| A	src/interfaces/modular/Trie.i
| A	src/interfaces/modular/Version.i
| A	src/interfaces/modular/WDFeatures.i
| A	src/interfaces/modular/WeightedCommWordStringKernel.i
| A	src/interfaces/modular/WeightedDegreePositionStringKernel.i
| A	src/interfaces/modular/WeightedDegreeStringKernel.i
| A	src/interfaces/modular/WordFeatures.i
| A	src/interfaces/modular/common.i
| A	src/interfaces/modular/io.i
| A	src/interfaces/modular/lapack.i
| A	src/interfaces/modular/octave_typemaps.i
| A	src/interfaces/modular/python_typemaps.i
| A	src/interfaces/modular/r_typemaps.i
| A	src/interfaces/modular/swig_typemaps.i
| D	src/kernel/AUCKernel.i
| D	src/kernel/AvgDiagKernelNormalizer.i
| D	src/kernel/Chi2Kernel.i
| D	src/kernel/CombinedKernel.i
| D	src/kernel/CommUlongStringKernel.i
| D	src/kernel/CommWordStringKernel.i
| D	src/kernel/ConstKernel.i
| D	src/kernel/CustomKernel.i
| D	src/kernel/DiagKernel.i
| D	src/kernel/DiceKernelNormalizer.i
| D	src/kernel/DistanceKernel.i
| D	src/kernel/FixedDegreeStringKernel.i
| D	src/kernel/GaussianKernel.i
| D	src/kernel/GaussianShiftKernel.i
| D	src/kernel/GaussianShortRealKernel.i
| D	src/kernel/HistogramWordStringKernel.i
| D	src/kernel/IdentityKernelNormalizer.i
| D	src/kernel/Kernel.i
| D	src/kernel/KernelMachine.i
| D	src/kernel/KernelNormalizer.i
| D	src/kernel/LinearByteKernel.i
| D	src/kernel/LinearKernel.i
| D	src/kernel/LinearStringKernel.i
| D	src/kernel/LinearWordKernel.i
| D	src/kernel/LocalAlignmentStringKernel.i
| D	src/kernel/LocalityImprovedStringKernel.i
| D	src/kernel/MatchWordStringKernel.i
| D	src/kernel/MindyGramKernel.i
| D	src/kernel/OligoKernel.i
| D	src/kernel/PolyKernel.i
| D	src/kernel/PolyMatchStringKernel.i
| D	src/kernel/PolyMatchWordStringKernel.i
| D	src/kernel/PyramidChi2.i
| D	src/kernel/SalzbergWordStringKernel.i
| D	src/kernel/SigmoidKernel.i
| D	src/kernel/SimpleKernel.i
| D	src/kernel/SimpleLocalityImprovedStringKernel.i
| D	src/kernel/SparseGaussianKernel.i
| D	src/kernel/SparseKernel.i
| D	src/kernel/SparseLinearKernel.i
| D	src/kernel/SparsePolyKernel.i
| D	src/kernel/SqrtDiagKernelNormalizer.i
| D	src/kernel/StringKernel.i
| D	src/kernel/TanimotoKernelNormalizer.i
| D	src/kernel/TensorProductPairKernel.i
| D	src/kernel/WeightedCommWordStringKernel.i
| D	src/kernel/WeightedDegreePositionStringKernel.i
| D	src/kernel/WeightedDegreeStringKernel.i
| D	src/lib/Array.i
| D	src/lib/Array2.i
| D	src/lib/Array3.i
| D	src/lib/Cache.i
| D	src/lib/DynamicArray.i
| D	src/lib/File.i
| D	src/lib/Library.i
| D	src/lib/List.i
| D	src/lib/Mathematics.i
| D	src/lib/ShogunException.i
| D	src/lib/Signal.i
| D	src/lib/SimpleFile.i
| D	src/lib/Time.i
| D	src/lib/Trie.i
| D	src/lib/common.i
| D	src/lib/io.i
| D	src/lib/lapack.i
| D	src/lib/octave_typemaps.i
| D	src/lib/python_typemaps.i
| D	src/lib/r_typemaps.i
| D	src/lib/swig_typemaps.i
| D	src/preproc/LogPlusOne.i
| D	src/preproc/NormDerivativeLem3.i
| D	src/preproc/NormOne.i
| D	src/preproc/PCACut.i
| D	src/preproc/PreProc.i
| D	src/preproc/PruneVarSubMean.i
| D	src/preproc/SimplePreProc.i
| D	src/preproc/SortUlongString.i
| D	src/preproc/SortWordString.i
| D	src/preproc/SparsePreProc.i
| D	src/preproc/StringPreProc.i
| D	src/regression/KRR.i
| D	src/regression/Regression.i
| D	src/structure/DynProg.i
| D	src/structure/Plif.i
| D	src/structure/PlifArray.i
| D	src/structure/PlifBase.i
| D	src/structure/Structure.i
|  
* commit 40bde6a3e59bf2844dc5798ec65714a220f66339
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 1 22:42:56 2009 +0000
| 
|     the .i files need <shogun/path/to/file> as they now base on libshogun
| 
| M	src/base/Parallel.i
| M	src/base/SGObject.i
| M	src/base/Version.i
| M	src/classifier/Classifier.i
| M	src/classifier/KNN.i
| M	src/classifier/KernelPerceptron.i
| M	src/classifier/LDA.i
| M	src/classifier/LPBoost.i
| M	src/classifier/LPM.i
| M	src/classifier/LinearClassifier.i
| M	src/classifier/Perceptron.i
| M	src/classifier/PluginEstimate.i
| M	src/classifier/SubGradientLPM.i
| M	src/clustering/Clustering.i
| M	src/clustering/Hierarchical.i
| M	src/clustering/KMeans.i
| M	src/distance/BrayCurtisDistance.i
| M	src/distance/CanberraMetric.i
| M	src/distance/CanberraWordDistance.i
| M	src/distance/ChebyshewMetric.i
| M	src/distance/ChiSquareDistance.i
| M	src/distance/CosineDistance.i
|  
* commit a63b09fc0aaf152855689ef5ab5db0a3dfc6c1ad
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 1 22:41:18 2009 +0000
| 
|     also erase libshogun.a on clean
| 
| M	src/Makefile
|  
* commit 8aa1c8b1ecb6b72449ff624bb8ca518c44d31dd3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 1 08:11:34 2009 +0000
| 
|     add get_name function to gmnpmkl wrappers - fixes compilation when glpk is not available
| 
| M	src/classifier/svm/gmnpmkl.h
| M	src/lib/Array.h
|  
* commit d30f8dab9cfb61b04fd86ab78fb77308327a2c35
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 31 21:39:12 2009 +0000
| 
|     all things except HMM work stably+leak-free in static cmdline if
| 
| M	src/features/CombinedFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
|  
* commit f0f22d47b607edad7d7e8e2d274b614f506b5d6e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 31 21:33:54 2009 +0000
| 
|     fix example
| 
| M	examples/cmdline/all_kernels.sg
|  
* commit 25bdda1253eba108cc6f27ba77ec7d144506f5d8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 31 20:52:03 2009 +0000
| 
|     clustering and distances are now leak free
| 
| M	src/clustering/KMeans.cpp
| M	src/distance/Distance.h
| M	src/interface/SGInterface.cpp
|  
* commit fd9e40556347ff4d961a5c75a0256b00bfdbab57
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 31 19:05:17 2009 +0000
| 
|     fixes for many further memory leaks
| 
| M	src/base/SGObject.h
| M	src/classifier/KNN.h
| M	src/classifier/KernelPerceptron.h
| M	src/classifier/LDA.h
| M	src/classifier/Perceptron.h
| M	src/classifier/PluginEstimate.h
| M	src/classifier/svm/GMNPSVM.h
| M	src/classifier/svm/GNPPSVM.h
| M	src/classifier/svm/GPBTSVM.h
| M	src/classifier/svm/LibLinear.h
| M	src/classifier/svm/LibSVM.h
| M	src/classifier/svm/LibSVMMultiClass.h
| M	src/classifier/svm/LibSVMOneClass.h
| M	src/classifier/svm/MPDSVM.h
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVMLin.h
| M	src/classifier/svm/SVMOcas.h
| M	src/classifier/svm/SVMSGD.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/Tron.h
| M	src/classifier/svm/WDSVMOcas.h
| M	src/classifier/svm/gmnplib.h
| M	src/classifier/svm/gnpplib.h
| M	src/classifier/svm/gpdtsolve.h
| M	src/classifier/svm/qpbsvmlib.h
| M	src/clustering/Hierarchical.h
| M	src/clustering/KMeans.h
| M	src/distance/BrayCurtisDistance.h
| M	src/distance/CanberraMetric.h
| M	src/distance/CanberraWordDistance.h
| M	src/distance/ChebyshewMetric.h
| M	src/distance/ChiSquareDistance.h
| M	src/distance/CosineDistance.h
| M	src/distance/Distance.h
| M	src/distance/EuclidianDistance.h
| M	src/distance/GeodesicMetric.h
| M	src/distance/HammingWordDistance.h
| M	src/distance/JensenMetric.h
| M	src/distance/ManhattanMetric.h
| M	src/distance/ManhattanWordDistance.h
| M	src/distance/MinkowskiMetric.h
| M	src/distance/SparseEuclidianDistance.h
| M	src/distance/TanimotoDistance.h
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/LinearHMM.h
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.h
| M	src/features/CombinedDotFeatures.h
| M	src/features/CombinedFeatures.cpp
| M	src/features/CombinedFeatures.h
| M	src/features/DummyFeatures.h
| M	src/features/ExplicitSpecFeatures.h
| M	src/features/FKFeatures.h
| M	src/features/ImplicitWeightedSpecFeatures.h
| M	src/features/IntFeatures.h
| M	src/features/Labels.h
| M	src/features/MindyGramFeatures.h
| M	src/features/RealFeatures.h
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.h
| M	src/features/ShortRealFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.h
| M	src/features/WDFeatures.h
| M	src/features/WordFeatures.h
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIDistance.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUIStructure.h
| M	src/guilib/GUITime.h
| M	src/interface/CmdLineInterface.h
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/kernel/AUCKernel.h
| M	src/kernel/AvgDiagKernelNormalizer.h
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.h
| M	src/kernel/DiagKernel.h
| M	src/kernel/DistanceKernel.h
| M	src/kernel/FirstElementKernelNormalizer.h
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/GaussianKernel.h
| M	src/kernel/GaussianShiftKernel.h
| M	src/kernel/GaussianShortRealKernel.h
| M	src/kernel/HistogramWordStringKernel.h
| M	src/kernel/IdentityKernelNormalizer.h
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearStringKernel.h
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalAlignmentStringKernel.h
| M	src/kernel/LocalityImprovedStringKernel.h
| M	src/kernel/MatchWordStringKernel.h
| M	src/kernel/MindyGramKernel.h
| M	src/kernel/OligoKernel.h
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchStringKernel.h
| M	src/kernel/PolyMatchWordStringKernel.h
| M	src/kernel/PyramidChi2.h
| M	src/kernel/SalzbergWordStringKernel.h
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/SqrtDiagKernelNormalizer.h
| M	src/kernel/TensorProductPairKernel.h
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/lib/Cache.h
| M	src/lib/DynamicArray.h
| M	src/lib/File.h
| M	src/lib/List.h
| M	src/lib/Mathematics.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.h
| M	src/lib/Trie.h
| M	src/regression/KRR.h
| M	src/regression/svr/LibSVR.h
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
| M	src/structure/DynProg.h
| M	src/structure/Plif.h
| M	src/structure/PlifArray.h
|  
* commit ef8af7173d51d1b00af54bfc1c82ffb2d5062c48
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 31 14:58:52 2009 +0000
| 
|     fix further memory leaks
| 
| M	src/features/Features.cpp
| M	src/features/SimpleFeatures.h
| M	src/features/StringFeatures.h
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/interface/SGInterface.cpp
| M	src/lib/List.h
|  
* commit 7e7fcadac59c7f18f395548109fc38d970b10b84
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 31 13:47:19 2009 +0000
| 
|     classifier and regression methods are leak free now
| 
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/MPDSVM.h
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMSGD.cpp
| M	src/features/StringFeatures.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/SGInterface.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/regression/svr/SVR_light.cpp
|  
* commit 9d320c541f2b27648af53e99dee021e58976a4ec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 31 09:40:11 2009 +0000
| 
|     fix further leaks in get_classifier
| 
| M	src/classifier/LinearClassifier.h
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/SVMOcas.cpp
| M	src/clustering/Hierarchical.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIKernel.cpp
|  
* commit db301e7534d41a116be00d774fe7f4712cd75ec0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 31 08:43:46 2009 +0000
| 
|     fix another leak and get rid of extra svmlight specific prloqo interface files
| 
| D	src/classifier/svm/Optimizer.cpp
| D	src/classifier/svm/Optimizer.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/regression/svr/SVR_light.cpp
|  
* commit 8949ae77a6fe4a631ff8babe6e3764344d376a47
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 31 08:15:35 2009 +0000
| 
|     implement basis function get_name() for all SGObject derived objects. this increadibly aids memory leak tracing
| 
| M	src/NEWS
| M	src/base/SGObject.h
| M	src/classifier/KNN.h
| M	src/classifier/KernelPerceptron.h
| M	src/classifier/LDA.h
| M	src/classifier/Perceptron.h
| M	src/classifier/PluginEstimate.h
| M	src/classifier/svm/GPBTSVM.h
| M	src/classifier/svm/LibLinear.h
| M	src/classifier/svm/LibSVM.h
| M	src/classifier/svm/LibSVMMultiClass.h
| M	src/classifier/svm/LibSVMOneClass.h
| M	src/classifier/svm/MPDSVM.h
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVMLin.h
| M	src/classifier/svm/SVMOcas.h
| M	src/classifier/svm/SVMSGD.h
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/Tron.h
| M	src/classifier/svm/WDSVMOcas.h
| M	src/classifier/svm/gmnplib.h
| M	src/classifier/svm/gnpplib.h
| M	src/classifier/svm/gpdtsolve.h
| M	src/classifier/svm/qpbsvmlib.h
| M	src/clustering/Hierarchical.h
| M	src/clustering/KMeans.h
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/LinearHMM.h
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.h
| M	src/features/CombinedDotFeatures.h
| M	src/features/CombinedFeatures.h
| M	src/features/DummyFeatures.h
| M	src/features/ExplicitSpecFeatures.h
| M	src/features/FKFeatures.h
| M	src/features/ImplicitWeightedSpecFeatures.h
| M	src/features/IntFeatures.h
| M	src/features/Labels.h
| M	src/features/MindyGramFeatures.h
| M	src/features/RealFeatures.h
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.h
| M	src/features/ShortRealFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.h
| M	src/features/WDFeatures.h
| M	src/features/WordFeatures.h
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIDistance.h
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUIStructure.cpp
| M	src/guilib/GUIStructure.h
| M	src/guilib/GUITime.h
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/kernel/AvgDiagKernelNormalizer.h
| M	src/kernel/FirstElementKernelNormalizer.h
| M	src/kernel/GaussianKernel.h
| M	src/kernel/IdentityKernelNormalizer.h
| M	src/kernel/Kernel.h
| M	src/kernel/SqrtDiagKernelNormalizer.h
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/lib/Cache.h
| M	src/lib/Cplex.h
| M	src/lib/DynamicArray.h
| M	src/lib/File.h
| M	src/lib/List.h
| M	src/lib/Mathematics.h
| M	src/lib/Signal.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.h
| M	src/lib/Trie.h
| M	src/lib/io.h
| M	src/preproc/LogPlusOne.h
| M	src/preproc/NormOne.h
| M	src/preproc/PCACut.h
| M	src/preproc/PruneVarSubMean.h
| M	src/preproc/SortUlongString.h
| M	src/preproc/SortWordString.h
| M	src/regression/KRR.h
| M	src/structure/DynProg.h
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
| M	src/structure/PlifArray.h
|  
* commit fb257f397c7c552cd6b3dd19ea6bca32b866c1e3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 31 01:28:12 2009 +0000
| 
|     fix many memory leaks and crashers due to missing SG_REF/UNREFs
| 
| M	src/base/SGObject.h
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/features/CombinedFeatures.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/interface/SGInterface.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/lib/List.h
|  
* commit 9e5ce5e70d1c1b1ac6e07b6d88c1e6c884db9cc4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 30 23:12:49 2009 +0000
| 
|     convert everything from delete to use SG_UNREF
| 
| M	src/base/SGObject.h
| M	src/features/StringFeatures.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUILabels.cpp
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIStructure.cpp
| M	src/guilib/GUIStructure.h
| M	src/guilib/GUITime.cpp
| M	src/interface/SGInterface.cpp
| M	src/lib/List.h
|  
* commit b562db0da8b874f68ee47f78426ab5505219cb54
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 30 22:48:08 2009 +0000
| 
|     fix uninited refcounts
| 
| M	src/base/Parallel.cpp
| M	src/base/Version.cpp
| M	src/lib/io.cpp
|  
* commit d1e7d0698deccb913f5882d42dc0c737d621ae2a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 30 22:22:23 2009 +0000
| 
|     - convert all classes to use new io -> sg_io /parallel/version global objects
|     - remove all interface specific cruft from anything not under interface / guilib
|     - introduce finite() in lib/Mathematics.h
| 
| M	src/base/Parallel.cpp
| M	src/base/Parallel.h
| M	src/base/SGObject.cpp
| M	src/base/SGObject.h
| M	src/base/Version.h
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/clustering/KMeans.cpp
| M	src/distributions/hmm/HMM.cpp
| M	src/features/DotFeatures.cpp
| M	src/features/StringFeatures.h
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIPreProc.cpp
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/MatlabInterface.cpp
| M	src/interface/OctaveInterface.cpp
| M	src/interface/PythonInterface.cpp
| M	src/interface/RInterface.cpp
| M	src/interface/SGInterface.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/lib/DynamicArray.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/python.cpp
| M	src/lib/r.h
| M	src/regression/svr/SVR_light.cpp
| M	src/structure/DynProg.cpp
|  
* commit 881593ec000c834c2fbe85769684f9160b277f51
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 30 16:17:10 2009 +0000
| 
|     broken commit DON'T USE
| 
| M	src/base/SGObject.cpp
| M	src/base/SGObject.h
| M	src/classifier/svm/gmnpmkl.cpp
| M	src/kernel/Kernel.cpp
| M	src/lib/io.h
|  
* commit 1db200ae6592816aff1696e09c60c2f16d20d58d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 30 16:02:37 2009 +0000
| 
|     testsuite:
|     - Consistency renaming of a couple of functions in tester for python-modular.
| 
| M	testsuite/python-modular/classifier.py
| M	testsuite/python-modular/clustering.py
| M	testsuite/python-modular/distance.py
| M	testsuite/python-modular/distribution.py
| M	testsuite/python-modular/kernel.py
| M	testsuite/python-modular/preproc.py
| M	testsuite/python-modular/regression.py
|  
* commit 8dad422522db339be69dbac3bedb986be8861ecc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 30 12:57:27 2009 +0000
| 
|     remove obsolete code
| 
| M	src/structure/Plif.h
|  
* commit 63eef75fc8924cd4b7d02ee662b09ec04e361a83
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 30 12:56:29 2009 +0000
| 
|     remove obsolete code
| 
| M	src/structure/Plif.cpp
|  
* commit 9981a84bf9e1a8935cf58a43ce7a36b9ee64165d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 30 12:51:56 2009 +0000
| 
|     This attempts to get rid of the language specific code in lib/io.{h,cpp} and lib/Signal.{cpp,h}.
|     
|     To this end every interface has to define a couple of global functions called
|     sg_print_{message,warning,error} and sg_cancel_computations. The printing
|     functions are called whenever anything is writting to the screen (and don't
|     raise exceptions or anything).
|     
|     The cancel function is called to allow an interface to check for the occurrance
|     of a signal and to set the immediate cancel flag. It will be called from
|     core/busy loops only. This is to fix the varius segmentation faults caused by
|     throwing exceptions within signal handlers (which are illegal - not in the
|     standard).
| 
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| A	src/lib/cmdline.cpp
| M	src/lib/io.cpp
| M	src/lib/io.h
| A	src/lib/matlab.cpp
| A	src/lib/octave.cpp
| A	src/lib/python.cpp
| A	src/lib/r.cpp
|  
* commit 3e18365e0239c3baed05f435670b7510a1426dc3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 30 09:14:37 2009 +0000
| 
|     on make install don't install gui/interface headers for libshogun
| 
| M	src/Makefile
|  
* commit 517728894e95f78d19e6621c36b875432735d3ab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 30 07:53:43 2009 +0000
| 
|     trap a division by zero
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 4a2327db222763c04de9dd3d4d8d0202fd5dc347
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jan 29 15:35:39 2009 +0000
| 
|     testsuite:
|     - README how to extend testsuite, part II, attempt 1.
| 
| M	testsuite/README
|  
* commit 5f9fcc371667f65346881cfeb970e433729fcb77
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 29 07:13:34 2009 +0000
| 
|     update news
| 
| M	src/NEWS
|  
* commit 559fab66f34f13801ebfb06f4f312bc4b462dbe0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 23:47:08 2009 +0000
| 
|     potentially fix the same things for WDSVMOcas
| 
| M	src/classifier/svm/WDSVMOcas.cpp
|  
* commit da0ba57b5f42ba169c6f3d76b447913f0159ecf4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 23:38:25 2009 +0000
| 
|     bias finally works for svmocas
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/guilib/GUIClassifier.cpp
|  
* commit 6153e5b6c79013853d17c009a5603e1f40561e7a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 28 22:23:11 2009 +0000
| 
|     testsuite:
|     - Added README how to use and extend the testsuite, part I, attempt 1.
| 
| A	testsuite/README
|  
* commit 36b82dbeed96415560badf208b0e6eb09424a3d8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 28 21:38:39 2009 +0000
| 
|     testsuite:
|     - Renamed python-specific term 'module' to testsuite-specific term 'category'.
| 
| M	testsuite/generator/__init__.py
|  
* commit 82af766a5ffe1ee5435086dfe9f8318836b561a9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 28 20:07:31 2009 +0000
| 
|     testsuite:
|     - Added datafiles for WDFeatures on SVMOcas.
| 
| A	testsuite/data/classifier/SVMOcas_0017_1en05_1_05_False.m
| D	testsuite/data/classifier/SVMOcas_0017_1en05_1_False.m
| A	testsuite/data/classifier/SVMOcas_0017_1en05_1_RAWDNA_1_False.m
| A	testsuite/data/classifier/SVMOcas_023_1en05_1_05_False.m
| D	testsuite/data/classifier/SVMOcas_023_1en05_1_False.m
| A	testsuite/data/classifier/SVMOcas_023_1en05_1_RAWDNA_1_False.m
| A	testsuite/data/classifier/SVMOcas_15_1en05_1_05_False.m
| D	testsuite/data/classifier/SVMOcas_15_1en05_1_False.m
| A	testsuite/data/classifier/SVMOcas_15_1en05_1_RAWDNA_1_False.m
| A	testsuite/data/classifier/SVMOcas_30_1en05_16_05_False.m
| D	testsuite/data/classifier/SVMOcas_30_1en05_16_False.m
| A	testsuite/data/classifier/SVMOcas_30_1en05_16_RAWDNA_1_False.m
| A	testsuite/data/classifier/SVMOcas_30_1en05_1_05_False.m
| D	testsuite/data/classifier/SVMOcas_30_1en05_1_False.m
| A	testsuite/data/classifier/SVMOcas_30_1en05_1_RAWDNA_1_False.m
|  
* commit 7abd7d9c2b8692ec957f615a2ff94d5c56ad6781
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 28 20:05:08 2009 +0000
| 
|     testsuite:
|     - Added WDFeatures to SVMOcas in modular interfaces.
| 
| M	testsuite/generator/classifier.py
| M	testsuite/generator/featop.py
| M	testsuite/octave-modular/util/globals.m
| M	testsuite/octave-modular/util/set_features.m
| M	testsuite/python-modular/util.py
| M	testsuite/r-modular/test_one.R
| M	testsuite/r-modular/util/get_features.R
|  
* commit 6122c6ad36458756051b747379124a46035097f0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 17:29:49 2009 +0000
| 
|     update NEWS
| 
| M	src/NEWS
|  
* commit 8f0676119e39b9398f049a7555093d871c79bb9b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 16:43:05 2009 +0000
| 
|     compile fix
| 
| M	src/features/DotFeatures.cpp
|  
* commit 235c3a916ab21808b85000c4c054581e4dcf4233
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 16:38:54 2009 +0000
| 
|     impl. method to obtain feature space
| 
| M	src/features/DotFeatures.cpp
| M	src/features/DotFeatures.h
| M	src/features/DotFeatures.i
|  
* commit 8ca4c9c3f9f1635f6fba119c8acd5a0604f2c0f5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 16:21:47 2009 +0000
| 
|     fix same bug also in implicit wd spec features
| 
| M	src/features/ImplicitWeightedSpecFeatures.cpp
|  
* commit ac2d3c4e976caa2527871642dde6aae9d66dd6d3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 16:19:40 2009 +0000
| 
|     fix crasher in WDFeatures and error: use from_degree again
| 
| M	src/features/WDFeatures.cpp
|  
* commit b51bcc825244f719c38b15d49a6cbc43f64fd1c1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 15:54:43 2009 +0000
| 
|     compile fixes related to ocas + bias
| 
| M	src/classifier/svm/SVMOcas.cpp
|  
* commit 7817a7e120c2b293458aeb2613bd58fb8d68d6f0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 15:37:32 2009 +0000
| 
|     bias 4
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMOcas.h
|  
* commit d1bb38aa5421f80c852cf410c351e41d3865da14
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 15:30:37 2009 +0000
| 
|     bias 3
| 
| M	src/classifier/svm/SVMOcas.cpp
|  
* commit e49bd2af6bc177562a98f9feeb56aa2f6a72c0f4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 15:28:02 2009 +0000
| 
|     bias 2
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMOcas.h
|  
* commit 903efe1f304c50929006c89422d5686e5c20aff9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 15:20:48 2009 +0000
| 
|     bias 1
| 
| M	src/classifier/svm/SVMOcas.cpp
|  
* commit 9e64e094b80d349e43a8e0e310463efbebcf1294
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 15:01:32 2009 +0000
| 
|     rename classes to remove C prefix
| 
| M	src/features/CombinedDotFeatures.i
| M	src/features/DotFeatures.i
| M	src/features/ExplicitSpecFeatures.i
| M	src/features/ImplicitWeightedSpecFeatures.i
| M	src/features/WDFeatures.i
|  
* commit 28e723053911b836d6b473f8ba06c9451ba5d4fd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 14:46:17 2009 +0000
| 
|     get printing functions right
| 
| M	src/classifier/svm/LibSVMOneClass.cpp
| M	src/classifier/svm/SVM_libsvm.cpp
|  
* commit a3e58a86d760685ca4e6c758b33efcec65f62a27
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 14:39:34 2009 +0000
| 
|     remove all printf based functions and replace them with appropriate SG_PRINT functions
| 
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVMMultiClass.cpp
| M	src/classifier/svm/LibSVMOneClass.cpp
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/interface/SGInterface.cpp
| M	src/lib/Trie.cpp
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/SVR_light.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
| M	src/structure/PlifArray.h
| M	src/structure/PlifBase.h
|  
* commit 1622214952b473578f69a39a882ec182471f67d2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 14:05:53 2009 +0000
| 
|     potential compile fix
| 
| M	src/classifier/svm/gmnpmkl.h
|  
* commit d7c7f6f0ad24cbc9e8b254163ead7985e2e761fc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 11:10:32 2009 +0000
| 
|     minor cleanup
| 
| M	src/features/ImplicitWeightedSpecFeatures.cpp
|  
* commit 76e09046c89679dd46562d1da20e056cf20aa9c7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 09:46:24 2009 +0000
| 
|     fix isntall/readme
| 
| M	src/INSTALL
| M	src/README
|  
* commit 698429eabc09c239ef80ef9e26c16336c7e09470
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 09:36:11 2009 +0000
| 
|     fix spelling
| 
| A	examples/python/graphical/svm_classification.py
| D	examples/python/graphical/svm_classificaton.py
|  
* commit d02b3a5b6d874fa8f75a331c3af5a4b1e4865101
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 09:06:44 2009 +0000
| 
|     don't use too many examples
| 
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
|  
* commit d765766cf577fde89b58aafb899c45f7e7c144e9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 09:04:50 2009 +0000
| 
|     use dual simplex/presolving and fix a memleak and wrong constraint for glpk-mkl
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 921eb37ad93c5b24b699d95200edd53323eca6fa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 27 18:32:52 2009 +0000
| 
|     add debug code to figure out what goes wrong when this assertion triggers
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/features/StringFeatures.h
|  
* commit 3f141923f6e7a118495783ed31a3947294aa8c4e
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Mon Jan 26 18:09:53 2009 +0000
| 
|     fixed a flaw in the demo: now for the testkernel the correct subkernel weights are set wihhc have been
|     learned by the mkl
| 
| M	examples/libshogun/gnmpmkltester.cpp
|  
* commit a53bd1a638eea95eb6caade10fb21d7a76e6e4cb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 25 20:38:08 2009 +0000
| 
|     disable progress output
| 
| M	src/features/DotFeatures.cpp
|  
* commit 72e10e4255c9e52f298fa9e4bb143acdf0ebf8ac
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 25 16:27:34 2009 +0000
| 
|     fix tppk bugs
| 
| M	src/interface/SGInterface.cpp
| M	src/kernel/Kernel.cpp
|  
* commit 80656b20c858ec3c8a6e38d2ba45cdfdafde8f80
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 25 12:32:10 2009 +0000
| 
|     add tppk test script
| 
| A	examples/matlab_and_octave/tests/test_tppk.m
|  
* commit a19530b340ed428de7a701f61fff2844e660ebb8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 25 11:53:28 2009 +0000
| 
|     fix a warning in getsumofsignfreealphas in multiclass MKL, update NEWS
| 
| M	src/NEWS
| M	src/classifier/svm/gmnpmkl.cpp
|  
* commit aa75c6bb959b16fcc3651cd3b747855fe806cedc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 25 11:46:46 2009 +0000
| 
|     implement tppk
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/interface/SGInterface.cpp
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/Kernel.i
| A	src/kernel/TensorProductPairKernel.cpp
| A	src/kernel/TensorProductPairKernel.h
| A	src/kernel/TensorProductPairKernel.i
|  
* commit 15657b4af69a52a2167bf72935f421137d76b7ee
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Fri Jan 23 21:01:06 2009 +0000
| 
|     moved testing routine from gnmpmkl{.h,.cpp} into examples
| 
| A	examples/libshogun/gnmpmkltester.cpp
| M	src/classifier/svm/gmnpmkl.cpp
| M	src/classifier/svm/gmnpmkl.h
|  
* commit 9c533adf82a707167924ecccff8c528d44fd156f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 23 11:57:51 2009 +0000
| 
|     minor code beatutifications, update NEWS and list of contributors
| 
| M	src/CONTRIBUTIONS
| M	src/NEWS
| M	src/classifier/svm/gmnpmkl.cpp
| M	src/classifier/svm/gmnpmkl.h
|  
* commit 90fd40dc93e572fb0a09c7251604623735cb9f3a
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Thu Jan 22 22:26:04 2009 +0000
| 
|     implemented GLPK-based L1 MKL for the multiclass svm GMNPSVM
| 
| M	src/classifier/Classifier.h
| M	src/classifier/svm/GMNPSVM.cpp
| M	src/classifier/svm/GMNPSVM.h
| A	src/classifier/svm/gmnpmkl.cpp
| A	src/classifier/svm/gmnpmkl.h
|  
* commit beb1127afa9e349561544e6494bda1cbfb615750
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 22 12:33:40 2009 +0000
| 
|     parallel output computation
| 
| M	src/classifier/LinearClassifier.cpp
| M	src/features/DotFeatures.cpp
| M	src/features/DotFeatures.h
|  
* commit 3885e5d2474c9731fe3d261e2dca97ff859e1a44
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 21 22:51:25 2009 +0000
| 
|     allow getting of subfeature weights
| 
| M	src/features/CombinedDotFeatures.cpp
| M	src/features/CombinedDotFeatures.h
| M	src/guilib/GUICommands.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 0e06fce4c29afa45090590240fb063ffccfe6897
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 21 19:13:44 2009 +0000
| 
|     let the wd feature space also use sqrt(weights) (to be symmetric and consisten with spec features) and
|     add a weight to each dotfeature object to allow weighting of the subfeatures of a combineddotfeature object
| 
| M	src/features/CombinedDotFeatures.cpp
| M	src/features/CombinedDotFeatures.h
| M	src/features/DotFeatures.h
| M	src/features/WDFeatures.cpp
| M	src/guilib/GUICommands.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 105b05e34669047f1f4e88169ca392cf6b523e48
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 21 12:52:33 2009 +0000
| 
|     implement normalization support for implicitwspecfeatures and modify weightedcommwords internal representation to be equivalent (breaks code that relies on the normal vector of the weightedcommwordstringkernel - but I guess nothing like this has been spotted in the wild yet)
| 
| M	src/features/ImplicitWeightedSpecFeatures.cpp
| M	src/features/ImplicitWeightedSpecFeatures.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
|  
* commit d2e61073946276575e1d9a4dcd2618b682ff25c0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 21 07:20:33 2009 +0000
| 
|     now add_todotfeatures works with WD/WSPEC
| 
| M	src/features/CombinedDotFeatures.cpp
| M	src/features/Features.cpp
| M	src/features/StringFeatures.h
| M	src/interface/SGInterface.cpp
|  
* commit fd408afd3916786a303552349b2897bf33ea8abe
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Jan 20 20:52:32 2009 +0000
| 
|     * disabled a few checks for set_WD_postion_weights_lhs and _rhs.
|     * now check whether lhs==rhs, and if so, then use position_weights_lhs instead of _rhs.
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
|  
* commit df32b5b76e6ee53959477a183d4a1054dfa9b751
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Jan 20 20:51:02 2009 +0000
| 
|     Don't understand the logic for set_WD_position_weights .. did not work for me.. fiddled around, but did not change anything
| 
| M	src/interface/SGInterface.cpp
|  
* commit 05b67c3d1057547463414b53d2c01a352d4f1f32
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Jan 20 20:48:18 2009 +0000
| 
|     abstract print function
| 
| M	src/structure/PlifBase.h
|  
* commit e605ae2ae9995327ffce33b091f340c7c6664a92
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Jan 20 20:47:54 2009 +0000
| 
|     print function
| 
| M	src/structure/Plif.h
|  
* commit ef3c5454915264293ed07ea4606e407f0fc8f170
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Jan 20 20:47:36 2009 +0000
| 
| M	src/structure/PlifArray.h
|  
* commit 51b82e60dbe3c97ee1afdca4f7f7b8e001c3255d
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Tue Jan 20 15:22:48 2009 +0000
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 3ba5413de98eb09fce36c98b9a1bf590a7df584b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 20 14:27:05 2009 +0000
| 
|     fix reading in string features < 1MB in size
| 
| M	src/features/StringFeatures.h
|  
* commit 4e4b833e8d04af2e39fecda257fe76eddb6c1513
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 20 12:50:59 2009 +0000
| 
|     change syntax to allow diverse features to be created from strings
| 
| M	examples/matlab_and_octave/wd_and_dot_features.m
| M	examples/matlab_and_octave/weighted_spec_features.m
| M	src/INSTALL
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 06b56406f9ac192943b60aef2fd8cd9b30108a6b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 20 08:53:29 2009 +0000
| 
|     compile fix
| 
| M	src/classifier/svm/SVM_light.h
|  
* commit ae8edbe353b828600f2cbf147fb393dfc874a4c2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 20 08:24:31 2009 +0000
| 
|     update glpk detection (include term_out test)
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/configure
|  
* commit 15840b43d7017766d5bfefab206d0e0ca6f2144d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 20 07:45:02 2009 +0000
| 
|     add examples on how to use dot features
| 
| A	examples/matlab_and_octave/wd_and_dot_features.m
| A	examples/matlab_and_octave/weighted_spec_features.m
|  
* commit 5fe900c64272a0a6de5b4d2ead53d1bb82d19f80
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 20 07:33:10 2009 +0000
| 
|     weighted spectrum features work now :)
| 
| M	src/NEWS
| M	src/features/ExplicitSpecFeatures.h
| M	src/features/Features.h
| M	src/features/ImplicitWeightedSpecFeatures.cpp
| M	src/features/ImplicitWeightedSpecFeatures.h
| M	src/features/StringFeatures.h
| M	src/interface/SGInterface.cpp
|  
* commit a6f4a63bfd0ccf73d2dd1dbd02c7827e27920a66
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Mon Jan 19 21:22:34 2009 +0000
| 
|     implemented Newton chunking MKL for q>1
|     seems to run stably and fast
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
|  
* commit f74703b8f590accda83c070301b6889702853409
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 19 16:46:39 2009 +0000
| 
|     WDFeatures do work now :)
| 
| M	src/features/ImplicitWeightedSpecFeatures.cpp
| M	src/features/WDFeatures.cpp
|  
* commit 24e1af1b90bf7b376450e9a4d88af54dc8ef154f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 19 14:16:14 2009 +0000
| 
|     Impl. of spec features is too memory demanding, rename to ExplicitSpecFeatures
|     and introduce ImplicitWeightedSpecFeatures for weighted spectrum kernel that
|     requires the same inputs as the weightedcommwordkernel but only 2x as much memory (not 2**8 times ...)
| 
| A	src/features/ExplicitSpecFeatures.cpp
| A	src/features/ExplicitSpecFeatures.h
| A	src/features/ExplicitSpecFeatures.i
| M	src/features/Features.i
| A	src/features/ImplicitWeightedSpecFeatures.cpp
| A	src/features/ImplicitWeightedSpecFeatures.h
| A	src/features/ImplicitWeightedSpecFeatures.i
| D	src/features/SpecFeatures.cpp
| D	src/features/SpecFeatures.h
| D	src/features/SpecFeatures.i
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
|  
* commit 56fe0f7d6eef319d6b211f30097f9271b950588f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 19 11:19:56 2009 +0000
| 
|     support standard spec kernel normalization
| 
| M	src/features/SpecFeatures.cpp
| M	src/features/SpecFeatures.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/interface/SGInterface.cpp
|  
* commit c33a950908a44437913f18a2ddd9a2b33e7db884
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 19 10:53:50 2009 +0000
| 
|     many (valgrind) fixes all over the place, Specfeatures work reliably now.
| 
| M	src/features/SpecFeatures.cpp
| M	src/features/SpecFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/WDFeatures.cpp
| M	src/features/WDFeatures.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIKernel.cpp
| M	src/interface/SGInterface.cpp
|  
* commit 74cb1e06eb4f518fdc332744c892e06863332d05
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 18 12:56:19 2009 +0000
| 
|     combined dot features work correctly now.
| 
| M	src/features/CombinedDotFeatures.cpp
| M	src/features/CombinedDotFeatures.h
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/guilib/GUICommands.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit cda97c644168db5a6e5655993dc6440b08d31037
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 17 11:05:25 2009 +0000
| 
|     implement dense_dot_range and remove the now obsolete function from sparse features - suddenly linear svms work again ;)
| 
| M	src/features/DotFeatures.cpp
| M	src/features/DotFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
|  
* commit c6d96d4ea64c7d06da1762d8188d3370d1378d1b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 17:21:56 2009 +0000
| 
|     fix typo in configure, for disable glpk
| 
| M	src/configure
|  
* commit 920c20c15a451fb1fe1cb699a482ea49253e8447
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 17:20:20 2009 +0000
| 
|     compile fix
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit bc1ecaf0580a07a57200ce4b32b0b3bc914fe51f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 17:10:27 2009 +0000
| 
|     remove some cruft, fix a warning
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/interface/OctaveInterface.cpp
|  
* commit 048b61c02b43e7754ec453a5abef900b02d5bfe2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 14:24:19 2009 +0000
| 
|     write out which solver is taken when (for debugging) and use logsum to stabilize alex's qnorm mkl (doesn't seem to help...)
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/lib/Mathematics.h
|  
* commit 2a2e884359fd926265ef50e498f8253e1448e7a6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 12:07:11 2009 +0000
| 
|     workaround bug in matlab logicals handling
| 
| M	src/interface/MatlabInterface.cpp
|  
* commit 297b1ff3d44965310a5dc6a3c9c042ab3724a1d2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 11:53:59 2009 +0000
| 
|     obtain boolean value for floats for octave too
| 
| M	src/interface/OctaveInterface.cpp
|  
* commit e5f887e33d95cbc35237c3d3d1b482b8b154c47b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 11:35:53 2009 +0000
| 
|     improve logic when which solver is used, compute obj in glpk based on new betas
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 9f11d5a817b922ebe3abc4f56229ffb0e28c3eba
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 11:15:12 2009 +0000
| 
|     fix examples and update NEWS
| 
| M	examples/matlab_and_octave/graphical/test_spec_interp.m
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
| M	examples/matlab_and_octave/mkl_regression_3sine_waves.m
| M	examples/matlab_and_octave/mkl_regression_sine.m
| M	src/NEWS
|  
* commit 75bd427cfd05e559cbaa46292b2c6855c0cecc6d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 11:14:20 2009 +0000
| 
|     fix compilation w/ cplex
| 
| M	src/regression/svr/SVR_light.cpp
|  
* commit ba3bdd229bc86b00558ac617b6be9039df3d1803
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 11:04:20 2009 +0000
| 
|     GLPK support for 1-norm MKL based on code from Chen Guohua
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
|  
* commit d5e95d61d78fb6d92dd0c34522ff48364ee511bc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 09:44:23 2009 +0000
| 
|     further remove code duplication
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/regression/svr/SVR_light.cpp
|  
* commit f9fcdc5541adc80756e78c1d3e2de7b3a1bdcd7b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 08:25:22 2009 +0000
| 
|     factor out mkl into separate functions (to avoid code duplication) and use these functions for linadd and vanilla kernels
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/regression/svr/SVR_light.cpp
|  
* commit c46767a0489a5adb483ae648f271af5dc63115c6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 15 21:47:47 2009 +0000
| 
|     this adds an option to select the solver type on the fly (cplex/glpk/internal/auto)
| 
| M	src/classifier/Classifier.cpp
| M	src/classifier/Classifier.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUICommands.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit b1866a1ddc27c6c46d7857c25745de5d2e86cbc0
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Jan 15 18:59:30 2009 +0000
| 
|     compiles and works again in slightly more modularized version
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 91b6a8aa7ffac1936c60db9a9cb199ef1a941cd1
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Jan 15 18:44:15 2009 +0000
| 
|     fix example
| 
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
|  
* commit 659530140b309ace8b052e030570c436c0efe53d
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Jan 15 18:32:31 2009 +0000
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit f962045836e72afe2ad193090d7a6ea287c0aa0d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 15 18:25:07 2009 +0000
| 
|     potentially integrate alex's q-norm mkl solver
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
|  
* commit 31c1a188a790cb8a772d59c0eee80d547f45ae2f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 15 18:03:31 2009 +0000
| 
|     magic reordering potentially fixes convergence
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 9741e7a047088f3f2d45a4d11d2ca97c922285c6
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Jan 15 18:00:55 2009 +0000
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
|  
* commit 7fc68d173f76d892a27467f579961239edae8658
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 15 15:56:31 2009 +0000
| 
|     with debug code
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit a2f16b7758368dd3b957e9100d702383b529ca07
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 15 15:39:02 2009 +0000
| 
|     minor fix
| 
| M	src/features/Features.h
| M	src/features/SpecFeatures.cpp
| M	src/features/SpecFeatures.h
| M	src/features/WDFeatures.cpp
| M	src/features/WDFeatures.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/interface/SGInterface.cpp
|  
* commit 50dbb3a210be71826b71f3739b83d46479d1efb7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 15 11:44:23 2009 +0000
| 
|     fix copy&paste input corruption bug in octave static and modular interfaces
|     occurring only with int32/int16 matrices/vectors (used in functions such as
|     from_position_list!)
| 
| M	src/interface/OctaveInterface.cpp
| M	src/lib/octave_typemaps.i
|  
* commit f2298f5a8baef76b6b1bf197bc985c281db68f29
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 14 22:44:44 2009 +0000
| 
|     minor formatting change
| 
| M	src/configure
|  
* commit 0eb37148c0865327250ad8406691c29f7067387e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 14 18:55:05 2009 +0000
| 
|     potentially complete implementation of WD/SpecFeatures
| 
| M	src/features/SpecFeatures.cpp
| M	src/features/SpecFeatures.h
| M	src/features/WDFeatures.cpp
| M	src/features/WDFeatures.h
|  
* commit cc928598c374359eae7c3cc95a7e00ac08dba64b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 13 20:55:48 2009 +0000
| 
|     continue on WDFeatures
| 
| M	src/features/DotFeatures.h
| M	src/features/DotFeatures.i
| M	src/features/Features.i
| A	src/features/SpecFeatures.i
| M	src/features/WDFeatures.cpp
| M	src/features/WDFeatures.i
| M	src/guilib/GUIClassifier.cpp
|  
* commit daf6b3a0d726cce2d9edc6e68d5b30a709a84e7e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 13 10:59:09 2009 +0000
| 
|     Implement spec features. also as dot features are not really a feature class,
|     but more features with a dot property, start implementing feature
|     properties (similar to kernel properties).
| 
| M	src/distance/Distance.cpp
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/features/SimpleFeatures.h
| M	src/features/SpecFeatures.cpp
| M	src/features/SpecFeatures.h
| M	src/features/WDFeatures.cpp
| M	src/features/WDFeatures.h
| M	src/kernel/Kernel.h
| M	src/lib/common.h
|  
* commit 8708e8791f7fcc096da5ad8b370ccde9dfd0e537
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jan 12 22:42:46 2009 +0000
| 
|     - Updated NEWS.
| 
| M	src/NEWS
|  
* commit b56a81f95e8b5b0be8b4ce0ddfd12292d757d764
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 12 19:57:26 2009 +0000
| 
|     - fix compilation when cplex is not available
|     - use Math_init_random(as.integer(1.0)) in test r-modular test suite (required for swig 1.3.37)
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	testsuite/r-modular/test_one.R
|  
* commit 0bbb5c989e8f1697d18294882828008ec0224c5a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 12 16:59:49 2009 +0000
| 
|     update NEWS
| 
| M	src/NEWS
|  
* commit 44b465d90046cb12c824875e7c5d7217bc6b399a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 12 16:50:13 2009 +0000
| 
|     q-norm mkl for linadd based kernels
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/lib/Mathematics.h
|  
* commit f61328819170950ab0ffd1ce8f10063c36daf164
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 12 16:05:02 2009 +0000
| 
|     fix convergence criterion, add constraint removal
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 9f7eeb8cfc522a16ad8798cc08ed3c81708a432c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 12 14:21:37 2009 +0000
| 
|     remove debug code
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit fccb6fa8e9cc79f60bc0af5c26ef401bb81fca58
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 12 14:06:31 2009 +0000
| 
|     add q-norm mkl
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/lib/Mathematics.h
|  
* commit 1f7aff92333d50b6dbdad2464e744d86c334a3fa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 9 23:09:13 2009 +0000
| 
|     uint8 should be uint16
| 
| M	src/features/SpecFeatures.cpp
| M	src/features/SpecFeatures.h
|  
* commit fd91cbb23a0874ed5889e51a45c1c26400410cf1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 9 18:48:36 2009 +0000
| 
|     testsuite:
|     - Another attempt at getting WDSVMOcas to work. Static interfaces seem
|       troublesome.
| 
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/test_one.sh
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_features.m
| M	testsuite/python-modular/util.py
| M	testsuite/python/util.py
|  
* commit 28c14d3437f28c4827d5830e568f61f8a75b141d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 9 18:19:10 2009 +0000
| 
|     testsuite:
|     - Data files for WDSVMOcas have changed (and bugger SubGradient).
| 
| M	testsuite/data/classifier/SubGradientSVM_023_1en05_1_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_15_1en05_1_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_30_1en05_16_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_30_1en05_1_05_False.m
| A	testsuite/data/classifier/WDSVMOcas_0017_1en05_1_1_RAWDNA_1_0_False_60_False.m
| D	testsuite/data/classifier/WDSVMOcas_0017_1en05_1_1_RAWDNA_60_False.m
| A	testsuite/data/classifier/WDSVMOcas_023_1en05_1_1_RAWDNA_1_0_False_60_False.m
| D	testsuite/data/classifier/WDSVMOcas_023_1en05_1_1_RAWDNA_60_False.m
| A	testsuite/data/classifier/WDSVMOcas_15_1en05_1_1_RAWDNA_1_0_False_60_False.m
| D	testsuite/data/classifier/WDSVMOcas_15_1en05_1_1_RAWDNA_60_False.m
| A	testsuite/data/classifier/WDSVMOcas_30_1en05_16_1_RAWDNA_1_0_False_60_False.m
| D	testsuite/data/classifier/WDSVMOcas_30_1en05_16_1_RAWDNA_60_False.m
| A	testsuite/data/classifier/WDSVMOcas_30_1en05_1_1_RAWDNA_1_0_False_60_False.m
| D	testsuite/data/classifier/WDSVMOcas_30_1en05_1_1_RAWDNA_60_False.m
|  
* commit e7089df61e3f27d9b6f6774814dc7491dee1b042
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 9 18:18:39 2009 +0000
| 
|     testsuite:
|     - Features for WDSVMOcas are created and handled differently now.
| 
| M	testsuite/generator/classifier.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/featop.py
|  
* commit 25624be5bb5d3fbaea5c4d52fecd86701a858ece
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 9 18:01:48 2009 +0000
| 
|     work in progress checkin for wdfeatures/specfeatures
| 
| A	src/features/SpecFeatures.cpp
| A	src/features/SpecFeatures.h
| M	src/features/WDFeatures.cpp
|  
* commit b5e24f0f9079a97c0de80e1517ea0da79ae13ad8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 9 17:57:05 2009 +0000
| 
|     try to be clever when converting DNA to binary formats and select RAWDNA as target type
| 
| M	src/guilib/GUIFeatures.h
|  
* commit f3333c7c5310628de8b3588bcb2b99f224f2eb5b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 9 17:34:48 2009 +0000
| 
|     testsuite:
|     - It seems that removal of tube_epsilon in matlab/octave was overlooked in
|       previous check-in.
| 
| M	testsuite/matlab_and_octave/classifier.m
|  
* commit 0f7ddf14c43961a2a24e0ba8d6ef45370153db49
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 9 16:48:23 2009 +0000
| 
|     add support for sg('convert', 'TRAIN', 'STRING', 'CHAR', 'STRING', 'BYTE') and remove some cruft from GUIFeatures
| 
| M	src/guilib/GUIFeatures.h
| M	src/interface/SGInterface.cpp
|  
* commit 277fbe4b3f7d783ad19b0519c8a4f8821fdc14a2
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 9 16:05:57 2009 +0000
| 
|     examples:
|     - Removed tube_epsilon from classifiers.
| 
| M	examples/octave-modular/all_classifier.m
| M	examples/python-modular/all_classifier.py
| M	examples/r-modular/all_classifier.R
|  
* commit a15c0184425f56feb9a286132ce5fdb013a349c3
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 9 16:01:00 2009 +0000
| 
|     testsuite:
|     - Previous commit resulted in changes to data files.
| 
| D	testsuite/data/classifier/GMNPSVM_0017_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_0017_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_023_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_15_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_1en05_16_15_0001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_1en05_1_15_0001_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GPBTSVM_0017_1en05_1_001_Linear.m
| D	testsuite/data/classifier/GPBTSVM_0017_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_0017_1en05_1_15_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_0017_1en05_1_Linear.m
| D	testsuite/data/classifier/GPBTSVM_023_1en05_1_001_Linear.m
| D	testsuite/data/classifier/GPBTSVM_023_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_023_1en05_1_15_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_023_1en05_1_Linear.m
| D	testsuite/data/classifier/GPBTSVM_15_1en05_1_001_Linear.m
| D	testsuite/data/classifier/GPBTSVM_15_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_15_1en05_1_15_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_15_1en05_1_Linear.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_CommUlongString_0_3_DNA_30_16_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_CommUlongString_0_3_DNA_30_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_CommWordString_0_3_DNA_30_16_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_CommWordString_0_3_DNA_30_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_True_60_DNA_30_16_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_True_60_DNA_30_16_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_True_60_DNA_30_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_True_60_DNA_30_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreePositionString_DNA_30_16_20_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreePositionString_DNA_30_16_20_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreePositionString_DNA_30_1_20_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreePositionString_DNA_30_1_20_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreeString_DNA_30_16_3_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreeString_DNA_30_16_3_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreeString_DNA_30_1_3_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreeString_DNA_30_1_3_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_CommUlongString_0_3_DNA_0017_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_CommUlongString_0_3_DNA_023_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_CommUlongString_0_3_DNA_15_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_CommUlongString_0_3_DNA_30_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_CommWordString_0_3_DNA_0017_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_CommWordString_0_3_DNA_023_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_CommWordString_0_3_DNA_15_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_CommWordString_0_3_DNA_30_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_0017_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_0017_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_023_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_023_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_15_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_15_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_30_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_30_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_0017_1_20_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_0017_1_20_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_023_1_20_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_023_1_20_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_15_1_20_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_15_1_20_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_30_1_20_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_30_1_20_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_0017_1_3_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_0017_1_3_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_023_1_3_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_023_1_3_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_15_1_3_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_15_1_3_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_30_1_3_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_30_1_3_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_CommUlongString_0_3_DNA_0017_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_CommUlongString_0_3_DNA_023_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_CommUlongString_0_3_DNA_15_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_CommUlongString_0_3_DNA_30_16_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_CommUlongString_0_3_DNA_30_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_CommWordString_0_3_DNA_0017_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_CommWordString_0_3_DNA_023_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_CommWordString_0_3_DNA_15_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_CommWordString_0_3_DNA_30_16_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_CommWordString_0_3_DNA_30_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_0017_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_0017_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_023_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_023_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_15_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_15_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_30_16_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_30_16_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_30_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_30_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_0017_1_20_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_0017_1_20_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_023_1_20_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_023_1_20_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_15_1_20_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_15_1_20_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_30_16_20_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_30_16_20_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_30_1_20_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_30_1_20_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_0017_1_3_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_0017_1_3_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_023_1_3_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_023_1_3_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_15_1_3_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_15_1_3_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_30_16_3_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_30_16_3_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_30_1_3_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_30_1_3_60_True.m
| D	testsuite/data/classifier/GPBTSVM_30_1en05_16_0001_Linear.m
| D	testsuite/data/classifier/GPBTSVM_30_1en05_16_15_0001_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_30_1en05_16_15_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_30_1en05_16_Linear.m
| D	testsuite/data/classifier/GPBTSVM_30_1en05_1_0001_Linear.m
| D	testsuite/data/classifier/GPBTSVM_30_1en05_1_001_Linear.m
| D	testsuite/data/classifier/GPBTSVM_30_1en05_1_15_0001_Gaussian.m
| D	testsuite/data/classifier/GPBTSVM_30_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_30_1en05_1_15_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_30_1en05_1_Linear.m
| D	testsuite/data/classifier/LibSVMMultiClass_0017_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_0017_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_023_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_15_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_1en05_16_15_0001_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_1en05_1_15_0001_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_0017_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVMOneClass_0017_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_023_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVMOneClass_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_15_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVMOneClass_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_30_1en05_16_15_0001_Gaussian.m
| A	testsuite/data/classifier/LibSVMOneClass_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_30_1en05_1_15_0001_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_30_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVMOneClass_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVM_0017_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVM_0017_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVM_023_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVM_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVM_15_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVM_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVM_30_1en05_16_15_0001_Gaussian.m
| A	testsuite/data/classifier/LibSVM_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/LibSVM_30_1en05_1_15_0001_Gaussian.m
| D	testsuite/data/classifier/LibSVM_30_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVM_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/MPDSVM_0017_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/MPDSVM_0017_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/MPDSVM_023_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/MPDSVM_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/MPDSVM_15_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/MPDSVM_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/MPDSVM_30_1en05_16_15_0001_Gaussian.m
| A	testsuite/data/classifier/MPDSVM_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/MPDSVM_30_1en05_1_15_0001_Gaussian.m
| D	testsuite/data/classifier/MPDSVM_30_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/MPDSVM_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/SVMLight_0017_1en05_1_001_Linear.m
| D	testsuite/data/classifier/SVMLight_0017_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/SVMLight_0017_1en05_1_15_Gaussian.m
| A	testsuite/data/classifier/SVMLight_0017_1en05_1_Linear.m
| D	testsuite/data/classifier/SVMLight_023_1en05_1_001_Linear.m
| D	testsuite/data/classifier/SVMLight_023_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/SVMLight_023_1en05_1_15_Gaussian.m
| A	testsuite/data/classifier/SVMLight_023_1en05_1_Linear.m
| D	testsuite/data/classifier/SVMLight_15_1en05_1_001_Linear.m
| D	testsuite/data/classifier/SVMLight_15_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/SVMLight_15_1en05_1_15_Gaussian.m
| A	testsuite/data/classifier/SVMLight_15_1en05_1_Linear.m
| D	testsuite/data/classifier/SVMLight_1en05_0001_CommUlongString_0_3_DNA_30_16_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_0001_CommUlongString_0_3_DNA_30_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_0001_CommWordString_0_3_DNA_30_16_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_0001_CommWordString_0_3_DNA_30_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_0001_True_60_DNA_30_16_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_0001_True_60_DNA_30_16_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_0001_True_60_DNA_30_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_0001_True_60_DNA_30_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_0001_WeightedDegreePositionString_DNA_30_16_20_60.m
| D	testsuite/data/classifier/SVMLight_1en05_0001_WeightedDegreePositionString_DNA_30_16_20_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_0001_WeightedDegreePositionString_DNA_30_1_20_60.m
| D	testsuite/data/classifier/SVMLight_1en05_0001_WeightedDegreePositionString_DNA_30_1_20_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_0001_WeightedDegreeString_DNA_30_16_3_60.m
| D	testsuite/data/classifier/SVMLight_1en05_0001_WeightedDegreeString_DNA_30_16_3_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_0001_WeightedDegreeString_DNA_30_1_3_60.m
| D	testsuite/data/classifier/SVMLight_1en05_0001_WeightedDegreeString_DNA_30_1_3_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_CommUlongString_0_3_DNA_0017_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_001_CommUlongString_0_3_DNA_023_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_001_CommUlongString_0_3_DNA_15_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_001_CommUlongString_0_3_DNA_30_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_001_CommWordString_0_3_DNA_0017_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_001_CommWordString_0_3_DNA_023_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_001_CommWordString_0_3_DNA_15_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_001_CommWordString_0_3_DNA_30_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_001_True_60_DNA_0017_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_True_60_DNA_0017_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_True_60_DNA_023_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_True_60_DNA_023_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_True_60_DNA_15_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_True_60_DNA_15_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_True_60_DNA_30_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_True_60_DNA_30_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_0017_1_20_60.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_0017_1_20_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_023_1_20_60.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_023_1_20_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_15_1_20_60.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_15_1_20_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_30_1_20_60.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_30_1_20_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_0017_1_3_60.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_0017_1_3_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_023_1_3_60.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_023_1_3_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_15_1_3_60.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_15_1_3_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_30_1_3_60.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_30_1_3_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_CommUlongString_0_3_DNA_0017_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_CommUlongString_0_3_DNA_023_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_CommUlongString_0_3_DNA_15_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_CommUlongString_0_3_DNA_30_16_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_CommUlongString_0_3_DNA_30_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_CommWordString_0_3_DNA_0017_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_CommWordString_0_3_DNA_023_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_CommWordString_0_3_DNA_15_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_CommWordString_0_3_DNA_30_16_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_CommWordString_0_3_DNA_30_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_0017_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_0017_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_023_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_023_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_15_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_15_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_30_16_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_30_16_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_30_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_30_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_0017_1_20_60.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_0017_1_20_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_023_1_20_60.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_023_1_20_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_15_1_20_60.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_15_1_20_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_30_16_20_60.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_30_16_20_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_30_1_20_60.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_30_1_20_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_0017_1_3_60.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_0017_1_3_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_023_1_3_60.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_023_1_3_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_15_1_3_60.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_15_1_3_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_30_16_3_60.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_30_16_3_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_30_1_3_60.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_30_1_3_60_True.m
| D	testsuite/data/classifier/SVMLight_30_1en05_16_0001_Linear.m
| D	testsuite/data/classifier/SVMLight_30_1en05_16_15_0001_Gaussian.m
| A	testsuite/data/classifier/SVMLight_30_1en05_16_15_Gaussian.m
| A	testsuite/data/classifier/SVMLight_30_1en05_16_Linear.m
| D	testsuite/data/classifier/SVMLight_30_1en05_1_0001_Linear.m
| D	testsuite/data/classifier/SVMLight_30_1en05_1_001_Linear.m
| D	testsuite/data/classifier/SVMLight_30_1en05_1_15_0001_Gaussian.m
| D	testsuite/data/classifier/SVMLight_30_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/SVMLight_30_1en05_1_15_Gaussian.m
| A	testsuite/data/classifier/SVMLight_30_1en05_1_Linear.m
| M	testsuite/data/classifier/SubGradientSVM_0017_1en05_1_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_15_1en05_1_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_30_1en05_16_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_30_1en05_1_05_False.m
|  
* commit 6ecc29af6a53ea03c7905511513d69396d85db3b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 9 15:57:24 2009 +0000
| 
|     testsuite:
|     - Removed tube_epsilon from classifiers.
| 
| M	testsuite/generator/classifier.py
| M	testsuite/octave-modular/classifier.m
| M	testsuite/python-modular/classifier.py
| M	testsuite/python/classifier.py
| M	testsuite/python/util.py
| M	testsuite/r-modular/classifier.R
| M	testsuite/r/classifier.R
|  
* commit 6fdbe9216308dcfb8afbf376f0d6a98c5689ab03
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 9 15:48:40 2009 +0000
| 
|     enable general norm support - interface side only
| 
| M	src/classifier/svm/SVM.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
|  
* commit 71182a7efce53f1bc9ca5498bd4ee35716fb8f1e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 9 15:47:13 2009 +0000
| 
|     fix crasher with comm* kernel
| 
| M	src/guilib/GUIKernel.cpp
|  
* commit b33589d09bae8158f8238837059d7a0c53015b26
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 9 12:56:03 2009 +0000
| 
|     fix type check, test suite for octave/python-modular runs through, commword kernel fix requires re-generation of test
| 
| M	src/guilib/GUIClassifier.cpp
|  
* commit ebb65ba21abad7bb3dcdd48a1a101a4d9e61cbb8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 9 12:18:15 2009 +0000
| 
|     merge SparseLinearClassifier.i into LinearClassifier.i
| 
| M	src/classifier/LinearClassifier.i
|  
* commit a81790c22d9e9fb9137c42df746bdc598dcebca1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 9 11:55:07 2009 +0000
| 
|     Integrate new DotFeatures into existing linear classifiers
| 
| M	src/NEWS
| M	src/classifier/Classifier.i
| M	src/classifier/LDA.cpp
| M	src/classifier/LDA.h
| M	src/classifier/LPBoost.cpp
| M	src/classifier/LPBoost.h
| M	src/classifier/LPM.cpp
| M	src/classifier/LPM.h
| M	src/classifier/LinearClassifier.cpp
| M	src/classifier/LinearClassifier.h
| M	src/classifier/Perceptron.cpp
| M	src/classifier/Perceptron.h
| D	src/classifier/SparseLinearClassifier.cpp
| D	src/classifier/SparseLinearClassifier.h
| D	src/classifier/SparseLinearClassifier.i
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/SubGradientLPM.h
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/LibLinear.h
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMLin.h
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMOcas.h
| M	src/classifier/svm/SVMSGD.cpp
| M	src/classifier/svm/SVMSGD.h
| M	src/classifier/svm/SVM_linear.cpp
| M	src/classifier/svm/SVM_linear.h
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/ssl.cpp
| M	src/classifier/svm/ssl.h
| M	src/configure
| M	src/distributions/hmm/HMM.h
| M	src/features/CombinedDotFeatures.cpp
| M	src/features/CombinedDotFeatures.h
| M	src/features/CombinedDotFeatures.i
| M	src/features/DotFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/WDFeatures.cpp
| M	src/features/WDFeatures.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/interface/SGInterface.cpp
| M	src/lib/List.h
|  
* commit 53a718488c4ea0a255398a2b7a248e807da739ed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 8 17:40:34 2009 +0000
| 
|     started work on WDFeatures + several bugfixes in combineddotfeatures
| 
| M	src/features/CombinedDotFeatures.cpp
| M	src/features/CombinedDotFeatures.h
| M	src/features/StringFeatures.h
| A	src/features/WDFeatures.cpp
| A	src/features/WDFeatures.h
| A	src/features/WDFeatures.i
|  
* commit 053bdb4cfc077bdb815efcd6cc02645a48b40950
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 8 14:29:01 2009 +0000
| 
|     Implement combined dot features and dot features for simple and sparse features.
|     
|     This required a hierarchy change: simple and sparse features are now derived
|     from dot features (which in turn derive form features). combined dot features
|     use copy & paste code from combined features to avoid multiple inheritance (bad
|     		bad diamonds, and dynamic_cast<CRealFeatures>(feat) is #$*Y#$%(%Y&!!!)
|     
|     None of this is tested yet. Still TODO:
|     
|     - integrate into linear classfiers/kernels
|     - implement wd/spec features
|     
|     Not compile tested under any except the cmdline interface.
| 
| A	src/features/CombinedDotFeatures.cpp
| M	src/features/CombinedDotFeatures.h
| A	src/features/CombinedDotFeatures.i
| A	src/features/DotFeatures.cpp
| M	src/features/DotFeatures.h
| A	src/features/DotFeatures.i
| M	src/features/Features.h
| M	src/features/Features.i
| M	src/features/RealFeatures.cpp
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/lib/Mathematics.h
|  
* commit 2e5fe2e65cffea6d6936af42a6890d99c8b7e2e3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 5 09:44:58 2009 +0000
| 
|     prototyping of new dotfeatures and combineddotfeatures
| 
| A	src/features/CombinedDotFeatures.h
| A	src/features/DotFeatures.h
| M	src/features/Features.h
|  
* commit f2faba15ce2607512e44ae3d3e4d07379ea5afb2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 30 11:16:48 2008 +0000
| 
|     check for SVR before setting tube epsilon
| 
| M	examples/cmdline/all_regression.sg
| M	src/guilib/GUIClassifier.cpp
|  
* commit 316e57b4c88997f30cd5bdcd27f86a1a12d68a1c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 30 11:15:47 2008 +0000
| 
|     don't create the array on the stack
| 
| M	src/structure/DynProg.cpp
|  
* commit a5ad2313db627fe24884641e54c824800b83ca3f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 30 09:42:56 2008 +0000
| 
|     sign also cmds
| 
| M	src/configure
|  
* commit effc34527cbb6b031b3e21f7d3c2a94327cae073
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 30 09:29:58 2008 +0000
| 
|     add iphone detection in configure / and sign binary
| 
| M	src/Makefile
| M	src/configure
|  
* commit 54790e18e11fa91281ddee349466d621724e144b
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Dec 30 08:39:28 2008 +0000
| 
| M	src/base/SGObject.h
| M	src/base/Version.h
|  
* commit 680ca50be0d0f20abbad7a1a71854a28ed726442
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Dec 30 08:35:49 2008 +0000
| 
|     minor change for Mac OS and iPhone OS
| 
| M	src/lib/Mathematics.h
|  
* commit 358f6947a08a76db2330d8c19d36299268b4a1c9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 27 21:34:38 2008 +0000
| 
|     remove unused includes, fixes a crasher occurring with long obsolete matlab versions
| 
| M	src/kernel/OligoKernel.cpp
| M	src/kernel/OligoKernel.h
|  
* commit 05526ed37ffc4ada819814a12df7293c6c0173cc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 13 08:03:06 2008 +0000
| 
|     build static libshogun.a for libshogun target
| 
| M	src/Makefile
|  
* commit 928c1b20d45902e609e854b0e2bb1bb0ec03c41d
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Dec 11 15:12:31 2008 +0000
| 
|     -- changes of structure branche merged back into trunk
|     -- function best_path_call restored
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit a6627d431d937eafa69cf0b1104e6464daa5f7a5
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 9 20:35:22 2008 +0000
| 
|     testsuite:
|     - Added OligoKernel to testers (python testers worked automatically).
| 
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_kernel.m
| M	testsuite/octave-modular/util/globals.m
| M	testsuite/octave-modular/util/set_kernel.m
| M	testsuite/r-modular/util/get_kernel.R
| M	testsuite/r/util/set_kernel.R
|  
* commit 9bc7fe8625ebc93530104276715967b4d95fc247
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 9 20:34:26 2008 +0000
| 
|     testsuite:
|     - Added OligoKernel to generator, including data files.
| 
| A	testsuite/data/kernel/Oligo_DNA_10_3_60_12.m
| A	testsuite/data/kernel/Oligo_DNA_10_4_60_17.m
| M	testsuite/generator/kernel.py
|  
* commit 616c095129fbd4cb9b6058993883ac29bd93a525
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 9 20:11:52 2008 +0000
| 
|     testsuite:
|     - Implemented a bit of code to skip WDSVMOcas in all interfaces != python.
| 
| M	testsuite/matlab_and_octave/test_one.sh
| M	testsuite/octave-modular/test_one.sh
| M	testsuite/r-modular/test_all.sh
| M	testsuite/r-modular/test_one.sh
| M	testsuite/r/test_all.sh
| M	testsuite/r/test_one.sh
|  
* commit 8eee5e3bc4a5043a73b894f3b762b5d2544456ec
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 9 17:21:54 2008 +0000
| 
|     testsuite:
|     - Added 'support' (conversion from StringChar to StringByte not possible yet)
|       for WDSVMOcas to python static.
| 
| M	testsuite/python/test_one.py
| M	testsuite/python/util.py
|  
* commit 58d40bb94e1a11560dc4933f9e37376d66b05ce9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 9 16:50:28 2008 +0000
| 
|     interface:
|     - Fixed compiling issue on normalization of CommString kernels.
| 
| M	src/guilib/GUIKernel.cpp
|  
* commit 063d35cdf221b42d9088cc97789a3fc8e0a58993
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 8 21:29:33 2008 +0000
| 
|     testsuite:
|     - Added support for WDSVMOcas in tester for python modular.
| 
| M	testsuite/python-modular/classifier.py
| M	testsuite/python-modular/test_one.py
| M	testsuite/python-modular/util.py
|  
* commit fe3d4350c2b8094e9b8e6f2c9dd55d77de117433
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 8 21:28:42 2008 +0000
| 
|     testsuite:
|     - Added data files for WDSVMOcas.
| 
| M	testsuite/data/classifier/SubGradientSVM_0017_1en05_1_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_30_1en05_16_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_30_1en05_1_05_False.m
| A	testsuite/data/classifier/WDSVMOcas_0017_1en05_1_1_RAWDNA_60_False.m
| A	testsuite/data/classifier/WDSVMOcas_023_1en05_1_1_RAWDNA_60_False.m
| A	testsuite/data/classifier/WDSVMOcas_15_1en05_1_1_RAWDNA_60_False.m
| A	testsuite/data/classifier/WDSVMOcas_30_1en05_16_1_RAWDNA_60_False.m
| A	testsuite/data/classifier/WDSVMOcas_30_1en05_1_1_RAWDNA_60_False.m
|  
* commit 636cfae937093c0dd785b76485c6c72d1b8b4c6d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 8 21:28:10 2008 +0000
| 
|     testsuite:
|     - Included WDSVMOcas in generator (a bit hacky though).
| 
| M	testsuite/generator/classifier.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/fileop.py
|  
* commit c51571f3ff10569c300c152d6c39baa7cad94265
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 8 17:31:39 2008 +0000
| 
|     examples:
|     - Patch for R in swig which removed integer coercion requires the introduction
|       of more coercions into the examples for R modular.
| 
| M	examples/r-modular/all_classifier.R
| M	examples/r-modular/all_clustering.R
| M	examples/r-modular/all_distance.R
| M	examples/r-modular/all_distribution.R
| M	examples/r-modular/all_kernels.R
| M	examples/r-modular/all_preproc.R
| M	examples/r-modular/all_regression.R
| M	examples/r-modular/check.sh
|  
* commit 0a82e33bfeca96b06a874ffba6106ad26e026a0c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 8 00:05:33 2008 +0000
| 
|     fix regression for COMM* kernels: normalization argument was ignored
| 
| M	src/guilib/GUIKernel.cpp
|  
* commit 697e3ce7dd4dcc8c001a76353c2077b22bd0ac0b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 7 21:26:20 2008 +0000
| 
|     testsuite:
|     - Fixed typo in tester for octave modular.
| 
| M	testsuite/octave-modular/classifier.m
|  
* commit 4174346504e31e559979bf614c8a977777396030
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 7 21:25:46 2008 +0000
| 
|     testsuite:
|     - Added regression and classifier to tests for R modular.
| 
| A	testsuite/r-modular/classifier.R
| M	testsuite/r-modular/regression.R
|  
* commit d43dd69940db164662ffe8ed04349223dd0d9a4a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Dec 5 22:55:24 2008 +0000
| 
|     testsuite:
|     - Added tester for kernel and preproc in R modular.
| 
| M	testsuite/r-modular/clustering.R
| M	testsuite/r-modular/distance.R
| A	testsuite/r-modular/distribution.R
| A	testsuite/r-modular/kernel.R
| A	testsuite/r-modular/preproc.R
| M	testsuite/r-modular/util/check_accuracy.R
| M	testsuite/r-modular/util/get_features.R
| M	testsuite/r-modular/util/get_kernel.R
| A	testsuite/r-modular/util/get_pie.R
| A	testsuite/r-modular/util/get_posneg.R
|  
* commit d23a05d3a0aa5e5597bfcc577a1e29acd02c1fd3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 5 08:00:24 2008 +0000
| 
|     hopefully removed all occurences of variable length arrays and log/pow calls
| 
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/libocas_common.h
| M	src/clustering/KMeans.cpp
| M	src/distributions/histogram/Histogram.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/interface/SGInterface.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/regression/svr/SVR_light.cpp
| M	src/structure/DynProg.cpp
|  
* commit f490d98c5a47fed13e8c78d120915f74df477ca0
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Dec 4 20:30:48 2008 +0000
| 
|     testsuite:
|     - Cosmetic fixes to tester for R static.
| 
| M	testsuite/r/util/convert_features_and_add_preproc.R
|  
* commit 0749b2d8e8cec2ab839bd212db4da0e2f92082f9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Dec 4 20:29:46 2008 +0000
| 
|     testsuite:
|     - Implemented tester for R modular for distance and clustering.
| 
| A	testsuite/r-modular/clustering.R
| A	testsuite/r-modular/distance.R
| M	testsuite/r-modular/test_one.R
| A	testsuite/r-modular/util/convert_features_and_add_preproc.R
| A	testsuite/r-modular/util/get_distance.R
| A	testsuite/r-modular/util/get_features.R
| A	testsuite/r-modular/util/get_kernel.R
| D	testsuite/r-modular/util/set_distance.R
| D	testsuite/r-modular/util/set_features.R
| D	testsuite/r-modular/util/set_kernel.R
|  
* commit 8786fe7bb92fe8c8a38e2ee6f119860835df2138
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Dec 4 11:03:59 2008 +0000
| 
| M	examples/matlab_and_octave/graphical/test_spec_interp.m
|  
* commit 410ae0fbc2ff166c8d991989938f8026885b4a13
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 4 10:09:58 2008 +0000
| 
|     add missing bracket in front of sum
| 
| M	src/kernel/PolyMatchWordStringKernel.h
|  
* commit 5e9a9dfc781219370573a6ef6c6967094849aee8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 4 07:24:45 2008 +0000
| 
|     don't use variable length arrays in svmlight
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 75827653102e2234732d8369f8e6fea72a2192e1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 4 07:13:21 2008 +0000
| 
|     use C99 variadic macros
| 
| M	src/lib/io.h
|  
* commit f75cce30321b099abe3aa9896f35b563c6465008
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 2 20:25:44 2008 +0000
| 
|     testsuite:
|     - Fixed the issue with miscalculated distribution HMM in tester for octave
|       modular. Miscalculations within TOP/FK are still a mystery.
| 
| M	testsuite/octave-modular/distribution.m
| M	testsuite/octave-modular/kernel.m
| M	testsuite/octave-modular/util/globals.m
| M	testsuite/octave-modular/util/set_pos_and_neg.m
|  
* commit 9e0637c6a6671e38e3448798a11536e1bc46c088
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 2 18:55:02 2008 +0000
| 
|     testsuite:
|     - Data files have changed, of course.
| 
| M	testsuite/data/classifier/GMNPSVM_0017_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_023_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_15_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_1en05_16_15_0001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_1en05_1_15_0001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_0017_1en05_1_001_Linear.m
| M	testsuite/data/classifier/GPBTSVM_0017_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_023_1en05_1_001_Linear.m
| M	testsuite/data/classifier/GPBTSVM_023_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_15_1en05_1_001_Linear.m
| M	testsuite/data/classifier/GPBTSVM_15_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_30_1en05_16_0001_Linear.m
| M	testsuite/data/classifier/GPBTSVM_30_1en05_16_15_0001_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_30_1en05_1_0001_Linear.m
| M	testsuite/data/classifier/GPBTSVM_30_1en05_1_001_Linear.m
| M	testsuite/data/classifier/GPBTSVM_30_1en05_1_15_0001_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_30_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/KNN_EuclidianDistance_3_1.m
| M	testsuite/data/classifier/LDA_01_1.m
| M	testsuite/data/classifier/LibLinear_0017_1en05_1_True.m
| M	testsuite/data/classifier/LibLinear_023_1en05_1_True.m
| M	testsuite/data/classifier/LibLinear_15_1en05_1_True.m
| M	testsuite/data/classifier/LibLinear_30_1en05_16_True.m
| M	testsuite/data/classifier/LibLinear_30_1en05_1_True.m
| M	testsuite/data/classifier/LibSVMMultiClass_0017_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_023_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_15_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_1en05_16_15_0001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_1en05_1_15_0001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_0017_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_023_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_15_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1en05_16_15_0001_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1en05_1_15_0001_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/LibSVM_0017_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/LibSVM_023_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/LibSVM_15_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/LibSVM_30_1en05_16_15_0001_Gaussian.m
| M	testsuite/data/classifier/LibSVM_30_1en05_1_15_0001_Gaussian.m
| M	testsuite/data/classifier/LibSVM_30_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/MPDSVM_0017_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/MPDSVM_023_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/MPDSVM_15_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/MPDSVM_30_1en05_16_15_0001_Gaussian.m
| M	testsuite/data/classifier/MPDSVM_30_1en05_1_15_0001_Gaussian.m
| M	testsuite/data/classifier/MPDSVM_30_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/Perceptron_1_01_1000.m
| M	testsuite/data/classifier/SVMLight_0017_1en05_1_001_Linear.m
| M	testsuite/data/classifier/SVMLight_0017_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/SVMLight_023_1en05_1_001_Linear.m
| M	testsuite/data/classifier/SVMLight_023_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/SVMLight_15_1en05_1_001_Linear.m
| M	testsuite/data/classifier/SVMLight_15_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/SVMLight_30_1en05_16_0001_Linear.m
| M	testsuite/data/classifier/SVMLight_30_1en05_16_15_0001_Gaussian.m
| M	testsuite/data/classifier/SVMLight_30_1en05_1_0001_Linear.m
| M	testsuite/data/classifier/SVMLight_30_1en05_1_001_Linear.m
| M	testsuite/data/classifier/SVMLight_30_1en05_1_15_0001_Gaussian.m
| M	testsuite/data/classifier/SVMLight_30_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/SVMLin_0017_1en05_1_True.m
| M	testsuite/data/classifier/SVMLin_023_1en05_1_True.m
| M	testsuite/data/classifier/SVMLin_15_1en05_1_True.m
| M	testsuite/data/classifier/SVMLin_30_1en05_16_True.m
| M	testsuite/data/classifier/SVMLin_30_1en05_1_True.m
| M	testsuite/data/classifier/SVMOcas_0017_1en05_1_False.m
| M	testsuite/data/classifier/SVMOcas_023_1en05_1_False.m
| M	testsuite/data/classifier/SVMOcas_15_1en05_1_False.m
| M	testsuite/data/classifier/SVMOcas_30_1en05_16_False.m
| M	testsuite/data/classifier/SVMOcas_30_1en05_1_False.m
| M	testsuite/data/classifier/SVMSGD_0017_1en05_1_True.m
| M	testsuite/data/classifier/SVMSGD_023_1en05_1_True.m
| M	testsuite/data/classifier/SVMSGD_15_1en05_1_True.m
| M	testsuite/data/classifier/SVMSGD_30_1en05_16_True.m
| M	testsuite/data/classifier/SVMSGD_30_1en05_1_True.m
| M	testsuite/data/classifier/SubGradientSVM_0017_1en05_1_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_023_1en05_1_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_15_1en05_1_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_30_1en05_16_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_30_1en05_1_05_False.m
| M	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| M	testsuite/data/distance/BrayCurtisDistance_fnord.m
| M	testsuite/data/distance/CanberraMetric_fnord.m
| M	testsuite/data/distance/ChebyshewMetric_fnord.m
| M	testsuite/data/distance/ChiSquareDistance_fnord.m
| M	testsuite/data/distance/CosineDistance_fnord.m
| M	testsuite/data/distance/EuclidianDistance_fnord.m
| M	testsuite/data/distance/GeodesicMetric_fnord.m
| M	testsuite/data/distance/JensenMetric_fnord.m
| M	testsuite/data/distance/ManhattanMetric_fnord.m
| M	testsuite/data/distance/MinkowskiMetric_13.m
| M	testsuite/data/distance/SparseEuclidianDistance_fnord.m
| M	testsuite/data/distance/TanimotoDistance_fnord.m
| M	testsuite/data/kernel/AUC_10_10_Gaussian_17.m
| M	testsuite/data/kernel/Chi2_10_12.m
| M	testsuite/data/kernel/Const_230.m
| M	testsuite/data/kernel/Custom_7.m
| M	testsuite/data/kernel/Diag_10_230.m
| M	testsuite/data/kernel/Distance_10_CanberraMetric_17.m
| M	testsuite/data/kernel/GaussianShift_10_1_13_2.m
| M	testsuite/data/kernel/Gaussian_10_13.m
| M	testsuite/data/kernel/Linear_fnord.m
| M	testsuite/data/kernel/Poly_3_10_False.m
| M	testsuite/data/kernel/Poly_3_10_True.m
| M	testsuite/data/kernel/Sigmoid_10_05_07.m
| M	testsuite/data/kernel/Sigmoid_10_11_13.m
| M	testsuite/data/kernel/SparseGaussian_10_17.m
| M	testsuite/data/kernel/SparseLinear_fnord.m
| M	testsuite/data/kernel/SparsePoly_3_10_False.m
| M	testsuite/data/kernel/SparsePoly_3_10_True.m
| M	testsuite/data/preproc/LogPlusOne_12_Gaussian.m
| M	testsuite/data/preproc/NormOne_12_Gaussian.m
| M	testsuite/data/preproc/PruneVarSubMean_False_12_Gaussian.m
| M	testsuite/data/preproc/PruneVarSubMean_True_12_Gaussian.m
| M	testsuite/data/regression/KRR_16_15_Gaussian_1en05.m
| M	testsuite/data/regression/KRR_1_15_Gaussian_1en05.m
| M	testsuite/data/regression/KRR_1_15_Gaussian_1en06.m
| M	testsuite/data/regression/LibSVR_0017_1_15_Gaussian_1en05_001.m
| M	testsuite/data/regression/LibSVR_023_1_15_Gaussian_1en05_001.m
| M	testsuite/data/regression/LibSVR_15_1_15_Gaussian_1en05_001.m
| M	testsuite/data/regression/LibSVR_30_16_15_Gaussian_00001_0001.m
| M	testsuite/data/regression/LibSVR_30_1_15_Gaussian_00001_0001.m
| M	testsuite/data/regression/LibSVR_30_1_15_Gaussian_00001_001.m
| M	testsuite/data/regression/LibSVR_30_1_15_Gaussian_1en05_001.m
| M	testsuite/data/regression/SVRLight_0017_1_15_Gaussian_1en05_001.m
| M	testsuite/data/regression/SVRLight_023_1_15_Gaussian_1en05_001.m
| M	testsuite/data/regression/SVRLight_15_1_15_Gaussian_1en05_001.m
| M	testsuite/data/regression/SVRLight_30_1_15_Gaussian_00001_0001.m
| M	testsuite/data/regression/SVRLight_30_1_15_Gaussian_00001_001.m
| M	testsuite/data/regression/SVRLight_30_1_15_Gaussian_1en05_001.m
|  
* commit 7ab5774b5e0efffd2c8d79fb3738bd8af65f9f64
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 2 18:53:27 2008 +0000
| 
|     testsuite:
|     - Rounding the randomly generated double precision values, before being used as
|       input data, yields in better results when recalculated in tester. Namely, it
|       fixes a little accuracy issue with SVMOcas in the modular interfaces.
| 
| M	testsuite/generator/dataop.py
|  
* commit 1887fa5178b4e4bccd4e21102ea43f53b70e703e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 2 18:32:00 2008 +0000
| 
|     testsuite:
|     - a first stab at tester for R modular, all defunct.
| 
| A	testsuite/r-modular/regression.R
| M	testsuite/r-modular/test_all.sh
| A	testsuite/r-modular/test_one.R
| A	testsuite/r-modular/test_one.sh
| A	testsuite/r-modular/util/check_accuracy.R
| A	testsuite/r-modular/util/read_mfile.R
| A	testsuite/r-modular/util/set_distance.R
| A	testsuite/r-modular/util/set_features.R
| A	testsuite/r-modular/util/set_kernel.R
| A	testsuite/r-modular/util/tobool.R
|  
* commit dee976b521844d59543b3b430028287d75463124
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 30 23:15:21 2008 +0000
| 
|     testsuite:
|     - Adjusted tester for R static to previous changes.
| 
| M	testsuite/r/classifier.R
| M	testsuite/r/clustering.R
| M	testsuite/r/distance.R
| M	testsuite/r/distribution.R
| M	testsuite/r/kernel.R
| M	testsuite/r/preproc.R
| M	testsuite/r/regression.R
| M	testsuite/r/test_one.R
| M	testsuite/r/util/convert_features_and_add_preproc.R
| A	testsuite/r/util/fix_normalizer_name_inconsistency.R
| M	testsuite/r/util/set_distance.R
| M	testsuite/r/util/set_features.R
| M	testsuite/r/util/set_kernel.R
|  
* commit 947aed46e23427ea890b50ba543028854cce427f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 30 23:14:07 2008 +0000
| 
|     testsuite:
|     - Adjusted tester for octave/matlab static to previous changes.
| 
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/clustering.m
| M	testsuite/matlab_and_octave/distance.m
| M	testsuite/matlab_and_octave/distribution.m
| M	testsuite/matlab_and_octave/kernel.m
| M	testsuite/matlab_and_octave/preproc.m
| M	testsuite/matlab_and_octave/regression.m
| M	testsuite/matlab_and_octave/util/convert_features_and_add_preproc.m
| D	testsuite/matlab_and_octave/util/fix_normalization_inconsistency.m
| A	testsuite/matlab_and_octave/util/fix_normalizer_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_distance.m
| M	testsuite/matlab_and_octave/util/set_features.m
| M	testsuite/matlab_and_octave/util/set_kernel.m
|  
* commit 6644362129a36b5ccde64a9e3ac390458cbf5829
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 30 23:13:26 2008 +0000
| 
|     testsuite:
|     - Adjusted tester for octave modular to previous changes.
| 
| M	testsuite/octave-modular/classifier.m
| M	testsuite/octave-modular/clustering.m
| M	testsuite/octave-modular/distance.m
| M	testsuite/octave-modular/distribution.m
| M	testsuite/octave-modular/kernel.m
| M	testsuite/octave-modular/preproc.m
| M	testsuite/octave-modular/regression.m
| M	testsuite/octave-modular/util/convert_features_and_add_preproc.m
| M	testsuite/octave-modular/util/globals.m
| M	testsuite/octave-modular/util/set_distance.m
| M	testsuite/octave-modular/util/set_features.m
| M	testsuite/octave-modular/util/set_kernel.m
| M	testsuite/octave-modular/util/set_pos_and_neg.m
|  
* commit e16815574283c77f8045d21ff8138c2a86f8919c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 30 23:12:18 2008 +0000
| 
|     testsuite:
|     - Adjusted tester for python modular to previous changes.
| 
| M	testsuite/python-modular/classifier.py
| M	testsuite/python-modular/clustering.py
| M	testsuite/python-modular/distance.py
| M	testsuite/python-modular/distribution.py
| M	testsuite/python-modular/kernel.py
| M	testsuite/python-modular/preproc.py
| M	testsuite/python-modular/regression.py
| M	testsuite/python-modular/test_one.py
| M	testsuite/python-modular/util.py
|  
* commit af87a2a4c5f8ba01c9b250832550a972ce1493ff
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 30 23:10:16 2008 +0000
| 
|     testsuite:
|     - Adjusted tester for python static to previous changes.
| 
| M	testsuite/python/classifier.py
| M	testsuite/python/clustering.py
| M	testsuite/python/distance.py
| M	testsuite/python/distribution.py
| M	testsuite/python/kernel.py
| M	testsuite/python/preproc.py
| M	testsuite/python/regression.py
| M	testsuite/python/test_one.py
| M	testsuite/python/util.py
|  
* commit f84ef6777e4a1d12d66aff8d726d65f8358f72bd
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 30 23:06:59 2008 +0000
| 
|     testsuite:
|     - Most data files have changed with previous changes to generator.
| 
| A	testsuite/data/classifier/GMNPSVM_0017_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_023_1en05_1_15_001_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_15_0001_1en05_Gaussian_30_1.m
| D	testsuite/data/classifier/GMNPSVM_15_0001_1en05_Gaussian_30_16.m
| D	testsuite/data/classifier/GMNPSVM_15_001_1en05_Gaussian_0017_1.m
| D	testsuite/data/classifier/GMNPSVM_15_001_1en05_Gaussian_023_1.m
| D	testsuite/data/classifier/GMNPSVM_15_001_1en05_Gaussian_15_1.m
| D	testsuite/data/classifier/GMNPSVM_15_001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/GMNPSVM_15_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_1en05_16_15_0001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_1en05_1_15_0001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_1en05_1_15_001_Gaussian.m
| D	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_1.m
| D	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_16.m
| A	testsuite/data/classifier/GPBTSVM_0017_1en05_1_001_Linear.m
| A	testsuite/data/classifier/GPBTSVM_0017_1en05_1_15_001_Gaussian.m
| D	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_0017_1.m
| D	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_023_1.m
| D	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_15_1.m
| D	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_30_1.m
| A	testsuite/data/classifier/GPBTSVM_023_1en05_1_001_Linear.m
| A	testsuite/data/classifier/GPBTSVM_023_1en05_1_15_001_Gaussian.m
| D	testsuite/data/classifier/GPBTSVM_15_0001_1en05_Gaussian_30_1.m
| D	testsuite/data/classifier/GPBTSVM_15_0001_1en05_Gaussian_30_16.m
| D	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_0017_1.m
| D	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_023_1.m
| D	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_15_1.m
| D	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/GPBTSVM_15_1en05_1_001_Linear.m
| A	testsuite/data/classifier/GPBTSVM_15_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_1en05_0001_CommUlongString_0_3_DNA_30_16_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_0001_CommUlongString_0_3_DNA_30_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_0001_CommWordString_0_3_DNA_30_16_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_0001_CommWordString_0_3_DNA_30_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_0001_True_60_DNA_30_16_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_0001_True_60_DNA_30_16_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_0001_True_60_DNA_30_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_0001_True_60_DNA_30_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreePositionString_DNA_30_16_20_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreePositionString_DNA_30_16_20_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreePositionString_DNA_30_1_20_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreePositionString_DNA_30_1_20_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreeString_DNA_30_16_3_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreeString_DNA_30_16_3_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreeString_DNA_30_1_3_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreeString_DNA_30_1_3_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_CommUlongString_0_3_DNA_0017_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_CommUlongString_0_3_DNA_023_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_CommUlongString_0_3_DNA_15_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_CommUlongString_0_3_DNA_30_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_CommWordString_0_3_DNA_0017_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_CommWordString_0_3_DNA_023_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_CommWordString_0_3_DNA_15_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_CommWordString_0_3_DNA_30_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_0017_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_0017_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_023_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_023_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_15_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_15_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_30_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_30_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_0017_1_20_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_0017_1_20_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_023_1_20_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_023_1_20_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_15_1_20_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_15_1_20_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_30_1_20_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_30_1_20_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_0017_1_3_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_0017_1_3_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_023_1_3_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_023_1_3_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_15_1_3_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_15_1_3_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_30_1_3_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_30_1_3_60_True.m
| A	testsuite/data/classifier/GPBTSVM_30_1en05_16_0001_Linear.m
| A	testsuite/data/classifier/GPBTSVM_30_1en05_16_15_0001_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_30_1en05_1_0001_Linear.m
| A	testsuite/data/classifier/GPBTSVM_30_1en05_1_001_Linear.m
| A	testsuite/data/classifier/GPBTSVM_30_1en05_1_15_0001_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_30_1en05_1_15_001_Gaussian.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommUlongString_False_30_16_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommUlongString_False_30_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommWordString_False_30_16_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommWordString_False_30_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_True_30_16_20_DNA_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_True_30_16_3_DNA_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_True_30_1_20_DNA_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_True_30_1_3_DNA_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_16_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_16_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_0017_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_023_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_15_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_30_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_0017_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_023_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_15_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_30_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_0017_1_20_DNA_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_0017_1_3_DNA_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_023_1_20_DNA_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_023_1_3_DNA_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_15_1_20_DNA_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_15_1_3_DNA_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_30_1_20_DNA_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_30_1_3_DNA_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/KNN_EuclidianDistance_1_3.m
| A	testsuite/data/classifier/KNN_EuclidianDistance_3_1.m
| A	testsuite/data/classifier/LDA_01_1.m
| D	testsuite/data/classifier/LDA_1_01.m
| D	testsuite/data/classifier/LibLinear_0017_1_1en05_True.m
| A	testsuite/data/classifier/LibLinear_0017_1en05_1_True.m
| D	testsuite/data/classifier/LibLinear_023_1_1en05_True.m
| A	testsuite/data/classifier/LibLinear_023_1en05_1_True.m
| D	testsuite/data/classifier/LibLinear_15_1_1en05_True.m
| A	testsuite/data/classifier/LibLinear_15_1en05_1_True.m
| D	testsuite/data/classifier/LibLinear_30_16_1en05_True.m
| D	testsuite/data/classifier/LibLinear_30_1_1en05_True.m
| A	testsuite/data/classifier/LibLinear_30_1en05_16_True.m
| A	testsuite/data/classifier/LibLinear_30_1en05_1_True.m
| A	testsuite/data/classifier/LibSVMMultiClass_0017_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_023_1en05_1_15_001_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_15_0001_1en05_Gaussian_30_1.m
| D	testsuite/data/classifier/LibSVMMultiClass_15_0001_1en05_Gaussian_30_16.m
| D	testsuite/data/classifier/LibSVMMultiClass_15_001_1en05_Gaussian_0017_1.m
| D	testsuite/data/classifier/LibSVMMultiClass_15_001_1en05_Gaussian_023_1.m
| D	testsuite/data/classifier/LibSVMMultiClass_15_001_1en05_Gaussian_15_1.m
| D	testsuite/data/classifier/LibSVMMultiClass_15_001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/LibSVMMultiClass_15_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_30_1en05_16_15_0001_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_30_1en05_1_15_0001_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_30_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVMOneClass_0017_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVMOneClass_023_1en05_1_15_001_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_15_0001_1en05_Gaussian_30_1.m
| D	testsuite/data/classifier/LibSVMOneClass_15_0001_1en05_Gaussian_30_16.m
| D	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_0017_1.m
| D	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_023_1.m
| D	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_15_1.m
| D	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/LibSVMOneClass_15_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVMOneClass_30_1en05_16_15_0001_Gaussian.m
| A	testsuite/data/classifier/LibSVMOneClass_30_1en05_1_15_0001_Gaussian.m
| A	testsuite/data/classifier/LibSVMOneClass_30_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVM_0017_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVM_023_1en05_1_15_001_Gaussian.m
| D	testsuite/data/classifier/LibSVM_15_0001_1en05_Gaussian_30_1.m
| D	testsuite/data/classifier/LibSVM_15_0001_1en05_Gaussian_30_16.m
| D	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_0017_1.m
| D	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_023_1.m
| D	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_15_1.m
| D	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/LibSVM_15_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVM_30_1en05_16_15_0001_Gaussian.m
| A	testsuite/data/classifier/LibSVM_30_1en05_1_15_0001_Gaussian.m
| A	testsuite/data/classifier/LibSVM_30_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/MPDSVM_0017_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/MPDSVM_023_1en05_1_15_001_Gaussian.m
| D	testsuite/data/classifier/MPDSVM_15_0001_1en05_Gaussian_30_1.m
| D	testsuite/data/classifier/MPDSVM_15_0001_1en05_Gaussian_30_16.m
| D	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_0017_1.m
| D	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_023_1.m
| D	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_15_1.m
| D	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/MPDSVM_15_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/MPDSVM_30_1en05_16_15_0001_Gaussian.m
| A	testsuite/data/classifier/MPDSVM_30_1en05_1_15_0001_Gaussian.m
| A	testsuite/data/classifier/MPDSVM_30_1en05_1_15_001_Gaussian.m
| D	testsuite/data/classifier/Perceptron_01_1_1000.m
| A	testsuite/data/classifier/Perceptron_1_01_1000.m
| D	testsuite/data/classifier/SVMLight_0001_1en05_Linear_30_1.m
| D	testsuite/data/classifier/SVMLight_0001_1en05_Linear_30_16.m
| A	testsuite/data/classifier/SVMLight_0017_1en05_1_001_Linear.m
| A	testsuite/data/classifier/SVMLight_0017_1en05_1_15_001_Gaussian.m
| D	testsuite/data/classifier/SVMLight_001_1en05_Linear_0017_1.m
| D	testsuite/data/classifier/SVMLight_001_1en05_Linear_023_1.m
| D	testsuite/data/classifier/SVMLight_001_1en05_Linear_15_1.m
| D	testsuite/data/classifier/SVMLight_001_1en05_Linear_30_1.m
| A	testsuite/data/classifier/SVMLight_023_1en05_1_001_Linear.m
| A	testsuite/data/classifier/SVMLight_023_1en05_1_15_001_Gaussian.m
| D	testsuite/data/classifier/SVMLight_15_0001_1en05_Gaussian_30_1.m
| D	testsuite/data/classifier/SVMLight_15_0001_1en05_Gaussian_30_16.m
| D	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_0017_1.m
| D	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_023_1.m
| D	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_15_1.m
| D	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/SVMLight_15_1en05_1_001_Linear.m
| A	testsuite/data/classifier/SVMLight_15_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/SVMLight_1en05_0001_CommUlongString_0_3_DNA_30_16_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_0001_CommUlongString_0_3_DNA_30_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_0001_CommWordString_0_3_DNA_30_16_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_0001_CommWordString_0_3_DNA_30_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_0001_True_60_DNA_30_16_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_0001_True_60_DNA_30_16_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_0001_True_60_DNA_30_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_0001_True_60_DNA_30_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_0001_WeightedDegreePositionString_DNA_30_16_20_60.m
| A	testsuite/data/classifier/SVMLight_1en05_0001_WeightedDegreePositionString_DNA_30_16_20_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_0001_WeightedDegreePositionString_DNA_30_1_20_60.m
| A	testsuite/data/classifier/SVMLight_1en05_0001_WeightedDegreePositionString_DNA_30_1_20_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_0001_WeightedDegreeString_DNA_30_16_3_60.m
| A	testsuite/data/classifier/SVMLight_1en05_0001_WeightedDegreeString_DNA_30_16_3_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_0001_WeightedDegreeString_DNA_30_1_3_60.m
| A	testsuite/data/classifier/SVMLight_1en05_0001_WeightedDegreeString_DNA_30_1_3_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_001_CommUlongString_0_3_DNA_0017_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_001_CommUlongString_0_3_DNA_023_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_001_CommUlongString_0_3_DNA_15_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_001_CommUlongString_0_3_DNA_30_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_001_CommWordString_0_3_DNA_0017_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_001_CommWordString_0_3_DNA_023_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_001_CommWordString_0_3_DNA_15_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_001_CommWordString_0_3_DNA_30_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_001_True_60_DNA_0017_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_001_True_60_DNA_0017_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_001_True_60_DNA_023_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_001_True_60_DNA_023_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_001_True_60_DNA_15_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_001_True_60_DNA_15_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_001_True_60_DNA_30_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_001_True_60_DNA_30_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_0017_1_20_60.m
| A	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_0017_1_20_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_023_1_20_60.m
| A	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_023_1_20_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_15_1_20_60.m
| A	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_15_1_20_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_30_1_20_60.m
| A	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_30_1_20_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_0017_1_3_60.m
| A	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_0017_1_3_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_023_1_3_60.m
| A	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_023_1_3_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_15_1_3_60.m
| A	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_15_1_3_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_30_1_3_60.m
| A	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_30_1_3_60_True.m
| A	testsuite/data/classifier/SVMLight_30_1en05_16_0001_Linear.m
| A	testsuite/data/classifier/SVMLight_30_1en05_16_15_0001_Gaussian.m
| A	testsuite/data/classifier/SVMLight_30_1en05_1_0001_Linear.m
| A	testsuite/data/classifier/SVMLight_30_1en05_1_001_Linear.m
| A	testsuite/data/classifier/SVMLight_30_1en05_1_15_0001_Gaussian.m
| A	testsuite/data/classifier/SVMLight_30_1en05_1_15_001_Gaussian.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommUlongString_False_30_16_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommUlongString_False_30_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommWordString_False_30_16_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommWordString_False_30_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_True_30_16_20_DNA_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_True_30_16_3_DNA_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_True_30_1_20_DNA_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_True_30_1_3_DNA_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_16_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_16_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_0017_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_023_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_15_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_30_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_0017_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_023_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_15_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_30_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_True_0017_1_20_DNA_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_True_0017_1_3_DNA_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_True_023_1_20_DNA_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_True_023_1_3_DNA_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_True_15_1_20_DNA_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_True_15_1_3_DNA_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_True_30_1_20_DNA_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_True_30_1_3_DNA_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLin_0017_1_1en05_True.m
| A	testsuite/data/classifier/SVMLin_0017_1en05_1_True.m
| D	testsuite/data/classifier/SVMLin_023_1_1en05_True.m
| A	testsuite/data/classifier/SVMLin_023_1en05_1_True.m
| D	testsuite/data/classifier/SVMLin_15_1_1en05_True.m
| A	testsuite/data/classifier/SVMLin_15_1en05_1_True.m
| D	testsuite/data/classifier/SVMLin_30_16_1en05_True.m
| D	testsuite/data/classifier/SVMLin_30_1_1en05_True.m
| A	testsuite/data/classifier/SVMLin_30_1en05_16_True.m
| A	testsuite/data/classifier/SVMLin_30_1en05_1_True.m
| D	testsuite/data/classifier/SVMOcas_0017_1_1en05_False.m
| A	testsuite/data/classifier/SVMOcas_0017_1en05_1_False.m
| D	testsuite/data/classifier/SVMOcas_023_1_1en05_False.m
| A	testsuite/data/classifier/SVMOcas_023_1en05_1_False.m
| D	testsuite/data/classifier/SVMOcas_15_1_1en05_False.m
| A	testsuite/data/classifier/SVMOcas_15_1en05_1_False.m
| D	testsuite/data/classifier/SVMOcas_30_16_1en05_False.m
| D	testsuite/data/classifier/SVMOcas_30_1_1en05_False.m
| A	testsuite/data/classifier/SVMOcas_30_1en05_16_False.m
| A	testsuite/data/classifier/SVMOcas_30_1en05_1_False.m
| D	testsuite/data/classifier/SVMSGD_0017_1_1en05_True.m
| A	testsuite/data/classifier/SVMSGD_0017_1en05_1_True.m
| D	testsuite/data/classifier/SVMSGD_023_1_1en05_True.m
| A	testsuite/data/classifier/SVMSGD_023_1en05_1_True.m
| D	testsuite/data/classifier/SVMSGD_15_1_1en05_True.m
| A	testsuite/data/classifier/SVMSGD_15_1en05_1_True.m
| D	testsuite/data/classifier/SVMSGD_30_16_1en05_True.m
| D	testsuite/data/classifier/SVMSGD_30_1_1en05_True.m
| A	testsuite/data/classifier/SVMSGD_30_1en05_16_True.m
| A	testsuite/data/classifier/SVMSGD_30_1en05_1_True.m
| A	testsuite/data/classifier/SubGradientSVM_0017_1en05_1_05_False.m
| A	testsuite/data/classifier/SubGradientSVM_023_1en05_1_05_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_0017_1_1en05_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_023_1_1en05_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_15_1_1en05_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_30_16_1en05_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_30_1_1en05_False.m
| A	testsuite/data/classifier/SubGradientSVM_15_1en05_1_05_False.m
| A	testsuite/data/classifier/SubGradientSVM_30_1en05_16_05_False.m
| A	testsuite/data/classifier/SubGradientSVM_30_1en05_1_05_False.m
| M	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| M	testsuite/data/distance/BrayCurtisDistance_fnord.m
| M	testsuite/data/distance/CanberraMetric_fnord.m
| D	testsuite/data/distance/CanberraWordDistance_60_0_False_DNA_3.m
| A	testsuite/data/distance/CanberraWordDistance_DNA_False_60_3_0.m
| M	testsuite/data/distance/ChebyshewMetric_fnord.m
| M	testsuite/data/distance/ChiSquareDistance_fnord.m
| M	testsuite/data/distance/CosineDistance_fnord.m
| M	testsuite/data/distance/EuclidianDistance_fnord.m
| M	testsuite/data/distance/GeodesicMetric_fnord.m
| D	testsuite/data/distance/HammingWordDistance_60_0_False_False_DNA_3.m
| D	testsuite/data/distance/HammingWordDistance_60_0_False_True_DNA_3.m
| A	testsuite/data/distance/HammingWordDistance_False_DNA_False_60_3_0.m
| A	testsuite/data/distance/HammingWordDistance_True_DNA_False_60_3_0.m
| M	testsuite/data/distance/JensenMetric_fnord.m
| M	testsuite/data/distance/ManhattanMetric_fnord.m
| D	testsuite/data/distance/ManhattanWordDistance_60_0_False_DNA_3.m
| A	testsuite/data/distance/ManhattanWordDistance_DNA_False_60_3_0.m
| M	testsuite/data/distance/MinkowskiMetric_13.m
| M	testsuite/data/distance/SparseEuclidianDistance_fnord.m
| M	testsuite/data/distance/TanimotoDistance_fnord.m
| A	testsuite/data/distribution/HMM_1en10_60_4_1_0_6_3_False_CUBE.m
| D	testsuite/data/distribution/HMM_4_60_6_3_0_1en10_False_CUBE_1.m
| A	testsuite/data/distribution/Histogram_60_3_0_False_DNA.m
| D	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| A	testsuite/data/distribution/LinearHMM_60_3_0_False_DNA.m
| D	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| A	testsuite/data/kernel/AUC_10_10_Gaussian_17.m
| D	testsuite/data/kernel/AUC_15_Gaussian_10.m
| M	testsuite/data/kernel/Chi2_10_12.m
| D	testsuite/data/kernel/Combined_3_10_60_LocalAlignmentString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| A	testsuite/data/kernel/Combined_True_3_10_3_LocalAlignmentString_60_FixedDegreeString_10_60_PolyMatchString_DNA_10_DNA_DNA_60.m
| D	testsuite/data/kernel/CommUlongString_60_0_False_False_DNA_3.m
| A	testsuite/data/kernel/CommUlongString_DNA_10_0_False_3_60_False.m
| D	testsuite/data/kernel/CommWordString_60_0_False_False_DNA_3.m
| A	testsuite/data/kernel/CommWordString_DNA_10_0_False_3_60_False.m
| M	testsuite/data/kernel/Const_230.m
| M	testsuite/data/kernel/Custom_7.m
| A	testsuite/data/kernel/Diag_10_230.m
| D	testsuite/data/kernel/Diag_230.m
| A	testsuite/data/kernel/Distance_10_CanberraMetric_17.m
| D	testsuite/data/kernel/Distance_CanberraMetric_17.m
| A	testsuite/data/kernel/FixedDegreeString_3_DNA_10_60.m
| D	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| A	testsuite/data/kernel/GaussianShift_10_1_13_2.m
| D	testsuite/data/kernel/GaussianShift_1_2_13.m
| A	testsuite/data/kernel/Gaussian_10_13.m
| D	testsuite/data/kernel/Gaussian_13.m
| D	testsuite/data/kernel/HistogramWordString_60_0_DNA_3_False.m
| A	testsuite/data/kernel/HistogramWordString_DNA_0_3_60_False.m
| D	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| A	testsuite/data/kernel/LinearByte_RAWBYTE_60.m
| D	testsuite/data/kernel/LinearString_60_DNA.m
| A	testsuite/data/kernel/LinearString_DNA_60.m
| M	testsuite/data/kernel/LinearWord_fnord.m
| M	testsuite/data/kernel/Linear_fnord.m
| D	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| A	testsuite/data/kernel/LocalAlignmentString_DNA_10_60.m
| A	testsuite/data/kernel/MatchWordString_3_DNA_10_0_3_60_False.m
| D	testsuite/data/kernel/MatchWordString_60_0_False_3_DNA_3.m
| A	testsuite/data/kernel/PolyMatchString_3_DNA_10_60_False.m
| A	testsuite/data/kernel/PolyMatchString_3_DNA_10_60_True.m
| D	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| D	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| A	testsuite/data/kernel/PolyMatchWordString_3_DNA_10_0_3_60_False_False.m
| A	testsuite/data/kernel/PolyMatchWordString_3_DNA_10_0_3_60_True_False.m
| D	testsuite/data/kernel/PolyMatchWordString_60_0_False_3_DNA_3_False.m
| D	testsuite/data/kernel/PolyMatchWordString_60_0_False_3_DNA_3_True.m
| A	testsuite/data/kernel/Poly_1_0_10_3_FK_6_01_False_False_CUBE_1.m
| A	testsuite/data/kernel/Poly_1_0_10_3_TOP_6_01_False_False_CUBE_1.m
| A	testsuite/data/kernel/Poly_3_10_False.m
| A	testsuite/data/kernel/Poly_3_10_True.m
| D	testsuite/data/kernel/Poly_4_6_0_8_3_FK_False_True_01_1_CUBE_1_False.m
| D	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_False_True_01_1_CUBE_1_False.m
| D	testsuite/data/kernel/Poly_False_3_False.m
| D	testsuite/data/kernel/Poly_False_3_True.m
| D	testsuite/data/kernel/Poly_True_3_False.m
| D	testsuite/data/kernel/Poly_True_3_True.m
| D	testsuite/data/kernel/SalzbergWordString_60_0_DNA_3_False.m
| A	testsuite/data/kernel/SalzbergWordString_DNA_0_3_60_False.m
| D	testsuite/data/kernel/Sigmoid_07_10_05.m
| A	testsuite/data/kernel/Sigmoid_10_05_07.m
| A	testsuite/data/kernel/Sigmoid_10_11_13.m
| D	testsuite/data/kernel/Sigmoid_13_10_11.m
| D	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| A	testsuite/data/kernel/SimpleLocalityImprovedString_DNA_10_5_60_5_7.m
| A	testsuite/data/kernel/SparseGaussian_10_17.m
| D	testsuite/data/kernel/SparseGaussian_13.m
| M	testsuite/data/kernel/SparseLinear_fnord.m
| M	testsuite/data/kernel/SparsePoly_3_10_False.m
| M	testsuite/data/kernel/SparsePoly_3_10_True.m
| D	testsuite/data/kernel/WeightedCommWordString_60_0_False_False_DNA_3.m
| A	testsuite/data/kernel/WeightedCommWordString_DNA_10_0_False_3_60_False.m
| A	testsuite/data/kernel/WeightedDegreePositionString_1_DNA_10_60.m
| A	testsuite/data/kernel/WeightedDegreePositionString_20_DNA_10_60.m
| D	testsuite/data/kernel/WeightedDegreePositionString_60_1_DNA.m
| D	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| D	testsuite/data/kernel/WeightedDegreeString_60_1_DNA.m
| D	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| A	testsuite/data/kernel/WeightedDegreeString_DNA_1_60.m
| A	testsuite/data/kernel/WeightedDegreeString_DNA_20_60.m
| A	testsuite/data/preproc/LogPlusOne_12_Gaussian.m
| D	testsuite/data/preproc/LogPlusOne_Gaussian_12.m
| A	testsuite/data/preproc/NormOne_12_Gaussian.m
| D	testsuite/data/preproc/NormOne_Gaussian_12.m
| A	testsuite/data/preproc/PruneVarSubMean_False_12_Gaussian.m
| D	testsuite/data/preproc/PruneVarSubMean_False_Gaussian_12.m
| A	testsuite/data/preproc/PruneVarSubMean_True_12_Gaussian.m
| D	testsuite/data/preproc/PruneVarSubMean_True_Gaussian_12.m
| D	testsuite/data/preproc/SortUlongString_60_0_False_DNA_CommUlongString_3_False.m
| A	testsuite/data/preproc/SortUlongString_DNA_0_CommUlongString_3_60_False.m
| D	testsuite/data/preproc/SortWordString_60_0_False_DNA_CommWordString_3_False.m
| A	testsuite/data/preproc/SortWordString_DNA_0_CommWordString_3_60_False.m
| A	testsuite/data/regression/KRR_16_15_Gaussian_1en05.m
| A	testsuite/data/regression/KRR_1_15_Gaussian_1en05.m
| A	testsuite/data/regression/KRR_1_15_Gaussian_1en06.m
| D	testsuite/data/regression/KRR_Gaussian_16_1en05_15.m
| D	testsuite/data/regression/KRR_Gaussian_1_1en05_15.m
| D	testsuite/data/regression/KRR_Gaussian_1_1en06_15.m
| D	testsuite/data/regression/LibSVR_0017_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_0017_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/LibSVR_023_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_023_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/LibSVR_15_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_15_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/LibSVR_30_16_15_00001_Gaussian_0001.m
| A	testsuite/data/regression/LibSVR_30_16_15_Gaussian_00001_0001.m
| D	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_0001.m
| D	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_30_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_30_1_15_Gaussian_00001_0001.m
| A	testsuite/data/regression/LibSVR_30_1_15_Gaussian_00001_001.m
| A	testsuite/data/regression/LibSVR_30_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/SVRLight_0017_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_0017_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/SVRLight_023_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_023_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/SVRLight_15_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_15_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_0001.m
| D	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_30_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_30_1_15_Gaussian_00001_0001.m
| A	testsuite/data/regression/SVRLight_30_1_15_Gaussian_00001_001.m
| A	testsuite/data/regression/SVRLight_30_1_15_Gaussian_1en05_001.m
|  
* commit d7cab53f538759b2220c9a81ea02c155f81cc5a1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 30 22:57:14 2008 +0000
| 
|     testsuite:
|     - Made generator a bit easier to understand and cleaned up a few things. also
|       see issue #38 on tracker.
| 
| A	testsuite/generator/category.py
| M	testsuite/generator/classifier.py
| M	testsuite/generator/clustering.py
| D	testsuite/generator/config.py
| M	testsuite/generator/distance.py
| M	testsuite/generator/distribution.py
| M	testsuite/generator/featop.py
| M	testsuite/generator/fileop.py
| M	testsuite/generator/kernel.py
| M	testsuite/generator/preproc.py
| M	testsuite/generator/regression.py
|  
* commit 458e6019260069aa939ea47ce724afcdb33a3782
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 28 12:46:05 2008 +0000
| 
|     add an option to set wds kernel position weights
| 
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.i
|  
* commit b6f69d84721b8da36a6d75710e1312c91b44a3ff
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 26 07:14:37 2008 +0000
| 
|     better description for wordsize detection
| 
| M	src/configure
|  
* commit 1d6223ce0c2db6a4b7d8bc7eb1a7f458085033cd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 26 07:09:56 2008 +0000
| 
|     detect integer word size
| 
| M	src/configure
|  
* commit c6df6d9e639d9df07f63a856c161de716f263011
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 26 04:27:53 2008 +0000
| 
|     Preparing for new Release shogun_0.6.7
| 
| M	doc/Doxyfile
|  
* commit 384cdac47bb7a92f761d969097de11a58b901e97
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 25 22:12:04 2008 +0000
| 
|     - Makefile target prepare-release now logs output to stdout and file.
| 
| M	Makefile
|  
* commit 4bd1fedc4235b34db95d0427aebfa6a20f946815
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 25 21:37:27 2008 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 11c2b4665fa4b930e3e0342ed95ddb25b3662bf5
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 25 20:46:18 2008 +0000
| 
|     - Improved handling of ChangeLog creation a little bit.
| 
| M	Makefile
| M	src/ChangeLog
| M	src/Makefile
|  
* commit 2dc446a720ec247347aca569262f8c8f639f85f7
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 25 20:43:34 2008 +0000
| 
|     updated changelog
| 
| M	src/Makefile
|  
* commit 2862c0ae105d6ff5e5c38b1c50069702cf87079c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 25 20:42:35 2008 +0000
| 
|     updated changelog
| 
| M	src/Makefile
|  
* commit c24cef4d13d7d7a7a0f33385aaff7d229bad2471
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 25 20:22:10 2008 +0000
| 
|     updated reference documentation
| 
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
|  
* commit 2b9bd0edb6051adc03486ad87d092125fb71b517
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 25 18:02:41 2008 +0000
| 
|     testsuite:
|     - Improved robustness in python interfaces when classifier_labeltype does not
|       exist.
|     - Fixed a typo (which seemed to result in a valid operator in R) which
|       calculated alphas wrongly for R static interface.
| 
| M	testsuite/python-modular/classifier.py
| M	testsuite/python/classifier.py
| M	testsuite/r/classifier.R
|  
* commit 6821bcfa9ca95fa9a8ed4c4c0c96c75c3e544701
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 25 18:01:06 2008 +0000
| 
|     testsuite:
|     - previous changes to generator require an update of the data files.
| 
| D	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_023_15_1_001_1en05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_15_0001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/GMNPSVM_15_0001_1en05_Gaussian_30_16.m
| A	testsuite/data/classifier/GMNPSVM_15_001_1en05_Gaussian_0017_1.m
| A	testsuite/data/classifier/GMNPSVM_15_001_1en05_Gaussian_023_1.m
| A	testsuite/data/classifier/GMNPSVM_15_001_1en05_Gaussian_15_1.m
| A	testsuite/data/classifier/GMNPSVM_15_001_1en05_Gaussian_30_1.m
| D	testsuite/data/classifier/GMNPSVM_15_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_15_16_0001_1en05_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_15_1_0001_1en05_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_1.m
| M	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_16.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_0017_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_023_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_15_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_30_1.m
| M	testsuite/data/classifier/GPBTSVM_15_0001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/GPBTSVM_15_0001_1en05_Gaussian_30_16.m
| M	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_0017_1.m
| M	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_023_1.m
| M	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_15_1.m
| M	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommUlongString_False_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommUlongString_False_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommWordString_False_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommWordString_False_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_True_30_16_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_True_30_16_3_DNA_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_True_30_1_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_True_30_1_3_DNA_WeightedDegreeString_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_16_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_16_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_0017_1_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_0017_1_3_DNA_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_023_1_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_023_1_3_DNA_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_15_1_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_15_1_3_DNA_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_30_1_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_30_1_3_DNA_WeightedDegreeString_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/KNN_EuclidianDistance_1_3.m
| M	testsuite/data/classifier/LDA_1_01.m
| M	testsuite/data/classifier/LibLinear_0017_1_1en05_True.m
| M	testsuite/data/classifier/LibLinear_023_1_1en05_True.m
| M	testsuite/data/classifier/LibLinear_15_1_1en05_True.m
| M	testsuite/data/classifier/LibLinear_30_16_1en05_True.m
| M	testsuite/data/classifier/LibLinear_30_1_1en05_True.m
| D	testsuite/data/classifier/LibSVMMultiClass_0017_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_023_15_1_001_1en05_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_15_0001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/LibSVMMultiClass_15_0001_1en05_Gaussian_30_16.m
| A	testsuite/data/classifier/LibSVMMultiClass_15_001_1en05_Gaussian_0017_1.m
| A	testsuite/data/classifier/LibSVMMultiClass_15_001_1en05_Gaussian_023_1.m
| A	testsuite/data/classifier/LibSVMMultiClass_15_001_1en05_Gaussian_15_1.m
| A	testsuite/data/classifier/LibSVMMultiClass_15_001_1en05_Gaussian_30_1.m
| D	testsuite/data/classifier/LibSVMMultiClass_15_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_15_16_0001_1en05_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_15_1_0001_1en05_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_15_0001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/LibSVMOneClass_15_0001_1en05_Gaussian_30_16.m
| M	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_0017_1.m
| M	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_023_1.m
| M	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_15_1.m
| M	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/LibSVM_15_0001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/LibSVM_15_0001_1en05_Gaussian_30_16.m
| M	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_0017_1.m
| M	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_023_1.m
| M	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_15_1.m
| M	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/MPDSVM_15_0001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/MPDSVM_15_0001_1en05_Gaussian_30_16.m
| M	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_0017_1.m
| M	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_023_1.m
| M	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_15_1.m
| M	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/Perceptron_01_1_1000.m
| D	testsuite/data/classifier/Perceptron_1_01_1000.m
| M	testsuite/data/classifier/SVMLight_0001_1en05_Linear_30_1.m
| M	testsuite/data/classifier/SVMLight_0001_1en05_Linear_30_16.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_0017_1.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_023_1.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_15_1.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_30_1.m
| M	testsuite/data/classifier/SVMLight_15_0001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/SVMLight_15_0001_1en05_Gaussian_30_16.m
| M	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_0017_1.m
| M	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_023_1.m
| M	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_15_1.m
| M	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommUlongString_False_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommUlongString_False_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommWordString_False_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommWordString_False_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_True_30_16_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_True_30_16_3_DNA_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_True_30_1_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_True_30_1_3_DNA_WeightedDegreeString_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_16_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_16_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_True_0017_1_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_True_0017_1_3_DNA_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_True_023_1_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_True_023_1_3_DNA_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_True_15_1_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_True_15_1_3_DNA_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_True_30_1_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_True_30_1_3_DNA_WeightedDegreeString_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLin_0017_1_1en05_True.m
| M	testsuite/data/classifier/SVMLin_023_1_1en05_True.m
| M	testsuite/data/classifier/SVMLin_15_1_1en05_True.m
| M	testsuite/data/classifier/SVMLin_30_16_1en05_True.m
| M	testsuite/data/classifier/SVMLin_30_1_1en05_True.m
| M	testsuite/data/classifier/SVMOcas_0017_1_1en05_False.m
| M	testsuite/data/classifier/SVMOcas_023_1_1en05_False.m
| M	testsuite/data/classifier/SVMOcas_15_1_1en05_False.m
| M	testsuite/data/classifier/SVMOcas_30_16_1en05_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_1en05_False.m
| M	testsuite/data/classifier/SVMSGD_0017_1_1en05_True.m
| M	testsuite/data/classifier/SVMSGD_023_1_1en05_True.m
| M	testsuite/data/classifier/SVMSGD_15_1_1en05_True.m
| M	testsuite/data/classifier/SVMSGD_30_16_1en05_True.m
| M	testsuite/data/classifier/SVMSGD_30_1_1en05_True.m
| M	testsuite/data/classifier/SubGradientSVM_05_0017_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_023_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1en05_False.m
| M	testsuite/data/distance/CanberraWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_False_DNA_3.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_True_DNA_3.m
| M	testsuite/data/distance/ManhattanWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| M	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| M	testsuite/data/kernel/Combined_3_10_60_LocalAlignmentString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| M	testsuite/data/kernel/CommUlongString_60_0_False_False_DNA_3.m
| M	testsuite/data/kernel/CommWordString_60_0_False_False_DNA_3.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| M	testsuite/data/kernel/HistogramWordString_60_0_DNA_3_False.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| M	testsuite/data/kernel/MatchWordString_60_0_False_3_DNA_3.m
| M	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| M	testsuite/data/kernel/PolyMatchWordString_60_0_False_3_DNA_3_False.m
| M	testsuite/data/kernel/PolyMatchWordString_60_0_False_3_DNA_3_True.m
| M	testsuite/data/kernel/SalzbergWordString_60_0_DNA_3_False.m
| M	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| M	testsuite/data/kernel/WeightedCommWordString_60_0_False_False_DNA_3.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| M	testsuite/data/preproc/SortUlongString_60_0_False_DNA_CommUlongString_3_False.m
| M	testsuite/data/preproc/SortWordString_60_0_False_DNA_CommWordString_3_False.m
| M	testsuite/data/regression/LibSVR_0017_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_023_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_15_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_30_16_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_30_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_0017_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_023_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_15_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_30_1_15_1en05_Gaussian_001.m
|  
* commit 17654b2e03cfe5aa3f830e0872cd53c11762a474
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 25 17:13:56 2008 +0000
| 
|     - removed immature NEWS items.
| 
| M	src/NEWS
|  
* commit 1792b0dbc5c612ccd7444f201aa3183997856a89
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 25 16:45:42 2008 +0000
| 
|     - updated NEWS in preparation for release 0.6.7.
| 
| M	src/NEWS
|  
* commit 76c235070d5cf3317375282fd6d8be057476b9b0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 24 15:21:24 2008 +0000
| 
|     compile fix introduced by an accidentally inserted 'u'
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 2f880f3c74ddd75cfa0b2728eda3dc9a614e205f
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Nov 14 08:47:44 2008 +0000
| 
|     removed stderr debug outputs
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
|  
* commit f04c02ad87981a564fcf4ccd4599169976a75515
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Nov 8 16:02:05 2008 +0000
| 
|     testsuite:
|     - Added support for alphas and support vectors in MultiClassSVM in tester
|       for static R interface.
| 
| M	testsuite/r/classifier.R
| M	testsuite/r/regression.R
|  
* commit f78f080da5f75f50f4d52352ef340e026286ab1d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 7 22:05:13 2008 +0000
| 
|     testsuite:
|     - Added support for alphas and support vectors in MultiClassSVM in tester
|       for modular octave interface.
| 
| M	testsuite/octave-modular/classifier.m
| M	testsuite/octave-modular/regression.m
| M	testsuite/octave-modular/util/globals.m
|  
* commit 7288978e0925ce401b326e42342315c9a3918463
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 7 21:37:40 2008 +0000
| 
|     testsuite:
|     - Added support for alphas and support vectors in MultiClassSVM in tester
|       for static octave/matlab interface.
| 
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/regression.m
| M	testsuite/matlab_and_octave/util/globals.m
|  
* commit c76c9c750d2e3ae1556ac475940bc49006d50aff
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 7 21:27:29 2008 +0000
| 
|     testsuite:
|     - python keyword 'None' should not appear in classifier test files.
| 
| M	testsuite/generator/classifier.py
|  
* commit 19d2f298be92e15f2e96ccba0c2c01ce8ba583e5
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 7 20:14:36 2008 +0000
| 
|     testsuite:
|     - Added support for alphas and support vectors in MultiClassSVM in tester
|       for static python interface.
| 
| M	testsuite/python/classifier.py
| M	testsuite/python/regression.py
| M	testsuite/python/util.py
|  
* commit 4e5a46fe2f5820eefaac3ded270362daa01f563e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 7 20:13:22 2008 +0000
| 
|     testsuite:
|     - Implemented changes wrt alpha/support vectors in tester for python-modular.
| 
| M	testsuite/python-modular/classifier.py
| M	testsuite/python-modular/regression.py
|  
* commit 5176ee99d6bd4308488ea71315eee8aae351aa32
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 7 20:12:43 2008 +0000
| 
|     testsuite:
|     - Generator does not put endless number of lists of alphas and support
|       vectors into test files anymore (in case of MultiClass), but instead builds
|       a sum of alphas and support vectors for comparison on test.
| 
| M	testsuite/generator/classifier.py
| M	testsuite/generator/fileop.py
| M	testsuite/generator/regression.py
|  
* commit 1227802e0699a008a99e821d52e481dfdbd53dfb
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 7 17:22:32 2008 +0000
| 
|     static interface:
|     - Added command GET_NUM_SVMS for usage by MultiClassSVMs.
|     - Extended command GET_SVM by optional index parameter to determine which SVM
|       to get out of MultiClassSVM.
|     classifier:
|     - Fixed a segfault opportunity in MultiClassSVM.
| 
| M	src/classifier/svm/MultiClassSVM.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUICommands.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 6b01451f5297d88ec82c2594892c272a522639e9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Nov 6 20:45:55 2008 +0000
| 
|     testsuite:
|     - alphas and support vectors for MultiClassSVMS in tester for python-modular.
| 
| M	testsuite/python-modular/classifier.py
| M	testsuite/python-modular/test_one.py
| M	testsuite/python-modular/util.py
|  
* commit 49149ba520ef11c2ee2c267a6b64196a230ac7b4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Nov 6 20:44:55 2008 +0000
| 
|     testsuite:
|     - alphas and support vectors are now supported in generator for MultiClass SVMs
|       like LibSVMMultiClass and GMNMPSVM.
| 
| M	testsuite/generator/classifier.py
| M	testsuite/generator/fileop.py
|  
* commit aff1785bb8935f95015cd09497f8f31719d8246a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Nov 5 23:23:53 2008 +0000
| 
|     testsuite:
|     - Integrated WDSVMOcas into generator.
|     - The way how (RAW)DNA data is created has changed a bit.
| 
| M	testsuite/generator/classifier.py
| M	testsuite/generator/config.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/distance.py
|  
* commit 3e3c07bd43fb7566abdafcb1b73417db867f2f96
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Nov 5 23:22:20 2008 +0000
| 
|     - Made StringBytesFeatures more useable for python-modular.
| 
| M	src/features/StringFeatures.i
| M	src/lib/python_typemaps.i
|  
* commit c4b3f6ee98c86991c5ff28db90149afd764dacf2
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Nov 5 17:05:06 2008 +0000
| 
|     - Fixed improper assignment of labels in constructor of WDSVMOcas leading to
|       segfaults on destruction in (python) modular interface.
|     - Made Little documentation improvement and commented unnecessary printing of
|       weight vector.
| 
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
|  
* commit 8dcfe06bdf680a756f915aadf36c39adc86cb592
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Nov 3 22:39:58 2008 +0000
| 
|     - Added a default value (of NULL) to argument of WDSVMOcas::classify().
|     - Added a debug print to WDSVMOcas::classify_example().
| 
| M	src/classifier/svm/WDSVMOcas.h
|  
* commit fbe1f72f61254568446afb75170e864eb7391fb9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 2 08:22:36 2008 +0000
| 
|     really fix contiguous arrays and also a warning in lib/memory.cpp snprintf %lld requires a long long int argument
| 
| M	src/interface/PythonInterface.cpp
| M	src/lib/memory.cpp
|  
* commit 0eebaf88dfad3541c2c4f88156263b7c311d0811
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 2 08:06:29 2008 +0000
| 
|     potentially better fix, that does not require contiguous vectors
| 
| M	src/interface/PythonInterface.cpp
|  
* commit 9d56cd6fb60eff788620f869d2172a831cb2b05d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 1 23:21:44 2008 +0000
| 
|     move applications one directory up
| 
| M	README
| D	applications/arts/arts.py
| D	applications/arts/convert_artsmat.m
| D	applications/arts/genomic.py
| D	applications/arts/signal_sensor.py
| D	applications/asp/LICENSE
| D	applications/asp/Makefile
| D	applications/asp/NEWS
| D	applications/asp/README
| D	applications/asp/asp
| D	applications/asp/convert_mat.m
| D	applications/asp/dna.fa
| D	applications/asp/genomic.py
| D	applications/asp/model.py
| D	applications/asp/seqdict.py
| D	applications/asp/signal_detectors.py
| D	applications/msplicer/LICENSE
| D	applications/msplicer/Makefile
| D	applications/msplicer/NEWS
| D	applications/msplicer/README
| D	applications/msplicer/content_sensors.py
| D	applications/msplicer/convert_mat.m
| D	applications/msplicer/dna.fa
| D	applications/msplicer/genomic.py
| D	applications/msplicer/model.py
| D	applications/msplicer/msplicer
| D	applications/msplicer/plif.py
| D	applications/msplicer/seqdict.py
| D	applications/msplicer/signal_detectors.py
|  
* commit bc9619c961c020ece1d4269a0c7377bfe8e34bbb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 1 23:17:33 2008 +0000
| 
|     test if array/vector is contigous
| 
| M	src/interface/PythonInterface.cpp
|  
* commit f3fdb0d312f959572723d9f6b17cc3160b1a92f6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Oct 31 16:39:57 2008 +0000
| 
|     - BIG replacement XIX: polished a few calls to external libraries.
| 
| M	src/classifier/LDA.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/Tron.cpp
| M	src/classifier/svm/Tron.h
| M	src/kernel/SigmoidKernel.cpp
| M	src/preproc/PCACut.cpp
| M	src/regression/KRR.cpp
| M	src/regression/svr/SVR_light.cpp
|  
* commit f19fe65ee6ac21a148e1be2b51891871abb91af6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Oct 31 15:02:21 2008 +0000
| 
|     kernel:
|     - Removed unused method declaration from WeightedDegreeStringKernel.
| 
| M	src/kernel/WeightedDegreeStringKernel.h
|  
* commit d4be93081b7d91c1e4cfc8512e40ad621ad9b204
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 30 16:16:42 2008 +0000
| 
|     - Updated testsuite generator to reflect changes made to enums in
|       lib/features.
| 
| M	testsuite/generator/distribution.py
| M	testsuite/generator/featop.py
| M	testsuite/generator/kernel.py
|  
* commit d3845733cdd3774ae94e3c31926da58f2d482319
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Oct 29 22:45:51 2008 +0000
| 
|     - BIG replacement XVIII: Fixed an earlier introduced bug and documented the
|       line of code accordingly.
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit f22b6cdb099a34c4b6444b651181717125d0ff96
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Oct 29 19:19:56 2008 +0000
| 
|     - BIG replacement XVII: our swig setup needs a bit assistance to recognise
|       the new types.
| 
| M	src/.generate_link_dependencies.py
| M	src/lib/common.i
|  
* commit 9079c68d48adef97228f234bb97e33fa046814c4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Oct 29 16:11:55 2008 +0000
| 
|     - BIG replacement XVI: fixed bug introduced into OligoKernel.
| 
| M	src/kernel/OligoKernel.cpp
|  
* commit 2b4f230d71a785836758f159751be22aa0017358
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Oct 29 14:39:48 2008 +0000
| 
|     - BIG replacement XV: sorry, need to concentrate more.
| 
| M	src/lib/common.h
|  
* commit 4f8bf1e748b5fb7bcb5eb917a0e0ded937beaf67
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Oct 29 14:34:57 2008 +0000
| 
|     - BIG replacement XIV: added int8_t ifdef SUNOS
| 
| M	src/lib/common.h
|  
* commit 1f680146c2767c30dd051a8537a630d3c570413b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Oct 28 22:41:36 2008 +0000
| 
|     kernel:
|     - Fixed compiler warning about missing doc in OligoKernel.
|     - Compile fix to previous change.
| 
| M	src/kernel/OligoKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
|  
* commit 0193d7f06e70b397a787e607df2b5f6e3a6ed43c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Oct 28 22:37:18 2008 +0000
| 
|     kernel:
|     - Eliminated unnecessary variable shortcut in WD kernels.
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit 6e1bc10baf74db75089a621985dd6beb9c17ffdd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 28 22:23:20 2008 +0000
| 
|     conversion of matlab data for arts
| 
| A	applications/arts/arts.py
| A	applications/arts/convert_artsmat.m
| A	applications/arts/genomic.py
| A	applications/arts/signal_sensor.py
|  
* commit c4743eedc0de59262a952cf3857a15085ed13a72
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Oct 28 21:56:55 2008 +0000
| 
|     - BIG replacement XIII: double -> float64_t (where (hopefully) appropriate)
| 
| M	src/classifier/LDA.cpp
| M	src/classifier/LinearClassifier.h
| M	src/classifier/Perceptron.cpp
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/svm/GMNPSVM.cpp
| M	src/classifier/svm/GNPPSVM.cpp
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVMMultiClass.cpp
| M	src/classifier/svm/LibSVMOneClass.cpp
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/Optimizer.h
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMOcas.h
| M	src/classifier/svm/SVMSGD.cpp
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_libsvm.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/SVM_linear.cpp
| M	src/classifier/svm/SVM_linear.h
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/Tron.cpp
| M	src/classifier/svm/Tron.h
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/classifier/svm/gmnplib.cpp
| M	src/classifier/svm/gmnplib.h
| M	src/classifier/svm/gnpplib.cpp
| M	src/classifier/svm/gnpplib.h
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpdtsolve.h
| M	src/classifier/svm/gpm.cpp
| M	src/classifier/svm/gpm.h
| M	src/classifier/svm/libocas.cpp
| M	src/classifier/svm/libocas.h
| M	src/classifier/svm/pr_loqo.cpp
| M	src/classifier/svm/pr_loqo.h
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/classifier/svm/qpssvmlib.cpp
| M	src/classifier/svm/qpssvmlib.h
| M	src/classifier/svm/ssl.cpp
| M	src/classifier/svm/ssl.h
| M	src/clustering/KMeans.cpp
| M	src/clustering/KMeans.h
| M	src/distance/BrayCurtisDistance.cpp
| M	src/distance/CanberraMetric.cpp
| M	src/distance/ChebyshewMetric.cpp
| M	src/distance/ChiSquareDistance.cpp
| M	src/distance/CosineDistance.cpp
| M	src/distance/Distance.cpp
| M	src/distance/EuclidianDistance.h
| M	src/distance/GeodesicMetric.cpp
| M	src/distance/JensenMetric.cpp
| M	src/distance/ManhattanMetric.cpp
| M	src/distance/MinkowskiMetric.cpp
| M	src/distance/SparseEuclidianDistance.h
| M	src/distance/TanimotoDistance.cpp
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/features/Alphabet.cpp
| M	src/features/FKFeatures.cpp
| M	src/features/FKFeatures.h
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/TOPFeatures.cpp
| M	src/features/WordFeatures.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIMath.cpp
| M	src/kernel/AvgDiagKernelNormalizer.h
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/GaussianShiftKernel.cpp
| M	src/kernel/GaussianShiftKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearStringKernel.cpp
| M	src/kernel/LinearStringKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/MindyGramKernel.h
| M	src/kernel/OligoKernel.cpp
| M	src/kernel/OligoKernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/Time.cpp
| M	src/lib/Time.h
| M	src/lib/Trie.h
| M	src/lib/octave_typemaps.i
| M	src/lib/python_typemaps.i
| M	src/lib/r_typemaps.i
| M	src/preproc/NormDerivativeLem3.cpp
| M	src/preproc/PCACut.cpp
| M	src/preproc/PCACut.h
| M	src/preproc/PruneVarSubMean.cpp
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
| M	src/structure/DynProg.cpp
|  
* commit 69afe154eb38c86a03e4d26f70327e1ad16df68b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Oct 28 19:22:40 2008 +0000
| 
|     - BIG replacement XII: DREAL -> float64_t
| 
| M	src/.scrub_docstrings.py
| M	src/README.developer
| M	src/classifier/Classifier.h
| M	src/classifier/KNN.cpp
| M	src/classifier/KNN.h
| M	src/classifier/KernelPerceptron.cpp
| M	src/classifier/KernelPerceptron.h
| M	src/classifier/LDA.cpp
| M	src/classifier/LDA.h
| M	src/classifier/LPBoost.cpp
| M	src/classifier/LPBoost.h
| M	src/classifier/LPM.cpp
| M	src/classifier/LPM.h
| M	src/classifier/LinearClassifier.h
| M	src/classifier/LinearClassifier.i
| M	src/classifier/Perceptron.cpp
| M	src/classifier/Perceptron.h
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/SparseLinearClassifier.h
| M	src/classifier/SparseLinearClassifier.i
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/SubGradientLPM.h
| M	src/classifier/svm/CPLEXSVM.cpp
| M	src/classifier/svm/GMNPSVM.cpp
| M	src/classifier/svm/GMNPSVM.h
| M	src/classifier/svm/GNPPSVM.cpp
| M	src/classifier/svm/GNPPSVM.h
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/GPBTSVM.h
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/LibLinear.h
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVM.h
| M	src/classifier/svm/LibSVMMultiClass.cpp
| M	src/classifier/svm/LibSVMMultiClass.h
| M	src/classifier/svm/LibSVMOneClass.cpp
| M	src/classifier/svm/LibSVMOneClass.h
| M	src/classifier/svm/MPDSVM.cpp
| M	src/classifier/svm/MPDSVM.h
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/classifier/svm/MultiClassSVM.h
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM.i
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMLin.h
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMOcas.h
| M	src/classifier/svm/SVMSGD.cpp
| M	src/classifier/svm/SVMSGD.h
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/SVM_linear.h
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/classifier/svm/gmnplib.cpp
| M	src/classifier/svm/gmnplib.h
| M	src/classifier/svm/gnpplib.cpp
| M	src/classifier/svm/gnpplib.h
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/classifier/svm/qpbsvmlib.h
| M	src/classifier/svm/ssl.cpp
| M	src/classifier/svm/ssl.h
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/Hierarchical.h
| M	src/clustering/Hierarchical.i
| M	src/clustering/KMeans.cpp
| M	src/clustering/KMeans.h
| M	src/clustering/KMeans.i
| M	src/distance/BrayCurtisDistance.cpp
| M	src/distance/BrayCurtisDistance.h
| M	src/distance/CanberraMetric.cpp
| M	src/distance/CanberraMetric.h
| M	src/distance/CanberraWordDistance.cpp
| M	src/distance/CanberraWordDistance.h
| M	src/distance/ChebyshewMetric.cpp
| M	src/distance/ChebyshewMetric.h
| M	src/distance/ChiSquareDistance.cpp
| M	src/distance/ChiSquareDistance.h
| M	src/distance/CosineDistance.cpp
| M	src/distance/CosineDistance.h
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/distance/Distance.i
| M	src/distance/EuclidianDistance.cpp
| M	src/distance/EuclidianDistance.h
| M	src/distance/GeodesicMetric.cpp
| M	src/distance/GeodesicMetric.h
| M	src/distance/HammingWordDistance.cpp
| M	src/distance/HammingWordDistance.h
| M	src/distance/JensenMetric.cpp
| M	src/distance/JensenMetric.h
| M	src/distance/ManhattanMetric.cpp
| M	src/distance/ManhattanMetric.h
| M	src/distance/ManhattanWordDistance.cpp
| M	src/distance/ManhattanWordDistance.h
| M	src/distance/MinkowskiMetric.cpp
| M	src/distance/MinkowskiMetric.h
| M	src/distance/RealDistance.h
| M	src/distance/SimpleDistance.h
| M	src/distance/SimpleDistance.i
| M	src/distance/SparseDistance.h
| M	src/distance/SparseDistance.i
| M	src/distance/SparseEuclidianDistance.cpp
| M	src/distance/SparseEuclidianDistance.h
| M	src/distance/StringDistance.h
| M	src/distance/StringDistance.i
| M	src/distance/TanimotoDistance.cpp
| M	src/distance/TanimotoDistance.h
| M	src/distributions/Distribution.cpp
| M	src/distributions/Distribution.h
| M	src/distributions/Distribution.i
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/histogram/Histogram.i
| M	src/distributions/hmm/GHMM.cpp
| M	src/distributions/hmm/GHMM.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/distributions/hmm/LinearHMM.h
| M	src/distributions/hmm/LinearHMM.i
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
| M	src/evaluation/PerformanceMeasures.i
| M	src/features/FKFeatures.cpp
| M	src/features/FKFeatures.h
| M	src/features/Features.h
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/Labels.i
| M	src/features/RealFeatures.cpp
| M	src/features/RealFeatures.h
| M	src/features/RealFeatures.i
| M	src/features/RealFileFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.cpp
| M	src/features/TOPFeatures.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIDistance.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUIStructure.cpp
| M	src/guilib/GUIStructure.h
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/AUCKernel.h
| M	src/kernel/AvgDiagKernelNormalizer.h
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.cpp
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/CustomKernel.i
| M	src/kernel/DiagKernel.cpp
| M	src/kernel/DiagKernel.h
| M	src/kernel/DiceKernelNormalizer.h
| M	src/kernel/DistanceKernel.cpp
| M	src/kernel/DistanceKernel.h
| M	src/kernel/FirstElementKernelNormalizer.h
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/GaussianShiftKernel.cpp
| M	src/kernel/GaussianShiftKernel.h
| M	src/kernel/GaussianShortRealKernel.cpp
| M	src/kernel/GaussianShortRealKernel.h
| M	src/kernel/HistogramWordStringKernel.cpp
| M	src/kernel/HistogramWordStringKernel.h
| M	src/kernel/IdentityKernelNormalizer.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/Kernel.i
| M	src/kernel/KernelNormalizer.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearKernel.i
| M	src/kernel/LinearStringKernel.cpp
| M	src/kernel/LinearStringKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalAlignmentStringKernel.cpp
| M	src/kernel/LocalAlignmentStringKernel.h
| M	src/kernel/LocalityImprovedStringKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.h
| M	src/kernel/MatchWordStringKernel.cpp
| M	src/kernel/MatchWordStringKernel.h
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
| M	src/kernel/OligoKernel.cpp
| M	src/kernel/OligoKernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchStringKernel.h
| M	src/kernel/PolyMatchWordStringKernel.cpp
| M	src/kernel/PolyMatchWordStringKernel.h
| M	src/kernel/PyramidChi2.cpp
| M	src/kernel/PyramidChi2.h
| M	src/kernel/SalzbergWordStringKernel.cpp
| M	src/kernel/SalzbergWordStringKernel.h
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseKernel.i
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/SqrtDiagKernelNormalizer.h
| M	src/kernel/StringKernel.h
| M	src/kernel/StringKernel.i
| M	src/kernel/TanimotoKernelNormalizer.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.i
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.i
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.i
| M	src/lib/Array.i
| M	src/lib/Array2.i
| M	src/lib/Array3.i
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
| M	src/lib/DynamicArray.i
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
| M	src/lib/common.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/octave_typemaps.i
| M	src/lib/python_typemaps.i
| M	src/lib/r_typemaps.i
| M	src/preproc/LogPlusOne.cpp
| M	src/preproc/LogPlusOne.h
| M	src/preproc/NormDerivativeLem3.cpp
| M	src/preproc/NormDerivativeLem3.h
| M	src/preproc/NormOne.cpp
| M	src/preproc/NormOne.h
| M	src/preproc/PCACut.cpp
| M	src/preproc/PCACut.h
| M	src/preproc/PruneVarSubMean.cpp
| M	src/preproc/PruneVarSubMean.h
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SimplePreProc.i
| M	src/regression/KRR.cpp
| M	src/regression/KRR.h
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/LibSVR.h
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/DynProg.i
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
| M	src/structure/Plif.i
| M	src/structure/PlifArray.cpp
| M	src/structure/PlifArray.h
| M	src/structure/PlifBase.h
|  
* commit f38000f2112ae0b64824c869ba5c69016195f934
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Oct 27 21:26:22 2008 +0000
| 
|     - BIG replacement XI: LONGREAL/long double -> float128_t
| 
| M	src/.scrub_docstrings.py
| M	src/README.developer
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/features/StringFeatures.h
| M	src/lib/Mathematics.h
| M	src/lib/common.h
| M	src/lib/python_typemaps.i
|  
* commit 585b1c7589de869452a7377b095289ff229281b6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Oct 27 21:11:51 2008 +0000
| 
|     - BIG replacement X: SHORTREAL/float -> float32_t
| 
| M	src/.scrub_docstrings.py
| M	src/README.developer
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpm.cpp
| M	src/classifier/svm/gpm.h
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/distributions/hmm/HMM.cpp
| M	src/features/ShortRealFeatures.cpp
| M	src/features/ShortRealFeatures.h
| M	src/features/ShortRealFeatures.i
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/GaussianShortRealKernel.cpp
| M	src/kernel/GaussianShortRealKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/LocalAlignmentStringKernel.cpp
| M	src/kernel/LocalAlignmentStringKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Array.h
| M	src/lib/Array.i
| M	src/lib/Array2.h
| M	src/lib/Array2.i
| M	src/lib/Array3.h
| M	src/lib/Array3.i
| M	src/lib/DynamicArray.i
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/Trie.h
| M	src/lib/common.h
| M	src/lib/io.cpp
| M	src/lib/octave_typemaps.i
| M	src/lib/python_typemaps.i
| M	src/lib/r_typemaps.i
|  
* commit 55b602519f8d08937697bb96299c1b3901ccc963
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Oct 26 22:50:20 2008 +0000
| 
|     - BIG replacement IX: short int -> int16_t, long int -> int32_t, unsigned short
|       -> uint16_t, unsigned long -> uint32_t
| 
| M	src/classifier/svm/MPDSVM.cpp
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/gnpplib.cpp
| M	src/classifier/svm/gnpplib.h
| M	src/classifier/svm/gpdt.cpp
| M	src/features/StringFeatures.h
| M	src/lib/Mathematics.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit b115f53fe79da790ae14aeb6b1793c46bb4240d0
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Oct 26 22:31:22 2008 +0000
| 
|     - BIG replacement VIII: SHORT -> int16_t
| 
| M	src/.scrub_docstrings.py
| M	src/distance/SimpleDistance.h
| M	src/distance/SparseDistance.h
| M	src/distance/StringDistance.h
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/Features.h
| M	src/features/ShortFeatures.cpp
| M	src/features/ShortFeatures.h
| M	src/features/ShortFeatures.i
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/guilib/GUIFeatures.cpp
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SparseKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/StringKernel.i
| M	src/lib/Array.i
| M	src/lib/Array2.i
| M	src/lib/Array3.i
| M	src/lib/DynamicArray.i
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/common.h
| M	src/lib/octave_typemaps.i
| M	src/lib/python_typemaps.i
| M	src/lib/r_typemaps.i
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SimplePreProc.i
| M	src/structure/DynProg.h
|  
* commit 9bc010f7ac7236a42e7cc95868fa2c7b611cbd34
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Oct 26 21:29:28 2008 +0000
| 
|     - BIG replacement VII: LONG -> int64_t
| 
| M	src/.scrub_docstrings.py
| M	src/README.developer
| M	src/base/Version.h
| M	src/classifier/svm/gmnplib.cpp
| M	src/classifier/svm/gmnplib.h
| M	src/classifier/svm/gnpplib.cpp
| M	src/classifier/svm/gnpplib.h
| M	src/distance/Distance.cpp
| M	src/distributions/hmm/HMM.cpp
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/Alphabet.i
| M	src/features/ByteFeatures.cpp
| M	src/features/CharFeatures.cpp
| M	src/features/IntFeatures.cpp
| M	src/features/Labels.cpp
| M	src/features/MindyGramFeatures.cpp
| M	src/features/RealFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/ShortRealFeatures.cpp
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/guilib/GUIHMM.cpp
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/SalzbergWordStringKernel.h
| M	src/lib/Array.i
| M	src/lib/Array2.i
| M	src/lib/Array3.i
| M	src/lib/Cache.h
| M	src/lib/Cplex.cpp
| M	src/lib/DynamicArray.i
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.cpp
| M	src/lib/Time.h
| M	src/lib/common.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/python_typemaps.i
|  
* commit 794bd588f1b533552b5cc5dc3d9302c1f4c8c61c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Oct 26 20:53:10 2008 +0000
| 
|     - BIG replacement VI: ULONG -> uint64_t; unsigned long long int -> uintmax_t
| 
| M	src/.scrub_docstrings.py
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/distance/SimpleDistance.h
| M	src/distance/SparseDistance.h
| M	src/distance/StringDistance.h
| M	src/distance/StringDistance.i
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIPreProc.cpp
| M	src/interface/SGInterface.cpp
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SparseKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/StringKernel.i
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/lib/Array.i
| M	src/lib/Array2.i
| M	src/lib/Array3.i
| M	src/lib/DynamicArray.i
| M	src/lib/SimpleFile.h
| M	src/lib/Trie.h
| M	src/lib/common.h
| M	src/lib/memory.cpp
| M	src/lib/python_typemaps.i
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SimplePreProc.i
| M	src/preproc/SortUlongString.cpp
| M	src/preproc/SortUlongString.h
| M	src/preproc/StringPreProc.h
| M	src/preproc/StringPreProc.i
|  
* commit 7d1dcac4f75551d9a2b6a4736f3fc7d07fbeae4b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Oct 26 19:16:10 2008 +0000
| 
|     - BIG replacement V: INT/int -> int32_t/int
| 
| M	src/.scrub_docstrings.py
| M	src/README.developer
| M	src/base/Parallel.h
| M	src/base/SGObject.h
| M	src/base/Version.cpp
| M	src/base/Version.h
| M	src/classifier/Classifier.cpp
| M	src/classifier/Classifier.h
| M	src/classifier/KNN.cpp
| M	src/classifier/KNN.h
| M	src/classifier/KernelPerceptron.cpp
| M	src/classifier/KernelPerceptron.h
| M	src/classifier/LDA.cpp
| M	src/classifier/LPBoost.cpp
| M	src/classifier/LPBoost.h
| M	src/classifier/LPM.cpp
| M	src/classifier/LinearClassifier.cpp
| M	src/classifier/LinearClassifier.h
| M	src/classifier/LinearClassifier.i
| M	src/classifier/Perceptron.cpp
| M	src/classifier/Perceptron.h
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/SparseLinearClassifier.cpp
| M	src/classifier/SparseLinearClassifier.h
| M	src/classifier/SparseLinearClassifier.i
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/SubGradientLPM.h
| M	src/classifier/svm/CPLEXSVM.cpp
| M	src/classifier/svm/GMNPSVM.cpp
| M	src/classifier/svm/GNPPSVM.cpp
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVMMultiClass.cpp
| M	src/classifier/svm/LibSVMOneClass.cpp
| M	src/classifier/svm/MPDSVM.cpp
| M	src/classifier/svm/MPDSVM.h
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/classifier/svm/MultiClassSVM.h
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/Optimizer.h
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM.i
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMOcas.h
| M	src/classifier/svm/SVMSGD.cpp
| M	src/classifier/svm/SVMSGD.h
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_libsvm.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/SVM_linear.cpp
| M	src/classifier/svm/SVM_linear.h
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/Tron.cpp
| M	src/classifier/svm/Tron.h
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/classifier/svm/gmnplib.cpp
| M	src/classifier/svm/gmnplib.h
| M	src/classifier/svm/gnpplib.cpp
| M	src/classifier/svm/gnpplib.h
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpdtsolve.h
| M	src/classifier/svm/gpm.cpp
| M	src/classifier/svm/gpm.h
| M	src/classifier/svm/libocas.cpp
| M	src/classifier/svm/pr_loqo.cpp
| M	src/classifier/svm/pr_loqo.h
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/classifier/svm/qpbsvmlib.h
| M	src/classifier/svm/qpssvmlib.cpp
| M	src/classifier/svm/qpssvmlib.h
| M	src/classifier/svm/ssl.cpp
| M	src/classifier/svm/ssl.h
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/Hierarchical.h
| M	src/clustering/Hierarchical.i
| M	src/clustering/KMeans.cpp
| M	src/clustering/KMeans.h
| M	src/clustering/KMeans.i
| M	src/distance/BrayCurtisDistance.cpp
| M	src/distance/BrayCurtisDistance.h
| M	src/distance/CanberraMetric.cpp
| M	src/distance/CanberraMetric.h
| M	src/distance/CanberraWordDistance.cpp
| M	src/distance/CanberraWordDistance.h
| M	src/distance/ChebyshewMetric.cpp
| M	src/distance/ChebyshewMetric.h
| M	src/distance/ChiSquareDistance.cpp
| M	src/distance/ChiSquareDistance.h
| M	src/distance/CosineDistance.cpp
| M	src/distance/CosineDistance.h
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/distance/Distance.i
| M	src/distance/EuclidianDistance.cpp
| M	src/distance/EuclidianDistance.h
| M	src/distance/GeodesicMetric.cpp
| M	src/distance/GeodesicMetric.h
| M	src/distance/HammingWordDistance.cpp
| M	src/distance/HammingWordDistance.h
| M	src/distance/JensenMetric.cpp
| M	src/distance/JensenMetric.h
| M	src/distance/ManhattanMetric.cpp
| M	src/distance/ManhattanMetric.h
| M	src/distance/ManhattanWordDistance.cpp
| M	src/distance/ManhattanWordDistance.h
| M	src/distance/MinkowskiMetric.cpp
| M	src/distance/MinkowskiMetric.h
| M	src/distance/SimpleDistance.h
| M	src/distance/SimpleDistance.i
| M	src/distance/SparseDistance.h
| M	src/distance/SparseDistance.i
| M	src/distance/SparseEuclidianDistance.cpp
| M	src/distance/SparseEuclidianDistance.h
| M	src/distance/StringDistance.h
| M	src/distance/StringDistance.i
| M	src/distance/TanimotoDistance.cpp
| M	src/distance/TanimotoDistance.h
| M	src/distributions/Distribution.cpp
| M	src/distributions/Distribution.h
| M	src/distributions/Distribution.i
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/histogram/Histogram.i
| M	src/distributions/hmm/GHMM.cpp
| M	src/distributions/hmm/GHMM.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/distributions/hmm/LinearHMM.h
| M	src/distributions/hmm/LinearHMM.i
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
| M	src/evaluation/PerformanceMeasures.i
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/Alphabet.i
| M	src/features/ByteFeatures.cpp
| M	src/features/ByteFeatures.h
| M	src/features/ByteFeatures.i
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.h
| M	src/features/CharFeatures.i
| M	src/features/CombinedFeatures.h
| M	src/features/DummyFeatures.h
| M	src/features/FKFeatures.cpp
| M	src/features/FKFeatures.h
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/features/IntFeatures.cpp
| M	src/features/IntFeatures.h
| M	src/features/IntFeatures.i
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/Labels.i
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/features/RealFeatures.cpp
| M	src/features/RealFeatures.h
| M	src/features/RealFeatures.i
| M	src/features/RealFileFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.cpp
| M	src/features/ShortFeatures.h
| M	src/features/ShortFeatures.i
| M	src/features/ShortRealFeatures.cpp
| M	src/features/ShortRealFeatures.h
| M	src/features/ShortRealFeatures.i
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/features/TOPFeatures.cpp
| M	src/features/TOPFeatures.h
| M	src/features/WordFeatures.cpp
| M	src/features/WordFeatures.h
| M	src/features/WordFeatures.i
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUIStructure.cpp
| M	src/guilib/GUIStructure.h
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/AUCKernel.h
| M	src/kernel/AvgDiagKernelNormalizer.h
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/CustomKernel.i
| M	src/kernel/DiagKernel.cpp
| M	src/kernel/DiagKernel.h
| M	src/kernel/DiceKernelNormalizer.h
| M	src/kernel/DistanceKernel.cpp
| M	src/kernel/DistanceKernel.h
| M	src/kernel/FirstElementKernelNormalizer.h
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/GaussianShiftKernel.cpp
| M	src/kernel/GaussianShiftKernel.h
| M	src/kernel/GaussianShortRealKernel.cpp
| M	src/kernel/GaussianShortRealKernel.h
| M	src/kernel/HistogramWordStringKernel.cpp
| M	src/kernel/HistogramWordStringKernel.h
| M	src/kernel/IdentityKernelNormalizer.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/Kernel.i
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/KernelNormalizer.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearKernel.i
| M	src/kernel/LinearStringKernel.cpp
| M	src/kernel/LinearStringKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalAlignmentStringKernel.cpp
| M	src/kernel/LocalAlignmentStringKernel.h
| M	src/kernel/LocalityImprovedStringKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.h
| M	src/kernel/MatchWordStringKernel.cpp
| M	src/kernel/MatchWordStringKernel.h
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
| M	src/kernel/OligoKernel.cpp
| M	src/kernel/OligoKernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchStringKernel.h
| M	src/kernel/PolyMatchWordStringKernel.cpp
| M	src/kernel/PolyMatchWordStringKernel.h
| M	src/kernel/PyramidChi2.cpp
| M	src/kernel/PyramidChi2.h
| M	src/kernel/SalzbergWordStringKernel.cpp
| M	src/kernel/SalzbergWordStringKernel.h
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/SqrtDiagKernelNormalizer.h
| M	src/kernel/StringKernel.h
| M	src/kernel/StringKernel.i
| M	src/kernel/TanimotoKernelNormalizer.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.i
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.i
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.i
| M	src/lib/Array.h
| M	src/lib/Array.i
| M	src/lib/Array2.h
| M	src/lib/Array2.i
| M	src/lib/Array3.h
| M	src/lib/Array3.i
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
| M	src/lib/DynamicArray.h
| M	src/lib/DynamicArray.i
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/List.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
| M	src/lib/common.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/matlab.h
| M	src/lib/octave_typemaps.i
| M	src/lib/python_typemaps.i
| M	src/lib/r_typemaps.i
| M	src/preproc/LogPlusOne.cpp
| M	src/preproc/LogPlusOne.h
| M	src/preproc/NormDerivativeLem3.cpp
| M	src/preproc/NormDerivativeLem3.h
| M	src/preproc/NormOne.cpp
| M	src/preproc/NormOne.h
| M	src/preproc/PCACut.cpp
| M	src/preproc/PCACut.h
| M	src/preproc/PruneVarSubMean.cpp
| M	src/preproc/PruneVarSubMean.h
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SortUlongString.cpp
| M	src/preproc/SortUlongString.h
| M	src/preproc/SortWordString.cpp
| M	src/preproc/SortWordString.h
| M	src/preproc/SparsePreProc.h
| M	src/preproc/StringPreProc.h
| M	src/regression/KRR.cpp
| M	src/regression/KRR.h
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/DynProg.i
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
| M	src/structure/Plif.i
| M	src/structure/PlifArray.cpp
| M	src/structure/PlifArray.h
| M	src/structure/PlifBase.h
|  
* commit 75a11b04e40a4db14c2015d374b475d443ec3c49
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 25 20:53:10 2008 +0000
| 
|     add Nicolas Pinto's swig extension to dummyfeatures
| 
| A	src/features/DummyFeatures.i
| M	src/features/Features.i
|  
* commit 1c5ee039b8dcaeb2204be0599bc7cc4527c65528
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 25 17:17:06 2008 +0000
| 
|     - BIG replacement IV: UINT -> uint32_t
| 
| M	src/.scrub_docstrings.py
| M	src/README.developer
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/RealFileFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/interface/SGInterface.cpp
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/lib/Array.i
| M	src/lib/Array2.i
| M	src/lib/Array3.i
| M	src/lib/DynamicArray.i
| M	src/lib/File.cpp
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/common.h
| M	src/lib/python_typemaps.i
| M	src/preproc/PCACut.cpp
| M	src/preproc/PruneVarSubMean.cpp
|  
* commit ee2bc50dbfde3201ff137c218c7ff82fbf6df3ce
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 25 16:36:35 2008 +0000
| 
|     - BIG replacement III: WORD -> uint16_t
| 
| M	src/.scrub_docstrings.py
| M	src/README.developer
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/distance/CanberraWordDistance.cpp
| M	src/distance/CanberraWordDistance.h
| M	src/distance/HammingWordDistance.cpp
| M	src/distance/HammingWordDistance.h
| M	src/distance/ManhattanWordDistance.cpp
| M	src/distance/ManhattanWordDistance.h
| M	src/distance/SimpleDistance.h
| M	src/distance/SimpleDistance.i
| M	src/distance/SparseDistance.h
| M	src/distance/SparseDistance.i
| M	src/distance/StringDistance.h
| M	src/distance/StringDistance.i
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/distributions/hmm/LinearHMM.h
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/FKFeatures.cpp
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/features/WordFeatures.cpp
| M	src/features/WordFeatures.h
| M	src/features/WordFeatures.i
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPreProc.cpp
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/AUCKernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/HistogramWordStringKernel.cpp
| M	src/kernel/HistogramWordStringKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/MatchWordStringKernel.cpp
| M	src/kernel/MatchWordStringKernel.h
| M	src/kernel/PolyMatchWordStringKernel.cpp
| M	src/kernel/PolyMatchWordStringKernel.h
| M	src/kernel/SalzbergWordStringKernel.cpp
| M	src/kernel/SalzbergWordStringKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseKernel.i
| M	src/kernel/StringKernel.h
| M	src/kernel/StringKernel.i
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/lib/Array.i
| M	src/lib/Array2.i
| M	src/lib/Array3.i
| M	src/lib/DynamicArray.i
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/Mathematics.h
| M	src/lib/common.h
| M	src/lib/octave_typemaps.i
| M	src/lib/python_typemaps.i
| M	src/lib/r_typemaps.i
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SimplePreProc.i
| M	src/preproc/SortWordString.cpp
| M	src/preproc/SortWordString.h
| M	src/preproc/StringPreProc.h
| M	src/preproc/StringPreProc.i
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit ffe8562a69ff7408bc4101fbe9d1e8dbc3e042e6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 25 15:38:14 2008 +0000
| 
|     - Fixed wrongly defined uint8_t for SUN OS.
| 
| M	src/lib/common.h
|  
* commit ba70e779f6cb7229f1e66184efbc1e85a62d840a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Oct 24 22:07:21 2008 +0000
| 
|     - BIG replacement II: BYTE -> uint8_t
| 
| M	src/.scrub_docstrings.py
| M	src/README.developer
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/SubGradientLPM.h
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/distance/SimpleDistance.h
| M	src/distance/SparseDistance.h
| M	src/distance/StringDistance.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.cpp
| M	src/features/ByteFeatures.h
| M	src/features/ByteFeatures.i
| M	src/features/MindyGramFeatures.h
| M	src/features/MindyGramFeatures.i
| M	src/features/RealFileFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/features/WordFeatures.cpp
| M	src/features/WordFeatures.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SparseKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/StringKernel.i
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/lib/Array.i
| M	src/lib/Array2.i
| M	src/lib/Array3.i
| M	src/lib/DynamicArray.i
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/Trie.h
| M	src/lib/common.h
| M	src/lib/octave_typemaps.i
| M	src/lib/python_typemaps.i
| M	src/lib/r_typemaps.i
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SimplePreProc.i
| M	src/preproc/StringPreProc.h
| M	src/preproc/StringPreProc.i
| M	src/structure/DynProg.h
|  
* commit e339e38811219d9477e5b471c8fb2a4408aa9fef
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Oct 24 20:27:13 2008 +0000
| 
|     - BIG replacement I: CHAR -> char
| 
| M	src/.scrub_docstrings.py
| M	src/README.developer
| M	src/base/Version.cpp
| M	src/base/Version.h
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/pr_loqo.cpp
| M	src/distance/BrayCurtisDistance.h
| M	src/distance/CanberraMetric.h
| M	src/distance/CanberraWordDistance.h
| M	src/distance/ChebyshewMetric.h
| M	src/distance/ChiSquareDistance.h
| M	src/distance/CosineDistance.h
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/distance/EuclidianDistance.h
| M	src/distance/GeodesicMetric.h
| M	src/distance/HammingWordDistance.h
| M	src/distance/JensenMetric.h
| M	src/distance/ManhattanMetric.h
| M	src/distance/ManhattanWordDistance.h
| M	src/distance/MinkowskiMetric.h
| M	src/distance/SimpleDistance.h
| M	src/distance/SimpleDistance.i
| M	src/distance/SparseDistance.h
| M	src/distance/SparseDistance.i
| M	src/distance/SparseEuclidianDistance.h
| M	src/distance/StringDistance.h
| M	src/distance/StringDistance.i
| M	src/distance/TanimotoDistance.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.cpp
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.h
| M	src/features/CharFeatures.i
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/features/IntFeatures.cpp
| M	src/features/IntFeatures.h
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/features/MindyGramFeatures.i
| M	src/features/RealFeatures.cpp
| M	src/features/RealFeatures.h
| M	src/features/RealFileFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.cpp
| M	src/features/ShortFeatures.h
| M	src/features/ShortRealFeatures.cpp
| M	src/features/ShortRealFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/features/WordFeatures.cpp
| M	src/features/WordFeatures.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIDistance.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUILabels.cpp
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUIStructure.cpp
| M	src/guilib/GUIStructure.h
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/kernel/AUCKernel.h
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.h
| M	src/kernel/DiagKernel.h
| M	src/kernel/DistanceKernel.h
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/GaussianKernel.h
| M	src/kernel/GaussianShiftKernel.h
| M	src/kernel/GaussianShortRealKernel.h
| M	src/kernel/HistogramWordStringKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearStringKernel.cpp
| M	src/kernel/LinearStringKernel.h
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalAlignmentStringKernel.cpp
| M	src/kernel/LocalAlignmentStringKernel.h
| M	src/kernel/LocalityImprovedStringKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.h
| M	src/kernel/MatchWordStringKernel.h
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
| M	src/kernel/OligoKernel.cpp
| M	src/kernel/OligoKernel.h
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchStringKernel.h
| M	src/kernel/PolyMatchWordStringKernel.h
| M	src/kernel/PyramidChi2.h
| M	src/kernel/SalzbergWordStringKernel.h
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/StringKernel.i
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/lib/Array.i
| M	src/lib/Array2.i
| M	src/lib/Array3.i
| M	src/lib/DynamicArray.i
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/SimpleFile.h
| M	src/lib/common.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/octave_typemaps.i
| M	src/lib/python_typemaps.i
| M	src/lib/r_typemaps.i
| M	src/preproc/PreProc.cpp
| M	src/preproc/PreProc.h
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SimplePreProc.i
| M	src/preproc/SparsePreProc.h
| M	src/preproc/StringPreProc.h
| M	src/preproc/StringPreProc.i
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/DynProg.i
|  
* commit a4c75b045445fe5bba9af3afc87feec8343d8b54
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Oct 24 18:47:43 2008 +0000
| 
|     library:
|     - Removed unnecessary P_* typedefs.
| 
| M	src/lib/common.h
|  
* commit 02d22866ecaae69df07d702ec091130fd38c9c3c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 24 17:04:02 2008 +0000
| 
|     Integrate Chen Guohua's glpk,lpsolve detection
| 
| M	src/configure
|  
* commit cee74dc4664c33aaac652cc2e315ffe623652ef5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 21 10:47:55 2008 +0000
| 
|     lower loglevel for Choldc failed, matrix not pd message, as we are cleanly dealing with that case anyways
| 
| M	src/classifier/svm/pr_loqo.cpp
|  
* commit 14bcd95efb061db603d83741ce1d8c126b151e7b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 20 11:41:32 2008 +0000
| 
|     potential fix for vojtechs multiclass svm as reported by alexander binder
| 
| M	src/classifier/svm/GMNPSVM.cpp
|  
* commit 96e086cd21b0ba255cdcced9b6483ec475639cec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 16 08:19:14 2008 +0000
| 
|     complete rename
| 
| A	applications/asp/asp
| D	applications/asp/asplicer
|  
* commit 0b5829d919bc0958d17f05e84162558eaef2fd7c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 16 08:18:15 2008 +0000
| 
|     rename to asp
| 
| A	applications/asp/LICENSE
| A	applications/asp/Makefile
| A	applications/asp/NEWS
| A	applications/asp/README
| A	applications/asp/asplicer
| A	applications/asp/convert_mat.m
| A	applications/asp/dna.fa
| A	applications/asp/genomic.py
| A	applications/asp/model.py
| A	applications/asp/seqdict.py
| A	applications/asp/signal_detectors.py
| D	applications/asplicer/LICENSE
| D	applications/asplicer/Makefile
| D	applications/asplicer/NEWS
| D	applications/asplicer/README
| D	applications/asplicer/asplicer
| D	applications/asplicer/convert_mat.m
| D	applications/asplicer/dna.fa
| D	applications/asplicer/genomic.py
| D	applications/asplicer/model.py
| D	applications/asplicer/seqdict.py
| D	applications/asplicer/signal_detectors.py
|  
* commit 29c041c9c43135ed363ca92897a2e13c381f8fd8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 16 08:12:31 2008 +0000
| 
|     option for binary dumping of splice preds
| 
| M	applications/asplicer/asplicer
|  
* commit 7904ab525777196201f41947abb0535152089a47
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 16 04:51:54 2008 +0000
| 
|     splice predictor standalone tool
| 
| M	applications/asplicer/asplicer
| M	applications/asplicer/convert_mat.m
| M	applications/asplicer/genomic.py
| M	applications/asplicer/model.py
| M	applications/asplicer/signal_detectors.py
|  
* commit 10bf4a15dfe8b65052b67e61f714453eb1bf69c9
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Oct 15 19:12:14 2008 +0000
| 
|     compiles again, but I cannot test it
| 
| M	src/structure/DynProg.cpp
|  
* commit 493f9a4ab369ace2d9a98cc165920c86a6834b0e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 15 14:56:07 2008 +0000
| 
|     function best_path_call is broken and needs adjustments to new best_path_trans API
| 
| M	src/structure/DynProg.cpp
|  
* commit d53ec57986f676baf364978c281893c9db283c71
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 14 13:04:21 2008 +0000
| 
|     fix malformed R description
| 
| M	src/.r-install.sh
|  
* commit f93a71071ab7274314ae73d4aeda7e50b55e5e83
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 14 09:50:02 2008 +0000
| 
|     move shogun applications into the shogun source tree (which will allow automated tests regarding to detect API breakages)
| 
| A	applications/asplicer/LICENSE
| A	applications/asplicer/Makefile
| A	applications/asplicer/NEWS
| A	applications/asplicer/README
| A	applications/asplicer/asplicer
| A	applications/asplicer/convert_mat.m
| A	applications/asplicer/dna.fa
| A	applications/asplicer/genomic.py
| A	applications/asplicer/model.py
| A	applications/asplicer/seqdict.py
| A	applications/asplicer/signal_detectors.py
| A	applications/msplicer/LICENSE
| A	applications/msplicer/Makefile
| A	applications/msplicer/NEWS
| A	applications/msplicer/README
| A	applications/msplicer/content_sensors.py
| A	applications/msplicer/convert_mat.m
| A	applications/msplicer/dna.fa
| A	applications/msplicer/genomic.py
| A	applications/msplicer/model.py
| A	applications/msplicer/msplicer
| A	applications/msplicer/plif.py
| A	applications/msplicer/seqdict.py
| A	applications/msplicer/signal_detectors.py
|  
* commit d9c6aef264c313b35f3c681acbef38e2c0dc6434
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Oct 13 15:51:29 2008 +0000
| 
|     examples:
|     - Added a little utility library to graphical examples for python static.
| 
| M	examples/python/graphical/svm_classificaton.py
| M	examples/python/graphical/svr_regression.py
| A	examples/python/graphical/util.py
|  
* commit edece96c9fc60b65ebc65873643d964d764f29a3
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Oct 12 21:11:13 2008 +0000
| 
|     examples:
|     - Created a little library for graphical examples in python-modular.
| 
| M	examples/python-modular/graphical/all_evaluation.py
| M	examples/python-modular/graphical/krr.py
| M	examples/python-modular/graphical/krr_sinc.py
| M	examples/python-modular/graphical/lda.py
| M	examples/python-modular/graphical/multiple_smvs.py
| M	examples/python-modular/graphical/svm.py
| M	examples/python-modular/graphical/svmlin.py
| M	examples/python-modular/graphical/svr_sinc.py
| M	examples/python-modular/graphical/util.py
|  
* commit 4160c3ab07e619c7959675be9c2bba43b2754179
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 11 05:46:15 2008 +0000
| 
|     Preparing for new Release shogun_0.6.6
| 
| M	doc/Doxyfile
|  
* commit fd18e9f7aa0bb1b6db7c17514c07f53704930cb9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 11 05:45:53 2008 +0000
| 
|     fix documentation and dos2unix files in distance
| 
| M	doc/Doxyfile
| M	src/NEWS
| M	src/distance/BrayCurtisDistance.cpp
| M	src/distance/BrayCurtisDistance.h
| M	src/distance/CanberraMetric.cpp
| M	src/distance/CanberraMetric.h
| M	src/distance/ChebyshewMetric.cpp
| M	src/distance/ChebyshewMetric.h
| M	src/distance/ChiSquareDistance.cpp
| M	src/distance/ChiSquareDistance.h
| M	src/distance/CosineDistance.cpp
| M	src/distance/CosineDistance.h
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/distance/DistanceMachine.cpp
| M	src/distance/DistanceMachine.h
| M	src/distance/GeodesicMetric.cpp
| M	src/distance/GeodesicMetric.h
| M	src/distance/JensenMetric.cpp
| M	src/distance/JensenMetric.h
| M	src/distance/ManhattanMetric.cpp
| M	src/distance/ManhattanMetric.h
| M	src/distance/MinkowskiMetric.cpp
| M	src/distance/MinkowskiMetric.h
| M	src/distance/RealDistance.h
| M	src/distance/SimpleDistance.h
| M	src/distance/StringDistance.h
| M	src/distance/TanimotoDistance.cpp
| M	src/distance/TanimotoDistance.h
|  
* commit 9dcb2fdae7424aadf428b3014bc44dd6400e05f7
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 11 05:38:24 2008 +0000
| 
|     - Added 'svn stat' to make target prepare-release.
| 
| M	Makefile
|  
* commit ded8e48b09168df5b21c13bdb0c4636e3b67351b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 11 05:24:27 2008 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 58c8aee9fb431874ab004788e2206e6aa2038411
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 11 05:24:07 2008 +0000
| 
|     updated reference documentation
| 
| M	src/ChangeLog
|  
* commit b9b836d228b72c207493f9feefe411d23b112916
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 11 05:22:50 2008 +0000
| 
|     update news
| 
| M	src/NEWS
|  
* commit d4c9e34f841fe861b9729e34856fe91b5f1910ee
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 11 05:16:08 2008 +0000
| 
|     - Oopsie, forgot to add regression/Regression.h
| 
| A	src/regression/Regression.h
|  
* commit ba0fb97474b4cd864d7a6dfea62ce6357dc1d35d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 10 20:10:26 2008 +0000
| 
|     Preparing for new Release shogun_0.6.5
| 
| M	Makefile
|  
* commit a5aa1436f01b249d75c18f45f8186f57d6c36bfb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 10 14:34:02 2008 +0000
| 
|     update news
| 
| M	src/NEWS
| M	src/configure
|  
* commit b8f160deed6e69b631c0235f92da13bafb542a0a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Oct 10 14:32:48 2008 +0000
| 
|     Preparing for new Release shogun_0.6.5
| 
| M	doc/Doxyfile
|  
* commit 34ba0d7b027d69e3b04f58d845120f8412b6bfef
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Oct 10 14:29:31 2008 +0000
| 
|     updated reference documentation
| 
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
|  
* commit 48053aab365785180e7ce2965d1f0528156c6647
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Oct 8 22:19:55 2008 +0000
| 
|     common:
|     - Moved various enums from lib/common.h into more specific header files.
|     - Renamed E_ALPHABET to EAlphabet.
|     - Hence closing issue #65.
| 
| M	examples/python-modular/all_distribution.py
| M	src/classifier/Classifier.h
| M	src/distance/Distance.h
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.cpp
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.h
| M	src/features/Features.h
| M	src/features/StringFeatures.h
| M	src/kernel/Kernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/lib/File.h
| M	src/lib/common.h
| M	src/lib/io.h
| M	src/preproc/PreProc.h
| M	src/regression/KRR.h
| M	src/regression/Regression.i
| M	src/regression/svr/LibSVR.h
| M	src/regression/svr/SVR_light.h
|  
* commit f303d45b2797f072c885639ebc1546b0335c27b6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Oct 8 22:18:28 2008 +0000
| 
|     examples:
|     - Fixed wrong kernel usage (POLYMATCH) in matlab/octave and python static.
| 
| M	examples/matlab_and_octave/all_kernels.m
| M	examples/python/all_kernels.py
|  
* commit 562f0da94eac2b6ee13a810e0997c7a50c0f3db3
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Oct 8 22:04:10 2008 +0000
| 
|     testsuite:
|     - Test for LinearHMM (or rather its omittance) now succeeds in static R.
| 
| M	testsuite/r/distribution.R
|  
* commit bb29f9ae6ed520981511ff9a46e8c4b32a0094ac
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 4 22:31:17 2008 +0000
| 
|     testsuite:
|     - Data files have changed/been added.
| 
| M	testsuite/data/kernel/AUC_15_Gaussian_10.m
| M	testsuite/data/kernel/Chi2_10_12.m
| M	testsuite/data/kernel/Combined_3_10_60_LocalAlignmentString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| M	testsuite/data/kernel/CommUlongString_60_0_False_False_DNA_3.m
| M	testsuite/data/kernel/CommWordString_60_0_False_False_DNA_3.m
| M	testsuite/data/kernel/Const_230.m
| M	testsuite/data/kernel/Custom_7.m
| M	testsuite/data/kernel/Diag_230.m
| M	testsuite/data/kernel/Distance_CanberraMetric_17.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| M	testsuite/data/kernel/GaussianShift_1_2_13.m
| M	testsuite/data/kernel/Gaussian_13.m
| A	testsuite/data/kernel/HistogramWordString_60_0_DNA_3_False.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LinearWord_fnord.m
| M	testsuite/data/kernel/Linear_fnord.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| M	testsuite/data/kernel/MatchWordString_60_0_False_3_DNA_3.m
| M	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| M	testsuite/data/kernel/PolyMatchWordString_60_0_False_3_DNA_3_False.m
| M	testsuite/data/kernel/PolyMatchWordString_60_0_False_3_DNA_3_True.m
| A	testsuite/data/kernel/Poly_4_6_0_8_3_FK_False_True_01_1_CUBE_1_False.m
| A	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_False_True_01_1_CUBE_1_False.m
| M	testsuite/data/kernel/Poly_False_3_False.m
| M	testsuite/data/kernel/Poly_False_3_True.m
| M	testsuite/data/kernel/Poly_True_3_False.m
| M	testsuite/data/kernel/Poly_True_3_True.m
| A	testsuite/data/kernel/SalzbergWordString_60_0_DNA_3_False.m
| M	testsuite/data/kernel/Sigmoid_07_10_05.m
| M	testsuite/data/kernel/Sigmoid_13_10_11.m
| M	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| M	testsuite/data/kernel/SparseGaussian_13.m
| M	testsuite/data/kernel/SparseLinear_fnord.m
| M	testsuite/data/kernel/SparsePoly_3_10_False.m
| M	testsuite/data/kernel/SparsePoly_3_10_True.m
| M	testsuite/data/kernel/WeightedCommWordString_60_0_False_False_DNA_3.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
|  
* commit 20887cc8ad4201b16018bcc8f94de28633b651ad
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 4 22:30:32 2008 +0000
| 
|     testsuite:
|     - Reactivated testing for Salzberg/HistogramWordString/PIE and FK/TOP (where
|       applicable).
| 
| M	testsuite/generator/kernel.py
| M	testsuite/matlab_and_octave/util/fix_kernel_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/set_kernel.m
| M	testsuite/python-modular/kernel.py
| M	testsuite/python/kernel.py
| M	testsuite/python/util.py
| M	testsuite/r/util/fix_kernel_name_inconsistency.R
|  
* commit 4cdcb4496a558454af9b5758c11dc04a7524da9e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 4 22:29:06 2008 +0000
| 
|     interface:
|     - Reverted erroneous change to static interface to (POLY)MATCH(WORDSTRING).
| 
| M	src/interface/SGInterface.cpp
|  
* commit 5d7a3f2913de71cf59532d31c5bf836adbdaf03c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 4 21:38:32 2008 +0000
| 
|     examples:
|     - Added the 4 new distances to the examples.
| 
| M	examples/cmdline/all_distance.sg
| M	examples/matlab_and_octave/all_distance.m
| M	examples/octave-modular/all_distance.m
| M	examples/python-modular/all_distance.py
| M	examples/python/all_distance.py
| M	examples/r-modular/all_distance.R
| M	examples/r/all_distance.R
|  
* commit 84b1fa00cae0982b9521d33a7130658d729bffd9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 4 21:15:25 2008 +0000
| 
|     news:
|     - Updated news about the 4 new distances.
| 
| M	src/NEWS
|  
* commit f7d50e3878f50757cf5638cece4d42ec98f1abdb
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 4 21:13:02 2008 +0000
| 
|     testsuite:
|     - Integrated the 4 new distances into the testsuite.
| 
| A	testsuite/data/distance/BrayCurtisDistance_fnord.m
| A	testsuite/data/distance/ChiSquareDistance_fnord.m
| A	testsuite/data/distance/CosineDistance_fnord.m
| A	testsuite/data/distance/TanimotoDistance_fnord.m
| M	testsuite/generator/config.py
| M	testsuite/generator/distance.py
| M	testsuite/octave-modular/util/set_distance.m
|  
* commit d9eb9e56cc40d1a410258c647db205aaa79b0b0a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 4 21:12:09 2008 +0000
| 
|     distance:
|     - Fixed integration of the 4 new distances into the modular interfaces.
| 
| M	src/distance/ChiSquareDistance.i
| M	src/distance/Distance.i
|  
* commit b29ea598c570bd5af5dbd691af1cfa9170dcb72f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 4 21:05:23 2008 +0000
| 
|     testsuite:
|     - Fixed broken test for SparseEuclidian distance in static octave/matlab.
| 
| M	testsuite/matlab_and_octave/util/set_distance.m
|  
* commit 211862db7dbb22c4d1dcdaf2c005faf4739815cb
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 4 20:40:02 2008 +0000
| 
|     documentation:
|     - Fixed compiler warning.
| 
| M	src/kernel/OligoKernel.h
|  
* commit 5366267717357f64664ef13dfe0a4cacaedc47a7
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 2 19:40:06 2008 +0000
| 
|     interface:
|     - Forgot to include changes for Salzberg/HistogramWordString in
|       interface/guilib.
| 
| M	src/guilib/GUIKernel.cpp
| M	src/interface/SGInterface.cpp
|  
* commit 1c8487d9436856e29e46a650a1eb8b1e98d506e1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 2 19:36:11 2008 +0000
| 
|     examples:
|     - Adapted examples for modular R to recent changes.
| 
| M	examples/r-modular/all_kernels.R
| M	examples/r-modular/all_preproc.R
| D	examples/r-modular/first_shot.R
| D	examples/r-modular/libsvm.R
|  
* commit 3988fd493c8fc8d54069a77f93da19750a58ad39
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 2 19:21:06 2008 +0000
| 
|     examples:
|     - Adapted examples for modular python to recent changes.
| 
| M	examples/python-modular/all_kernels.py
| M	examples/python-modular/all_preproc.py
| M	examples/python-modular/check_commwordkernel_memleak.py
|  
* commit 332796fe6f62fe4ecc2f3a8c4050f7eb0162089c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 2 19:06:11 2008 +0000
| 
|     examples:
|     - Adapted examples for static python to recent changes.
| 
| M	examples/python/all_kernels.py
| M	examples/python/all_preproc.py
|  
* commit abdbc527d688abfb0d554fc0851114002d09185c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 2 18:38:06 2008 +0000
| 
|     examples:
|     - Adapted examples for modular octave to recent changes.
| 
| M	examples/octave-modular/all_kernels.m
| M	examples/octave-modular/all_preproc.m
|  
* commit 0e45ce1b8385c40a2eee23c8de2bc6d1bdb3d104
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 2 18:35:37 2008 +0000
| 
|     kernel:
|     - Fixed forgotten renaming of actual class of HistogramWordString and
|       SalzbergWordString.
| 
| M	src/kernel/HistogramWordStringKernel.cpp
| M	src/kernel/HistogramWordStringKernel.h
| M	src/kernel/SalzbergWordStringKernel.cpp
| M	src/kernel/SalzbergWordStringKernel.h
|  
* commit 5a429bccefb439ffba771c513ec7765847bd67e3
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 2 18:04:50 2008 +0000
| 
|     examples:
|     - Adapted examples for static matlab/octave to recent changes.
| 
| M	examples/matlab_and_octave/all_kernels.m
| M	examples/matlab_and_octave/all_preproc.m
|  
* commit 5c61643058f8bd3902a8bd4c0f30d50fead0d170
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 2 18:00:28 2008 +0000
| 
|     testsuite:
|     - Fixed wrong application of strcmp in static matlab/octave.
| 
| M	testsuite/matlab_and_octave/util/set_kernel.m
|  
* commit 789d77b1b500264264e77b8c4d0eb30f7039f272
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 2 16:14:41 2008 +0000
| 
|     testsuite:
|     - Adapted static R interface to recent changes.
|     - Added little script that makes executing a single test from the command-line
|       a bit easier.
| 
| A	testsuite/r/test_one.sh
| D	testsuite/r/util/fix_normalization_inconsistency.R
| M	testsuite/r/util/set_kernel.R
|  
* commit 40e275d71ca91eb219d507566f4efb2e67275cf7
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 2 04:02:46 2008 +0000
| 
|     testsuite:
|     - Some cleanup of old testscripts in static octave/matlab tester.
| 
| D	testsuite/matlab_and_octave/WeightedDegreeString.m
| D	testsuite/matlab_and_octave/test_chi2_kernel.m
| D	testsuite/matlab_and_octave/test_cws_kernel.m
| D	testsuite/matlab_and_octave/test_gaussian_kernel.m
| D	testsuite/matlab_and_octave/test_linear_kernel.m
| D	testsuite/matlab_and_octave/test_poly_kernel.m
| D	testsuite/matlab_and_octave/test_sigmoid_kernel.m
| D	testsuite/matlab_and_octave/test_svm.m
| D	testsuite/matlab_and_octave/test_wdchar_kernel.m
| D	testsuite/matlab_and_octave/test_wds_kernel.m
|  
* commit 96d1357e4b2788474ff575df32ce04f285f923ec
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 2 00:33:10 2008 +0000
| 
|     testsuite:
|     - Adjusted static octave/matlab tests to recent changes.
| 
| M	testsuite/matlab_and_octave/util/fix_kernel_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/set_kernel.m
|  
* commit 99699aca9bd38a808a27d369e97a5c6e28b1e0d1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Sep 29 22:44:28 2008 +0000
| 
|     testsuite:
|     - Implemented recent changes wrt normalizers in tester for octave modular.
| 
| M	testsuite/octave-modular/preproc.m
| M	testsuite/octave-modular/util/set_kernel.m
|  
* commit b4b3217dab1e73182a4514158d846fc8761224b2
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Sep 29 22:43:49 2008 +0000
| 
|     testsuite:
|     - Mixed up inhomogene and use_normalization in SparsePolyKernel.
| 
| M	testsuite/data/kernel/SparsePoly_3_10_False.m
| M	testsuite/generator/kernel.py
| M	testsuite/python-modular/util.py
|  
* commit bd0cd293bee7e31c6e2f3476207009f8f7c1e771
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Sep 29 21:41:43 2008 +0000
| 
|     documentation:
|     - Added a few docstrings to silence compilation.
| 
| M	src/features/DummyFeatures.h
| M	src/kernel/CombinedKernel.h
| M	src/kernel/DiceKernelNormalizer.h
| M	src/kernel/OligoKernel.h
| M	src/kernel/SqrtDiagKernelNormalizer.h
| M	src/kernel/TanimotoKernelNormalizer.h
|  
* commit 0548d3627d4b74162a71373e3240cafaa1b8d1d5
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Sep 29 20:41:15 2008 +0000
| 
|     testsuite:
|     - Data files have changed after last changes to generator.
| 
| M	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_1.m
| M	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_16.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_0017_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_023_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_15_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_30_1.m
| M	testsuite/data/classifier/SVMLight_0001_1en05_Linear_30_1.m
| M	testsuite/data/classifier/SVMLight_0001_1en05_Linear_30_16.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_0017_1.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_023_1.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_15_1.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_30_1.m
| M	testsuite/data/classifier/SubGradientSVM_05_023_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1en05_False.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LinearWord_fnord.m
| M	testsuite/data/kernel/Linear_fnord.m
| M	testsuite/data/kernel/Poly_False_3_False.m
| M	testsuite/data/kernel/Poly_False_3_True.m
| M	testsuite/data/kernel/SparseLinear_fnord.m
| M	testsuite/data/kernel/SparsePoly_3_10_False.m
| M	testsuite/data/kernel/SparsePoly_3_10_True.m
| M	testsuite/data/kernel/WeightedDegreeString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
|  
* commit a42b21fdc4e7077f10e1d4d2b12fb1c5f6fd10ee
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Sep 29 20:40:34 2008 +0000
| 
|     testsuite:
|     - Modified tester for python modular to properly handle normalizers.
| 
| M	testsuite/python-modular/classifier.py
| M	testsuite/python-modular/kernel.py
| M	testsuite/python-modular/util.py
|  
* commit cc721b19c17377e69963a0f09f666663eb751e27
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Sep 29 20:39:45 2008 +0000
| 
|     testsuite:
|     - Hopefully added normalizers correctly to the testsuite generator.
| 
| M	testsuite/generator/classifier.py
| M	testsuite/generator/config.py
| M	testsuite/generator/kernel.py
| M	testsuite/generator/preproc.py
|  
* commit 393dd027aad30f38151c49fa675c1155a28d088f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Sep 29 16:56:27 2008 +0000
| 
|     interface:
|     - Added missing call to set_normalizer when normalizer == false for
|       PolyMatchWordStringKernel in static interface.
| 
| M	src/guilib/GUIKernel.cpp
|  
* commit c34b8c36a7e4aa8ffe898b79233fc1405f0f4d83
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Sep 29 15:26:32 2008 +0000
| 
|     interface:
|     - Extended changes in static interface to Match(Word)String kernels
| 
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/interface/SGInterface.cpp
|  
* commit b607129e0cdb24ea6fb5ec670ebf7c6a784795a5
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Sep 27 17:26:09 2008 +0000
| 
|     testsuite:
|     - Adapted testsuite generator to removal of preproc SortWord.
| 
| A	testsuite/data/kernel/MatchWordString_60_0_False_3_DNA_3.m
| A	testsuite/data/kernel/PolyMatchWordString_60_0_False_3_DNA_3_False.m
| A	testsuite/data/kernel/PolyMatchWordString_60_0_False_3_DNA_3_True.m
| D	testsuite/data/kernel/PolyMatchWord_3_False.m
| D	testsuite/data/kernel/PolyMatchWord_3_True.m
| D	testsuite/data/kernel/WordMatch_3.m
| D	testsuite/data/preproc/SortWord_3_WordMatch.m
| D	testsuite/data/preproc/SortWord_LinearWord.m
| M	testsuite/generator/config.py
| M	testsuite/generator/kernel.py
| M	testsuite/generator/preproc.py
| M	testsuite/python-modular/preproc.py
|  
* commit d173db1d16fc0ee58813f70df02ac02f33afb16a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 19 22:46:53 2008 +0000
| 
|     remove SortWord preproc and rename other string kernels to have WordString suffix
| 
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIPreProc.cpp
| M	src/interface/SGInterface.cpp
| D	src/kernel/HistogramWordKernel.cpp
| D	src/kernel/HistogramWordKernel.h
| D	src/kernel/HistogramWordKernel.i
| A	src/kernel/HistogramWordStringKernel.cpp
| A	src/kernel/HistogramWordStringKernel.h
| A	src/kernel/HistogramWordStringKernel.i
| M	src/kernel/Kernel.i
| A	src/kernel/MatchWordStringKernel.cpp
| A	src/kernel/MatchWordStringKernel.h
| A	src/kernel/MatchWordStringKernel.i
| D	src/kernel/PolyMatchWordKernel.cpp
| D	src/kernel/PolyMatchWordKernel.h
| D	src/kernel/PolyMatchWordKernel.i
| A	src/kernel/PolyMatchWordStringKernel.cpp
| A	src/kernel/PolyMatchWordStringKernel.h
| A	src/kernel/PolyMatchWordStringKernel.i
| D	src/kernel/SalzbergWordKernel.cpp
| D	src/kernel/SalzbergWordKernel.h
| D	src/kernel/SalzbergWordKernel.i
| A	src/kernel/SalzbergWordStringKernel.cpp
| A	src/kernel/SalzbergWordStringKernel.h
| A	src/kernel/SalzbergWordStringKernel.i
| D	src/kernel/WordMatchKernel.cpp
| D	src/kernel/WordMatchKernel.h
| D	src/kernel/WordMatchKernel.i
| M	src/lib/common.h
| M	src/preproc/PreProc.i
| D	src/preproc/SortWord.cpp
| D	src/preproc/SortWord.h
| D	src/preproc/SortWord.i
|  
* commit 599d611cff6a225f59435639ae9de49e40bd226a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Sep 19 20:09:16 2008 +0000
| 
|     features:
|     - Implemented get_fm() for WordFeatures.
| 
| M	src/features/WordFeatures.h
| M	src/features/WordFeatures.i
|  
* commit 6b4d8ee53e14d738fa3b59d803be488981fecd6a
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Fri Sep 19 10:58:23 2008 +0000
| 
|     added distances: Bray-Curtis, Chi-Square, Cosine, Tanimoto
| 
| A	src/distance/BrayCurtisDistance.cpp
| A	src/distance/BrayCurtisDistance.h
| A	src/distance/BrayCurtisDistance.i
| M	src/distance/CanberraMetric.h
| M	src/distance/ChebyshewMetric.h
| A	src/distance/ChiSquareDistance.cpp
| A	src/distance/ChiSquareDistance.h
| A	src/distance/ChiSquareDistance.i
| A	src/distance/CosineDistance.cpp
| A	src/distance/CosineDistance.h
| A	src/distance/CosineDistance.i
| M	src/distance/EuclidianDistance.h
| M	src/distance/GeodesicMetric.h
| M	src/distance/JensenMetric.h
| M	src/distance/ManhattanMetric.h
| M	src/distance/MinkowskiMetric.h
| A	src/distance/TanimotoDistance.cpp
| A	src/distance/TanimotoDistance.h
| A	src/distance/TanimotoDistance.i
| M	src/guilib/GUIDistance.cpp
| M	src/interface/SGInterface.cpp
| M	src/lib/common.h
|  
* commit 8dddef8d4547d3412662a0705e3411d8ca1bbe0c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 16 14:14:02 2008 +0000
| 
|     add further kernel normalizers, after reading PyML tutorial
| 
| A	src/kernel/DiceKernelNormalizer.h
| A	src/kernel/DiceKernelNormalizer.i
| A	src/kernel/TanimotoKernelNormalizer.h
| A	src/kernel/TanimotoKernelNormalizer.i
|  
* commit cc374238ec0854ebdc7e57613a20a95038ebd1cb
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Sep 10 01:36:41 2008 +0000
| 
|     testsuite:
|     - Adjusted testing in python to reflect previous changes.
| 
| M	testsuite/python/util.py
|  
* commit 71052511d921b493545750a10ccd168964003f9b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Sep 10 01:36:08 2008 +0000
| 
|     testsuite:
|     - Adjusted testing in python-modular to reflect previous changes.
| 
| M	testsuite/python-modular/kernel.py
| M	testsuite/python-modular/preproc.py
|  
* commit aa5e526677272c24f23590a6964e79111e796249
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Sep 10 01:34:48 2008 +0000
| 
|     testsuite:
|     - Regenerated data files to reflect previous changes.
| 
| A	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_1.m
| D	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_15_1.m
| D	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_15_16.m
| A	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_16.m
| A	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_0017_1.m
| D	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_0017_15_1.m
| A	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_023_1.m
| D	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_023_15_1.m
| A	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_15_1.m
| D	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_15_15_1.m
| A	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_30_1.m
| D	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_30_15_1.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommUlongString_False_2_30_16_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommUlongString_False_30_16_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommUlongString_False_30_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommWordString_False_2_30_16_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommWordString_False_30_16_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommWordString_False_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_16_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_16_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_023_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_15_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_023_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_15_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_023_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_15_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_0001_1en05_Linear_30_1.m
| D	testsuite/data/classifier/SVMLight_0001_1en05_Linear_30_15_1.m
| D	testsuite/data/classifier/SVMLight_0001_1en05_Linear_30_15_16.m
| A	testsuite/data/classifier/SVMLight_0001_1en05_Linear_30_16.m
| A	testsuite/data/classifier/SVMLight_001_1en05_Linear_0017_1.m
| D	testsuite/data/classifier/SVMLight_001_1en05_Linear_0017_15_1.m
| A	testsuite/data/classifier/SVMLight_001_1en05_Linear_023_1.m
| D	testsuite/data/classifier/SVMLight_001_1en05_Linear_023_15_1.m
| A	testsuite/data/classifier/SVMLight_001_1en05_Linear_15_1.m
| D	testsuite/data/classifier/SVMLight_001_1en05_Linear_15_15_1.m
| A	testsuite/data/classifier/SVMLight_001_1en05_Linear_30_1.m
| D	testsuite/data/classifier/SVMLight_001_1en05_Linear_30_15_1.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommUlongString_False_2_30_16_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommUlongString_False_30_16_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommUlongString_False_30_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommWordString_False_2_30_16_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommWordString_False_30_16_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommWordString_False_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_16_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_16_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_023_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_15_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_023_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_15_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_023_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_15_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1en05_False.m
| M	testsuite/data/kernel/AUC_15_Gaussian_10.m
| M	testsuite/data/kernel/Chi2_10_12.m
| D	testsuite/data/kernel/Combined_3_10_60_LinearString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| A	testsuite/data/kernel/Combined_3_10_60_LocalAlignmentString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| D	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| A	testsuite/data/kernel/CommUlongString_60_0_False_False_DNA_3.m
| D	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| A	testsuite/data/kernel/CommWordString_60_0_False_False_DNA_3.m
| M	testsuite/data/kernel/Const_230.m
| M	testsuite/data/kernel/Custom_7.m
| M	testsuite/data/kernel/Diag_230.m
| M	testsuite/data/kernel/Distance_CanberraMetric_17.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| M	testsuite/data/kernel/GaussianShift_1_2_13.m
| M	testsuite/data/kernel/Gaussian_13.m
| D	testsuite/data/kernel/HistogramWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LinearWord_fnord.m
| D	testsuite/data/kernel/Linear_10.m
| A	testsuite/data/kernel/Linear_fnord.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| M	testsuite/data/kernel/PolyMatchWord_3_False.m
| M	testsuite/data/kernel/PolyMatchWord_3_True.m
| D	testsuite/data/kernel/Poly_4_6_0_8_3_FK_False_True_01_1_CUBE_1_False.m
| D	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_False_True_01_1_CUBE_1_False.m
| M	testsuite/data/kernel/Poly_False_3_False.m
| M	testsuite/data/kernel/Poly_False_3_True.m
| M	testsuite/data/kernel/Poly_True_3_False.m
| M	testsuite/data/kernel/Poly_True_3_True.m
| D	testsuite/data/kernel/SalzbergWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/Sigmoid_07_10_05.m
| M	testsuite/data/kernel/Sigmoid_13_10_11.m
| M	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| M	testsuite/data/kernel/SparseGaussian_13.m
| D	testsuite/data/kernel/SparseLinear_10.m
| A	testsuite/data/kernel/SparseLinear_fnord.m
| A	testsuite/data/kernel/SparsePoly_3_10_False.m
| A	testsuite/data/kernel/SparsePoly_3_10_True.m
| D	testsuite/data/kernel/SparsePoly_3_10_True_True.m
| D	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| A	testsuite/data/kernel/WeightedCommWordString_60_0_False_False_DNA_3.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| M	testsuite/data/kernel/WordMatch_3.m
| D	testsuite/data/preproc/SortUlongString_2_60_0_False_DNA_CommUlongString_3_False.m
| A	testsuite/data/preproc/SortUlongString_60_0_False_DNA_CommUlongString_3_False.m
| D	testsuite/data/preproc/SortWordString_2_60_0_False_DNA_CommWordString_3_False.m
| A	testsuite/data/preproc/SortWordString_60_0_False_DNA_CommWordString_3_False.m
| A	testsuite/data/preproc/SortWord_3_WordMatch.m
| M	testsuite/data/preproc/SortWord_LinearWord.m
|  
* commit 68341bdf541fac8856e631f0c5fabe2e84b6c6f9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Sep 10 01:33:07 2008 +0000
| 
|     testsuite:
|     - Adjusted generator to respect changes in Linear kernels, normalization and
|       CustomKernel.
| 
| M	testsuite/generator/classifier.py
| M	testsuite/generator/config.py
| M	testsuite/generator/fileop.py
| M	testsuite/generator/kernel.py
| M	testsuite/generator/preproc.py
|  
* commit 89f9d8182ce06bccc273604229e96524c30a7500
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 5 17:15:25 2008 +0000
| 
|     add missing file
| 
| A	src/kernel/OligoKernel.i
|  
* commit 46f3ad6b1d16aaea18f7459ad978276840402480
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 1 18:39:53 2008 +0000
| 
|     implement precompute_subkernels
| 
| M	src/NEWS
| M	src/guilib/GUICommands.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/OligoKernel.cpp
| M	src/kernel/OligoKernel.h
|  
* commit 4e41ab103acf35fe41e967e5a4439d4106ed2049
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 28 17:44:42 2008 +0000
| 
|     Documentation updates for distributions. Implement multiclass svm model saving and loading.
| 
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/classifier/svm/MultiClassSVM.h
| M	src/classifier/svm/SVM.h
| M	src/distributions/Distribution.h
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/hmm/GHMM.h
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/LinearHMM.h
|  
* commit f1812b7120d3951bb163896cf4d58d1facd4cf6e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 26 14:26:06 2008 +0000
| 
|     add missing file
| 
| A	src/kernel/FirstElementKernelNormalizer.h
|  
* commit 92786d4386b12deb4716a2cb240b47789f13e11d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 26 14:04:45 2008 +0000
| 
|     Possibly correctly integrate oligo kernel, however I had to fix an array out of bounds read (thanks valgrind) and as the kernel was very diagonally dominant I added SqrtDiag normalization; wrote examples for all interfaces from cmdline to r-modular :)
| 
| M	examples/cmdline/all_kernels.sg
| M	examples/matlab_and_octave/all_kernels.m
| M	examples/octave-modular/all_kernels.m
| M	examples/python-modular/all_kernels.py
| M	examples/python/all_kernels.py
| M	examples/r-modular/all_kernels.R
| M	examples/r/all_kernels.R
| M	src/NEWS
| M	src/clustering/Hierarchical.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/interface/SGInterface.cpp
| M	src/kernel/Kernel.i
| M	src/kernel/OligoKernel.cpp
| M	src/kernel/OligoKernel.h
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/lib/Mathematics.h
| M	src/lib/common.h
|  
* commit a168fadb9caf806ca56713a30e1026e38eabd64f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 24 18:03:10 2008 +0000
| 
|     - implement proper kernel normalisation
|     - remove requirement to set features to custom kernel
|     - fix buggy normalization in wds kernel
| 
| M	doc/Doxyfile
| M	examples/cmdline/all_classifier.sg
| M	src/NEWS
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| A	src/features/DummyFeatures.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUICommands.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/kernel/AUCKernel.cpp
| A	src/kernel/AvgDiagKernelNormalizer.h
| A	src/kernel/AvgDiagKernelNormalizer.i
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.cpp
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/DistanceKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianShortRealKernel.cpp
| M	src/kernel/HistogramWordKernel.cpp
| A	src/kernel/IdentityKernelNormalizer.h
| A	src/kernel/IdentityKernelNormalizer.i
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/Kernel.i
| A	src/kernel/KernelNormalizer.h
| A	src/kernel/KernelNormalizer.i
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearStringKernel.cpp
| M	src/kernel/LinearStringKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalAlignmentStringKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.cpp
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchStringKernel.h
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/PolyMatchWordKernel.h
| M	src/kernel/PyramidChi2.cpp
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
| A	src/kernel/SqrtDiagKernelNormalizer.h
| A	src/kernel/SqrtDiagKernelNormalizer.i
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/kernel/WordMatchKernel.cpp
| M	src/kernel/WordMatchKernel.h
| M	src/lib/Mathematics.h
| M	src/lib/common.h
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
|  
* commit 13dc3647bd4d1e070fab0713857b3c9c4b49ad37
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Aug 18 21:36:51 2008 +0000
| 
|     potentially fix mkl detection
| 
| M	src/configure
|  
* commit 1da0591634e6edc059eb32b233c47e02be6cd1f0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 17 07:02:45 2008 +0000
| 
|     fix transpose
| 
| M	src/lib/File.cpp
| M	src/lib/Mathematics.h
|  
* commit 780cf2c834ce97da52dfebd2dc4872b7118a0d88
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Aug 17 00:37:08 2008 +0000
| 
|     testsuite:
|     - Changed order of output of radi/centers in R, octave, matlab to match order
|       in python.
| 
| M	testsuite/matlab_and_octave/clustering.m
| M	testsuite/matlab_and_octave/util/check_accuracy.m
| M	testsuite/octave-modular/clustering.m
| M	testsuite/octave-modular/util/check_accuracy.m
| M	testsuite/r/clustering.R
| M	testsuite/r/util/check_accuracy.R
|  
* commit 83a4cff2ced80d948bf333b2398e19e6c3a528ed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Aug 16 07:41:26 2008 +0000
| 
|     adjust makefile
| 
| M	src/Makefile
|  
* commit 51edc7816dfd578e3deb32e1a241c54bdc5756c4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Aug 16 07:41:07 2008 +0000
| 
|     - compile fix when lapack/atlas is not available
|     - don't check .config for interface when running tests but use argument
| 
| M	src/guilib/GUIClassifier.cpp
| M	testsuite/matlab_and_octave/test_all.sh
|  
* commit 4ed135ec3d265390e32f511e715c2df565cfca40
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 15 16:52:19 2008 +0000
| 
|     new svn version seem broken when using svn cp with WC WC
| 
| M	Makefile
|  
* commit bb9afe025bc9464df199bceb7078bac7ab621a72
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 15 16:48:03 2008 +0000
| 
|     Preparing for new Release shogun_0.6.4
| 
| M	Makefile
|  
* commit b1c6f2ccf474a6762eb2503e075be9fc53be93a8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 15 16:41:17 2008 +0000
| 
|     Preparing for new Release shogun_0.6.4
| 
| M	Makefile
|  
* commit 5695e0a343f539ea9c4beff49ddb72a8d688ec4c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 15 16:40:27 2008 +0000
| 
|     Preparing for new Release shogun_0.6.4
| 
| M	Makefile
|  
* commit 192e7c5a3338a9f642f76a3671fe09af244545b8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 15 16:39:20 2008 +0000
| 
|     Preparing for new Release shogun_0.6.4
| 
| M	Makefile
|  
* commit 9f41b32e621a27bdf604908913cda61ecbd7a815
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 15 16:24:05 2008 +0000
| 
|     Preparing for new Release shogun_0.6.4
| 
| M	doc/Doxyfile
|  
* commit d8926c06fa54a23610f40bf263c4f1c5b2bbefea
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 15 16:22:14 2008 +0000
| 
|     updated reference documentation
| 
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
|  
* commit 1824048f1826c45618f5b9b883e7b839e65ac7d8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 15 15:31:12 2008 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit b921b50a084f206c4bea4fcc0168156aedc57f18
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 15 15:15:25 2008 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 986aa2e373f5029b7abcdfb2c70913c7e38fa705
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 15 15:13:52 2008 +0000
| 
|     remove obsolete comments
| 
| M	testsuite/matlab_and_octave/distribution.m
| M	testsuite/r/distribution.R
|  
* commit 3800fe3ea54e6c4a18e2e7d142f865e78ebfdba9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 15 15:05:23 2008 +0000
| 
|     Document everything in features/ and clustering/, fixes for regression/kernel.
|     
|     To be really useful we still need documentation for everything in
|     
|     • classifier/*
|     • distances/*
|     • distributions/*
|     
|     and of course we need some first steps tutorial for the modular interfaces.
| 
| M	src/clustering/Hierarchical.h
| M	src/clustering/KMeans.h
| M	src/distributions/Distribution.h
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.h
| M	src/features/CombinedFeatures.h
| M	src/features/FKFeatures.h
| M	src/features/Features.h
| M	src/features/IntFeatures.h
| M	src/features/Labels.h
| M	src/features/RealFeatures.h
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.h
| M	src/features/ShortRealFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.h
| M	src/features/WordFeatures.h
| M	src/kernel/CombinedKernel.h
| M	src/kernel/PolyMatchWordKernel.h
| M	src/kernel/SigmoidKernel.h
| M	src/regression/svr/LibSVR.h
| M	src/regression/svr/SVR_light.h
|  
* commit a98798e8c4c47b2ef386dd4bae6f6b96ed8507f1
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Aug 15 08:09:44 2008 +0000
| 
|     minor correction
| 
| M	src/kernel/GaussianShiftKernel.h
|  
* commit 04787ac4c1a52cdac08a3a5fccc3d901ffa04f79
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Aug 15 08:04:57 2008 +0000
| 
|     added some documentation of the GaussianShift kernel
| 
| M	src/kernel/GaussianShiftKernel.h
|  
* commit df07de8e47143b6d25f5226053b735c789277e78
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 14 21:16:21 2008 +0000
| 
|     document kernels
| 
| M	src/NEWS
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/CustomKernel.h
| M	src/kernel/GaussianKernel.h
| M	src/kernel/GaussianShiftKernel.h
| M	src/kernel/GaussianShortRealKernel.h
| M	src/kernel/HistogramWordKernel.h
| M	src/kernel/Kernel.h
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearStringKernel.h
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalAlignmentStringKernel.h
| M	src/kernel/LocalityImprovedStringKernel.h
| M	src/kernel/OligoKernel.h
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchStringKernel.h
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/PolyMatchWordKernel.h
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.h
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/kernel/WordMatchKernel.h
|  
* commit 0f83670eb1796c6050c56dd4366be451caae98e1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 13 16:22:27 2008 +0000
| 
|     kill remaining randomness, testsuite runs through now for octave/python/python-modular
| 
| M	src/kernel/CustomKernel.cpp
| A	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1en05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_023_15_1_001_1en05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_15_15_1_001_1en05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_15_16_0001_1en05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_15_1_0001_1en05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_15_1_001_1en05_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_15_1.m
| A	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_15_16.m
| A	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_0017_15_1.m
| A	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_023_15_1.m
| A	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_15_15_1.m
| A	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_30_15_1.m
| A	testsuite/data/classifier/GPBTSVM_15_0001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/GPBTSVM_15_0001_1en05_Gaussian_30_16.m
| A	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_0017_1.m
| A	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_023_1.m
| A	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_15_1.m
| A	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommUlongString_False_2_30_16_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommWordString_False_2_30_16_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA_True.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_16_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_16_3_DNA_True.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_16_3_DNA_True_True.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_023_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_15_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| A	testsuite/data/classifier/KNN_EuclidianDistance_1_3.m
| A	testsuite/data/classifier/LDA_1_01.m
| A	testsuite/data/classifier/LibLinear_0017_1_1en05_True.m
| A	testsuite/data/classifier/LibLinear_023_1_1en05_True.m
| A	testsuite/data/classifier/LibLinear_15_1_1en05_True.m
| A	testsuite/data/classifier/LibLinear_30_16_1en05_True.m
| A	testsuite/data/classifier/LibLinear_30_1_1en05_True.m
| A	testsuite/data/classifier/LibSVMMultiClass_0017_15_1_001_1en05_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_023_15_1_001_1en05_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_15_15_1_001_1en05_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_30_15_16_0001_1en05_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_30_15_1_0001_1en05_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_1en05_Gaussian.m
| A	testsuite/data/classifier/LibSVMOneClass_15_0001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/LibSVMOneClass_15_0001_1en05_Gaussian_30_16.m
| A	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_0017_1.m
| A	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_023_1.m
| A	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_15_1.m
| A	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/LibSVM_15_0001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/LibSVM_15_0001_1en05_Gaussian_30_16.m
| A	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_0017_1.m
| A	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_023_1.m
| A	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_15_1.m
| A	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/MPDSVM_15_0001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/MPDSVM_15_0001_1en05_Gaussian_30_16.m
| A	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_0017_1.m
| A	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_023_1.m
| A	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_15_1.m
| A	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/Perceptron_1_01_1000.m
| A	testsuite/data/classifier/SVMLight_0001_1en05_Linear_30_15_1.m
| A	testsuite/data/classifier/SVMLight_0001_1en05_Linear_30_15_16.m
| A	testsuite/data/classifier/SVMLight_001_1en05_Linear_0017_15_1.m
| A	testsuite/data/classifier/SVMLight_001_1en05_Linear_023_15_1.m
| A	testsuite/data/classifier/SVMLight_001_1en05_Linear_15_15_1.m
| A	testsuite/data/classifier/SVMLight_001_1en05_Linear_30_15_1.m
| A	testsuite/data/classifier/SVMLight_15_0001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/SVMLight_15_0001_1en05_Gaussian_30_16.m
| A	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_0017_1.m
| A	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_023_1.m
| A	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_15_1.m
| A	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommUlongString_False_2_30_16_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommWordString_False_2_30_16_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_16_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_16_3_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_16_3_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_023_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_15_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| A	testsuite/data/classifier/SVMLin_0017_1_1en05_True.m
| A	testsuite/data/classifier/SVMLin_023_1_1en05_True.m
| A	testsuite/data/classifier/SVMLin_15_1_1en05_True.m
| A	testsuite/data/classifier/SVMLin_30_16_1en05_True.m
| A	testsuite/data/classifier/SVMLin_30_1_1en05_True.m
| A	testsuite/data/classifier/SVMOcas_0017_1_1en05_False.m
| A	testsuite/data/classifier/SVMOcas_023_1_1en05_False.m
| A	testsuite/data/classifier/SVMOcas_15_1_1en05_False.m
| A	testsuite/data/classifier/SVMOcas_30_16_1en05_False.m
| A	testsuite/data/classifier/SVMOcas_30_1_1en05_False.m
| A	testsuite/data/classifier/SVMSGD_0017_1_1en05_True.m
| A	testsuite/data/classifier/SVMSGD_023_1_1en05_True.m
| A	testsuite/data/classifier/SVMSGD_15_1_1en05_True.m
| A	testsuite/data/classifier/SVMSGD_30_16_1en05_True.m
| A	testsuite/data/classifier/SVMSGD_30_1_1en05_True.m
| A	testsuite/data/classifier/SubGradientSVM_05_0017_1_1en05_False.m
| A	testsuite/data/classifier/SubGradientSVM_05_023_1_1en05_False.m
| A	testsuite/data/classifier/SubGradientSVM_05_15_1_1en05_False.m
| A	testsuite/data/classifier/SubGradientSVM_05_30_16_1en05_False.m
| A	testsuite/data/classifier/SubGradientSVM_05_30_1_1en05_False.m
| A	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| A	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| A	testsuite/data/distance/CanberraMetric_fnord.m
| A	testsuite/data/distance/CanberraWordDistance_60_0_False_DNA_3.m
| A	testsuite/data/distance/ChebyshewMetric_fnord.m
| A	testsuite/data/distance/EuclidianDistance_fnord.m
| A	testsuite/data/distance/GeodesicMetric_fnord.m
| A	testsuite/data/distance/HammingWordDistance_60_0_False_False_DNA_3.m
| A	testsuite/data/distance/HammingWordDistance_60_0_False_True_DNA_3.m
| A	testsuite/data/distance/JensenMetric_fnord.m
| A	testsuite/data/distance/ManhattanMetric_fnord.m
| A	testsuite/data/distance/ManhattanWordDistance_60_0_False_DNA_3.m
| A	testsuite/data/distance/MinkowskiMetric_13.m
| A	testsuite/data/distance/SparseEuclidianDistance_fnord.m
| A	testsuite/data/distribution/HMM_4_60_6_3_0_1en10_False_CUBE_1.m
| A	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| A	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| A	testsuite/data/kernel/AUC_15_Gaussian_10.m
| A	testsuite/data/kernel/Chi2_10_12.m
| A	testsuite/data/kernel/Combined_3_10_60_LinearString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| A	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| A	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| A	testsuite/data/kernel/Const_230.m
| A	testsuite/data/kernel/Custom_7.m
| A	testsuite/data/kernel/Diag_230.m
| A	testsuite/data/kernel/Distance_CanberraMetric_17.m
| A	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| A	testsuite/data/kernel/GaussianShift_1_2_13.m
| A	testsuite/data/kernel/Gaussian_13.m
| A	testsuite/data/kernel/HistogramWord_60_0_DNA_3_False.m
| A	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| A	testsuite/data/kernel/LinearString_60_DNA.m
| A	testsuite/data/kernel/LinearWord_fnord.m
| A	testsuite/data/kernel/Linear_10.m
| A	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| A	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| A	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| A	testsuite/data/kernel/PolyMatchWord_3_False.m
| A	testsuite/data/kernel/PolyMatchWord_3_True.m
| A	testsuite/data/kernel/Poly_4_6_0_8_3_FK_False_True_01_1_CUBE_1_False.m
| A	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_False_True_01_1_CUBE_1_False.m
| A	testsuite/data/kernel/Poly_False_3_False.m
| A	testsuite/data/kernel/Poly_False_3_True.m
| A	testsuite/data/kernel/Poly_True_3_False.m
| A	testsuite/data/kernel/Poly_True_3_True.m
| A	testsuite/data/kernel/SalzbergWord_60_0_DNA_3_False.m
| A	testsuite/data/kernel/Sigmoid_07_10_05.m
| A	testsuite/data/kernel/Sigmoid_13_10_11.m
| A	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| A	testsuite/data/kernel/SparseGaussian_13.m
| A	testsuite/data/kernel/SparseLinear_10.m
| A	testsuite/data/kernel/SparsePoly_3_10_True_True.m
| A	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| A	testsuite/data/kernel/WeightedDegreePositionString_60_1_DNA.m
| A	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| A	testsuite/data/kernel/WeightedDegreeString_60_1_DNA.m
| A	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| A	testsuite/data/kernel/WordMatch_3.m
| A	testsuite/data/preproc/LogPlusOne_Gaussian_12.m
| A	testsuite/data/preproc/NormOne_Gaussian_12.m
| A	testsuite/data/preproc/PruneVarSubMean_False_Gaussian_12.m
| A	testsuite/data/preproc/PruneVarSubMean_True_Gaussian_12.m
| A	testsuite/data/preproc/SortUlongString_2_60_0_False_DNA_CommUlongString_3_False.m
| A	testsuite/data/preproc/SortWordString_2_60_0_False_DNA_CommWordString_3_False.m
| A	testsuite/data/preproc/SortWord_LinearWord.m
| A	testsuite/data/regression/KRR_Gaussian_16_1en05_15.m
| A	testsuite/data/regression/KRR_Gaussian_1_1en05_15.m
| A	testsuite/data/regression/KRR_Gaussian_1_1en06_15.m
| A	testsuite/data/regression/LibSVR_0017_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_023_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_15_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_30_16_15_00001_Gaussian_0001.m
| A	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_0001.m
| A	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_30_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_0017_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_023_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_15_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_0001.m
| A	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_30_1_15_1en05_Gaussian_001.m
| M	testsuite/generator/kernel.py
|  
* commit de0ec9480af9ef62b2b3b372b6c80545229b6fe7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 13 16:18:48 2008 +0000
| 
|     default PYTHON to python
| 
| M	testsuite/python/test_all.sh
|  
* commit af72ca7ed8022c750a38cf7e0ddfa455f6cd9e64
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 13 15:51:47 2008 +0000
| 
|     regenerate test data
| 
| D	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_023_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_15_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_15_16_0001_00001_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_15_1_0001_00001_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_15_1_001_00001_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_1.m
| D	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_16.m
| D	testsuite/data/classifier/GPBTSVM_001_00001_Linear_30_15_1.m
| D	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_0017_15_1.m
| D	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_023_15_1.m
| D	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_15_15_1.m
| D	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_30_15_1.m
| D	testsuite/data/classifier/GPBTSVM_15_0001_00001_Gaussian_30_1.m
| D	testsuite/data/classifier/GPBTSVM_15_0001_00001_Gaussian_30_16.m
| D	testsuite/data/classifier/GPBTSVM_15_001_00001_Gaussian_30_1.m
| D	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_0017_1.m
| D	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_023_1.m
| D	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_15_1.m
| D	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_30_1.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_023_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_15_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| D	testsuite/data/classifier/KNN_EuclidianDistance_1_3.m
| D	testsuite/data/classifier/LDA_1_01.m
| D	testsuite/data/classifier/LibLinear_0017_1_1en05_True.m
| D	testsuite/data/classifier/LibLinear_023_1_1en05_True.m
| D	testsuite/data/classifier/LibLinear_15_1_1en05_True.m
| D	testsuite/data/classifier/LibLinear_30_16_00001_True.m
| D	testsuite/data/classifier/LibLinear_30_1_00001_True.m
| D	testsuite/data/classifier/LibLinear_30_1_1en05_True.m
| D	testsuite/data/classifier/LibSVMMultiClass_0017_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_023_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_15_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_15_16_0001_00001_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_15_1_0001_00001_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_00001_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_15_0001_00001_Gaussian_30_1.m
| D	testsuite/data/classifier/LibSVMOneClass_15_0001_00001_Gaussian_30_16.m
| D	testsuite/data/classifier/LibSVMOneClass_15_001_00001_Gaussian_30_1.m
| D	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_0017_1.m
| D	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_023_1.m
| D	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_15_1.m
| D	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_30_1.m
| D	testsuite/data/classifier/LibSVM_15_0001_00001_Gaussian_30_1.m
| D	testsuite/data/classifier/LibSVM_15_0001_00001_Gaussian_30_16.m
| D	testsuite/data/classifier/LibSVM_15_001_00001_Gaussian_30_1.m
| D	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_0017_1.m
| D	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_023_1.m
| D	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_15_1.m
| D	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_30_1.m
| D	testsuite/data/classifier/MPDSVM_15_0001_00001_Gaussian_30_1.m
| D	testsuite/data/classifier/MPDSVM_15_0001_00001_Gaussian_30_16.m
| D	testsuite/data/classifier/MPDSVM_15_001_00001_Gaussian_30_1.m
| D	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_0017_1.m
| D	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_023_1.m
| D	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_15_1.m
| D	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_30_1.m
| D	testsuite/data/classifier/Perceptron_1_01_1000.m
| D	testsuite/data/classifier/SVMLight_0001_00001_Linear_30_15_1.m
| D	testsuite/data/classifier/SVMLight_0001_00001_Linear_30_15_16.m
| D	testsuite/data/classifier/SVMLight_001_00001_Linear_30_15_1.m
| D	testsuite/data/classifier/SVMLight_001_1en05_Linear_0017_15_1.m
| D	testsuite/data/classifier/SVMLight_001_1en05_Linear_023_15_1.m
| D	testsuite/data/classifier/SVMLight_001_1en05_Linear_15_15_1.m
| D	testsuite/data/classifier/SVMLight_001_1en05_Linear_30_15_1.m
| D	testsuite/data/classifier/SVMLight_15_0001_00001_Gaussian_30_1.m
| D	testsuite/data/classifier/SVMLight_15_0001_00001_Gaussian_30_16.m
| D	testsuite/data/classifier/SVMLight_15_001_00001_Gaussian_30_1.m
| D	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_0017_1.m
| D	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_023_1.m
| D	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_15_1.m
| D	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_30_1.m
| D	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| D	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| D	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_023_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_15_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| D	testsuite/data/classifier/SVMLin_0017_1_1en05_True.m
| D	testsuite/data/classifier/SVMLin_023_1_1en05_True.m
| D	testsuite/data/classifier/SVMLin_15_1_1en05_True.m
| D	testsuite/data/classifier/SVMLin_30_16_00001_True.m
| D	testsuite/data/classifier/SVMLin_30_1_00001_True.m
| D	testsuite/data/classifier/SVMLin_30_1_1en05_True.m
| D	testsuite/data/classifier/SVMOcas_0017_1_1en05_False.m
| D	testsuite/data/classifier/SVMOcas_023_1_1en05_False.m
| D	testsuite/data/classifier/SVMOcas_15_1_1en05_False.m
| D	testsuite/data/classifier/SVMOcas_30_16_00001_False.m
| D	testsuite/data/classifier/SVMOcas_30_1_00001_False.m
| D	testsuite/data/classifier/SVMOcas_30_1_1en05_False.m
| D	testsuite/data/classifier/SVMSGD_0017_1_1en05_True.m
| D	testsuite/data/classifier/SVMSGD_023_1_1en05_True.m
| D	testsuite/data/classifier/SVMSGD_15_1_1en05_True.m
| D	testsuite/data/classifier/SVMSGD_30_16_00001_True.m
| D	testsuite/data/classifier/SVMSGD_30_1_00001_True.m
| D	testsuite/data/classifier/SVMSGD_30_1_1en05_True.m
| D	testsuite/data/classifier/SubGradientSVM_05_0017_1_1en05_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_023_1_1en05_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_15_1_1en05_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_30_16_00001_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_30_1_00001_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_30_1_1en05_False.m
| D	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| D	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| D	testsuite/data/distance/CanberraMetric_fnord.m
| D	testsuite/data/distance/CanberraWordDistance_60_0_False_DNA_3.m
| D	testsuite/data/distance/ChebyshewMetric_fnord.m
| D	testsuite/data/distance/EuclidianDistance_fnord.m
| D	testsuite/data/distance/GeodesicMetric_fnord.m
| D	testsuite/data/distance/HammingWordDistance_60_0_False_False_DNA_3.m
| D	testsuite/data/distance/HammingWordDistance_60_0_False_True_DNA_3.m
| D	testsuite/data/distance/JensenMetric_fnord.m
| D	testsuite/data/distance/ManhattanMetric_fnord.m
| D	testsuite/data/distance/ManhattanWordDistance_60_0_False_DNA_3.m
| D	testsuite/data/distance/MinkowskiMetric_13.m
| D	testsuite/data/distance/SparseEuclidianDistance_fnord.m
| D	testsuite/data/distribution/HMM_4_60_6_3_0_1en10_False_CUBE_1.m
| D	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| D	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| D	testsuite/data/kernel/AUC_15_Gaussian_10.m
| D	testsuite/data/kernel/Chi2_10_12.m
| D	testsuite/data/kernel/Combined_3_10_60_LinearString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| D	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernel/Const_230.m
| D	testsuite/data/kernel/Custom_7.m
| D	testsuite/data/kernel/Diag_230.m
| D	testsuite/data/kernel/Distance_CanberraMetric_17.m
| D	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| D	testsuite/data/kernel/GaussianShift_1_2_13.m
| D	testsuite/data/kernel/Gaussian_13.m
| D	testsuite/data/kernel/HistogramWord_60_0_DNA_3_False.m
| D	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| D	testsuite/data/kernel/LinearString_60_DNA.m
| D	testsuite/data/kernel/LinearWord_fnord.m
| D	testsuite/data/kernel/Linear_10.m
| D	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| D	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| D	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| D	testsuite/data/kernel/PolyMatchWord_3_False.m
| D	testsuite/data/kernel/PolyMatchWord_3_True.m
| D	testsuite/data/kernel/Poly_4_6_0_8_3_FK_False_True_01_1_CUBE_1_False.m
| D	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_False_True_01_1_CUBE_1_False.m
| D	testsuite/data/kernel/Poly_False_3_False.m
| D	testsuite/data/kernel/Poly_False_3_True.m
| D	testsuite/data/kernel/Poly_True_3_False.m
| D	testsuite/data/kernel/Poly_True_3_True.m
| D	testsuite/data/kernel/SalzbergWord_60_0_DNA_3_False.m
| D	testsuite/data/kernel/Sigmoid_07_10_05.m
| D	testsuite/data/kernel/Sigmoid_13_10_11.m
| D	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| D	testsuite/data/kernel/SparseGaussian_13.m
| D	testsuite/data/kernel/SparseLinear_10.m
| D	testsuite/data/kernel/SparsePoly_3_10_True_True.m
| D	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernel/WeightedDegreePositionString_60_1_DNA.m
| D	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| D	testsuite/data/kernel/WeightedDegreeString_60_1_DNA.m
| D	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| D	testsuite/data/kernel/WordMatch_3.m
| D	testsuite/data/preproc/LogPlusOne_Gaussian_12.m
| D	testsuite/data/preproc/NormOne_Gaussian_12.m
| D	testsuite/data/preproc/PruneVarSubMean_False_Gaussian_12.m
| D	testsuite/data/preproc/PruneVarSubMean_True_Gaussian_12.m
| D	testsuite/data/preproc/SortUlongString_2_60_0_False_DNA_CommUlongString_3_False.m
| D	testsuite/data/preproc/SortWordString_2_60_0_False_DNA_CommWordString_3_False.m
| D	testsuite/data/preproc/SortWord_LinearWord.m
| D	testsuite/data/regression/KRR_Gaussian_16_1en05_15.m
| D	testsuite/data/regression/KRR_Gaussian_1_1en05_15.m
| D	testsuite/data/regression/KRR_Gaussian_1_1en06_15.m
| D	testsuite/data/regression/LibSVR_0017_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_023_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_15_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_30_16_15_00001_Gaussian_0001.m
| D	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_0001.m
| D	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_30_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_0017_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_023_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_15_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_0001.m
| D	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_30_1_15_1en05_Gaussian_001.m
| M	testsuite/generator/classifier.py
| M	testsuite/matlab_and_octave/clustering.m
| M	testsuite/python-modular/clustering.py
| M	testsuite/python/clustering.py
|  
* commit 2e017dfef0f993be135f7b284286e06a19c779ec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 13 15:06:01 2008 +0000
| 
|     explicitly call init_random for distributions/clustering in generator, also limit accuracy for histogram as only 7 ascii digits are written out
| 
| M	testsuite/generator/clustering.py
| M	testsuite/generator/config.py
| M	testsuite/generator/distribution.py
|  
* commit efebea77601df95ef9096ebdeb4b846a737d9f34
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Aug 13 00:07:11 2008 +0000
| 
|     testsuite:
|     - SparseLinear classifiers and kernels with sparse features should work now in
|       static octave/matlab. Some classifiers, possibly need an adjustment in the
|       allowed accuracy to succeed, though.
| 
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/util/fix_kernel_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_features.m
| M	testsuite/matlab_and_octave/util/set_kernel.m
|  
* commit 758192baf6c4703c7516ccc39fd56dd105e9c120
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Aug 12 23:32:21 2008 +0000
| 
|     interface:
|     - Fixed issue because SVM parameter C was not passed on from guilib to
|       classifier in static interface.
| 
| M	src/guilib/GUIClassifier.cpp
|  
* commit 3b09f7ced6518d31efb643d037ab1fd36ee8259a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Aug 12 22:15:10 2008 +0000
| 
|     testsuite:
|     - Fixed issue with CustomKernel in octave modular.
| 
| M	testsuite/octave-modular/kernel.m
|  
* commit e23cccd176cd669dc5a52da0ac80927e45f1382f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Aug 12 20:37:38 2008 +0000
| 
|     testsuite:
|     - Modified constant random handling in various places.
| 
| M	testsuite/generator/__init__.py
| M	testsuite/generator/dataop.py
| M	testsuite/octave-modular/clustering.m
| M	testsuite/python-modular/test_one.py
| M	testsuite/python/test_one.py
| M	testsuite/r/clustering.R
| M	testsuite/r/test_one.R
|  
* commit 07086000d27059af331516e73ba315c0cb492120
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Aug 12 20:36:11 2008 +0000
| 
|     testsuite:
|     - Bugfix in shogun's random handling requires new data files.
| 
| M	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_023_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_15_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_1.m
| M	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_16.m
| M	testsuite/data/classifier/GPBTSVM_001_00001_Linear_30_15_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_0017_15_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_023_15_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_15_15_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_30_15_1.m
| M	testsuite/data/classifier/GPBTSVM_15_0001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/GPBTSVM_15_0001_00001_Gaussian_30_16.m
| M	testsuite/data/classifier/GPBTSVM_15_001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_0017_1.m
| M	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_023_1.m
| M	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_15_1.m
| M	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/KNN_EuclidianDistance_1_3.m
| M	testsuite/data/classifier/LDA_1_01.m
| M	testsuite/data/classifier/LibLinear_0017_1_1en05_True.m
| M	testsuite/data/classifier/LibLinear_023_1_1en05_True.m
| M	testsuite/data/classifier/LibLinear_15_1_1en05_True.m
| M	testsuite/data/classifier/LibLinear_30_16_00001_True.m
| M	testsuite/data/classifier/LibLinear_30_1_00001_True.m
| M	testsuite/data/classifier/LibLinear_30_1_1en05_True.m
| M	testsuite/data/classifier/LibSVMMultiClass_0017_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_023_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_15_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_15_0001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/LibSVMOneClass_15_0001_00001_Gaussian_30_16.m
| M	testsuite/data/classifier/LibSVMOneClass_15_001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_0017_1.m
| M	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_023_1.m
| M	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_15_1.m
| M	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/LibSVM_15_0001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/LibSVM_15_0001_00001_Gaussian_30_16.m
| M	testsuite/data/classifier/LibSVM_15_001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_0017_1.m
| M	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_023_1.m
| M	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_15_1.m
| M	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/MPDSVM_15_0001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/MPDSVM_15_0001_00001_Gaussian_30_16.m
| M	testsuite/data/classifier/MPDSVM_15_001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_0017_1.m
| M	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_023_1.m
| M	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_15_1.m
| M	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/Perceptron_1_01_1000.m
| M	testsuite/data/classifier/SVMLight_0001_00001_Linear_30_15_1.m
| M	testsuite/data/classifier/SVMLight_0001_00001_Linear_30_15_16.m
| M	testsuite/data/classifier/SVMLight_001_00001_Linear_30_15_1.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_0017_15_1.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_023_15_1.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_15_15_1.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_30_15_1.m
| M	testsuite/data/classifier/SVMLight_15_0001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/SVMLight_15_0001_00001_Gaussian_30_16.m
| M	testsuite/data/classifier/SVMLight_15_001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_0017_1.m
| M	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_023_1.m
| M	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_15_1.m
| M	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLin_0017_1_1en05_True.m
| M	testsuite/data/classifier/SVMLin_023_1_1en05_True.m
| M	testsuite/data/classifier/SVMLin_15_1_1en05_True.m
| M	testsuite/data/classifier/SVMLin_30_16_00001_True.m
| M	testsuite/data/classifier/SVMLin_30_1_00001_True.m
| M	testsuite/data/classifier/SVMLin_30_1_1en05_True.m
| M	testsuite/data/classifier/SVMOcas_0017_1_1en05_False.m
| M	testsuite/data/classifier/SVMOcas_023_1_1en05_False.m
| M	testsuite/data/classifier/SVMOcas_15_1_1en05_False.m
| M	testsuite/data/classifier/SVMOcas_30_16_00001_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_00001_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_1en05_False.m
| M	testsuite/data/classifier/SVMSGD_0017_1_1en05_True.m
| M	testsuite/data/classifier/SVMSGD_023_1_1en05_True.m
| M	testsuite/data/classifier/SVMSGD_15_1_1en05_True.m
| M	testsuite/data/classifier/SVMSGD_30_16_00001_True.m
| M	testsuite/data/classifier/SVMSGD_30_1_00001_True.m
| M	testsuite/data/classifier/SVMSGD_30_1_1en05_True.m
| M	testsuite/data/classifier/SubGradientSVM_05_0017_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_023_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1en05_False.m
| M	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| M	testsuite/data/distance/CanberraMetric_fnord.m
| M	testsuite/data/distance/CanberraWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/ChebyshewMetric_fnord.m
| M	testsuite/data/distance/EuclidianDistance_fnord.m
| M	testsuite/data/distance/GeodesicMetric_fnord.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_False_DNA_3.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_True_DNA_3.m
| M	testsuite/data/distance/JensenMetric_fnord.m
| M	testsuite/data/distance/ManhattanMetric_fnord.m
| M	testsuite/data/distance/ManhattanWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/MinkowskiMetric_13.m
| M	testsuite/data/distance/SparseEuclidianDistance_fnord.m
| M	testsuite/data/distribution/HMM_4_60_6_3_0_1en10_False_CUBE_1.m
| M	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| M	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| M	testsuite/data/kernel/AUC_15_Gaussian_10.m
| M	testsuite/data/kernel/Chi2_10_12.m
| M	testsuite/data/kernel/Combined_3_10_60_LinearString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| M	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/Const_230.m
| M	testsuite/data/kernel/Custom_7.m
| M	testsuite/data/kernel/Diag_230.m
| M	testsuite/data/kernel/Distance_CanberraMetric_17.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| M	testsuite/data/kernel/GaussianShift_1_2_13.m
| M	testsuite/data/kernel/Gaussian_13.m
| M	testsuite/data/kernel/HistogramWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LinearWord_fnord.m
| M	testsuite/data/kernel/Linear_10.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| M	testsuite/data/kernel/PolyMatchWord_3_False.m
| M	testsuite/data/kernel/PolyMatchWord_3_True.m
| M	testsuite/data/kernel/Poly_4_6_0_8_3_FK_False_True_01_1_CUBE_1_False.m
| M	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_False_True_01_1_CUBE_1_False.m
| M	testsuite/data/kernel/Poly_False_3_False.m
| M	testsuite/data/kernel/Poly_False_3_True.m
| M	testsuite/data/kernel/Poly_True_3_False.m
| M	testsuite/data/kernel/Poly_True_3_True.m
| M	testsuite/data/kernel/SalzbergWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/Sigmoid_07_10_05.m
| M	testsuite/data/kernel/Sigmoid_13_10_11.m
| M	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| M	testsuite/data/kernel/SparseGaussian_13.m
| M	testsuite/data/kernel/SparseLinear_10.m
| M	testsuite/data/kernel/SparsePoly_3_10_True_True.m
| M	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| M	testsuite/data/kernel/WordMatch_3.m
| M	testsuite/data/preproc/LogPlusOne_Gaussian_12.m
| M	testsuite/data/preproc/NormOne_Gaussian_12.m
| M	testsuite/data/preproc/PruneVarSubMean_False_Gaussian_12.m
| M	testsuite/data/preproc/PruneVarSubMean_True_Gaussian_12.m
| M	testsuite/data/preproc/SortUlongString_2_60_0_False_DNA_CommUlongString_3_False.m
| M	testsuite/data/preproc/SortWordString_2_60_0_False_DNA_CommWordString_3_False.m
| M	testsuite/data/preproc/SortWord_LinearWord.m
| M	testsuite/data/regression/KRR_Gaussian_16_1en05_15.m
| M	testsuite/data/regression/KRR_Gaussian_1_1en05_15.m
| M	testsuite/data/regression/KRR_Gaussian_1_1en06_15.m
| M	testsuite/data/regression/LibSVR_0017_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_023_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_15_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_30_16_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_30_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_0017_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_023_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_15_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_30_1_15_1en05_Gaussian_001.m
|  
* commit 20144de22768b6664e97a8c6b4d43368901bb2f6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Aug 12 19:15:17 2008 +0000
| 
|     testsuite:
|     - In octave-modular, forgot to rename a global variable at some stage which
|       made DistanceKernel crash.
| 
| M	testsuite/octave-modular/util/set_kernel.m
|  
* commit e0e5df8a0061625129a7c7ca74748c45cb6b8504
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Aug 12 19:12:00 2008 +0000
| 
|     testsuite:
|     - CustomKernel doesn't crash anymore in octave-modular, but testing still
|       isn't working properly.
| 
| M	testsuite/octave-modular/kernel.m
|  
* commit 55cb38f626effe09a5e24e3ef41261e74eb9f1ce
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Aug 12 18:45:35 2008 +0000
| 
|     testsuite:
|     - Enabled linear classifiers with sparse features for static interfaces
|       octave/matlab, alas something doesn't compute well.
| 
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/util/fix_classifier_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_features.m
|  
* commit d266884012338d805789abaa4717e399d63796f0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 12 14:53:11 2008 +0000
| 
|     fix a long standing bug in seeding the random number generator. now seeding is reliable, however all scripts relying on init_random will have to be adjusted
| 
| M	src/clustering/KMeans.cpp
| M	src/interface/SGInterface.cpp
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
|  
* commit de694f3ea9b15e5c8eb03dc7d6061f510d678c27
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 12 09:35:36 2008 +0000
| 
|     trap distance == NULL
| 
| M	src/kernel/DistanceKernel.cpp
|  
* commit 536508394e63b32212739fb3f20c60d7f5af49aa
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Aug 11 18:51:15 2008 +0000
| 
|     - Updated news.
| 
| M	src/NEWS
|  
* commit 1c2d4b6e5df9daecc1cfe1524949d6d667fac45f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Aug 11 18:47:17 2008 +0000
| 
|     weird crashes in modular octave:
|     - Does not seem to concern Soeren, but shogun crashes often when working with
|       classifiers in octave modular. a rearranging of the shogun modules loaded on
|       startup, like alphabetical sorting, seems to remedy this.
| 
| M	src/Makefile
|  
* commit 9ab2c20ee9fd4b40584ca352158783e76e12e8c6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Aug 10 17:50:01 2008 +0000
| 
|     testsuite:
|     - Added code random seeding for clustering in R static, which does not seem to
|       do much, though.
| 
| M	testsuite/r/clustering.R
|  
* commit a63fa493911f8f56196777630ae4d1ab71f2d2cf
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Aug 10 17:34:03 2008 +0000
| 
|     testsuite:
|     - Oops, forgot a checkin for R static.
| 
| A	testsuite/r/classifier.R
| M	testsuite/r/kernel.R
| M	testsuite/r/regression.R
| A	testsuite/r/util/fix_classifier_name_inconsistency.R
| M	testsuite/r/util/set_features.R
|  
* commit 8d6d1cf24fe8c0509f7e1a78c5bb2ea3566e19af
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 10 08:51:49 2008 +0000
| 
|     add make tests for matlab (works now for all except randomized algos :)
| 
| M	src/Makefile
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/kernel.m
| M	testsuite/matlab_and_octave/test_one.sh
|  
* commit efdc49de5abd5a8568b045d085e79cdd50abb01b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Aug 9 17:02:33 2008 +0000
| 
|     fix one liner normalization const function - however this still is not the right way to do it
| 
| M	src/kernel/WeightedDegreePositionStringKernel.h
|  
* commit 90cf054171402b3dfee04a3194ed4cbf0209257e
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Wed Aug 6 09:58:57 2008 +0000
| 
|     Added method to explicitly set the normalization.
| 
| M	src/kernel/WeightedDegreePositionStringKernel.h
|  
* commit df12a5f1fea0b1ff8719e89773acf79da9cb52f1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Aug 3 19:58:01 2008 +0000
| 
|     testsuite:
|     - Fixed erroneous regression_* in classifier for octave static.
| 
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/util/globals.m
|  
* commit 8d14a78c959c3a0cf50b873f4c6b7ae53f0f9e59
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Aug 3 19:30:31 2008 +0000
| 
|     testsuite:
|     - Added testing for clustering in R static. KMeans seems to calculate
|       different results, though.
| 
| A	testsuite/r/clustering.R
| M	testsuite/r/kernel.R
| M	testsuite/r/util/check_accuracy.R
| A	testsuite/r/util/fix_clustering_name_inconsistency.R
|  
* commit afc6969d3a70db37e88e03a3438bf24ec93fdd0c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Aug 3 19:09:08 2008 +0000
| 
|     testsuite:
|     - Added testing for distance in R static.
| 
| A	testsuite/r/distance.R
| M	testsuite/r/util/check_accuracy.R
| A	testsuite/r/util/set_distance.R
|  
* commit 52f6d8e82235f81f6fe5cad49b525084607a9631
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Aug 2 21:26:39 2008 +0000
| 
|     testsuite:
|     - Added testing for distribution in R static.
| 
| A	testsuite/r/distribution.R
| M	testsuite/r/util/check_accuracy.R
|  
* commit 480db8d9f4cb02b1ad80e4c02d18528c74b1ac56
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Aug 2 21:06:33 2008 +0000
| 
|     testsuite:
|     - Added testing for regression in R static.
|     - Some cosmetic modifications for kernel and preproc in R static.
| 
| M	testsuite/r/kernel.R
| M	testsuite/r/preproc.R
| A	testsuite/r/regression.R
| M	testsuite/r/util/check_accuracy.R
| A	testsuite/r/util/fix_regression_name_inconsistency.R
|  
* commit 35131de4c799a84c94b96e507d1d45b631cbf5cc
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Aug 2 20:08:47 2008 +0000
| 
|     testsuite:
|     - Added testing for preproc in r static.
| 
| A	testsuite/r/preproc.R
| A	testsuite/r/util/fix_preproc_name_inconsistency.R
|  
* commit 83ac8f7d4fd402fec823ae9d4601dcad702b1143
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Aug 2 02:35:34 2008 +0000
| 
|     testsuite:
|     - Testing for kernels in R static is now functional.
| 
| M	testsuite/r/kernel.R
| M	testsuite/r/test_all.sh
| M	testsuite/r/test_one.R
| M	testsuite/r/util/check_accuracy.R
| A	testsuite/r/util/convert_features_and_add_preproc.R
| A	testsuite/r/util/fix_distance_name_inconsistency.R
| A	testsuite/r/util/fix_kernel_name_inconsistency.R
| A	testsuite/r/util/fix_normalization_inconsistency.R
| M	testsuite/r/util/read_mfile.R
| M	testsuite/r/util/set_features.R
| M	testsuite/r/util/set_kernel.R
| A	testsuite/r/util/tobool.R
|  
* commit c9353f71bbaba6beba86b7fa48b7656d70a94cbc
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Aug 2 02:34:34 2008 +0000
| 
|     testsuite:
|     - An integer was erroneously specified as a string in subkernel-related data
|       files.
| 
| M	testsuite/data/kernel/AUC_15_Gaussian_10.m
| M	testsuite/data/kernel/Combined_3_10_60_LinearString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| M	testsuite/generator/kernel.py
| M	testsuite/matlab_and_octave/util/set_kernel.m
| M	testsuite/octave-modular/util/set_kernel.m
|  
* commit 3776da8d428487a5553104baf84ea4a2fed3c9f8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Aug 1 01:49:06 2008 +0000
| 
|     testsuite:
|     - Attempt at getting test for GaussianKernel working, but there seems
|       something broken when trying to use shogun in R.
| 
| A	testsuite/r/kernel.R
| D	testsuite/r/read_mfile.R
| D	testsuite/r/run.sh
| D	testsuite/r/test_R.R
| M	testsuite/r/test_all.sh
| D	testsuite/r/test_kernels.R
| A	testsuite/r/test_one.R
| A	testsuite/r/util/check_accuracy.R
| A	testsuite/r/util/read_mfile.R
| A	testsuite/r/util/set_features.R
| A	testsuite/r/util/set_kernel.R
|  
* commit 237f5ceb612f5a5d677a1c7588c8ba037ebb3961
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jul 31 21:01:33 2008 +0000
| 
|     testsuite:
|     - Replaced erroneous gamma_ through gamma in code related to Sigmoid kernel.
|     - Forgot to remove/add LinearWord data file with new filename.
| 
| D	testsuite/data/kernel/LinearWord.m
| A	testsuite/data/kernel/LinearWord_fnord.m
| M	testsuite/data/kernel/Sigmoid_07_10_05.m
| M	testsuite/data/kernel/Sigmoid_13_10_11.m
| M	testsuite/generator/config.py
| M	testsuite/matlab_and_octave/test_sigmoid_kernel.m
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_kernel.m
| M	testsuite/octave-modular/util/globals.m
| M	testsuite/octave-modular/util/set_kernel.m
|  
* commit 2357cc7df26f8f7549797cd9445af8e3d9a54e08
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 30 18:07:26 2008 +0000
| 
|     kernel:
|     - Little documentation fix in constructor.
| 
| M	src/kernel/SalzbergWordKernel.h
|  
* commit 25898d56c712a6b8af0f0f902e8604d28f3e9ca4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 30 00:32:37 2008 +0000
| 
|     testsuite:
|     - Forgot some line continuations in previous check-in.
| 
| M	testsuite/octave-modular/util/set_pos_and_neg.m
|  
* commit 8941c3bae0e1062a1b4a8df9200700e191e2c104
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 30 00:31:13 2008 +0000
| 
|     testsuite:
|     - Made testing for octave modular (hopefully) compatible to matlab, in case
|       there will be a modular interface for matlab in the future.
| 
| M	testsuite/octave-modular/classifier.m
| M	testsuite/octave-modular/clustering.m
| M	testsuite/octave-modular/distance.m
| M	testsuite/octave-modular/distribution.m
| M	testsuite/octave-modular/kernel.m
| M	testsuite/octave-modular/preproc.m
| M	testsuite/octave-modular/regression.m
| M	testsuite/octave-modular/test_all.sh
| M	testsuite/octave-modular/util/check_accuracy.m
| M	testsuite/octave-modular/util/set_distance.m
| M	testsuite/octave-modular/util/set_kernel.m
| M	testsuite/octave-modular/util/tobool.m
|  
* commit da79e24f3b5dbadd804db8c821e95d658b23210e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 30 00:07:44 2008 +0000
| 
|     testsuite:
|     - Made testing for static octave interface compatible with matlab.
| 
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/clustering.m
| M	testsuite/matlab_and_octave/distance.m
| M	testsuite/matlab_and_octave/distribution.m
| M	testsuite/matlab_and_octave/kernel.m
| M	testsuite/matlab_and_octave/preproc.m
| M	testsuite/matlab_and_octave/regression.m
| M	testsuite/matlab_and_octave/test_all.sh
| M	testsuite/matlab_and_octave/test_one.sh
| M	testsuite/matlab_and_octave/util/check_accuracy.m
| M	testsuite/matlab_and_octave/util/convert_features_and_add_preproc.m
| M	testsuite/matlab_and_octave/util/fix_classifier_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/fix_clustering_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/fix_distance_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/fix_kernel_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/fix_preproc_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/fix_regression_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/set_distance.m
| M	testsuite/matlab_and_octave/util/set_features.m
| M	testsuite/matlab_and_octave/util/set_kernel.m
| M	testsuite/matlab_and_octave/util/tobool.m
|  
* commit 1b85eebd7d3c896d5fadc2ae6d096bf24dd5004b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 29 20:52:11 2008 +0000
| 
|     testsuite:
|     - Incorporated goodies from octave modular into octave static.
| 
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/clustering.m
| M	testsuite/matlab_and_octave/distance.m
| M	testsuite/matlab_and_octave/distribution.m
| M	testsuite/matlab_and_octave/kernel.m
| M	testsuite/matlab_and_octave/preproc.m
| M	testsuite/matlab_and_octave/regression.m
| M	testsuite/matlab_and_octave/util/check_accuracy.m
| D	testsuite/matlab_and_octave/util/check_accuracy_classifier.m
| D	testsuite/matlab_and_octave/util/check_accuracy_distribution.m
| D	testsuite/matlab_and_octave/util/check_accuracy_hierarchical.m
| D	testsuite/matlab_and_octave/util/check_accuracy_kmeans.m
| M	testsuite/matlab_and_octave/util/convert_features_and_add_preproc.m
| D	testsuite/matlab_and_octave/util/set_and_train_distance.m
| D	testsuite/matlab_and_octave/util/set_and_train_kernel.m
| A	testsuite/matlab_and_octave/util/set_distance.m
| M	testsuite/matlab_and_octave/util/set_features.m
| A	testsuite/matlab_and_octave/util/set_kernel.m
|  
* commit c4b9a26ded24a828ce489d9d82db2827388dbb05
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 29 20:01:56 2008 +0000
| 
|     testsuite:
|     - Some issues in octave modular are not related to namespace, so the module
|       testers' names have been reverted to be in line with the other interfaces.
| 
| A	testsuite/octave-modular/classifier.m
| A	testsuite/octave-modular/clustering.m
| A	testsuite/octave-modular/distance.m
| A	testsuite/octave-modular/distribution.m
| A	testsuite/octave-modular/kernel.m
| A	testsuite/octave-modular/preproc.m
| A	testsuite/octave-modular/regression.m
| D	testsuite/octave-modular/test_classifier.m
| D	testsuite/octave-modular/test_clustering.m
| D	testsuite/octave-modular/test_distance.m
| D	testsuite/octave-modular/test_distribution.m
| D	testsuite/octave-modular/test_kernel.m
| M	testsuite/octave-modular/test_one.sh
| D	testsuite/octave-modular/test_preproc.m
| D	testsuite/octave-modular/test_regression.m
|  
* commit aed8cc112e300849b500baa8131b828ac1c9584c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 29 19:44:31 2008 +0000
| 
|     testsuite:
|     - Various cleanups for octave modular, like exception handling for
|       SV{M,R}Light, namespace (non-)issues and others.
| 
| M	testsuite/octave-modular/test_classifier.m
| M	testsuite/octave-modular/test_clustering.m
| M	testsuite/octave-modular/test_distance.m
| M	testsuite/octave-modular/test_distribution.m
| M	testsuite/octave-modular/test_kernel.m
| M	testsuite/octave-modular/test_preproc.m
| M	testsuite/octave-modular/test_regression.m
| M	testsuite/octave-modular/util/check_accuracy.m
| D	testsuite/octave-modular/util/check_accuracy_classifier.m
| D	testsuite/octave-modular/util/check_accuracy_distribution.m
| D	testsuite/octave-modular/util/check_accuracy_hierarchical.m
| D	testsuite/octave-modular/util/check_accuracy_kmeans.m
| M	testsuite/octave-modular/util/globals.m
| M	testsuite/octave-modular/util/set_distance.m
| M	testsuite/octave-modular/util/set_kernel.m
|  
* commit a59b1d2e2595c3500c7b1eaf6576ae880d62cd93
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jul 25 20:47:32 2008 +0000
| 
|     examples:
|     - Enabled LinearByteKernel for octave modular.
|     - Fixed a slightly wrong instantiation of AUCKernel.
| 
| M	examples/octave-modular/all_kernels.m
|  
* commit 949e0d586f2d7b928ab8c642c7c122be273a8997
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jul 25 20:46:26 2008 +0000
| 
|     testsuite:
|     - Implemented tests for kernels in octave modular.
| 
| M	testsuite/octave-modular/test_kernel.m
| M	testsuite/octave-modular/util/globals.m
| M	testsuite/octave-modular/util/set_distance.m
| M	testsuite/octave-modular/util/set_features.m
| M	testsuite/octave-modular/util/set_kernel.m
| M	testsuite/octave-modular/util/set_pie.m
| M	testsuite/octave-modular/util/set_pos_and_neg.m
|  
* commit d3c04f7432b213bdb487a3f6f6c7de9b320789a9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jul 25 17:30:29 2008 +0000
| 
|     testsuite:
|     - Implemented testsuite for classifiers in octave modular.
| 
| M	testsuite/octave-modular/test_classifier.m
| M	testsuite/octave-modular/util/globals.m
| M	testsuite/octave-modular/util/set_features.m
|  
* commit 0a6fac13e1184cf71e67ccd8f9543d64d957e8b7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 24 15:54:47 2008 +0000
| 
|     add example that shows loading/saving
| 
| A	examples/cmdline/libsvm.sg
|  
* commit fab70bb78f9745bc71bc926da2e047bf8ed8d946
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 24 13:47:58 2008 +0000
| 
|     fix documentation string and LDA / lapack compile error
| 
| M	src/guilib/GUIClassifier.cpp
| M	src/interface/SGInterface.cpp
|  
* commit 83cace1c0fa78003ad882cf1983e4c64552a4c17
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jul 24 01:24:13 2008 +0000
| 
|     testsuite:
|     - Some renaming due to forementioned issue.
|     - Testing for clustering, distribution and distance works now.
| 
| D	testsuite/octave-modular/classifier.m
| D	testsuite/octave-modular/clustering.m
| D	testsuite/octave-modular/distance.m
| D	testsuite/octave-modular/distribution.m
| D	testsuite/octave-modular/kernel.m
| D	testsuite/octave-modular/preproc.m
| D	testsuite/octave-modular/regression.m
| A	testsuite/octave-modular/test_classifier.m
| A	testsuite/octave-modular/test_clustering.m
| A	testsuite/octave-modular/test_distance.m
| A	testsuite/octave-modular/test_distribution.m
| A	testsuite/octave-modular/test_kernel.m
| M	testsuite/octave-modular/test_one.sh
| A	testsuite/octave-modular/test_preproc.m
| A	testsuite/octave-modular/test_regression.m
| M	testsuite/octave-modular/util/check_accuracy_distribution.m
| M	testsuite/octave-modular/util/globals.m
| M	testsuite/octave-modular/util/set_distance.m
| M	testsuite/octave-modular/util/set_features.m
| M	testsuite/octave-modular/util/set_kernel.m
|  
* commit 9e117730d6172efcb2753e8b5b77dee37929b22e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jul 24 01:23:09 2008 +0000
| 
|     testsuite:
|     - Namespace clashes in octave modular made it necessary to change filenames
|       that equal an octave (more specifically shogun) class name.
| 
| D	testsuite/data/distance/CanberraMetric.m
| A	testsuite/data/distance/CanberraMetric_fnord.m
| D	testsuite/data/distance/ChebyshewMetric.m
| A	testsuite/data/distance/ChebyshewMetric_fnord.m
| D	testsuite/data/distance/EuclidianDistance.m
| A	testsuite/data/distance/EuclidianDistance_fnord.m
| D	testsuite/data/distance/GeodesicMetric.m
| A	testsuite/data/distance/GeodesicMetric_fnord.m
| D	testsuite/data/distance/JensenMetric.m
| A	testsuite/data/distance/JensenMetric_fnord.m
| D	testsuite/data/distance/ManhattanMetric.m
| A	testsuite/data/distance/ManhattanMetric_fnord.m
| D	testsuite/data/distance/SparseEuclidianDistance.m
| A	testsuite/data/distance/SparseEuclidianDistance_fnord.m
| M	testsuite/generator/fileop.py
|  
* commit 3ff9fe903a9239da3e7df9b1574f40d672f6c218
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 23 19:51:18 2008 +0000
| 
|     testsuite:
|     - Implemented regression for octave modular.
|     - Various clean-ups in octave modular.
| 
| M	testsuite/octave-modular/classifier.m
| M	testsuite/octave-modular/clustering.m
| M	testsuite/octave-modular/distance.m
| M	testsuite/octave-modular/distribution.m
| M	testsuite/octave-modular/kernel.m
| M	testsuite/octave-modular/preproc.m
| M	testsuite/octave-modular/regression.m
| M	testsuite/octave-modular/test_all.sh
| M	testsuite/octave-modular/util/check_accuracy.m
| M	testsuite/octave-modular/util/check_accuracy_classifier.m
| M	testsuite/octave-modular/util/check_accuracy_distribution.m
| M	testsuite/octave-modular/util/check_accuracy_hierarchical.m
| M	testsuite/octave-modular/util/check_accuracy_kmeans.m
| M	testsuite/octave-modular/util/convert_features_and_add_preproc.m
| M	testsuite/octave-modular/util/set_distance.m
| M	testsuite/octave-modular/util/set_features.m
| M	testsuite/octave-modular/util/set_kernel.m
| M	testsuite/octave-modular/util/set_pie.m
| M	testsuite/octave-modular/util/set_pos_and_neg.m
|  
* commit 3ac138a02669152671c35c0351c3951ef398b05a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 23 18:39:50 2008 +0000
| 
|     testsuite:
|     - Previous change required a new build of data files with WordFeatures.
| 
| M	testsuite/data/classifier/SubGradientSVM_05_0017_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_023_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1en05_False.m
| M	testsuite/data/kernel/AUC_15_Gaussian_10.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearWord.m
| M	testsuite/data/kernel/PolyMatchWord_3_False.m
| M	testsuite/data/kernel/PolyMatchWord_3_True.m
| M	testsuite/data/kernel/WordMatch_3.m
| M	testsuite/data/preproc/SortWord_LinearWord.m
|  
* commit 76735c02f40de3422bb1b13d31649a4d0f35efbc
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 23 18:38:12 2008 +0000
| 
|     testsuite:
|     - Due to a misunderstanding, WordFeatures were put into cell arrays as strings
|       which is now fixed.
| 
| M	testsuite/generator/fileop.py
|  
* commit 661dce14fc5995b8a76a237a1b503469540da581
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jul 23 12:15:54 2008 +0000
| 
|     add save_classifier command (which will currently only work for SVMs)
| 
| M	src/NEWS
| M	src/classifier/svm/SVM.cpp
| M	src/guilib/GUICommands.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 352c73dad19cb9f38039d380f186f94b6b300050
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 23 01:32:49 2008 +0000
| 
|     testsuite:
|     - Added code for octave modular, preproc is almost working.
| 
| A	testsuite/octave-modular/classifier.m
| A	testsuite/octave-modular/clustering.m
| A	testsuite/octave-modular/distance.m
| A	testsuite/octave-modular/distribution.m
| A	testsuite/octave-modular/kernel.m
| A	testsuite/octave-modular/preproc.m
| A	testsuite/octave-modular/regression.m
| M	testsuite/octave-modular/test_all.sh
| A	testsuite/octave-modular/test_one.sh
| A	testsuite/octave-modular/util/check_accuracy.m
| A	testsuite/octave-modular/util/check_accuracy_classifier.m
| A	testsuite/octave-modular/util/check_accuracy_distribution.m
| A	testsuite/octave-modular/util/check_accuracy_hierarchical.m
| A	testsuite/octave-modular/util/check_accuracy_kmeans.m
| A	testsuite/octave-modular/util/convert_features_and_add_preproc.m
| A	testsuite/octave-modular/util/globals.m
| A	testsuite/octave-modular/util/set_distance.m
| A	testsuite/octave-modular/util/set_features.m
| A	testsuite/octave-modular/util/set_kernel.m
| A	testsuite/octave-modular/util/set_pie.m
| A	testsuite/octave-modular/util/set_pos_and_neg.m
| A	testsuite/octave-modular/util/tobool.m
|  
* commit d89e5fc2dac13815513e7049ac3ab3c12f8ba9bd
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 22 20:09:22 2008 +0000
| 
|     testsuite:
|     - Minor improvements for octave static.
| 
| M	testsuite/matlab_and_octave/util/convert_features_and_add_preproc.m
| M	testsuite/matlab_and_octave/util/set_and_train_distance.m
|  
* commit 15351ae434ce2693301b874c95babdeab195ebd5
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jul 21 23:10:58 2008 +0000
| 
|     testsuite:
|     - Testing for classifiers is now working in static octave.
|     - Slightly improved error handling, making runs of test_all.sh smoother in
|       static octave.
| 
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/clustering.m
| M	testsuite/matlab_and_octave/distance.m
| M	testsuite/matlab_and_octave/distribution.m
| M	testsuite/matlab_and_octave/kernel.m
| M	testsuite/matlab_and_octave/preproc.m
| M	testsuite/matlab_and_octave/regression.m
| M	testsuite/matlab_and_octave/util/set_and_train_kernel.m
| M	testsuite/matlab_and_octave/util/set_features.m
|  
* commit c99d146ec6863fa3a1d80b7b092d5a20c62c92b1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jul 21 22:35:31 2008 +0000
| 
|     testsuite:
|     - Testing for distributions now works in static octave.
| 
| M	testsuite/matlab_and_octave/distribution.m
| M	testsuite/matlab_and_octave/util/check_accuracy_distribution.m
|  
* commit 3e2f7e8eae894e374a15a6b641fc77bb16c88ef1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jul 21 22:21:15 2008 +0000
| 
|     testsuite:
|     - Tests for regression now work in octave static.
| 
| M	testsuite/matlab_and_octave/regression.m
| M	testsuite/matlab_and_octave/util/check_accuracy_classifier.m
|  
* commit 58942f8c33db6cb22784fa7f6f365af0af6fba70
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jul 21 22:09:25 2008 +0000
| 
|     testsuite:
|     - test_all now correctly identifies failing tests in octave static.
| 
| M	testsuite/matlab_and_octave/test_all.sh
|  
* commit 98579bbae405ae2f317a42fd7206e65370dc8c15
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jul 21 21:56:19 2008 +0000
| 
|     testsuite:
|     - All data files have been changed due to changes previous 2 commits.
| 
| D	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_023_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_023_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_15_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_15_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_00001_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_1.m
| M	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_16.m
| M	testsuite/data/classifier/GPBTSVM_001_00001_Linear_30_15_1.m
| D	testsuite/data/classifier/GPBTSVM_001_1e-05_Linear_0017_15_1.m
| D	testsuite/data/classifier/GPBTSVM_001_1e-05_Linear_023_15_1.m
| D	testsuite/data/classifier/GPBTSVM_001_1e-05_Linear_15_15_1.m
| D	testsuite/data/classifier/GPBTSVM_001_1e-05_Linear_30_15_1.m
| A	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_0017_15_1.m
| A	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_023_15_1.m
| A	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_15_15_1.m
| A	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_30_15_1.m
| M	testsuite/data/classifier/GPBTSVM_15_0001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/GPBTSVM_15_0001_00001_Gaussian_30_16.m
| M	testsuite/data/classifier/GPBTSVM_15_001_00001_Gaussian_30_1.m
| D	testsuite/data/classifier/GPBTSVM_15_001_1e-05_Gaussian_0017_1.m
| D	testsuite/data/classifier/GPBTSVM_15_001_1e-05_Gaussian_023_1.m
| D	testsuite/data/classifier/GPBTSVM_15_001_1e-05_Gaussian_15_1.m
| D	testsuite/data/classifier/GPBTSVM_15_001_1e-05_Gaussian_30_1.m
| A	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_0017_1.m
| A	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_023_1.m
| A	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_15_1.m
| A	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_023_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_023_1_3_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_15_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_15_1_3_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_30_1_3_DNA_True_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_023_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_15_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/KNN_EuclidianDistance_1_3.m
| M	testsuite/data/classifier/LDA_1_01.m
| D	testsuite/data/classifier/LibLinear_0017_1_1e-05_True.m
| A	testsuite/data/classifier/LibLinear_0017_1_1en05_True.m
| D	testsuite/data/classifier/LibLinear_023_1_1e-05_True.m
| A	testsuite/data/classifier/LibLinear_023_1_1en05_True.m
| D	testsuite/data/classifier/LibLinear_15_1_1e-05_True.m
| A	testsuite/data/classifier/LibLinear_15_1_1en05_True.m
| M	testsuite/data/classifier/LibLinear_30_16_00001_True.m
| M	testsuite/data/classifier/LibLinear_30_1_00001_True.m
| D	testsuite/data/classifier/LibLinear_30_1_1e-05_True.m
| A	testsuite/data/classifier/LibLinear_30_1_1en05_True.m
| D	testsuite/data/classifier/LibSVMMultiClass_0017_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_0017_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_023_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_023_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_15_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_15_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_00001_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_15_0001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/LibSVMOneClass_15_0001_00001_Gaussian_30_16.m
| M	testsuite/data/classifier/LibSVMOneClass_15_001_00001_Gaussian_30_1.m
| D	testsuite/data/classifier/LibSVMOneClass_15_001_1e-05_Gaussian_0017_1.m
| D	testsuite/data/classifier/LibSVMOneClass_15_001_1e-05_Gaussian_023_1.m
| D	testsuite/data/classifier/LibSVMOneClass_15_001_1e-05_Gaussian_15_1.m
| D	testsuite/data/classifier/LibSVMOneClass_15_001_1e-05_Gaussian_30_1.m
| A	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_0017_1.m
| A	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_023_1.m
| A	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_15_1.m
| A	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/LibSVM_15_0001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/LibSVM_15_0001_00001_Gaussian_30_16.m
| M	testsuite/data/classifier/LibSVM_15_001_00001_Gaussian_30_1.m
| D	testsuite/data/classifier/LibSVM_15_001_1e-05_Gaussian_0017_1.m
| D	testsuite/data/classifier/LibSVM_15_001_1e-05_Gaussian_023_1.m
| D	testsuite/data/classifier/LibSVM_15_001_1e-05_Gaussian_15_1.m
| D	testsuite/data/classifier/LibSVM_15_001_1e-05_Gaussian_30_1.m
| A	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_0017_1.m
| A	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_023_1.m
| A	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_15_1.m
| A	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/MPDSVM_15_0001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/MPDSVM_15_0001_00001_Gaussian_30_16.m
| M	testsuite/data/classifier/MPDSVM_15_001_00001_Gaussian_30_1.m
| D	testsuite/data/classifier/MPDSVM_15_001_1e-05_Gaussian_0017_1.m
| D	testsuite/data/classifier/MPDSVM_15_001_1e-05_Gaussian_023_1.m
| D	testsuite/data/classifier/MPDSVM_15_001_1e-05_Gaussian_15_1.m
| D	testsuite/data/classifier/MPDSVM_15_001_1e-05_Gaussian_30_1.m
| A	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_0017_1.m
| A	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_023_1.m
| A	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_15_1.m
| A	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/Perceptron_1_01_1000.m
| M	testsuite/data/classifier/SVMLight_0001_00001_Linear_30_15_1.m
| M	testsuite/data/classifier/SVMLight_0001_00001_Linear_30_15_16.m
| M	testsuite/data/classifier/SVMLight_001_00001_Linear_30_15_1.m
| D	testsuite/data/classifier/SVMLight_001_1e-05_Linear_0017_15_1.m
| D	testsuite/data/classifier/SVMLight_001_1e-05_Linear_023_15_1.m
| D	testsuite/data/classifier/SVMLight_001_1e-05_Linear_15_15_1.m
| D	testsuite/data/classifier/SVMLight_001_1e-05_Linear_30_15_1.m
| A	testsuite/data/classifier/SVMLight_001_1en05_Linear_0017_15_1.m
| A	testsuite/data/classifier/SVMLight_001_1en05_Linear_023_15_1.m
| A	testsuite/data/classifier/SVMLight_001_1en05_Linear_15_15_1.m
| A	testsuite/data/classifier/SVMLight_001_1en05_Linear_30_15_1.m
| M	testsuite/data/classifier/SVMLight_15_0001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/SVMLight_15_0001_00001_Gaussian_30_16.m
| M	testsuite/data/classifier/SVMLight_15_001_00001_Gaussian_30_1.m
| D	testsuite/data/classifier/SVMLight_15_001_1e-05_Gaussian_0017_1.m
| D	testsuite/data/classifier/SVMLight_15_001_1e-05_Gaussian_023_1.m
| D	testsuite/data/classifier/SVMLight_15_001_1e-05_Gaussian_15_1.m
| D	testsuite/data/classifier/SVMLight_15_001_1e-05_Gaussian_30_1.m
| A	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_0017_1.m
| A	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_023_1.m
| A	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_15_1.m
| A	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_023_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_15_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| D	testsuite/data/classifier/SVMLin_0017_1_1e-05_True.m
| A	testsuite/data/classifier/SVMLin_0017_1_1en05_True.m
| D	testsuite/data/classifier/SVMLin_023_1_1e-05_True.m
| A	testsuite/data/classifier/SVMLin_023_1_1en05_True.m
| D	testsuite/data/classifier/SVMLin_15_1_1e-05_True.m
| A	testsuite/data/classifier/SVMLin_15_1_1en05_True.m
| M	testsuite/data/classifier/SVMLin_30_16_00001_True.m
| M	testsuite/data/classifier/SVMLin_30_1_00001_True.m
| D	testsuite/data/classifier/SVMLin_30_1_1e-05_True.m
| A	testsuite/data/classifier/SVMLin_30_1_1en05_True.m
| D	testsuite/data/classifier/SVMOcas_0017_1_1e-05_False.m
| A	testsuite/data/classifier/SVMOcas_0017_1_1en05_False.m
| D	testsuite/data/classifier/SVMOcas_023_1_1e-05_False.m
| A	testsuite/data/classifier/SVMOcas_023_1_1en05_False.m
| D	testsuite/data/classifier/SVMOcas_15_1_1e-05_False.m
| A	testsuite/data/classifier/SVMOcas_15_1_1en05_False.m
| M	testsuite/data/classifier/SVMOcas_30_16_00001_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_00001_False.m
| D	testsuite/data/classifier/SVMOcas_30_1_1e-05_False.m
| A	testsuite/data/classifier/SVMOcas_30_1_1en05_False.m
| D	testsuite/data/classifier/SVMSGD_0017_1_1e-05_True.m
| A	testsuite/data/classifier/SVMSGD_0017_1_1en05_True.m
| D	testsuite/data/classifier/SVMSGD_023_1_1e-05_True.m
| A	testsuite/data/classifier/SVMSGD_023_1_1en05_True.m
| D	testsuite/data/classifier/SVMSGD_15_1_1e-05_True.m
| A	testsuite/data/classifier/SVMSGD_15_1_1en05_True.m
| M	testsuite/data/classifier/SVMSGD_30_16_00001_True.m
| M	testsuite/data/classifier/SVMSGD_30_1_00001_True.m
| D	testsuite/data/classifier/SVMSGD_30_1_1e-05_True.m
| A	testsuite/data/classifier/SVMSGD_30_1_1en05_True.m
| D	testsuite/data/classifier/SubGradientSVM_05_0017_1_1e-05_False.m
| A	testsuite/data/classifier/SubGradientSVM_05_0017_1_1en05_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_023_1_1e-05_False.m
| A	testsuite/data/classifier/SubGradientSVM_05_023_1_1en05_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05_False.m
| A	testsuite/data/classifier/SubGradientSVM_05_15_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05_False.m
| A	testsuite/data/classifier/SubGradientSVM_05_30_1_1en05_False.m
| M	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| M	testsuite/data/distance/CanberraMetric.m
| M	testsuite/data/distance/CanberraWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/ChebyshewMetric.m
| M	testsuite/data/distance/EuclidianDistance.m
| M	testsuite/data/distance/GeodesicMetric.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_False_DNA_3.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_True_DNA_3.m
| M	testsuite/data/distance/JensenMetric.m
| M	testsuite/data/distance/ManhattanMetric.m
| M	testsuite/data/distance/ManhattanWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/MinkowskiMetric_13.m
| M	testsuite/data/distance/SparseEuclidianDistance.m
| D	testsuite/data/distribution/HMM_4_60_6_3_0_1e-10_False_CUBE_1.m
| A	testsuite/data/distribution/HMM_4_60_6_3_0_1en10_False_CUBE_1.m
| M	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| M	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| M	testsuite/data/kernel/AUC_15_Gaussian_10.m
| M	testsuite/data/kernel/Chi2_10_12.m
| M	testsuite/data/kernel/Combined_3_10_60_LinearString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| M	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/Const_230.m
| M	testsuite/data/kernel/Custom_7.m
| M	testsuite/data/kernel/Diag_230.m
| M	testsuite/data/kernel/Distance_CanberraMetric_17.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| M	testsuite/data/kernel/GaussianShift_1_2_13.m
| M	testsuite/data/kernel/Gaussian_13.m
| M	testsuite/data/kernel/HistogramWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LinearWord.m
| M	testsuite/data/kernel/Linear_10.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| M	testsuite/data/kernel/PolyMatchWord_3_False.m
| M	testsuite/data/kernel/PolyMatchWord_3_True.m
| M	testsuite/data/kernel/Poly_4_6_0_8_3_FK_False_True_01_1_CUBE_1_False.m
| M	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_False_True_01_1_CUBE_1_False.m
| M	testsuite/data/kernel/Poly_False_3_False.m
| M	testsuite/data/kernel/Poly_False_3_True.m
| M	testsuite/data/kernel/Poly_True_3_False.m
| M	testsuite/data/kernel/Poly_True_3_True.m
| M	testsuite/data/kernel/SalzbergWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/Sigmoid_07_10_05.m
| M	testsuite/data/kernel/Sigmoid_13_10_11.m
| M	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| M	testsuite/data/kernel/SparseGaussian_13.m
| M	testsuite/data/kernel/SparseLinear_10.m
| M	testsuite/data/kernel/SparsePoly_3_10_True_True.m
| M	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| M	testsuite/data/kernel/WordMatch_3.m
| M	testsuite/data/preproc/LogPlusOne_Gaussian_12.m
| M	testsuite/data/preproc/NormOne_Gaussian_12.m
| M	testsuite/data/preproc/PruneVarSubMean_False_Gaussian_12.m
| M	testsuite/data/preproc/PruneVarSubMean_True_Gaussian_12.m
| M	testsuite/data/preproc/SortUlongString_2_60_0_False_DNA_CommUlongString_3_False.m
| M	testsuite/data/preproc/SortWordString_2_60_0_False_DNA_CommWordString_3_False.m
| M	testsuite/data/preproc/SortWord_LinearWord.m
| D	testsuite/data/regression/KRR_Gaussian_16_1e-05_15.m
| A	testsuite/data/regression/KRR_Gaussian_16_1en05_15.m
| D	testsuite/data/regression/KRR_Gaussian_1_1e-05_15.m
| D	testsuite/data/regression/KRR_Gaussian_1_1e-06_15.m
| A	testsuite/data/regression/KRR_Gaussian_1_1en05_15.m
| A	testsuite/data/regression/KRR_Gaussian_1_1en06_15.m
| D	testsuite/data/regression/LibSVR_0017_1_15_1e-05_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_0017_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_023_1_15_1e-05_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_023_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_15_1_15_1e-05_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_15_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_30_16_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_30_1_15_1e-05_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_30_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_0017_1_15_1e-05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_0017_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_023_1_15_1e-05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_023_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_15_1_15_1e-05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_15_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_30_1_15_1e-05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_30_1_15_1en05_Gaussian_001.m
|  
* commit 496662e97f753fa13afb34185a72a748a7d24801
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jul 21 21:49:25 2008 +0000
| 
|     testsuite:
|     - Generator now replaces '+' by 'p' and '-' by 'n' in data filenames, as
|       octave (and presumably matlab) don't like these in filenames
| 
| M	testsuite/generator/fileop.py
|  
* commit 97db368b95df6479eb81da90fdef2a08a8652f2b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jul 21 21:25:22 2008 +0000
| 
|     testsuite:
|     - Attach a semi-colon to the end of lines of data files which bodes well
|       with octave and matlab.
| 
| M	testsuite/generator/fileop.py
| M	testsuite/python-modular/test_one.py
| M	testsuite/python/test_one.py
|  
* commit a80c9c708209152f93ad7e76232bcfb9fbc34de1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jul 18 19:50:23 2008 +0000
| 
|     testsuite:
|     - Added convenience function to convert to booleans for octave static.
| 
| M	testsuite/matlab_and_octave/preproc.m
| M	testsuite/matlab_and_octave/util/set_and_train_distance.m
| M	testsuite/matlab_and_octave/util/set_and_train_kernel.m
| A	testsuite/matlab_and_octave/util/tobool.m
|  
* commit 653ce2fdabc9052b68d0f421febb21291ad7ec76
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jul 18 19:28:31 2008 +0000
| 
|     testsuite:
|     - Added classifier/distribution/regression to octave static, but none of these
|       actually work due to unresolved filename/evaluation (e.g. 1e-05) issues.
| 
| A	testsuite/matlab_and_octave/classifier.m
| A	testsuite/matlab_and_octave/distribution.m
| A	testsuite/matlab_and_octave/regression.m
| A	testsuite/matlab_and_octave/util/check_accuracy_classifier.m
| A	testsuite/matlab_and_octave/util/check_accuracy_distribution.m
| M	testsuite/matlab_and_octave/util/globals.m
|  
* commit 29b23fefac064ed78e4fbd20c7d30fa01fb1264e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jul 17 22:10:35 2008 +0000
| 
|     testsuite:
|     - Added testing of clustering to octave static interface.
| 
| A	testsuite/matlab_and_octave/clustering.m
| A	testsuite/matlab_and_octave/util/check_accuracy_hierarchical.m
| A	testsuite/matlab_and_octave/util/check_accuracy_kmeans.m
| M	testsuite/matlab_and_octave/util/globals.m
|  
* commit aca3305a7ea45d01bcc677e083883c43ac1da5ee
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jul 17 21:29:47 2008 +0000
| 
|     testsuite:
|     - Added support for distances for octave static.
|     - Added a semicolon to one line's end in kernel tester to suppress unnecessary
|       output.
|     - Added global variables for regression testing.
| 
| A	testsuite/matlab_and_octave/distance.m
| M	testsuite/matlab_and_octave/kernel.m
| M	testsuite/matlab_and_octave/util/check_accuracy.m
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_and_train_distance.m
|  
* commit b9af70a8618409e5cef8096b83695532a73b60dc
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 16 22:08:41 2008 +0000
| 
|     testsuite:
|     - Modified functions to return boolean values instead of 0/1.
| 
| M	testsuite/matlab_and_octave/kernel.m
| M	testsuite/matlab_and_octave/preproc.m
| M	testsuite/matlab_and_octave/util/check_accuracy.m
| M	testsuite/matlab_and_octave/util/convert_features_and_add_preproc.m
| M	testsuite/matlab_and_octave/util/fix_classifier_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/fix_clustering_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/fix_regression_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/set_and_train_distance.m
| M	testsuite/matlab_and_octave/util/set_and_train_kernel.m
| M	testsuite/matlab_and_octave/util/set_features.m
|  
* commit 50704b1ce8e88ded200d0c1c8c84b9e395bd55c6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 16 21:16:46 2008 +0000
| 
|     interface:
|     - Fixed segfault issue when attaching preprocs.
| 
| M	src/guilib/GUIPreProc.cpp
|  
* commit 3672231e72ff88f1845892ac700106179474425b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 16 21:10:07 2008 +0000
| 
|     testsuite:
|     - Added support fore preprocs in octave static.
| 
| A	testsuite/matlab_and_octave/preproc.m
| M	testsuite/matlab_and_octave/util/fix_preproc_name_inconsistency.m
|  
* commit 4f2096f342a773e72a89b05c350f173334a29057
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 15 22:27:00 2008 +0000
| 
|     testsuite:
|     - Implemented non-handling of FK/TOP features in static octave interface.
| 
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_and_train_kernel.m
| M	testsuite/matlab_and_octave/util/set_features.m
|  
* commit ba7ca3a9241f2c92234eccb97a800bd95bc2851a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 15 22:26:15 2008 +0000
| 
|     testsuite:
|     - Tuned data file generation to exclude a superflous array which makes octave
|       choke on parsing the file. Only happened to exist for FK/TOP features.
| 
| A	testsuite/data/kernel/Poly_4_6_0_8_3_FK_False_True_01_1_CUBE_1_False.m
| D	testsuite/data/kernel/Poly_4_6_0_8_3_FK_True_False_01_1_CUBE_1_False.m
| A	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_False_True_01_1_CUBE_1_False.m
| D	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_True_False_01_1_CUBE_1_False.m
| M	testsuite/generator/kernel.py
|  
* commit f2821599944417af578f2ce8bf8816c935dc85e9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 15 21:17:02 2008 +0000
| 
|     testsuite:
|     - Implemented testing for Combined kernel in octave static.
| 
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_and_train_kernel.m
| M	testsuite/matlab_and_octave/util/set_features.m
|  
* commit 6bd26f64a102ac860c230ef71e0848594d22debe
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 15 02:18:39 2008 +0000
| 
|     testsuite:
|     - Tests for kernels for octave static now working, except for Combined and
|       FK/TOP (and the ones not supported by static interface).
| 
| M	testsuite/matlab_and_octave/kernel.m
| M	testsuite/matlab_and_octave/test_all.sh
| M	testsuite/matlab_and_octave/test_one.sh
| M	testsuite/matlab_and_octave/util/convert_features_and_add_preproc.m
| M	testsuite/matlab_and_octave/util/fix_kernel_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_and_train_kernel.m
| M	testsuite/matlab_and_octave/util/set_features.m
|  
* commit c58b5fee45e4bd400d61b21f41ecd60ca5383804
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 15 00:58:35 2008 +0000
| 
|     testsuite:
|     - Adjusted testers for python static and modular to previous changes.
| 
| M	testsuite/python-modular/test_one.py
| M	testsuite/python/test_one.py
|  
* commit 336ba0e4149642506b2093ea423ada24550051d9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 15 00:56:24 2008 +0000
| 
|     testsuite:
|     - Data types which are not int, long, float or complex are now put into cell
|       arrays. Hence requiring a change of a bunch of data files.
| 
| M	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_1.m
| M	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_16.m
| M	testsuite/data/classifier/GPBTSVM_001_00001_Linear_30_15_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1e-05_Linear_15_15_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1e-05_Linear_30_15_1.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_023_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_023_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_15_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_15_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMOcas_30_16_00001_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_00001_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_0017_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_023_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05_False.m
| M	testsuite/data/distance/CanberraWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_False_DNA_3.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_True_DNA_3.m
| M	testsuite/data/distance/ManhattanWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distribution/HMM_4_60_6_3_0_1e-10_False_CUBE_1.m
| M	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| M	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| M	testsuite/data/kernel/AUC_15_Gaussian_10.m
| M	testsuite/data/kernel/Combined_3_10_60_LinearString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| M	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| M	testsuite/data/kernel/HistogramWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LinearWord.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| M	testsuite/data/kernel/PolyMatchWord_3_False.m
| M	testsuite/data/kernel/PolyMatchWord_3_True.m
| M	testsuite/data/kernel/Poly_4_6_0_8_3_FK_True_False_01_1_CUBE_1_False.m
| M	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_True_False_01_1_CUBE_1_False.m
| M	testsuite/data/kernel/SalzbergWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| M	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| M	testsuite/data/kernel/WordMatch_3.m
| M	testsuite/data/preproc/SortUlongString_2_60_0_False_DNA_CommUlongString_3_False.m
| M	testsuite/data/preproc/SortWordString_2_60_0_False_DNA_CommWordString_3_False.m
| M	testsuite/data/preproc/SortWord_LinearWord.m
| M	testsuite/generator/fileop.py
|  
* commit a516e49314673db57f189eb87cd1a8577d14031e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jul 10 22:36:06 2008 +0000
| 
|     interface/examples/testsuite:
|     - Fixed missing ! bug in octave interface for reading boolean values, changed
|       examples/testsuite accordingly.
| 
| M	examples/matlab_and_octave/all_classifier.m
| M	examples/matlab_and_octave/all_kernels.m
| M	examples/matlab_and_octave/all_preproc.m
| M	examples/matlab_and_octave/graphical/mkl_pseudo_dna.m
| M	examples/matlab_and_octave/graphical/spec_interp.m
| M	examples/matlab_and_octave/graphical/test_poim_wds.m
| M	examples/matlab_and_octave/graphical/test_regression_mkl.m
| M	examples/matlab_and_octave/graphical/test_spec_interp.m
| M	examples/matlab_and_octave/graphical/test_wd_wds_parallel.m
| M	examples/matlab_and_octave/graphical/wds_consensus.m
| M	examples/matlab_and_octave/graphical/wds_shift_interp.m
| M	examples/matlab_and_octave/liblinear.m
| M	examples/matlab_and_octave/lpboost.m
| M	examples/matlab_and_octave/lpm.m
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
| M	examples/matlab_and_octave/mkl_regression_3sine_waves.m
| M	examples/matlab_and_octave/mkl_regression_sine.m
| M	examples/matlab_and_octave/spec_kernel.m
| M	examples/matlab_and_octave/string_features.m
| M	examples/matlab_and_octave/svmocas.m
| M	examples/matlab_and_octave/svmsgd.m
| M	examples/matlab_and_octave/wd_kernel.m
| M	examples/matlab_and_octave/wds_kernel.m
| M	examples/matlab_and_octave/weighted_spec.m
| M	src/interface/OctaveInterface.cpp
| M	testsuite/matlab_and_octave/util/set_and_train_kernel.m
|  
* commit dd249144f3a3953d623403c525aed6f3834c4110
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jul 10 21:43:56 2008 +0000
| 
|     structure:
|     - Compile fix: commented non-existing call to print method.
| 
| M	src/structure/DynProg.cpp
|  
* commit c4ec278fa5c5bb57f0085cbc7ca219d41889999d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 8 23:10:13 2008 +0000
| 
|     testsuite:
|     - Added support for kernels using REAL features.
| 
| M	testsuite/matlab_and_octave/util/fix_distance_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_and_train_kernel.m
| M	testsuite/matlab_and_octave/util/set_features.m
|  
* commit 32df2568c1aa2150bfbb85624c6338c4781a0d8d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 8 18:12:41 2008 +0000
| 
|     testsuite:
|     - Got rid of erroneous name_kernel (should have been kernel_name) in data
|       files and hence in interface-specific testsuites.
| 
| M	testsuite/data/preproc/LogPlusOne_Gaussian_12.m
| M	testsuite/data/preproc/NormOne_Gaussian_12.m
| A	testsuite/data/preproc/PruneVarSubMean_False_Gaussian_12.m
| D	testsuite/data/preproc/PruneVarSubMean_Gaussian_False_12.m
| D	testsuite/data/preproc/PruneVarSubMean_Gaussian_True_12.m
| A	testsuite/data/preproc/PruneVarSubMean_True_Gaussian_12.m
| A	testsuite/data/preproc/SortUlongString_2_60_0_False_DNA_CommUlongString_3_False.m
| D	testsuite/data/preproc/SortUlongString_2_CommUlongString_60_0_False_DNA_3_False.m
| A	testsuite/data/preproc/SortWordString_2_60_0_False_DNA_CommWordString_3_False.m
| D	testsuite/data/preproc/SortWordString_2_CommWordString_60_0_False_DNA_3_False.m
| M	testsuite/data/preproc/SortWord_LinearWord.m
| M	testsuite/generator/preproc.py
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_and_train_kernel.m
| M	testsuite/python-modular/preproc.py
| M	testsuite/python/util.py
|  
* commit 3a676ba4694c3801320546ef4802cdd19f89a18d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jul 7 23:25:38 2008 +0000
| 
|     testsuite:
|     - Seemingly one test for Sigmoid kernel now working.
| 
| M	testsuite/matlab_and_octave/kernel.m
| D	testsuite/matlab_and_octave/run_matlab.sh
| D	testsuite/matlab_and_octave/run_octave.sh
| M	testsuite/matlab_and_octave/test_all.sh
| D	testsuite/matlab_and_octave/test_matlab.m
| D	testsuite/matlab_and_octave/test_octave.m
| A	testsuite/matlab_and_octave/test_one.sh
| A	testsuite/matlab_and_octave/util/check_accuracy.m
| A	testsuite/matlab_and_octave/util/globals.m
| A	testsuite/matlab_and_octave/util/set_and_train_distance.m
| A	testsuite/matlab_and_octave/util/set_and_train_kernel.m
| M	testsuite/matlab_and_octave/util/set_features.m
|  
* commit b3d431ab68df50c437946d3a21c44ff643967176
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Jul 5 19:15:08 2008 +0000
| 
|     in semi-markov dynamic programming code:
|     * changed max_look_back default length
|     * new version of code only looks at transitions that are actually allowed
|     * some more outputs about max_look_back
| 
| M	src/structure/DynProg.cpp
|  
* commit 069ec3cb2c30561e5a78c7c40e83cc88051e391d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Jul 5 00:01:27 2008 +0000
| 
|     testsuite:
|     - Creeping towards testsuite for octave static.
| 
| A	testsuite/matlab_and_octave/kernel.m
| M	testsuite/matlab_and_octave/test_all.sh
| D	testsuite/matlab_and_octave/test_kernels.m
| M	testsuite/matlab_and_octave/test_octave.m
| A	testsuite/matlab_and_octave/util/convert_features_and_add_preproc.m
| A	testsuite/matlab_and_octave/util/fix_classifier_name_inconsistency.m
| A	testsuite/matlab_and_octave/util/fix_clustering_name_inconsistency.m
| A	testsuite/matlab_and_octave/util/fix_distance_name_inconsistency.m
| A	testsuite/matlab_and_octave/util/fix_kernel_name_inconsistency.m
| A	testsuite/matlab_and_octave/util/fix_normalization_inconsistency.m
| A	testsuite/matlab_and_octave/util/fix_preproc_name_inconsistency.m
| A	testsuite/matlab_and_octave/util/fix_regression_name_inconsistency.m
| A	testsuite/matlab_and_octave/util/set_features.m
|  
* commit 8d74302d05a7f76e2009cdb60cd881f74a210d5d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jul 4 00:36:52 2008 +0000
| 
|     testsuite:
|     - Cosmetic cleanup in testsuite for python static.
| 
| M	testsuite/python/classifier.py
| M	testsuite/python/clustering.py
| M	testsuite/python/distance.py
| M	testsuite/python/distribution.py
| M	testsuite/python/kernel.py
| M	testsuite/python/preproc.py
| M	testsuite/python/regression.py
|  
* commit d3256f648352283c05a04755cc524ac597178a83
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jul 3 19:43:18 2008 +0000
| 
|     interface:
|     - Very similar fix to previous KRR, but tube_epsilon wasn't actually set in
|       classifier for LibSVR/SVR_Light.
| 
| M	src/guilib/GUIClassifier.cpp
|  
* commit b66d44163c37ae30fbaa2937f9cb5f6676667af8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jul 3 19:28:44 2008 +0000
| 
|     interface:
|     - Fixed bug in KRR regression which did not set tau properly within the
|       initialised 'classifier'.
| 
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
|  
* commit 98d8962dafc54b6ee923ab19fa6cfff6732bd29f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jul 3 19:02:22 2008 +0000
| 
|     interface/testsuite:
|     - Changed default value for scale parameter of Linear kernels in static
|       interface, so that testsuite for python static now succeeds.
| 
| M	src/interface/SGInterface.cpp
| M	testsuite/python/util.py
|  
* commit d899271ad43073cafee33edaa6d25189254cee8a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jul 3 01:14:10 2008 +0000
| 
|     testsuite/interface:
|     - static and modular interfaces now do the same in Hierarchical clustering,
|       not sure if it is the correct sameness, though.
| 
| M	src/clustering/Hierarchical.h
| M	src/guilib/GUIClassifier.cpp
| M	testsuite/python/clustering.py
|  
* commit 83c4c6bba6ef9a57587be9adf70fc4695252d9ab
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 2 23:03:46 2008 +0000
| 
|     testsuite/interface:
|     - Changed default for nu in static interfaces to the same value as in the
|       SVM class. classifier testsuite for python static should now run through.
| 
| M	src/guilib/GUIClassifier.cpp
| M	testsuite/python/classifier.py
|  
* commit 870c56f08c47ce30bab8bb7367c63a3301fce4d4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jul 2 12:52:19 2008 +0000
| 
|     fix spelling
| 
| M	doc/pages/Methods.mainpage
|  
* commit 1a489e7a0dd389d1b96b4446bc2684b680146c2c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 1 19:41:43 2008 +0000
| 
|     interface:
|     - Added parameter gamma to training of classifier LDA which makes testsuite
|       for python static succeed on it.
| 
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/interface/SGInterface.cpp
|  
* commit 3b59c1c207b108eeb2880527e2c94b1aae7563a2
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 1 19:14:05 2008 +0000
| 
|     testsuite:
|     - python static now handles alpha/bias situation gracefully.
| 
| M	testsuite/python/classifier.py
|  
* commit 8a7597d41171f310aaeaa430ecfac6256c2be17d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jun 30 20:41:12 2008 +0000
| 
|     kernel:
|     - Fixed compile warnings in OligoKernel.
| 
| M	src/kernel/OligoKernel.cpp
|  
* commit 6fcb15516f3ca9cb6e052e169b09cd1ff1ce994a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Jun 28 23:10:48 2008 +0000
| 
|     kernel/interface/testsuite/examples:
|     - SalzbergWordKernel: made set_prior_probs available to static interfaces,
|       added set_prior_probs_from_labels to the kernel, adjusted testgenerator
|       and python static/modular examples and testsuite.
| 
| M	examples/python-modular/all_kernels.py
| M	examples/python/all_kernels.py
| M	src/guilib/GUICommands.h
| M	src/guilib/GUIKernel.cpp
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.h
| M	testsuite/python/util.py
|  
* commit a5d3b6475725334fa80fde7177a3ca5a3a1cc1ff
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jun 27 20:19:01 2008 +0000
| 
|     testsuite:
|     - Improved error/not implemented handling for features in python static.
| 
| M	testsuite/python/classifier.py
| M	testsuite/python/distance.py
| M	testsuite/python/kernel.py
| M	testsuite/python/util.py
|  
* commit bdf4265d1c526a8fe31e49355948bf5ddcd0b3e4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jun 27 01:14:24 2008 +0000
| 
|     testsuite:
|     - Implemented tests for regression in python static. Many tests fail, though.
| 
| M	testsuite/python/regression.py
| M	testsuite/python/util.py
|  
* commit d98d8735ecb7738254c185b2a04d55ea828eb72b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jun 27 00:36:05 2008 +0000
| 
|     testsuite:
|     - Added preproc handling to testsuite for python static.
| 
| M	testsuite/python/preproc.py
| M	testsuite/python/util.py
|  
* commit fdad2e5b841f6d130fd09958c5293f7a9597a457
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jun 27 00:24:33 2008 +0000
| 
|     testsuite:
|     - Implemented testsuite for kernels in python static - a few compute quite
|       different results than python modular, though.
| 
| M	testsuite/python/classifier.py
| M	testsuite/python/clustering.py
| M	testsuite/python/distance.py
| M	testsuite/python/distribution.py
| M	testsuite/python/kernel.py
| M	testsuite/python/util.py
|  
* commit 9e207aee3e7364c084a0d7367dd2133096975c19
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 25 03:05:38 2008 +0000
| 
|     fix libsm script (init_shogun missing)
| 
| M	examples/octave-modular/libsvm.m
|  
* commit 151ca04e40c5252d89ea0201fe27935a2fb10d8d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jun 24 23:45:14 2008 +0000
| 
|     testsuite:
|     - Somewhat implemented testing for static python distance and distribution,
|       the latter one lacking of a complete interface implementation to make it
|       useful.
| 
| M	testsuite/python/classifier.py
| M	testsuite/python/distance.py
| M	testsuite/python/distribution.py
| M	testsuite/python/util.py
|  
* commit d79c8d83836036f60b5a2280fdba2cb49ee3be50
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jun 24 23:01:37 2008 +0000
| 
|     interface:
|     - Fixed a bug when counting arguments for HammingWordDistance.
| 
| M	src/interface/SGInterface.cpp
|  
* commit c27e442116d61804551e46f3e47ecbeccd76ec6c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jun 24 22:30:04 2008 +0000
| 
|     testsuite:
|     - static python now exits with success when Perceptron does not converge on
|       train.
| 
| M	testsuite/python/classifier.py
|  
* commit 9724667353a0636a20c9d4c1617eaed87d947378
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jun 24 16:52:13 2008 +0000
| 
|     testsuite:
|     - Implemented testing for clustering. Hierarchical seems to have a similar
|       problem like LibSVM_OneClass in classifier wrt dimensions in results.
| 
| M	testsuite/python/classifier.py
| M	testsuite/python/clustering.py
| M	testsuite/python/util.py
|  
* commit b67c085d63dc1364b85a2f0034a04ed9b3308ad2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 24 09:57:57 2008 +0000
| 
|     fix rename to ShortRealFeatures
| 
| M	src/features/ShortRealFeatures.i
| M	src/features/SimpleFeatures.i
|  
* commit 7dbe6eda3756a59380224d5102917d0b5642c8bb
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jun 24 01:48:14 2008 +0000
| 
|     testsuite:
|     - Created testsuite for static python, only classifier works to a certain
|       extent, though.
| 
| A	testsuite/python/classifier.py
| A	testsuite/python/clustering.py
| A	testsuite/python/distance.py
| A	testsuite/python/distribution.py
| A	testsuite/python/kernel.py
| D	testsuite/python/m_print.py
| A	testsuite/python/preproc.py
| D	testsuite/python/read_mfile.py
| A	testsuite/python/regression.py
| D	testsuite/python/run.sh
| D	testsuite/python/test.py
| M	testsuite/python/test_all.sh
| D	testsuite/python/test_kernels.py
| A	testsuite/python/test_one.py
| D	testsuite/python/test_python
| A	testsuite/python/test_svm_kernel_multiple.py
| A	testsuite/python/util.py
|  
* commit 0571740a0c65a7f84436f79f8fd115f28d3170ea
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jun 24 00:26:07 2008 +0000
| 
|     interface:
|     - Set default value in static interface for max_mismatch in
|       WeightedDegreePositionString from 1 to 0 (as in the class' constructor)
| 
| M	src/interface/SGInterface.cpp
|  
* commit ae7484a41e3294540ca097cc80333b982dece5db
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 23 20:17:51 2008 +0000
| 
|     fix compilation and warnings caused by my previous commit
| 
| M	src/kernel/GaussianShortRealKernel.cpp
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
|  
* commit 2d9cadfffbb3426558f543429487adf65795fe6d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 23 20:00:21 2008 +0000
| 
|     add gaussian kernel for shortreal features
| 
| M	src/features/Features.i
| A	src/kernel/GaussianShortRealKernel.cpp
| A	src/kernel/GaussianShortRealKernel.h
| A	src/kernel/GaussianShortRealKernel.i
| M	src/kernel/Kernel.i
|  
* commit dfc79e758c089f2d727708c52d94472f06052bff
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jun 23 19:46:18 2008 +0000
| 
|     interface:
|     - Added command init_random to static interfaces.
| 
| M	src/guilib/GUICommands.h
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit dd181b658152a349715933a9bb58e6e581b97c75
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jun 21 07:31:12 2008 +0000
| 
|     moving the oligokernel in place - currently only formatting changes.. still way to go before it is working in sg
| 
| A	src/kernel/OligoKernel.cpp
| A	src/kernel/OligoKernel.h
| M	src/lib/Signal.cpp
| M	src/preproc/NormOne.cpp
|  
* commit 0a8844b75522a26e85d668c2959f1e0c51704b2b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 20 16:16:24 2008 +0000
| 
|     remove white borders in multiple svms
| 
| M	examples/python-modular/graphical/multiple_smvs.py
|  
* commit fc86ae0d5239fc82f987252b613ae7e36c693e5f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 20 08:30:28 2008 +0000
| 
|     - document methods in regression/*
|     - update doxyfile to not show methods from inherited classes (its is becoming messy+confusing) and define USE_SVMLIGHT and HAVE_LAPACK/ATLAS to also see these methods documented
| 
| M	doc/Doxyfile
| M	src/NEWS
| M	src/regression/KRR.h
| M	src/regression/svr/LibSVR.h
| M	src/regression/svr/SVR_light.h
|  
* commit a96927e68571d0766588f0ca04cb5644b9bc6375
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 19 21:49:10 2008 +0000
| 
|     document preprocessors
| 
| M	src/NEWS
| M	src/preproc/LogPlusOne.h
| M	src/preproc/NormDerivativeLem3.h
| M	src/preproc/NormOne.cpp
| M	src/preproc/NormOne.h
| M	src/preproc/PCACut.cpp
| M	src/preproc/PCACut.h
| M	src/preproc/PreProc.h
| M	src/preproc/PruneVarSubMean.h
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SortUlongString.h
| M	src/preproc/SortWord.h
| M	src/preproc/SortWordString.h
| M	src/preproc/SparsePreProc.h
| M	src/preproc/StringPreProc.h
|  
* commit 2a68f8a911ef9404b816aa7f3cade3bd3788df51
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 19 09:02:05 2008 +0000
| 
|     document items in base/
| 
| M	src/base/Parallel.h
| M	src/base/SGObject.h
| M	src/base/Version.h
| M	src/lib/Signal.h
|  
* commit 10e9a7750ab10b3d4a0352ce5dd975d8ddca3834
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 19 08:48:40 2008 +0000
| 
|     document classes in lib/
| 
| M	src/evaluation/PerformanceMeasures.h
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/lib/Cache.h
| M	src/lib/Cplex.h
| M	src/lib/DynamicArray.h
| M	src/lib/File.h
| M	src/lib/List.h
| M	src/lib/ShogunException.h
| M	src/lib/Signal.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.h
| M	src/lib/Trie.h
| M	src/lib/io.h
|  
* commit dbf5baec359d2e090bc45592e2233b6945830a19
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 19 06:20:40 2008 +0000
| 
|     remove accidental unconditional active constraint counter increase
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit b956943a955695fe0689d64d2290c1e613f73bd1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 18 22:49:20 2008 +0000
| 
|     looks like there is some problem in the heuristic?
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit b4952fa8af6b7bac97ff53cbcdd060afb7e0b1c3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 18 22:31:47 2008 +0000
| 
|     hopefully fix signal handling:
|     - SVM* / WDKernel* erranously called CSignal::clear() keeping the signal handler active
|     - if a command returned with an error, the signal handler was still set, fix this by removing the signal handler in shogun exception
|     - only use printf in SG_ERROR etc as we are throwing an exception anyway. note that for modular interfaces we need to call CSignal::set_handler(); for all commands that can be expected to run a bit longer
| 
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/interface/OctaveInterface.cpp
| M	src/interface/PythonInterface.cpp
| M	src/interface/RInterface.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/lib/ShogunException.cpp
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/io.cpp
|  
* commit 7fc8ac17d95f2507f82baf03d9fb334c10ae67ca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 18 21:33:55 2008 +0000
| 
|     also implement two/one norm mkl for linadd
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit ab41b76575b437615c8d7b9b8f6e872c0839606a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 17 22:08:12 2008 +0000
| 
|     fix index
| 
| M	src/interface/RInterface.cpp
|  
* commit c8e6a46ee35638bfdc551565bf01e158111cefe0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 17 21:29:38 2008 +0000
| 
|     attempt to fix corruption
| 
| M	src/interface/RInterface.cpp
|  
* commit 00d866ca1e47483a1f9dd6cff2c409ccbfbb99a2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 17 20:31:31 2008 +0000
| 
|     potentially fix 1 norm mkl bug
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit ccf5065f06b9d2e60776c35fcf5d3d4b834e13d4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 17 09:46:55 2008 +0000
| 
|     merge jonas' changes back to trunk
| 
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	src/guilib/GUICommands.h
| M	src/guilib/GUIStructure.cpp
| M	src/guilib/GUIStructure.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit be4b5c7abf6a13283c93b89676b5ffff815f2888
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 16 11:14:58 2008 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 5d950700a3239aedfbce8a1b7788d5d4f4bb3f25
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 16 07:09:13 2008 +0000
| 
|     update news
| 
| M	src/NEWS
|  
* commit 30379df3defdf11154ea1806bf171dad252aa1b2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 16 06:47:12 2008 +0000
| 
|     erase the created file
| 
| M	examples/python-modular/read_svmlight_format.py
|  
* commit f3c2cfdf16f7f45fe2f6669534682df9c0835084
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 15 18:22:43 2008 +0000
| 
|     fix path for octave modular if
| 
| M	src/Makefile
|  
* commit 5d1281e0306adc0b345394d5124911a94f60a59b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 15 14:26:57 2008 +0000
| 
|     we don't have any r-doc/vignette or the like
| 
| M	src/Makefile
|  
* commit 5408de0617203f218c5aae9c4effb389e4f9f7e5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 15 14:20:14 2008 +0000
| 
|     don't make examples executable
| 
| M	src/Makefile
|  
* commit 20fd79607dd1716ffbd6adbce7260936f3033f2a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 15 07:25:23 2008 +0000
| 
|     - also set paths for make reference.
|     - make prepare-release doesn't require root access anymore but does testing in /tmp/
| 
| M	Makefile
| M	doc/pages/StaticPythonInterface.mainpage
| M	src/Makefile
|  
* commit fd780600d1f3f825b0082a6b50c5a32a2dd341a8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 15 07:13:53 2008 +0000
| 
|     to run tests now do
|     make
|     make install DESTDIR=/tmp/
|     make tests DESTDIR=/tmp/
|     
|     (with DESTDIR optional :-)
| 
| M	examples/cmdline/check.sh
| M	examples/matlab_and_octave/check.sh
| M	src/Makefile
|  
* commit 3351c5935f8682e42e2cf86a145a13aff524409e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jun 14 13:56:04 2008 +0000
| 
|     - implement 2-norm MKL for non-linadd kernels and add example of how it works in mkl_classify_christmas_star
|     - instead of creating a symlink set octave path to current src dir. this all needs further thinking, maybe it is a good idea to have a general policy like:
|     
|     1. compile (make)
|     2. install (make install)
|     3. test (make tests)
|     
|     thus the install path has to be set in environment variables as the path to shogun:
|     cmdline -> PATH=...
|     octave -> octave -p ...
|     R -> R_PATH==...
|     matlab -> doesn't support this
|     python -> PYTHONPATH=...
|     
|     ... is $DESTDIR/$PYDIR etc
| 
| M	examples/matlab_and_octave/check.sh
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/interface/SGInterface.cpp
|  
* commit 922f3f8a882ed3500789b4957b7f1db44ccebc06
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 09:46:00 2008 +0000
| 
|     fix update-webpage target
| 
| M	Makefile
|  
* commit bf75c7660a8b0a72d77a036b27f06a287691f8bd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 09:34:12 2008 +0000
| 
|     Preparing for new Release shogun_0.6.3
| 
| M	doc/Doxyfile
|  
* commit a97631bf15018ca041c493da171445d4357af7c9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 09:06:15 2008 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 286db84f14d512c463fa062eaec0a1f6faf39099
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 09:03:07 2008 +0000
| 
|     R tests don't run yet, fix stupid error for WDS 3 kernel
| 
| M	src/interface/SGInterface.cpp
| M	testsuite/r-modular/test_all.sh
|  
* commit 854528740d8cac58010534f4201932cb41fdc683
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 08:51:53 2008 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit ae00a0b415a5e477bec066be06c83d5ef22dcc7e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 08:47:10 2008 +0000
| 
|     R modular examples need to load shogun via library(shogun) now
| 
| M	examples/r-modular/all_classifier.R
| M	examples/r-modular/all_clustering.R
| M	examples/r-modular/all_distance.R
| M	examples/r-modular/all_distribution.R
| M	examples/r-modular/all_kernels.R
| M	examples/r-modular/all_preproc.R
| M	examples/r-modular/all_regression.R
| M	examples/r-modular/first_shot.R
| M	examples/r-modular/libsvm.R
|  
* commit a4550d47b4a50c961624241374cf7d064f6fa9b4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jun 13 08:46:57 2008 +0000
| 
|     testsuite:
|     - Updated data file for fixed GeodesicMetric.
| 
| M	testsuite/data/distance/GeodesicMetric.m
|  
* commit 4b717708e99adafd185ea87379024147abec5745
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 08:37:37 2008 +0000
| 
|     run R tests with R_PATH set and trap division by zero and acos input outside [-1,+1] range
| 
| M	src/Makefile
| M	src/distance/GeodesicMetric.cpp
|  
* commit 489a5e7fd8c9bf74f378d7a181367737129a5f7c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 07:48:22 2008 +0000
| 
|     run things releative to examples/<if>/ directory not any longer relative to src/
| 
| M	examples/matlab_and_octave/check.sh
| M	examples/octave-modular/check.sh
|  
* commit fa42c4678b75d25c58bcd0c62981374d0c8e289a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 07:45:35 2008 +0000
| 
|     updated reference documentation
| 
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
|  
* commit 7a7ca8bf4f31247686a3b21b0bf6742a288b73bc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 07:19:56 2008 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 17313560cf711165df269c9850980a2caa93350b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jun 13 07:10:10 2008 +0000
| 
|     Add Ocas changes to News.
| 
| M	src/NEWS
|  
* commit 70fe656fbf4c4f346051f466d28cc3cdc554cc07
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 07:09:43 2008 +0000
| 
|     move structure commands to separate group
| 
| M	src/interface/SGInterface.cpp
|  
* commit 5dc03cbc46731e7f2b1594e7957b94892dc2a86f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jun 13 07:06:13 2008 +0000
| 
|     classifier:
|     - Transformed SG_SINFO into SG_ABS_PROGRESS in Ocas.
| 
| M	src/classifier/svm/libocas.cpp
| M	src/classifier/svm/qpssvmlib.cpp
|  
* commit 1ee24dd3e45d09653ccbb1c02443b004fb30853a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 07:00:41 2008 +0000
| 
|     merge changes from structure branch
| 
| M	src/NEWS
| M	src/guilib/GUIStructure.h
| M	src/interface/SGInterface.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/Plif.cpp
|  
* commit d52e3b9230b153701577d7d6159d5472ac2eb6f3
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jun 12 18:25:50 2008 +0000
| 
|     classifier:
|     - Made Ocas less verbose, actually modifying the way it prints out error
|       messages.
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/libocas.cpp
| M	src/classifier/svm/libocas.h
| M	src/classifier/svm/qpssvmlib.cpp
| M	src/classifier/svm/qpssvmlib.h
|  
* commit 500520030a9b7c8df03ffabb9b7c357c9c5de28f
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Thu Jun 12 10:37:20 2008 +0000
| 
|     -changed distance function to arcos( x*y/sqrt( (x*x) * (y*y) ) )
|     -distance can handle data, which has not be normalized
| 
| M	src/distance/GeodesicMetric.cpp
|  
* commit 357abe0b49436a4bf6505e06602535ab1859c709
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 12 10:32:16 2008 +0000
| 
|     -refresh+resize kernel cache after we actually erease lhs or rhs
|     -fix a bug+warning in octave interface when setting strings
| 
| M	src/NEWS
| M	src/interface/OctaveInterface.cpp
| M	src/kernel/Kernel.cpp
|  
* commit 243fe4f1987843e5ce6670a8e60404f347332cd8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jun 12 02:29:06 2008 +0000
| 
|     testsuite:
|     - Added a test script to run LibSVM multiple times.
| 
| A	testsuite/python-modular/test_svm_kernel_multiple.py
|  
* commit 298ab056953d260f0845fb7a9b9c1963ceecf6f3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 23:49:19 2008 +0000
| 
|     minor code cleanup
| 
| M	src/kernel/KernelMachine.cpp
|  
* commit ccba64079fc0cb2ce557170af51e5495a27e2ad9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 19:02:28 2008 +0000
| 
|     include test and doc for cmdline interface
| 
| M	Makefile
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	src/Makefile
|  
* commit e690e133b7624e914767b3c647fd436ad61a7912
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 18:51:18 2008 +0000
| 
|     remove data from doxy path
| 
| M	doc/Doxyfile
|  
* commit 3373aa0ef86214f1aa6df91ca2f4eb9407ad3522
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jun 11 17:50:16 2008 +0000
| 
|     documentation:
|     - Fixed some doxygen warnings.
| 
| M	src/features/StringFeatures.h
| M	src/kernel/Kernel.h
| M	src/kernel/PyramidChi2.h
| M	src/lib/File.h
| M	src/structure/DynProg.h
| M	src/structure/Plif.h
|  
* commit a595c2c1b878df621482f69ffc34dcc59a6a79f7
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jun 11 17:02:19 2008 +0000
| 
|     - Slightly modified NEWS
|     - updated svn:ignores in various places.
| 
| M	src/NEWS
|  
* commit 98342f0767e47df7c16b59b15ce88c916c86f383
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 16:52:20 2008 +0000
| 
|     add a build test target and clean up things
| 
| M	Makefile
|  
* commit 59c54fae228340fe48382565622869afda5bd6fd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 16:44:17 2008 +0000
| 
|     updated reference documentation
| 
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
|  
* commit 6030837ce39c4e1fb0e5e5dd07ef6ae951c26107
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 16:18:38 2008 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
| M	src/Makefile
| M	src/NEWS
| M	src/interface/SGInterface.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit f50454c27e412dddc8af9be312eb47216f894b6a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 14:47:27 2008 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
| M	src/Makefile
| M	src/NEWS
|  
* commit 0d8d589ccc563639587bf549e52e6a616dab2808
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 13:50:30 2008 +0000
| 
|     run make install as root (via sudo)
| 
| M	Makefile
|  
* commit 864d2b2502d408d4c8fe4a5e08a78dc7f7b386b8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 13:38:22 2008 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 6c72ceaf17a29570df91636fb8993a533fdf02e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 13:28:44 2008 +0000
| 
|     remove R package creation - we do this natively via make && make install now
| 
| M	Makefile
|  
* commit 7031818bb20d4d645a829f88d0f75eab34d9bda1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 13:03:56 2008 +0000
| 
|     fix a couple of crashers due to uninited tries by making sure tables that are cleaned up on cleanup() are inited on init() - this is yet another side effect of correctly removing lhs/rhs and calling kernel cleanup()
| 
| M	src/interface/SGInterface.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/lib/Trie.h
|  
* commit 8a0ebe49fad60be5e0472f5002159e8f709be285
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 10:42:29 2008 +0000
| 
|     - add a function remove_lhs_and_rhs() which simply calls remove_rhs() and remove_lhs() in the right order (recall that the case lhs==rhs is valid and currently needs extra treatment)
|     - add assertions for WDS kernel 2/3
| 
| M	src/interface/SGInterface.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
|  
* commit f19bf81c2583c25243780879fc9c301d0e03c624
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jun 11 08:25:06 2008 +0000
| 
|     kernel/features:
|     - Previous method to check for vector lengths was wrong.
| 
| M	src/features/StringFeatures.h
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit 971fd67ee1d152326ec65ab9cf212e07668dd55a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jun 11 07:52:39 2008 +0000
| 
|     kernel:
|     - Possibly fixed an issue with regression and kernel cache.
| 
| M	src/kernel/Kernel.cpp
|  
* commit 46d68498e345752fbe1308ce68e3f4d14675ae71
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jun 10 21:01:55 2008 +0000
| 
|     kernel/features:
|     - Check that all vectors have the same length when new features are set for
|       WeightedDegreeString kernel.
| 
| M	src/features/StringFeatures.h
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit 94fbeea362cbfa909aa62d742b21e8646ce5ee30
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 10 12:25:17 2008 +0000
| 
|     try to get nd-array support also for python and octave (dummy for cmdline and R) + a couple of compile fixes
| 
| M	src/guilib/GUIStructure.cpp
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/lib/Mathematics.h
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit 248e2724484a000eec47a0c1c0ae97e1507b19ce
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 10 08:30:03 2008 +0000
| 
|     fix compile warnings, logical and mismatch
| 
| M	src/structure/DynProg.cpp
|    
*   commit 7cf61105796374673a88d87c68463aa342639fd2
|\  Merge: efddcbb faec6fb
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 10 08:18:33 2008 +0000
| | 
| |     merge jonas' structure changes back to svn-trunk
| |   
| * commit faec6fb1f53d3619283012cae63dd09621ecfa6f
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Thu Jun 5 08:47:26 2008 +0000
| | 
| |     -- som debug-code removed
| | 
| | M	src/guilib/GUIStructure.cpp
| | M	src/guilib/GUIStructure.h
| | M	src/interface/SGInterface.cpp
| | M	src/structure/DynProg.cpp
| | M	src/structure/DynProg.h
| |   
| * commit edc62205107a075ce04272f807ae7b54820acdac
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Wed Jun 4 12:04:22 2008 +0000
| | 
| |     -- viterbi decoding seems to work now
| |     -- still some debug-code left
| |     -- calculation of the derivative not yet implemented
| | 
| | M	src/guilib/GUIStructure.cpp
| | M	src/guilib/GUIStructure.h
| | M	src/interface/SGInterface.cpp
| | M	src/structure/DynProg.cpp
| |   
| * commit 455a6368cdc75cb3e40092345a62c72260fda92a
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Mon Jun 2 10:04:19 2008 +0000
| | 
| |      still some bugs there
| | 
| | M	src/interface/SGInterface.cpp
| |   
| * commit f08be30d0779971cf72739c705489588685af17c
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Mon Jun 2 09:26:29 2008 +0000
| | 
| |      still some bugs there
| | 
| | M	src/guilib/GUICommands.h
| | M	src/guilib/GUIStructure.cpp
| | M	src/guilib/GUIStructure.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| | M	src/structure/DynProg.cpp
| | M	src/structure/DynProg.h
| | M	src/structure/Plif.h
| |   
| * commit 99cc6e5d7ec253c36416b6739cd986b44be04bab
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Thu May 29 09:22:34 2008 +0000
| | 
| |     -- new function compute_plif_matrix added that
| |        generates the plif_matrix from transition_pointers
| |        and the penalty array (loaded from ui_structure)
| |     -- plif_matrix is stored in ui_structure
| | 
| | M	src/guilib/GUICommands.h
| | M	src/guilib/GUIStructure.cpp
| | M	src/guilib/GUIStructure.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| |   
| * commit 51a885bccc102c200872fc1dd292da66ccad5ccd
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 29 07:03:11 2008 +0000
| | 
| |     add ND-array support (for matlab only currently)
| | 
| | M	src/guilib/GUIStructure.cpp
| | M	src/guilib/GUIStructure.h
| | M	src/interface/MatlabInterface.cpp
| | M	src/interface/MatlabInterface.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| | M	src/structure/Plif.h
| |   
| * commit a0fa7c8d4e59025e06634bef79da4ef3643e2997
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue May 27 15:03:34 2008 +0000
| | 
| |     -- new function for precomputing content features is now implemented, but not yet tested
| | 
| | M	src/guilib/GUICommands.h
| | M	src/guilib/GUIStructure.cpp
| | M	src/guilib/GUIStructure.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| |   
| * commit 420def98996b893019f5a829906644042042edd0
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue May 27 13:41:14 2008 +0000
| | 
| |     set_plif_struct and get_plif_struct are now working and seem to be correct (input and output are equal)
| | 
| | M	src/guilib/GUIStructure.cpp
| | M	src/guilib/GUIStructure.h
| | M	src/interface/MatlabInterface.cpp
| | M	src/interface/SGInterface.cpp
| | M	src/structure/DynProg.cpp
| |   
| * commit f6ec6260d8fbee566515aba2f172b566c606b561
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue May 27 09:47:17 2008 +0000
| | 
| |     still not working, but now at least compiling
| | 
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| | M	src/structure/DynProg.cpp
| | M	src/structure/DynProg.h
| | M	src/structure/Plif.cpp
| | M	src/structure/Plif.h
| | M	src/structure/PlifArray.cpp
| | M	src/structure/PlifArray.h
| | M	src/structure/PlifBase.h
| | M	src/structure/Structure.i
| |   
| * commit 3e3e585875ac96d0b919e41c8a7fb8ec77de4086
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Wed May 21 12:57:56 2008 +0000
| | 
| |     -- add get_plif_struct function to SGInterface
| | 
| | M	src/guilib/GUICommands.h
| | M	src/guilib/GUIStructure.cpp
| | M	src/guilib/GUIStructure.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| |   
| * commit 825cd6c699cc676aff9a2483f86084ad3e987f32
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 20 23:55:26 2008 +0000
| | 
| |     some progress on separating out structural stuff
| | 
| | A	src/guilib/GUIStructure.cpp
| | A	src/guilib/GUIStructure.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| |   
| * commit 1c612c6bcb853b4f69ea08e3cb677fcdcdb34bea
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue May 20 18:40:47 2008 +0000
| | 
| |     -- it compiles now, but nothing more
| | 
| | M	src/interface/SGInterface.cpp
| |   
| * commit cf255874d5c10669fa9944e1682111288791da97
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 20 18:22:25 2008 +0000
| | 
| |     lots of structure fixes
| | 
| | M	src/features/StringFeatures.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| |   
| * commit d2829a6829e90fc1db350f09621b660576105bdc
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 20 17:46:29 2008 +0000
| | 
| |     fix
| | 
| | M	src/interface/SGInterface.h
| |   
| * commit 3575852258fa4f7227db6dc7d5f92ab5ad787d61
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue May 20 17:41:40 2008 +0000
| | 
| |     -- transfered the functionality from old best_path_trans interface to the new
| |        one, but everything not yet working
| | 
| | M	src/interface/SGInterface.cpp
| |   
| * commit ca6a53fd7ccbb760bb1d236c8831181de3539113
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue May 20 15:42:32 2008 +0000
| | 
| |     -- firts bit of code for set_plif_struct
| |        -> construct a CPlif array
| |     
| |     -- starting to implement interface for best_path_trans
| | 
| | M	src/guilib/GUICommands.h
| | M	src/interface/SGInterface.cpp
| |   
* | commit efddcbb314b3e0978fa332f93100bbbcaec99a11
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 10 08:01:50 2008 +0000
| | 
| |     fix a couple of gcc-4.3 compiler warnings
| | 
| | M	src/lib/Mathematics.h
| | M	src/structure/DynProg.cpp
| |   
* | commit c88edd678beb8eedcf15a41b52f9c74e89f05a02
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 10 08:00:22 2008 +0000
| | 
| |     speed up check_commwordkernel_memleak and add a file for read_svmlight_format to actually do something :)
| | 
| | A	examples/data/train_sparsereal.light
| | M	examples/python-modular/check_commwordkernel_memleak.py
| | M	examples/python-modular/read_svmlight_format.py
| |   
* | commit a1b8179ae0016b1edeedd9668ee6cf45b9d36ca4
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 10 07:35:43 2008 +0000
| | 
| |     only svmlight/svrlight do MKL
| | 
| | M	examples/r/mkl_classify_christmas_star.R
| | M	examples/r/mkl_regression_3sine_waves.R
| | M	examples/r/mkl_regression_sine.R
| |   
* | commit b31f9143009b47ca4d67ac332c9cd3d9ae68d0ee
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 10 07:31:46 2008 +0000
| | 
| |     speed up wds kernel example and create symlink to sg.oct if sg is not found in path
| | 
| | M	examples/matlab_and_octave/check.sh
| | M	examples/matlab_and_octave/wds_kernel.m
| |   
* | commit c89af005371e5c1913a78b16386f087687415ea3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 10 07:19:52 2008 +0000
| | 
| |     unset signal handler as soon as we enter handle() to fix an issue when ctrl+c was pressed more than once in a row
| | 
| | M	src/interface/CmdLineInterface.cpp
| | M	src/interface/CmdLineInterface.h
| | M	src/lib/Mathematics.h
| | M	src/lib/Signal.cpp
| |   
* | commit d48bbf0404836f79081420bad2784b774458e636
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 10 06:40:59 2008 +0000
| | 
| |     remove double error printing
| | 
| | M	src/interface/OctaveInterface.cpp
| | M	src/interface/PythonInterface.cpp
| | M	src/interface/RInterface.cpp
| |   
* | commit be261603d0f300b0e2d6fc0d4b890261de6f61c6
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 9 22:56:21 2008 +0000
| | 
| |     port mkl examples to R
| | 
| | A	examples/r/mkl_classify_christmas_star.R
| | D	examples/r/mkl_classify_christmas_star.m
| | A	examples/r/mkl_regression_3sine_waves.R
| | D	examples/r/mkl_regression_3sine_waves.m
| | A	examples/r/mkl_regression_sine.R
| | D	examples/r/mkl_regression_sine.m
| |   
* | commit 22480633ab0e6155d4b6e0998a07002d7965f819
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Mon Jun 9 17:02:41 2008 +0000
| | 
| |     testsuite:
| |     - Added linadd and batch computation to SVMs using WD/WDS kernels.
| | 
| | A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| | M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| | A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True_True.m
| | M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| | A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| | M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| | M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| | M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_023_1_3_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_023_1_3_DNA_True_True.m
| | M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_15_1_3_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_15_1_3_DNA_True_True.m
| | M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_30_1_3_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_30_1_3_DNA_True_True.m
| | A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| | A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| | M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| | A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True_True.m
| | M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| | A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| | M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| | A	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| | M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| | M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA_True_True.m
| | M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA_True_True.m
| | M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA_True_True.m
| | M	testsuite/data/classifier/SubGradientSVM_05_023_1_1e-05_False.m
| | M	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05_False.m
| | M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001_False.m
| | M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001_False.m
| | M	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05_False.m
| | M	testsuite/data/kernel/Combined_3_10_60_LinearString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| | M	testsuite/generator/classifier.py
| | M	testsuite/python-modular/classifier.py
| |   
* | commit 10c8766a1c2278b84a411b0b94f714534472d742
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 9 16:02:40 2008 +0000
| | 
| |     fix error msg when command is mistyped
| | 
| | M	src/interface/SGInterface.cpp
| |   
* | commit 57865e418f699a619bee95e26c843b6649a63b2d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 9 11:05:13 2008 +0000
| | 
| |     - add a make reference to automagically create pages/Static*Interface.mainpage command references
| |     - add option to disable syntax hilighting
| |     - attempt to compile when atlas takes over lapack functions completely (suse build problems...)
| | 
| | M	Makefile
| | D	doc/data/help_all.txt
| | A	doc/pages/StaticCommandLineInterface.mainpage
| | M	doc/pages/StaticInterfaces.mainpage
| | A	doc/pages/StaticOctaveInterface.mainpage
| | A	doc/pages/StaticPythonInterface.mainpage
| | A	doc/pages/StaticRInterface.mainpage
| | M	examples/matlab_and_octave/check.sh
| | A	examples/r/mkl_classify_christmas_star.m
| | D	examples/r/mkl_lin_sine_mix.R
| | A	examples/r/mkl_regression_3sine_waves.m
| | A	examples/r/mkl_regression_sine.m
| | D	examples/r/mkl_sine_regression.R
| | D	examples/r/x-max_class.R
| | M	src/Makefile
| | M	src/configure
| | M	src/guilib/GUICommands.h
| | M	src/interface/CmdLineInterface.cpp
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| | A	src/interface/SyntaxHighLight.h
| | M	src/lib/io.cpp
| |   
* | commit aa2356bb693122051be78804be6de283015bca5c
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Mon Jun 9 05:41:40 2008 +0000
| | 
| |     documentation:
| |     - Added a list of all help commands to the static interfaces' mainpage.
| | 
| | M	doc/Doxyfile
| | A	doc/data/help_all.txt
| | M	doc/pages/StaticInterfaces.mainpage
| |   
* | commit 1eb1f658f054ae8b2ed47666babb394be21678ed
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Mon Jun 9 05:40:48 2008 +0000
| | 
| |     documentation:
| |     - Added help command 'all' to give a brief listing of all commands.
| | 
| | M	src/interface/SGInterface.cpp
| |   
* | commit 08dffad54e0a7e9e4c11ea753ee25f66327a5769
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Mon Jun 9 04:28:43 2008 +0000
| | 
| |     testsuite:
| |     - Added degree 1 to WD and WDS kernels.
| | 
| | A	testsuite/data/kernel/WeightedDegreePositionString_60_1_DNA.m
| | A	testsuite/data/kernel/WeightedDegreeString_60_1_DNA.m
| | M	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| | M	testsuite/generator/config.py
| | M	testsuite/generator/kernel.py
| |   
* | commit c37903651912c66fd7880fd18e06def312b200ce
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri Jun 6 23:22:15 2008 +0000
| | 
| |     examples/interface:
| |     - Interface cmdline now can read cube matrices.
| | 
| | M	examples/cmdline/all_distribution.sg
| | M	src/interface/CmdLineInterface.cpp
| |   
* | commit dc18832ab045312b2f69ea907d45db25e5e23936
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri Jun 6 21:34:13 2008 +0000
| | 
| |     examples:
| |     - Renamed oneclass to twoclass labels.
| | 
| | M	examples/cmdline/all_classifier.sg
| | M	examples/cmdline/all_regression.sg
| | D	examples/data/label_train_oneclass.dat
| | A	examples/data/label_train_twoclass.dat
| | M	examples/matlab_and_octave/all_classifier.m
| | M	examples/matlab_and_octave/all_regression.m
| | M	examples/octave-modular/all_classifier.m
| | M	examples/octave-modular/all_regression.m
| | M	examples/python-modular/all_classifier.py
| | M	examples/python-modular/all_regression.py
| | M	examples/python/all_classifier.py
| | M	examples/python/all_regression.py
| | M	examples/r-modular/all_classifier.R
| | M	examples/r-modular/all_regression.R
| | M	examples/r/all_classifier.R
| | M	examples/r/all_regression.R
| |   
* | commit 0dd1cef5130b08b80cc1f4357a548723b2454a5c
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri Jun 6 08:15:28 2008 +0000
| | 
| |     examples:
| |     - Corrected erroneous data file and enabled sparse linear classifiers.
| | 
| | M	examples/cmdline/all_classifier.sg
| | M	examples/data/fm_train_sparsereal.dat
| |   
* | commit bcf4cac8d387422bda9abdccf40050e50b275571
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri Jun 6 01:26:57 2008 +0000
| | 
| |     examples:
| |     - Enabled examples for sparse real features with new data set. Something makes
| |       shogun segfault within classifiers, though.
| | 
| | M	examples/cmdline/all_classifier.sg
| | M	examples/cmdline/all_kernels.sg
| | D	examples/data/fm_real_sparse.dat
| | A	examples/data/fm_test_sparsereal.dat
| | A	examples/data/fm_train_sparsereal.dat
| | M	src/interface/CmdLineInterface.cpp
| |   
* | commit 59b79dfa19bfe125e42f95990bff4b90b7be55e7
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Thu Jun 5 21:02:33 2008 +0000
| | 
| |     examples
| |     - Adjusted examples for cmdline interface to use print command and disabled
| |       elements which are not working yet.
| | 
| | M	examples/cmdline/all_classifier.sg
| | M	examples/cmdline/all_clustering.sg
| | M	examples/cmdline/all_distance.sg
| | M	examples/cmdline/all_distribution.sg
| | M	examples/cmdline/all_kernels.sg
| | M	examples/cmdline/all_preproc.sg
| | M	examples/cmdline/all_regression.sg
| |   
* | commit 278933ce4fc9c420e9660cee1ee0f51c6cdc999f
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Thu Jun 5 20:40:18 2008 +0000
| | 
| |     interface
| |     - Cmdline interface now tranposes matrices read from a file.
| | 
| | M	src/guilib/GUIClassifier.cpp
| | M	src/interface/CmdLineInterface.cpp
| | M	src/interface/CmdLineInterface.h
| |   
* | commit 8254d28e82fbf521dbf4e2e498c7e5b38d22afe9
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Thu Jun 5 20:37:13 2008 +0000
| | 
| |     interface:
| |     - Added command print to print messages via SG_PRINT.
| | 
| | M	src/guilib/GUICommands.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| |   
* | commit 9a01fe487fa35de8dfb75ce138f57feeca378f31
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed Jun 4 23:02:13 2008 +0000
| | 
| |     testsuite:
| |     - Added testfile for cmdline interface previously moved from examples.
| | 
| | A	testsuite/cmdline/test.sg
| |   
* | commit 46aad9dfdf6c10659f17c1b2529adabc091147b0
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed Jun 4 23:01:34 2008 +0000
| | 
| |     examples:
| |     - Added examples for command line interface. Most are unfortunately not
| |       working yet due to braindamage with column/row vectors.
| | 
| | A	examples/cmdline/all_classifier.sg
| | A	examples/cmdline/all_clustering.sg
| | A	examples/cmdline/all_distance.sg
| | A	examples/cmdline/all_distribution.sg
| | A	examples/cmdline/all_kernels.sg
| | A	examples/cmdline/all_preproc.sg
| | A	examples/cmdline/all_regression.sg
| | D	examples/cmdline/libsvm.sg
| | D	examples/cmdline/test.sg
| | D	examples/data/fm_real.dat
| | D	examples/data/fm_stringchar_dna.dat
| | D	examples/data/fm_stringchar_dnamatrix.dat
| | D	examples/data/label_test.dat
| | D	examples/data/label_train.dat
| |   
* | commit 3dcd7f33a989fafe33a102129e8c5e29a5e01c8c
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed Jun 4 18:55:04 2008 +0000
| | 
| |     examples:
| |     - Examples for r-modular now use data files (untested, though).
| | 
| | M	examples/r-modular/all_classifier.R
| | M	examples/r-modular/all_clustering.R
| | M	examples/r-modular/all_distance.R
| | M	examples/r-modular/all_distribution.R
| | M	examples/r-modular/all_kernels.R
| | M	examples/r-modular/all_preproc.R
| | M	examples/r-modular/all_regression.R
| | M	examples/r-modular/check.sh
| | M	examples/r/all_distribution.R
| |   
* | commit 5ae31ca3711a69adb89ceadb809c5a94d5485232
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed Jun 4 18:24:24 2008 +0000
| | 
| |     examples:
| |     - Examples for r now use data files (with a bit of cheating for DNA train
| |       labels)
| | 
| | A	examples/data/label_train_dna42.dat
| | M	examples/r/all_classifier.R
| | M	examples/r/all_clustering.R
| | M	examples/r/all_distance.R
| | M	examples/r/all_distribution.R
| | M	examples/r/all_kernels.R
| | M	examples/r/all_preproc.R
| | M	examples/r/all_regression.R
| | M	examples/r/check.sh
| |   
* | commit 549b0ddd7bb7745b0f1ec5da1ea3cf811fc6f07d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 4 15:38:39 2008 +0000
| | 
| |     support cplex11
| | 
| | M	src/configure
| |   
* | commit f0526bd49d887035797acf4201bf6bae95c538b1
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 4 14:44:34 2008 +0000
| | 
| |     at least add an assertion that lhs!=NULL and totdoc>0
| | 
| | M	src/kernel/Kernel.cpp
| |   
* | commit 74e554381e4c009cc5943fe0f5809f5a0dc83a8c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 4 14:43:39 2008 +0000
| | 
| |     clarify that MKL in configure denotes Intel MKL
| | 
| | M	src/configure
| |   
* | commit fba98d103593515355a46016135bc2a8e3521eb9
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed Jun 4 00:54:42 2008 +0000
| | 
| |     examples:
| |     - Applied a cosmetic change to clustering example of octave-modular.
| | 
| | M	examples/octave-modular/all_clustering.m
| |   
* | commit 2cb0c9cbc0246b3dc13074648990e6e494d72485
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed Jun 4 00:28:39 2008 +0000
| | 
| |     examples:
| |     - Corrected inconsistent naming of cube data files.
| | 
| | D	examples/data/fm_cube_test.dat
| | D	examples/data/fm_cube_train.dat
| | A	examples/data/fm_test_cube.dat
| | A	examples/data/fm_train_cube.dat
| | M	examples/python-modular/all_distribution.py
| | M	examples/python-modular/all_kernels.py
| | M	examples/python/all_distribution.py
| |   
* | commit b2d53a2adc0c06d1871c429499948b7898281800
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed Jun 4 00:22:23 2008 +0000
| | 
| |     examples:
| |     - Updated examples for python interface to use cubes from files, the new
| |       tool.load.LoadMatrix and other minor changes.
| | 
| | M	examples/python/all_classifier.py
| | M	examples/python/all_clustering.py
| | M	examples/python/all_distance.py
| | M	examples/python/all_distribution.py
| | M	examples/python/all_kernels.py
| | M	examples/python/all_preproc.py
| | M	examples/python/all_regression.py
| | M	examples/python/tools/load.py
| |   
* | commit 2f857a81597a6f43613a5b556a7162ffec6d478b
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed Jun 4 00:20:53 2008 +0000
| | 
| |     examples:
| |     - Made 'make check_examples' work again for python-modular.
| | 
| | M	examples/python-modular/check.sh
| |   
* | commit c1950b32aeda2cafc7c6b0655904d0a8a3b279a2
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed Jun 4 00:11:23 2008 +0000
| | 
| |     examples:
| |     - Examples for python-modular now use data files.
| | 
| | M	examples/python-modular/all_classifier.py
| | M	examples/python-modular/all_clustering.py
| | M	examples/python-modular/all_distance.py
| | M	examples/python-modular/all_distribution.py
| | M	examples/python-modular/all_kernels.py
| | M	examples/python-modular/all_preproc.py
| | M	examples/python-modular/all_regression.py
| | A	examples/python-modular/tools/__init__.py
| | A	examples/python-modular/tools/load.py
| |   
* | commit d2733cd9ab97e559a29813012daf87ab1a11b103
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed Jun 4 00:10:48 2008 +0000
| | 
| |     examples:
| |     - Added data files for cube representations.
| | 
| | A	examples/data/fm_cube_test.dat
| | A	examples/data/fm_cube_train.dat
| |   
* | commit 8914e2d9c3b0d4aab1287c338b2da232cdea76c5
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Tue Jun 3 20:45:55 2008 +0000
| | 
| |     kernel:
| |     - Fixed an issue with unproperly referenced distance.
| | 
| | M	src/kernel/DistanceKernel.cpp
| |   
* | commit f2bfeede4d47aeab67bfc6d2f540dd48c938fb2e
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Tue Jun 3 20:35:34 2008 +0000
| | 
| |     kernel:
| |     - Fixed an issue about missing features (another problem which needs to be
| |       addressed on this kernel at some time).
| | 
| | M	src/kernel/CustomKernel.cpp
| | M	src/kernel/CustomKernel.h
| |   
* | commit 94c270c544da14c25b07567a1925c166d9855c4e
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Tue Jun 3 00:24:32 2008 +0000
| | 
| |     examples
| |     - Examples now read data from files for interface python.
| | 
| | M	examples/python/all_classifier.py
| | M	examples/python/all_clustering.py
| | M	examples/python/all_distance.py
| | M	examples/python/all_distribution.py
| | M	examples/python/all_kernels.py
| | M	examples/python/all_preproc.py
| | M	examples/python/all_regression.py
| | M	examples/python/check.sh
| | A	examples/python/tools/__init__.py
| | A	examples/python/tools/load.py
| |   
* | commit dcc3afda3ff3d5e07d22a23a76f1a810202ee793
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Tue Jun 3 00:23:44 2008 +0000
| | 
| |     examples:
| |     - Data for word features used different item seperator than other data types.
| | 
| | M	examples/data/fm_test_word.dat
| | M	examples/data/fm_train_word.dat
| |   
* | commit ec52049557f3c3529154ee7a8306c43df818090e
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Tue Jun 3 00:22:45 2008 +0000
| | 
| |     examples:
| |     - Slightly modified octave/octave-modular examples.
| | 
| | M	examples/matlab_and_octave/all_kernels.m
| | M	examples/octave-modular/all_kernels.m
| |   
* | commit 9d7d36cd189b238eaa44bd3dd9a6222f947958a4
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Mon Jun 2 20:43:56 2008 +0000
| | 
| |     examples:
| |     - Added data files for feature matrices of type byte.
| | 
| | A	examples/data/fm_test_byte.dat
| | A	examples/data/fm_train_byte.dat
| |   
* | commit f6df156b703a1433ccfef92bdf550d95a7dffcc5
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Mon Jun 2 20:43:17 2008 +0000
| | 
| |     examples:
| |     - Examples for octave-modular now use files in data/.
| | 
| | M	examples/octave-modular/all_classifier.m
| | M	examples/octave-modular/all_clustering.m
| | M	examples/octave-modular/all_distance.m
| | M	examples/octave-modular/all_distribution.m
| | M	examples/octave-modular/all_kernels.m
| | M	examples/octave-modular/all_preproc.m
| | M	examples/octave-modular/all_regression.m
| | A	examples/octave-modular/tools/load_matrix.m
| |   
* | commit ee6d5599c8edaa6c2057edda3a135fc689ac62ea
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Mon Jun 2 20:42:46 2008 +0000
| | 
| |     examples:
| |     - Little adjustments to examples for static matlab/octave.
| | 
| | M	examples/matlab_and_octave/all_clustering.m
| | M	examples/matlab_and_octave/all_kernels.m
| | M	examples/matlab_and_octave/all_regression.m
| |   
* | commit c97c8dd6b974388952f0285f8eea393f657bb6e5
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Mon Jun 2 20:40:59 2008 +0000
| | 
| |     kernel:
| |     - Fixed a segfault issue on kernel cleanup when lhs == rhs.
| | 
| | M	src/kernel/Kernel.cpp
| |   
* | commit 36c5bfdbc1533ccd3d659d18016273872588ae32
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 2 05:59:24 2008 +0000
| | 
| |     fix example (matrix size incorrect)
| | 
| | M	examples/r/mkl_lin_sine_mix.R
| |   
* | commit 76cc437023c453bb8fd96ca932bea4c72d678ba5
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri May 30 21:09:19 2008 +0000
| | 
| |     examples:
| |     - Improved extra examples for r a bit.
| | 
| | M	examples/r/mkl_lin_sine_mix.R
| | M	examples/r/mkl_sine_regression.R
| | M	examples/r/string_kernel.R
| | M	examples/r/wd_mkl.R
| | M	examples/r/x-max_class.R
| |   
* | commit e7af48d4fe024a5c03e9f09bd482711219f5a213
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri May 30 19:54:22 2008 +0000
| | 
| |     examples/testsuite
| |     - Made 'make tests' run smoother.
| | 
| | M	examples/cmdline/check.sh
| | A	examples/libshogun/Makefile
| | D	examples/libshogun/examples/Makefile
| | D	examples/libshogun/examples/rbf_svm.cpp
| | A	examples/libshogun/rbf_svm.cpp
| | M	examples/matlab_and_octave/check.sh
| | M	examples/octave-modular/check.sh
| | M	examples/python-modular/check.sh
| | M	examples/python/check.sh
| | M	examples/r-modular/check.sh
| | M	examples/r/check.sh
| | A	testsuite/cmdline/test_all.sh
| | A	testsuite/libshogun/test_all.sh
| | A	testsuite/matlab_and_octave/test_all.sh
| | A	testsuite/octave-modular/test_all.sh
| | A	testsuite/python/test_all.sh
| | A	testsuite/r-modular/test_all.sh
| | A	testsuite/r/test_all.sh
| |   
* | commit 3b15544ab77796fae8c9e09befad79928f85c488
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 30 15:50:13 2008 +0000
| | 
| |     call remove_rhs() and remove_lhs() in cleanup()
| | 
| | M	src/kernel/AUCKernel.cpp
| | M	src/kernel/AUCKernel.h
| | M	src/kernel/Chi2Kernel.cpp
| | M	src/kernel/Chi2Kernel.h
| | M	src/kernel/CombinedKernel.cpp
| | M	src/kernel/CommUlongStringKernel.cpp
| | M	src/kernel/CommWordStringKernel.cpp
| | M	src/kernel/ConstKernel.h
| | M	src/kernel/CustomKernel.cpp
| | M	src/kernel/DiagKernel.cpp
| | M	src/kernel/DiagKernel.h
| | M	src/kernel/DistanceKernel.cpp
| | M	src/kernel/DistanceKernel.h
| | M	src/kernel/FixedDegreeStringKernel.cpp
| | M	src/kernel/GaussianKernel.cpp
| | M	src/kernel/GaussianKernel.h
| | M	src/kernel/HistogramWordKernel.cpp
| | M	src/kernel/Kernel.cpp
| | M	src/kernel/Kernel.h
| | M	src/kernel/LinearByteKernel.cpp
| | M	src/kernel/LinearKernel.cpp
| | M	src/kernel/LinearStringKernel.cpp
| | M	src/kernel/LinearWordKernel.cpp
| | M	src/kernel/LocalAlignmentStringKernel.cpp
| | M	src/kernel/LocalityImprovedStringKernel.cpp
| | M	src/kernel/LocalityImprovedStringKernel.h
| | M	src/kernel/MindyGramKernel.cpp
| | M	src/kernel/PolyKernel.cpp
| | M	src/kernel/PolyMatchStringKernel.cpp
| | M	src/kernel/PolyMatchWordKernel.cpp
| | M	src/kernel/PyramidChi2.cpp
| | M	src/kernel/SalzbergWordKernel.cpp
| | M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| | M	src/kernel/SparseGaussianKernel.cpp
| | M	src/kernel/SparseLinearKernel.cpp
| | M	src/kernel/SparsePolyKernel.cpp
| | M	src/kernel/WeightedDegreePositionStringKernel.cpp
| | M	src/kernel/WeightedDegreeStringKernel.cpp
| | M	src/kernel/WordMatchKernel.cpp
| | M	src/kernel/WordMatchKernel.h
| |   
* | commit 65507c00e2bac1b540583673fed73e15a1eac745
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 30 15:14:47 2008 +0000
| | 
| |     colorify outputs
| | 
| | M	src/interface/SGInterface.cpp
| |   
* | commit c74a9891e840bf3750d2b9786dd8bec29ff5b870
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 30 12:15:19 2008 +0000
| | 
| |     add command to enable progress for static interfaces ( progress ON / progress OFF )
| | 
| | M	src/guilib/GUICommands.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| |   
* | commit ca2cb04f78b9661109eabf1d5cbd0a0c0309fb13
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 30 07:53:16 2008 +0000
| | 
| |     update news
| | 
| | M	src/NEWS
| |   
* | commit af0b77f875ed9a3ba9d19b26ddc4af924c69c465
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 30 07:37:02 2008 +0000
| | 
| |     check in forgotten .r-install.sh file and finish make install for r-modular
| | 
| | A	src/.r-install.sh
| | M	src/Makefile
| |   
* | commit e400d302bf1679db0ceaa86c6772f416508ddd1f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 30 01:32:59 2008 +0000
| | 
| |     make install for r-modular half working
| | 
| | M	src/Makefile
| |   
* | commit e586322fd651d7eb875b095a34bf95239fa4d452
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 30 01:06:14 2008 +0000
| | 
| |     get static R interface of shogun to install via make install again
| | 
| | M	src/Makefile
| | M	src/configure
| |   
* | commit 6b45187c30b19c0b6e3efb1c3be313be0dec14d1
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri May 30 00:16:45 2008 +0000
| | 
| |     - Updated README in /.
| | 
| | M	README
| |   
* | commit 450423f0dc05cf77194647b2bbaabec4663777e7
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri May 30 00:13:48 2008 +0000
| | 
| |     examples:
| |     - Somehow the old data/ directory had been forgotten previously.
| | 
| | D	data/fm_real.dat
| | D	data/fm_real_sparse.dat
| | D	data/fm_stringchar_dna.dat
| | D	data/fm_stringchar_dnamatrix.dat
| | D	data/fm_test_real.dat
| | D	data/fm_train_real.dat
| | D	data/label_test.dat
| | D	data/label_train.dat
| |   
* | commit c4f80973c8fef74950c1873001ef87560f8fcb80
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri May 30 00:13:21 2008 +0000
| | 
| |     examples:
| |     - matlab and octave explicit examples now use static data repository.
| | 
| | A	examples/data/fm_test_dna.dat
| | M	examples/data/fm_test_real.dat
| | A	examples/data/fm_test_word.dat
| | A	examples/data/fm_train_dna.dat
| | M	examples/data/fm_train_real.dat
| | A	examples/data/fm_train_word.dat
| | A	examples/data/label_train_dna.dat
| | A	examples/data/label_train_multiclass.dat
| | A	examples/data/label_train_oneclass.dat
| | M	examples/matlab_and_octave/all_classifier.m
| | M	examples/matlab_and_octave/all_clustering.m
| | M	examples/matlab_and_octave/all_distance.m
| | M	examples/matlab_and_octave/all_distribution.m
| | M	examples/matlab_and_octave/all_kernels.m
| | M	examples/matlab_and_octave/all_preproc.m
| | M	examples/matlab_and_octave/all_regression.m
| | A	examples/matlab_and_octave/tools/load_matrix.m
| |   
* | commit b75b3cb4e063b1a442cae37a359358e9aa86e482
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Thu May 29 20:51:49 2008 +0000
| | 
| |     classifier:
| |     - Made Perceptron spit out a warning, instead of info when not converged.
| | 
| | M	src/classifier/Perceptron.cpp
| |   
* | commit 32a2cab4f730b4c9de05757f2588826030da9649
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 29 17:29:37 2008 +0000
| | 
| |     fix a memory leak in set_custom_kernel
| | 
| | M	src/interface/SGInterface.cpp
| |   
* | commit b20ef9d9ed5cfbaa7ffd84c2d429c96870b9f72a
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Thu May 29 07:37:03 2008 +0000
| | 
| |     - Killed r/ (updates to Makefile to follow).
| | 
| | A	examples/r/mkl_lin_sine_mix.R
| | A	examples/r/mkl_sine_regression.R
| | A	examples/r/string_kernel.R
| | A	examples/r/wd_mkl.R
| | A	examples/r/x-max_class.R
| | D	r/Makefile
| | D	r/README.txt
| | D	r/examples/all_classifier.R
| | D	r/examples/all_clustering.R
| | D	r/examples/all_distance.R
| | D	r/examples/all_distribution.R
| | D	r/examples/all_kernels.R
| | D	r/examples/all_preproc.R
| | D	r/examples/all_regression.R
| | D	r/examples/graphical/hmm.R
| | D	r/examples/graphical/svm_classification.R
| | D	r/examples/graphical/svr_regression.R
| | D	r/sg/COPYING
| | D	r/sg/DESCRIPTION
| | D	r/sg/R/shogun.R
| | D	r/sg/R/zzz.R
| | D	r/sg/demo/00Index
| | D	r/sg/demo/mkl_lin_sine_mix.R
| | D	r/sg/demo/mkl_sine_regression.R
| | D	r/sg/demo/string_kernel.R
| | D	r/sg/demo/wd_mkl.R
| | D	r/sg/demo/x-max_class.R
| | D	r/sg/inst/doc/manual.pdf
| | D	r/sg/inst/doc/sg.Rnw
| | D	r/sg/tests/startup.R
| | D	r/testcases/read_mfile.R
| | D	r/testcases/run.sh
| | D	r/testcases/test_R.R
| | D	r/testcases/test_kernels.R
| |   
* | commit b1757962635a0590f81bf57a1de7a35c63d01f3d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 29 06:07:19 2008 +0000
| | 
| |     on clean also rm .RData files
| | 
| | M	src/Makefile
| |   
* | commit f6829ab1343ca6ff43d682e75deb929c661f1321
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 29 06:03:53 2008 +0000
| | 
| |     move forgotton libshogun to examples
| | 
| | A	examples/libshogun/examples/Makefile
| | A	examples/libshogun/examples/rbf_svm.cpp
| | D	libshogun/examples/Makefile
| | D	libshogun/examples/rbf_svm.cpp
| |   
* | commit f382b87f7584f353a719affd0e38814462924a02
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed May 28 20:28:34 2008 +0000
| | 
| |     - Big move of testcases/examples.
| | 
| | D	cmdline/check_examples.sh
| | D	cmdline/examples/data/fm_real.dat
| | D	cmdline/examples/data/fm_real_sparse.dat
| | D	cmdline/examples/data/fm_stringchar_dna.dat
| | D	cmdline/examples/data/fm_stringchar_dnamatrix.dat
| | D	cmdline/examples/data/fm_test_real.dat
| | D	cmdline/examples/data/fm_train_real.dat
| | D	cmdline/examples/data/label_test.dat
| | D	cmdline/examples/data/label_train.dat
| | D	cmdline/examples/libsvm.sg
| | D	cmdline/examples/test.sg
| | A	data/fm_real.dat
| | A	data/fm_real_sparse.dat
| | A	data/fm_stringchar_dna.dat
| | A	data/fm_stringchar_dnamatrix.dat
| | A	data/fm_test_real.dat
| | A	data/fm_train_real.dat
| | A	data/label_test.dat
| | A	data/label_train.dat
| | A	examples/cmdline/check.sh
| | A	examples/cmdline/libsvm.sg
| | A	examples/cmdline/test.sg
| | A	examples/data/fm_real.dat
| | A	examples/data/fm_real_sparse.dat
| | A	examples/data/fm_stringchar_dna.dat
| | A	examples/data/fm_stringchar_dnamatrix.dat
| | A	examples/data/fm_test_real.dat
| | A	examples/data/fm_train_real.dat
| | A	examples/data/label_test.dat
| | A	examples/data/label_train.dat
| | A	examples/matlab
| | A	examples/matlab_and_octave/all_classifier.m
| | A	examples/matlab_and_octave/all_clustering.m
| | A	examples/matlab_and_octave/all_distance.m
| | A	examples/matlab_and_octave/all_distribution.m
| | A	examples/matlab_and_octave/all_kernels.m
| | A	examples/matlab_and_octave/all_preproc.m
| | A	examples/matlab_and_octave/all_regression.m
| | A	examples/matlab_and_octave/check.sh
| | A	examples/matlab_and_octave/graphical/cluster_hierarchical.m
| | A	examples/matlab_and_octave/graphical/cluster_kmeans.m
| | A	examples/matlab_and_octave/graphical/entropy.m
| | A	examples/matlab_and_octave/graphical/hmm.m
| | A	examples/matlab_and_octave/graphical/lda_classification.m
| | A	examples/matlab_and_octave/graphical/local_alignment_kernel.m
| | A	examples/matlab_and_octave/graphical/mkl_pseudo_dna.m
| | A	examples/matlab_and_octave/graphical/spec_interp.m
| | A	examples/matlab_and_octave/graphical/svm_classification.m
| | A	examples/matlab_and_octave/graphical/svm_multiclass.m
| | A	examples/matlab_and_octave/graphical/svr_regression.m
| | A	examples/matlab_and_octave/graphical/test_gnpp_svm.m
| | A	examples/matlab_and_octave/graphical/test_poim_wds.m
| | A	examples/matlab_and_octave/graphical/test_regression.m
| | A	examples/matlab_and_octave/graphical/test_regression_mkl.m
| | A	examples/matlab_and_octave/graphical/test_spec_interp.m
| | A	examples/matlab_and_octave/graphical/test_svm_multiclass.m
| | A	examples/matlab_and_octave/graphical/test_wd_wds_parallel.m
| | A	examples/matlab_and_octave/graphical/wds_consensus.m
| | A	examples/matlab_and_octave/graphical/wds_shift_interp.m
| | A	examples/matlab_and_octave/legacy/all_classifier.m
| | A	examples/matlab_and_octave/legacy/all_clustering.m
| | A	examples/matlab_and_octave/legacy/all_distance.m
| | A	examples/matlab_and_octave/legacy/all_distribution.m
| | A	examples/matlab_and_octave/legacy/all_kernels.m
| | A	examples/matlab_and_octave/legacy/all_preproc.m
| | A	examples/matlab_and_octave/legacy/all_regression.m
| | A	examples/matlab_and_octave/legacy/graphical/cluster_hierarchical.m
| | A	examples/matlab_and_octave/legacy/graphical/cluster_kmeans.m
| | A	examples/matlab_and_octave/legacy/graphical/entropy.m
| | A	examples/matlab_and_octave/legacy/graphical/hmm.m
| | A	examples/matlab_and_octave/legacy/graphical/lda_classification.m
| | A	examples/matlab_and_octave/legacy/graphical/local_alignment_kernel.m
| | A	examples/matlab_and_octave/legacy/graphical/mkl_pseudo_dna.m
| | A	examples/matlab_and_octave/legacy/graphical/spec_interp.m
| | A	examples/matlab_and_octave/legacy/graphical/svm_classification.m
| | A	examples/matlab_and_octave/legacy/graphical/svm_multiclass.m
| | A	examples/matlab_and_octave/legacy/graphical/svr_regression.m
| | A	examples/matlab_and_octave/legacy/graphical/test_gnpp_svm.m
| | A	examples/matlab_and_octave/legacy/graphical/test_poim_wds.m
| | A	examples/matlab_and_octave/legacy/graphical/test_regression.m
| | A	examples/matlab_and_octave/legacy/graphical/test_regression_mkl.m
| | A	examples/matlab_and_octave/legacy/graphical/test_spec_interp.m
| | A	examples/matlab_and_octave/legacy/graphical/test_svm_multiclass.m
| | A	examples/matlab_and_octave/legacy/graphical/test_wd_wds_parallel.m
| | A	examples/matlab_and_octave/legacy/graphical/wds_consensus.m
| | A	examples/matlab_and_octave/legacy/graphical/wds_shift_interp.m
| | A	examples/matlab_and_octave/legacy/liblinear.m
| | A	examples/matlab_and_octave/legacy/lik_kernel.m
| | A	examples/matlab_and_octave/legacy/lpboost.m
| | A	examples/matlab_and_octave/legacy/lpm.m
| | A	examples/matlab_and_octave/legacy/markov_chain.m
| | A	examples/matlab_and_octave/legacy/mkl_classify_christmas_star.m
| | A	examples/matlab_and_octave/legacy/mkl_regression_3sine_waves.m
| | A	examples/matlab_and_octave/legacy/mkl_regression_sine.m
| | A	examples/matlab_and_octave/legacy/spec_kernel.m
| | A	examples/matlab_and_octave/legacy/string_features.m
| | A	examples/matlab_and_octave/legacy/stringfeatures.m
| | A	examples/matlab_and_octave/legacy/svmocas.m
| | A	examples/matlab_and_octave/legacy/svmsgd.m
| | A	examples/matlab_and_octave/legacy/tests/test_classifier.m
| | A	examples/matlab_and_octave/legacy/tests/test_combined.m
| | A	examples/matlab_and_octave/legacy/tests/test_combined2.m
| | A	examples/matlab_and_octave/legacy/tests/test_complex_scenario.m
| | A	examples/matlab_and_octave/legacy/tests/test_custom_kernel.m
| | A	examples/matlab_and_octave/legacy/tests/test_interface.m
| | A	examples/matlab_and_octave/legacy/tests/test_kernel_optimization.m
| | A	examples/matlab_and_octave/legacy/tests/test_knn.m
| | A	examples/matlab_and_octave/legacy/tests/test_l2svm.m
| | A	examples/matlab_and_octave/legacy/tests/test_linadd.m
| | A	examples/matlab_and_octave/legacy/tests/test_linear_methods.m
| | A	examples/matlab_and_octave/legacy/tests/test_mkl.m
| | A	examples/matlab_and_octave/legacy/tests/test_mkl_svr.m
| | A	examples/matlab_and_octave/legacy/tests/test_mkl_svr_wrapper.m
| | A	examples/matlab_and_octave/legacy/tests/test_ocas_normalization.m
| | A	examples/matlab_and_octave/legacy/tests/test_one_class_svm.m
| | A	examples/matlab_and_octave/legacy/tests/test_regression_linadd.m
| | A	examples/matlab_and_octave/legacy/tests/test_sliding_window.m
| | A	examples/matlab_and_octave/legacy/tests/test_sparse.m
| | A	examples/matlab_and_octave/legacy/tests/test_sparse_methods.m
| | A	examples/matlab_and_octave/legacy/tests/test_spec_consensus.m
| | A	examples/matlab_and_octave/legacy/tests/test_subgradsvm.m
| | A	examples/matlab_and_octave/legacy/tests/test_svmlight_libsvm.m
| | A	examples/matlab_and_octave/legacy/tests/test_svrlight_libsvr.m
| | A	examples/matlab_and_octave/legacy/tests/test_wd_kernel.m
| | A	examples/matlab_and_octave/legacy/tests/test_wd_linadd.m
| | A	examples/matlab_and_octave/legacy/tests/test_wdocas.m
| | A	examples/matlab_and_octave/legacy/tests/test_wds_consensus.m
| | A	examples/matlab_and_octave/legacy/tests/test_wds_kernel.m
| | A	examples/matlab_and_octave/legacy/tests/test_wdshift_position_weights.m
| | A	examples/matlab_and_octave/legacy/tests/test_weighted_spectrum.m
| | A	examples/matlab_and_octave/legacy/wd_kernel.m
| | A	examples/matlab_and_octave/legacy/wds_kernel.m
| | A	examples/matlab_and_octave/legacy/weighted_spec.m
| | A	examples/matlab_and_octave/liblinear.m
| | A	examples/matlab_and_octave/lik_kernel.m
| | A	examples/matlab_and_octave/lpboost.m
| | A	examples/matlab_and_octave/lpm.m
| | A	examples/matlab_and_octave/markov_chain.m
| | A	examples/matlab_and_octave/mkl_classify_christmas_star.m
| | A	examples/matlab_and_octave/mkl_regression_3sine_waves.m
| | A	examples/matlab_and_octave/mkl_regression_sine.m
| | A	examples/matlab_and_octave/spec_kernel.m
| | A	examples/matlab_and_octave/string_features.m
| | A	examples/matlab_and_octave/svmocas.m
| | A	examples/matlab_and_octave/svmsgd.m
| | A	examples/matlab_and_octave/tests/test_classifier.m
| | A	examples/matlab_and_octave/tests/test_combined.m
| | A	examples/matlab_and_octave/tests/test_combined2.m
| | A	examples/matlab_and_octave/tests/test_complex_scenario.m
| | A	examples/matlab_and_octave/tests/test_custom_kernel.m
| | A	examples/matlab_and_octave/tests/test_interface.m
| | A	examples/matlab_and_octave/tests/test_kernel_optimization.m
| | A	examples/matlab_and_octave/tests/test_knn.m
| | A	examples/matlab_and_octave/tests/test_l2svm.m
| | A	examples/matlab_and_octave/tests/test_linadd.m
| | A	examples/matlab_and_octave/tests/test_linear_methods.m
| | A	examples/matlab_and_octave/tests/test_mkl.m
| | A	examples/matlab_and_octave/tests/test_mkl_svr.m
| | A	examples/matlab_and_octave/tests/test_mkl_svr_wrapper.m
| | A	examples/matlab_and_octave/tests/test_ocas_normalization.m
| | A	examples/matlab_and_octave/tests/test_one_class_svm.m
| | A	examples/matlab_and_octave/tests/test_regression_linadd.m
| | A	examples/matlab_and_octave/tests/test_sliding_window.m
| | A	examples/matlab_and_octave/tests/test_sparse.m
| | A	examples/matlab_and_octave/tests/test_sparse_methods.m
| | A	examples/matlab_and_octave/tests/test_spec_consensus.m
| | A	examples/matlab_and_octave/tests/test_subgradsvm.m
| | A	examples/matlab_and_octave/tests/test_svmlight_libsvm.m
| | A	examples/matlab_and_octave/tests/test_svrlight_libsvr.m
| | A	examples/matlab_and_octave/tests/test_wd_kernel.m
| | A	examples/matlab_and_octave/tests/test_wd_linadd.m
| | A	examples/matlab_and_octave/tests/test_wdocas.m
| | A	examples/matlab_and_octave/tests/test_wds_consensus.m
| | A	examples/matlab_and_octave/tests/test_wds_kernel.m
| | A	examples/matlab_and_octave/tests/test_wdshift_position_weights.m
| | A	examples/matlab_and_octave/tests/test_weighted_spectrum.m
| | A	examples/matlab_and_octave/tools/PCACut.m
| | A	examples/matlab_and_octave/tools/README
| | A	examples/matlab_and_octave/tools/calcroc.m
| | A	examples/matlab_and_octave/tools/calcrocscore.m
| | A	examples/matlab_and_octave/tools/graph_hmm.m
| | A	examples/matlab_and_octave/tools/graph_hmm2.m
| | A	examples/matlab_and_octave/tools/model_to_graph.m
| | A	examples/matlab_and_octave/tools/plotroc.m
| | A	examples/matlab_and_octave/tools/read_feature_matrix.m
| | A	examples/matlab_and_octave/tools/readroc.m
| | A	examples/matlab_and_octave/tools/save_as_ascii.m
| | A	examples/matlab_and_octave/tools/save_as_double.m
| | A	examples/matlab_and_octave/wd_kernel.m
| | A	examples/matlab_and_octave/wds_kernel.m
| | A	examples/matlab_and_octave/weighted_spec.m
| | A	examples/octave
| | A	examples/octave-modular/all_classifier.m
| | A	examples/octave-modular/all_clustering.m
| | A	examples/octave-modular/all_distance.m
| | A	examples/octave-modular/all_distribution.m
| | A	examples/octave-modular/all_kernels.m
| | A	examples/octave-modular/all_preproc.m
| | A	examples/octave-modular/all_regression.m
| | A	examples/octave-modular/check.sh
| | A	examples/octave-modular/libsvm.m
| | A	examples/python-modular/all_classifier.py
| | A	examples/python-modular/all_clustering.py
| | A	examples/python-modular/all_distance.py
| | A	examples/python-modular/all_distribution.py
| | A	examples/python-modular/all_kernels.py
| | A	examples/python-modular/all_preproc.py
| | A	examples/python-modular/all_regression.py
| | A	examples/python-modular/check.sh
| | A	examples/python-modular/check_commwordkernel_memleak.py
| | A	examples/python-modular/graphical/all_evaluation.py
| | A	examples/python-modular/graphical/krr.py
| | A	examples/python-modular/graphical/krr_sinc.py
| | A	examples/python-modular/graphical/lda.py
| | A	examples/python-modular/graphical/multiple_smvs.py
| | A	examples/python-modular/graphical/svm.py
| | A	examples/python-modular/graphical/svmlin.py
| | A	examples/python-modular/graphical/svr_sinc.py
| | A	examples/python-modular/graphical/util.py
| | A	examples/python-modular/numpy_commands.py
| | A	examples/python-modular/read_svmlight_format.py
| | A	examples/python-modular/stringfeatures.py
| | A	examples/python/all_classifier.py
| | A	examples/python/all_clustering.py
| | A	examples/python/all_distance.py
| | A	examples/python/all_distribution.py
| | A	examples/python/all_kernels.py
| | A	examples/python/all_preproc.py
| | A	examples/python/all_regression.py
| | A	examples/python/check.sh
| | A	examples/python/graphical/svm_classificaton.py
| | A	examples/python/graphical/svr_regression.py
| | A	examples/python/test_mkl.py
| | A	examples/r-modular/all_classifier.R
| | A	examples/r-modular/all_clustering.R
| | A	examples/r-modular/all_distance.R
| | A	examples/r-modular/all_distribution.R
| | A	examples/r-modular/all_kernels.R
| | A	examples/r-modular/all_preproc.R
| | A	examples/r-modular/all_regression.R
| | A	examples/r-modular/check.sh
| | A	examples/r-modular/first_shot.R
| | A	examples/r-modular/libsvm.R
| | A	examples/r/all_classifier.R
| | A	examples/r/all_clustering.R
| | A	examples/r/all_distance.R
| | A	examples/r/all_distribution.R
| | A	examples/r/all_kernels.R
| | A	examples/r/all_preproc.R
| | A	examples/r/all_regression.R
| | A	examples/r/check.sh
| | A	examples/r/graphical/hmm.R
| | A	examples/r/graphical/svm_classification.R
| | A	examples/r/graphical/svr_regression.R
| | D	matlab
| | D	matlab_and_octave/check_examples.sh
| | D	matlab_and_octave/examples/all_classifier.m
| | D	matlab_and_octave/examples/all_clustering.m
| | D	matlab_and_octave/examples/all_distance.m
| | D	matlab_and_octave/examples/all_distribution.m
| | D	matlab_and_octave/examples/all_kernels.m
| | D	matlab_and_octave/examples/all_preproc.m
| | D	matlab_and_octave/examples/all_regression.m
| | D	matlab_and_octave/examples/graphical/cluster_hierarchical.m
| | D	matlab_and_octave/examples/graphical/cluster_kmeans.m
| | D	matlab_and_octave/examples/graphical/entropy.m
| | D	matlab_and_octave/examples/graphical/hmm.m
| | D	matlab_and_octave/examples/graphical/lda_classification.m
| | D	matlab_and_octave/examples/graphical/local_alignment_kernel.m
| | D	matlab_and_octave/examples/graphical/mkl_pseudo_dna.m
| | D	matlab_and_octave/examples/graphical/spec_interp.m
| | D	matlab_and_octave/examples/graphical/svm_classification.m
| | D	matlab_and_octave/examples/graphical/svm_multiclass.m
| | D	matlab_and_octave/examples/graphical/svr_regression.m
| | D	matlab_and_octave/examples/graphical/test_gnpp_svm.m
| | D	matlab_and_octave/examples/graphical/test_poim_wds.m
| | D	matlab_and_octave/examples/graphical/test_regression.m
| | D	matlab_and_octave/examples/graphical/test_regression_mkl.m
| | D	matlab_and_octave/examples/graphical/test_spec_interp.m
| | D	matlab_and_octave/examples/graphical/test_svm_multiclass.m
| | D	matlab_and_octave/examples/graphical/test_wd_wds_parallel.m
| | D	matlab_and_octave/examples/graphical/wds_consensus.m
| | D	matlab_and_octave/examples/graphical/wds_shift_interp.m
| | D	matlab_and_octave/examples/legacy/all_classifier.m
| | D	matlab_and_octave/examples/legacy/all_clustering.m
| | D	matlab_and_octave/examples/legacy/all_distance.m
| | D	matlab_and_octave/examples/legacy/all_distribution.m
| | D	matlab_and_octave/examples/legacy/all_kernels.m
| | D	matlab_and_octave/examples/legacy/all_preproc.m
| | D	matlab_and_octave/examples/legacy/all_regression.m
| | D	matlab_and_octave/examples/legacy/graphical/cluster_hierarchical.m
| | D	matlab_and_octave/examples/legacy/graphical/cluster_kmeans.m
| | D	matlab_and_octave/examples/legacy/graphical/entropy.m
| | D	matlab_and_octave/examples/legacy/graphical/hmm.m
| | D	matlab_and_octave/examples/legacy/graphical/lda_classification.m
| | D	matlab_and_octave/examples/legacy/graphical/local_alignment_kernel.m
| | D	matlab_and_octave/examples/legacy/graphical/mkl_pseudo_dna.m
| | D	matlab_and_octave/examples/legacy/graphical/spec_interp.m
| | D	matlab_and_octave/examples/legacy/graphical/svm_classification.m
| | D	matlab_and_octave/examples/legacy/graphical/svm_multiclass.m
| | D	matlab_and_octave/examples/legacy/graphical/svr_regression.m
| | D	matlab_and_octave/examples/legacy/graphical/test_gnpp_svm.m
| | D	matlab_and_octave/examples/legacy/graphical/test_poim_wds.m
| | D	matlab_and_octave/examples/legacy/graphical/test_regression.m
| | D	matlab_and_octave/examples/legacy/graphical/test_regression_mkl.m
| | D	matlab_and_octave/examples/legacy/graphical/test_spec_interp.m
| | D	matlab_and_octave/examples/legacy/graphical/test_svm_multiclass.m
| | D	matlab_and_octave/examples/legacy/graphical/test_wd_wds_parallel.m
| | D	matlab_and_octave/examples/legacy/graphical/wds_consensus.m
| | D	matlab_and_octave/examples/legacy/graphical/wds_shift_interp.m
| | D	matlab_and_octave/examples/legacy/liblinear.m
| | D	matlab_and_octave/examples/legacy/lik_kernel.m
| | D	matlab_and_octave/examples/legacy/lpboost.m
| | D	matlab_and_octave/examples/legacy/lpm.m
| | D	matlab_and_octave/examples/legacy/markov_chain.m
| | D	matlab_and_octave/examples/legacy/mkl_classify_christmas_star.m
| | D	matlab_and_octave/examples/legacy/mkl_regression_3sine_waves.m
| | D	matlab_and_octave/examples/legacy/mkl_regression_sine.m
| | D	matlab_and_octave/examples/legacy/spec_kernel.m
| | D	matlab_and_octave/examples/legacy/string_features.m
| | D	matlab_and_octave/examples/legacy/stringfeatures.m
| | D	matlab_and_octave/examples/legacy/svmocas.m
| | D	matlab_and_octave/examples/legacy/svmsgd.m
| | D	matlab_and_octave/examples/legacy/tests/test_classifier.m
| | D	matlab_and_octave/examples/legacy/tests/test_combined.m
| | D	matlab_and_octave/examples/legacy/tests/test_combined2.m
| | D	matlab_and_octave/examples/legacy/tests/test_complex_scenario.m
| | D	matlab_and_octave/examples/legacy/tests/test_custom_kernel.m
| | D	matlab_and_octave/examples/legacy/tests/test_interface.m
| | D	matlab_and_octave/examples/legacy/tests/test_kernel_optimization.m
| | D	matlab_and_octave/examples/legacy/tests/test_knn.m
| | D	matlab_and_octave/examples/legacy/tests/test_l2svm.m
| | D	matlab_and_octave/examples/legacy/tests/test_linadd.m
| | D	matlab_and_octave/examples/legacy/tests/test_linear_methods.m
| | D	matlab_and_octave/examples/legacy/tests/test_mkl.m
| | D	matlab_and_octave/examples/legacy/tests/test_mkl_svr.m
| | D	matlab_and_octave/examples/legacy/tests/test_mkl_svr_wrapper.m
| | D	matlab_and_octave/examples/legacy/tests/test_ocas_normalization.m
| | D	matlab_and_octave/examples/legacy/tests/test_one_class_svm.m
| | D	matlab_and_octave/examples/legacy/tests/test_regression_linadd.m
| | D	matlab_and_octave/examples/legacy/tests/test_sliding_window.m
| | D	matlab_and_octave/examples/legacy/tests/test_sparse.m
| | D	matlab_and_octave/examples/legacy/tests/test_sparse_methods.m
| | D	matlab_and_octave/examples/legacy/tests/test_spec_consensus.m
| | D	matlab_and_octave/examples/legacy/tests/test_subgradsvm.m
| | D	matlab_and_octave/examples/legacy/tests/test_svmlight_libsvm.m
| | D	matlab_and_octave/examples/legacy/tests/test_svrlight_libsvr.m
| | D	matlab_and_octave/examples/legacy/tests/test_wd_kernel.m
| | D	matlab_and_octave/examples/legacy/tests/test_wd_linadd.m
| | D	matlab_and_octave/examples/legacy/tests/test_wdocas.m
| | D	matlab_and_octave/examples/legacy/tests/test_wds_consensus.m
| | D	matlab_and_octave/examples/legacy/tests/test_wds_kernel.m
| | D	matlab_and_octave/examples/legacy/tests/test_wdshift_position_weights.m
| | D	matlab_and_octave/examples/legacy/tests/test_weighted_spectrum.m
| | D	matlab_and_octave/examples/legacy/wd_kernel.m
| | D	matlab_and_octave/examples/legacy/wds_kernel.m
| | D	matlab_and_octave/examples/legacy/weighted_spec.m
| | D	matlab_and_octave/examples/liblinear.m
| | D	matlab_and_octave/examples/lik_kernel.m
| | D	matlab_and_octave/examples/lpboost.m
| | D	matlab_and_octave/examples/lpm.m
| | D	matlab_and_octave/examples/markov_chain.m
| | D	matlab_and_octave/examples/mkl_classify_christmas_star.m
| | D	matlab_and_octave/examples/mkl_regression_3sine_waves.m
| | D	matlab_and_octave/examples/mkl_regression_sine.m
| | D	matlab_and_octave/examples/spec_kernel.m
| | D	matlab_and_octave/examples/string_features.m
| | D	matlab_and_octave/examples/svmocas.m
| | D	matlab_and_octave/examples/svmsgd.m
| | D	matlab_and_octave/examples/tests/test_classifier.m
| | D	matlab_and_octave/examples/tests/test_combined.m
| | D	matlab_and_octave/examples/tests/test_combined2.m
| | D	matlab_and_octave/examples/tests/test_complex_scenario.m
| | D	matlab_and_octave/examples/tests/test_custom_kernel.m
| | D	matlab_and_octave/examples/tests/test_interface.m
| | D	matlab_and_octave/examples/tests/test_kernel_optimization.m
| | D	matlab_and_octave/examples/tests/test_knn.m
| | D	matlab_and_octave/examples/tests/test_l2svm.m
| | D	matlab_and_octave/examples/tests/test_linadd.m
| | D	matlab_and_octave/examples/tests/test_linear_methods.m
| | D	matlab_and_octave/examples/tests/test_mkl.m
| | D	matlab_and_octave/examples/tests/test_mkl_svr.m
| | D	matlab_and_octave/examples/tests/test_mkl_svr_wrapper.m
| | D	matlab_and_octave/examples/tests/test_ocas_normalization.m
| | D	matlab_and_octave/examples/tests/test_one_class_svm.m
| | D	matlab_and_octave/examples/tests/test_regression_linadd.m
| | D	matlab_and_octave/examples/tests/test_sliding_window.m
| | D	matlab_and_octave/examples/tests/test_sparse.m
| | D	matlab_and_octave/examples/tests/test_sparse_methods.m
| | D	matlab_and_octave/examples/tests/test_spec_consensus.m
| | D	matlab_and_octave/examples/tests/test_subgradsvm.m
| | D	matlab_and_octave/examples/tests/test_svmlight_libsvm.m
| | D	matlab_and_octave/examples/tests/test_svrlight_libsvr.m
| | D	matlab_and_octave/examples/tests/test_wd_kernel.m
| | D	matlab_and_octave/examples/tests/test_wd_linadd.m
| | D	matlab_and_octave/examples/tests/test_wdocas.m
| | D	matlab_and_octave/examples/tests/test_wds_consensus.m
| | D	matlab_and_octave/examples/tests/test_wds_kernel.m
| | D	matlab_and_octave/examples/tests/test_wdshift_position_weights.m
| | D	matlab_and_octave/examples/tests/test_weighted_spectrum.m
| | D	matlab_and_octave/examples/tools/PCACut.m
| | D	matlab_and_octave/examples/tools/README
| | D	matlab_and_octave/examples/tools/calcroc.m
| | D	matlab_and_octave/examples/tools/calcrocscore.m
| | D	matlab_and_octave/examples/tools/graph_hmm.m
| | D	matlab_and_octave/examples/tools/graph_hmm2.m
| | D	matlab_and_octave/examples/tools/model_to_graph.m
| | D	matlab_and_octave/examples/tools/plotroc.m
| | D	matlab_and_octave/examples/tools/read_feature_matrix.m
| | D	matlab_and_octave/examples/tools/readroc.m
| | D	matlab_and_octave/examples/tools/save_as_ascii.m
| | D	matlab_and_octave/examples/tools/save_as_double.m
| | D	matlab_and_octave/examples/wd_kernel.m
| | D	matlab_and_octave/examples/wds_kernel.m
| | D	matlab_and_octave/examples/weighted_spec.m
| | D	matlab_and_octave/testcases/WeightedDegreeString.m
| | D	matlab_and_octave/testcases/run_matlab.sh
| | D	matlab_and_octave/testcases/run_octave.sh
| | D	matlab_and_octave/testcases/test_chi2_kernel.m
| | D	matlab_and_octave/testcases/test_cws_kernel.m
| | D	matlab_and_octave/testcases/test_gaussian_kernel.m
| | D	matlab_and_octave/testcases/test_kernels.m
| | D	matlab_and_octave/testcases/test_linear_kernel.m
| | D	matlab_and_octave/testcases/test_matlab.m
| | D	matlab_and_octave/testcases/test_octave.m
| | D	matlab_and_octave/testcases/test_poly_kernel.m
| | D	matlab_and_octave/testcases/test_sigmoid_kernel.m
| | D	matlab_and_octave/testcases/test_svm.m
| | D	matlab_and_octave/testcases/test_wdchar_kernel.m
| | D	matlab_and_octave/testcases/test_wds_kernel.m
| | D	octave
| | D	octave-modular/check_examples.sh
| | D	octave-modular/examples/all_classifier.m
| | D	octave-modular/examples/all_clustering.m
| | D	octave-modular/examples/all_distance.m
| | D	octave-modular/examples/all_distribution.m
| | D	octave-modular/examples/all_kernels.m
| | D	octave-modular/examples/all_preproc.m
| | D	octave-modular/examples/all_regression.m
| | D	octave-modular/examples/libsvm.m
| | D	python-modular/check_examples.sh
| | D	python-modular/examples/all_classifier.py
| | D	python-modular/examples/all_clustering.py
| | D	python-modular/examples/all_distance.py
| | D	python-modular/examples/all_distribution.py
| | D	python-modular/examples/all_kernels.py
| | D	python-modular/examples/all_preproc.py
| | D	python-modular/examples/all_regression.py
| | D	python-modular/examples/check_commwordkernel_memleak.py
| | D	python-modular/examples/graphical/all_evaluation.py
| | D	python-modular/examples/graphical/krr.py
| | D	python-modular/examples/graphical/krr_sinc.py
| | D	python-modular/examples/graphical/lda.py
| | D	python-modular/examples/graphical/multiple_smvs.py
| | D	python-modular/examples/graphical/svm.py
| | D	python-modular/examples/graphical/svmlin.py
| | D	python-modular/examples/graphical/svr_sinc.py
| | D	python-modular/examples/graphical/util.py
| | D	python-modular/examples/numpy_commands.py
| | D	python-modular/examples/read_svmlight_format.py
| | D	python-modular/examples/stringfeatures.py
| | D	python-modular/testcases/classifier.py
| | D	python-modular/testcases/clustering.py
| | D	python-modular/testcases/distance.py
| | D	python-modular/testcases/distribution.py
| | D	python-modular/testcases/kernel.py
| | D	python-modular/testcases/preproc.py
| | D	python-modular/testcases/regression.py
| | D	python-modular/testcases/test_all.sh
| | D	python-modular/testcases/test_one.py
| | D	python-modular/testcases/util.py
| | D	python/check_examples.sh
| | D	python/examples/all_classifier.py
| | D	python/examples/all_clustering.py
| | D	python/examples/all_distance.py
| | D	python/examples/all_distribution.py
| | D	python/examples/all_kernels.py
| | D	python/examples/all_preproc.py
| | D	python/examples/all_regression.py
| | D	python/examples/graphical/svm_classificaton.py
| | D	python/examples/graphical/svr_regression.py
| | D	python/examples/test_mkl.py
| | D	python/testcases/m_print.py
| | D	python/testcases/read_mfile.py
| | D	python/testcases/run.sh
| | D	python/testcases/test.py
| | D	python/testcases/test_kernels.py
| | D	python/testcases/test_python
| | D	r-modular/check_examples.sh
| | D	r-modular/examples/all_classifier.R
| | D	r-modular/examples/all_clustering.R
| | D	r-modular/examples/all_distance.R
| | D	r-modular/examples/all_distribution.R
| | D	r-modular/examples/all_kernels.R
| | D	r-modular/examples/all_preproc.R
| | D	r-modular/examples/all_regression.R
| | D	r-modular/examples/first_shot.R
| | D	r-modular/examples/libsvm.R
| | D	r/check_examples.sh
| | M	src/Makefile
| | A	testsuite/matlab
| | A	testsuite/matlab_and_octave/WeightedDegreeString.m
| | A	testsuite/matlab_and_octave/run_matlab.sh
| | A	testsuite/matlab_and_octave/run_octave.sh
| | A	testsuite/matlab_and_octave/test_chi2_kernel.m
| | A	testsuite/matlab_and_octave/test_cws_kernel.m
| | A	testsuite/matlab_and_octave/test_gaussian_kernel.m
| | A	testsuite/matlab_and_octave/test_kernels.m
| | A	testsuite/matlab_and_octave/test_linear_kernel.m
| | A	testsuite/matlab_and_octave/test_matlab.m
| | A	testsuite/matlab_and_octave/test_octave.m
| | A	testsuite/matlab_and_octave/test_poly_kernel.m
| | A	testsuite/matlab_and_octave/test_sigmoid_kernel.m
| | A	testsuite/matlab_and_octave/test_svm.m
| | A	testsuite/matlab_and_octave/test_wdchar_kernel.m
| | A	testsuite/matlab_and_octave/test_wds_kernel.m
| | A	testsuite/octave
| | A	testsuite/python-modular/classifier.py
| | A	testsuite/python-modular/clustering.py
| | A	testsuite/python-modular/distance.py
| | A	testsuite/python-modular/distribution.py
| | A	testsuite/python-modular/kernel.py
| | A	testsuite/python-modular/preproc.py
| | A	testsuite/python-modular/regression.py
| | A	testsuite/python-modular/test_all.sh
| | A	testsuite/python-modular/test_one.py
| | A	testsuite/python-modular/util.py
| | A	testsuite/python/m_print.py
| | A	testsuite/python/read_mfile.py
| | A	testsuite/python/run.sh
| | A	testsuite/python/test.py
| | A	testsuite/python/test_kernels.py
| | A	testsuite/python/test_python
| | A	testsuite/r/read_mfile.R
| | A	testsuite/r/run.sh
| | A	testsuite/r/test_R.R
| | A	testsuite/r/test_kernels.R
| |   
* | commit 5c0b49b1d5f10dbee6b0674b97d627599baf07c6
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed May 28 19:53:04 2008 +0000
| | 
| |     interface:
| |     - Compile fix for cmdline.
| | 
| | M	src/interface/CmdLineInterface.h
| |   
* | commit 02558be938c09be56146677f8f8e39749f07f45c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 28 19:20:13 2008 +0000
| | 
| |     revert accidental change - r-modular is crashy when we do proper garbage collection so better leak memory for now
| | 
| | M	src/base/SGObject.h
| |   
* | commit 291e0872aca728405c4378908584e815c51a5575
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 28 19:14:48 2008 +0000
| | 
| |     don't show progress by default
| | 
| | M	src/base/SGObject.h
| | M	src/lib/io.cpp
| |   
* | commit 8b4d8b1246249a5882277838e5f75243a8d84837
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed May 28 00:04:02 2008 +0000
| | 
| |     - All derived classes should now call their parent classes on construction.
| | 
| | M	src/classifier/KNN.cpp
| | M	src/classifier/KernelPerceptron.cpp
| | M	src/classifier/LDA.cpp
| | M	src/classifier/LPBoost.cpp
| | M	src/classifier/LPM.cpp
| | M	src/classifier/LinearClassifier.cpp
| | M	src/classifier/Perceptron.cpp
| | M	src/classifier/PluginEstimate.cpp
| | M	src/classifier/SparseLinearClassifier.cpp
| | M	src/classifier/SubGradientLPM.cpp
| | M	src/classifier/svm/CPLEXSVM.cpp
| | M	src/classifier/svm/CPLEXSVM.h
| | M	src/classifier/svm/GMNPSVM.cpp
| | M	src/classifier/svm/GNPPSVM.cpp
| | M	src/classifier/svm/GPBTSVM.cpp
| | M	src/classifier/svm/LibLinear.cpp
| | M	src/classifier/svm/LibSVM.cpp
| | M	src/classifier/svm/LibSVMMultiClass.cpp
| | M	src/classifier/svm/MPDSVM.cpp
| | M	src/classifier/svm/MultiClassSVM.cpp
| | M	src/classifier/svm/SVM.cpp
| | M	src/classifier/svm/SVMLin.cpp
| | M	src/classifier/svm/SVMOcas.cpp
| | M	src/classifier/svm/SVMSGD.cpp
| | M	src/classifier/svm/SVM_light.cpp
| | M	src/classifier/svm/SVM_light.h
| | M	src/classifier/svm/SVM_linear.cpp
| | M	src/classifier/svm/SubGradientSVM.cpp
| | M	src/classifier/svm/Tron.cpp
| | M	src/classifier/svm/WDSVMOcas.cpp
| | M	src/classifier/svm/gmnplib.cpp
| | M	src/classifier/svm/gnpplib.cpp
| | M	src/classifier/svm/gpdt.cpp
| | M	src/classifier/svm/qpbsvmlib.cpp
| | M	src/clustering/Hierarchical.cpp
| | M	src/clustering/KMeans.cpp
| | M	src/distance/CanberraWordDistance.cpp
| | M	src/distance/Distance.cpp
| | M	src/distance/DistanceMachine.cpp
| | M	src/distance/HammingWordDistance.cpp
| | M	src/distance/MinkowskiMetric.cpp
| | M	src/distributions/Distribution.cpp
| | M	src/distributions/histogram/Histogram.cpp
| | M	src/distributions/hmm/GHMM.cpp
| | M	src/distributions/hmm/LinearHMM.cpp
| | M	src/features/Alphabet.cpp
| | M	src/features/ByteFeatures.cpp
| | M	src/features/ByteFeatures.h
| | M	src/features/CharFeatures.cpp
| | M	src/features/CharFeatures.h
| | M	src/features/CombinedFeatures.cpp
| | M	src/features/FKFeatures.cpp
| | M	src/features/Features.cpp
| | M	src/features/Labels.cpp
| | M	src/features/MindyGramFeatures.h
| | M	src/features/RealFeatures.h
| | M	src/features/ShortFeatures.cpp
| | M	src/features/ShortFeatures.h
| | M	src/features/SimpleFeatures.h
| | M	src/features/SparseFeatures.h
| | M	src/features/StringFeatures.h
| | M	src/features/TOPFeatures.cpp
| | M	src/features/TOPFeatures.h
| | M	src/features/WordFeatures.cpp
| | M	src/features/WordFeatures.h
| | M	src/guilib/GUIClassifier.cpp
| | M	src/guilib/GUIDistance.cpp
| | M	src/guilib/GUIFeatures.cpp
| | M	src/guilib/GUIHMM.cpp
| | M	src/guilib/GUIKernel.cpp
| | M	src/guilib/GUIMath.cpp
| | M	src/guilib/GUIPreProc.cpp
| | M	src/guilib/GUITime.cpp
| | M	src/interface/OctaveInterface.h
| | M	src/interface/PythonInterface.cpp
| | M	src/interface/PythonInterface.h
| | M	src/interface/RInterface.cpp
| | M	src/interface/SGInterface.cpp
| | M	src/kernel/AUCKernel.cpp
| | M	src/kernel/Chi2Kernel.cpp
| | M	src/kernel/CombinedKernel.cpp
| | M	src/kernel/CommUlongStringKernel.cpp
| | M	src/kernel/CommWordStringKernel.cpp
| | M	src/kernel/CommWordStringKernel.h
| | M	src/kernel/ConstKernel.cpp
| | M	src/kernel/CustomKernel.cpp
| | M	src/kernel/DiagKernel.cpp
| | M	src/kernel/DistanceKernel.cpp
| | M	src/kernel/FixedDegreeStringKernel.cpp
| | M	src/kernel/HistogramWordKernel.cpp
| | M	src/kernel/Kernel.cpp
| | M	src/kernel/KernelMachine.cpp
| | M	src/kernel/LinearByteKernel.cpp
| | M	src/kernel/LinearKernel.cpp
| | M	src/kernel/LinearStringKernel.cpp
| | M	src/kernel/LinearWordKernel.cpp
| | M	src/kernel/LocalAlignmentStringKernel.cpp
| | M	src/kernel/LocalityImprovedStringKernel.cpp
| | M	src/kernel/MindyGramKernel.cpp
| | M	src/kernel/PolyKernel.cpp
| | M	src/kernel/PolyMatchStringKernel.cpp
| | M	src/kernel/PolyMatchWordKernel.cpp
| | M	src/kernel/PyramidChi2.cpp
| | M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| | M	src/kernel/SparseGaussianKernel.cpp
| | M	src/kernel/SparseLinearKernel.cpp
| | M	src/kernel/SparsePolyKernel.cpp
| | M	src/kernel/WeightedCommWordStringKernel.cpp
| | M	src/kernel/WeightedDegreePositionStringKernel.cpp
| | M	src/kernel/WeightedDegreeStringKernel.cpp
| | M	src/kernel/WordMatchKernel.cpp
| | M	src/lib/Array.h
| | M	src/lib/Array2.h
| | M	src/lib/Array3.h
| | M	src/lib/Cache.h
| | M	src/lib/Cplex.cpp
| | M	src/lib/DynamicArray.h
| | M	src/lib/File.cpp
| | M	src/lib/Mathematics.cpp
| | M	src/lib/Signal.cpp
| | M	src/lib/SimpleFile.h
| | M	src/lib/Time.cpp
| | M	src/lib/Trie.h
| | M	src/preproc/LogPlusOne.cpp
| | M	src/preproc/NormOne.cpp
| | M	src/preproc/PreProc.cpp
| | M	src/preproc/SortUlongString.cpp
| | M	src/preproc/SortWord.cpp
| | M	src/preproc/SortWordString.cpp
| | M	src/preproc/StringPreProc.h
| | M	src/regression/KRR.cpp
| | M	src/regression/svr/LibSVR.cpp
| | M	src/regression/svr/SVR_light.cpp
| | M	src/structure/DynProg.cpp
| | M	src/structure/Plif.cpp
| | M	src/structure/PlifArray.cpp
| |   
* | commit f625879fafc2cc90f92022b3bf63f5188cc38537
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 27 15:11:30 2008 +0000
| | 
| |     fix a bug in linadd/batch computation for WD* kernels when degree=1 + minor code cleanup
| | 
| | M	src/kernel/WeightedDegreeStringKernel.cpp
| | M	src/lib/Trie.h
| |   
* | commit 593b48c1b60ee455063c223e91c3fa230eff622b
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Tue May 27 00:25:09 2008 +0000
| | 
| |     examples:
| |     - Handle exceptions gracefully for each interface when there is no
| |       SVM/SVRLight available.
| | 
| | M	matlab_and_octave/examples/all_classifier.m
| | M	matlab_and_octave/examples/all_regression.m
| | M	octave-modular/examples/all_classifier.m
| | M	octave-modular/examples/all_regression.m
| | M	python-modular/examples/all_classifier.py
| | M	python-modular/examples/all_regression.py
| | M	python-modular/examples/graphical/multiple_smvs.py
| | M	python-modular/examples/graphical/svmlin.py
| | M	python/examples/all_classifier.py
| | M	python/examples/all_regression.py
| | M	python/examples/test_mkl.py
| | M	r-modular/examples/all_classifier.R
| | M	r-modular/examples/all_regression.R
| | M	r/examples/all_classifier.R
| | M	r/examples/all_regression.R
| |   
* | commit 39ae93188ca8353b2062c86cb24f4c12e68cc061
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Mon May 26 20:38:18 2008 +0000
| | 
| |     - Removed TODO, it is now to be found in trac.
| | 
| | D	src/TODO
| |   
* | commit bde6d7cad86a4a2e59fae70c884bc7958c79cd1d
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Sun May 25 20:32:26 2008 +0000
| | 
| |     library:
| |     - Modified SG_DONE to only display a message when progress bar is enabled.
| | 
| | M	src/classifier/svm/SVM_light.cpp
| | M	src/lib/io.cpp
| | M	src/lib/io.h
| | M	src/preproc/PCACut.cpp
| | M	src/regression/svr/SVR_light.cpp
| |   
* | commit 2e604cdab1dd81213afdb39774a0e8a21bbc32e6
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun May 25 17:33:24 2008 +0000
| | 
| |     fix dysfunctional lapack bug (it was only working OK with atlas or when neither atlas or lapack were available)
| | 
| | M	src/lib/lapack.cpp
| | M	src/lib/lapack.h
| | M	src/lib/python_typemaps.i
| |   
* | commit be1ffe9e44a84d47a447f9f2cc5b6ea8b1105e58
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat May 24 06:45:51 2008 +0000
| | 
| |     rename numpy_* -> *
| | 
| | A	python-modular/examples/graphical/krr.py
| | A	python-modular/examples/graphical/krr_sinc.py
| | A	python-modular/examples/graphical/lda.py
| | D	python-modular/examples/graphical/numpy_krr.py
| | D	python-modular/examples/graphical/numpy_krr_sinc.py
| | D	python-modular/examples/graphical/numpy_lda.py
| | D	python-modular/examples/graphical/numpy_svm.py
| | D	python-modular/examples/graphical/numpy_svmlin.py
| | D	python-modular/examples/graphical/numpy_svr_sinc.py
| | A	python-modular/examples/graphical/svm.py
| | A	python-modular/examples/graphical/svmlin.py
| | A	python-modular/examples/graphical/svr_sinc.py
| |   
* | commit 949223dbe15fc7efc9cdf808b48cd1631ce2dee3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat May 24 06:27:32 2008 +0000
| | 
| |     update TODO
| | 
| | M	src/TODO
| |   
* | commit d3a1ac1b349a5c954f9c99e2ed93e3eb8713acad
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat May 24 06:19:55 2008 +0000
| | 
| |     allow cachesize == 2 as lower limit
| | 
| | M	src/classifier/svm/gmnplib.cpp
| | M	src/classifier/svm/gnpplib.cpp
| |   
* | commit 636566ebc14fe9ed77171ec9f10e8e6abd2c862e
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri May 23 20:57:47 2008 +0000
| | 
| |     library:
| |     - Introduced SG_DONE.
| | 
| | M	src/classifier/svm/SVM.cpp
| | M	src/classifier/svm/SVM_light.cpp
| | M	src/distance/Distance.cpp
| | M	src/distributions/hmm/HMM.cpp
| | M	src/features/FKFeatures.cpp
| | M	src/features/RealFileFeatures.cpp
| | M	src/features/TOPFeatures.cpp
| | M	src/kernel/Kernel.cpp
| | M	src/kernel/WeightedDegreePositionStringKernel.cpp
| | M	src/kernel/WeightedDegreeStringKernel.cpp
| | M	src/lib/io.h
| | M	src/preproc/PCACut.cpp
| | M	src/regression/svr/SVR_light.cpp
| |   
* | commit 13551bd8d9c1cd1433e330cb5d46d134bd3b0b7c
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri May 23 20:34:12 2008 +0000
| | 
| |     library:
| |     - Fixed issue of not terminating when loglevel is set high enough.
| |     - Improved efficiency of message printing.
| | 
| | M	src/TODO
| | M	src/lib/io.cpp
| | M	src/lib/io.h
| |   
* | commit d7d2167a605cabce3babefd0ab27dbeed3a6bc63
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri May 23 20:32:52 2008 +0000
| | 
| |     interface:
| |     - Extended static interface to support loglevels NOTICE, CRITICAL, ALERT and
| |       EMERGENCY. It is arguable if the last 3 are feasible, because Shogun is
| |       currently terminated if these situations occur.
| | 
| | M	src/interface/SGInterface.cpp
| |   
* | commit 3b5136cb8c48d0bf90f0e7ed22d99a827282703d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 23 08:37:04 2008 +0000
| | 
| |     compile fix when lapack is not available
| | 
| | M	src/guilib/GUIPreProc.cpp
| |   
* | commit c0cdf593ce93ff2314f0ab2ee9a2e036f75a1f8a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 23 06:58:50 2008 +0000
| | 
| |      updated TODO
| | 
| | M	src/TODO
| |   
* | commit 3a4a3793d60dc0991f57f44cfb51b5147f925520
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 23 06:36:44 2008 +0000
| | 
| |     compile fix when LAPACK/ATLAS is not available
| | 
| | M	src/guilib/GUIClassifier.cpp
| |   
* | commit 8e0157f8baf777e670053072e75fc111acc28030
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri May 23 02:09:30 2008 +0000
| | 
| |     - Introduced new section ALMOST DONE.
| | 
| | M	src/TODO
| |   
* | commit d21686d0f21010eeea9b5c02c9241359d4c2ea27
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Thu May 22 20:49:30 2008 +0000
| | 
| |     interface:
| |     - More cleanup for guilib:
| |       + Made CGUIHMM::append_model available for SGInterface (to be used by
| |       CmdLineInterface)
| |       + Removed 'commands' N_COMMENT1 and N_COMMENT2, moving the defines into
| |       CmdLineInterface.
| | 
| | M	src/guilib/GUICommands.h
| | M	src/guilib/GUIHMM.cpp
| | M	src/guilib/GUIHMM.h
| | M	src/interface/CmdLineInterface.cpp
| | M	src/interface/CmdLineInterface.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| |   
* | commit ee4a560001d616b1cfdf05f41a6045104c2e5f43
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Thu May 22 19:13:44 2008 +0000
| | 
| |     interface:
| |     - Cleaned up some stuff in guilib, notably:
| |       + Removed KNN-specific stuff.
| |       + Removed command N_ALPHABET, N_SET_MAX_DIM.
| |       + Removed CGUIDistance::clean_distance.
| |       + Added commands baum_welch_viterbi_train_defined, del_last_kernel,
| |       del_last_features.
| |       + Moved implementation of entropy and relative_entropy into CGUIHMM.
| |     
| |     library:
| |     - Saved a function call in overloaded operator delete.
| | 
| | M	src/guilib/GUICommands.h
| | M	src/guilib/GUIDistance.cpp
| | M	src/guilib/GUIDistance.h
| | M	src/guilib/GUIFeatures.cpp
| | M	src/guilib/GUIFeatures.h
| | M	src/guilib/GUIHMM.cpp
| | M	src/guilib/GUIHMM.h
| | D	src/guilib/GUIKNN.cpp
| | D	src/guilib/GUIKNN.h
| | M	src/guilib/GUIKernel.cpp
| | M	src/guilib/GUIKernel.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| | M	src/lib/memory.cpp
| |   
* | commit 645b32a220dfcc8d84193cd2c9bf8eaad567d5be
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 22 05:57:45 2008 +0000
| | 
| |     updated todo
| | 
| | M	src/TODO
| |   
* | commit 9b9cab6de800a101560dfeac4ff49606b88a7749
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 22 05:01:42 2008 +0000
| | 
| |     updated TODO
| | 
| | M	src/TODO
| |   
* | commit 1ca535f531a8a75412fc667dca66b9a50c1f6d07
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 22 04:48:52 2008 +0000
| | 
| |     we no catch out of memory errors, so move remove from TODO and add to NEWS :)
| | 
| | M	src/NEWS
| | M	src/TODO
| |   
* | commit a279cb5cb72c025b4430d570c325a013dafc7c06
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed May 21 20:23:44 2008 +0000
| | 
| |     memory handling:
| |     - bad_alloc is now caught for modular interfaces.
| |     - Cosmetic fixes in overloaded new.
| | 
| | M	src/lib/ShogunException.i
| | M	src/lib/memory.cpp
| |   
* | commit 8233cacc7581e59f0bb285c5ef44db2eb4ecd095
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 21 10:34:33 2008 +0000
| | 
| |     memory handling exceptions now work for all interfaces
| | 
| | M	src/lib/memory.cpp
| | M	src/lib/memory.h
| |   
* | commit 74cf5319bcab5e94c07d859698bc8762ebe6a8c1
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed May 21 00:18:31 2008 +0000
| | 
| |     interface:
| |     - Improved exception handling for static interfaces.
| |     - Better info string in exception thrown by overloaded operator new.
| | 
| | M	src/interface/CmdLineInterface.cpp
| | M	src/interface/MatlabInterface.cpp
| | M	src/interface/OctaveInterface.cpp
| | M	src/interface/PythonInterface.cpp
| | M	src/interface/RInterface.cpp
| | M	src/lib/memory.cpp
| |   
* | commit af405563fafc407b4bd77ce3432fa53dedc0aeca
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Tue May 20 23:06:47 2008 +0000
| | 
| |     - Big deletion of ASSERT where used unnecessarily in conjuntion with operator
| |       new.
| |     - Also added a couple of whitespace fixes, although this, together with
| |       coding-style fixes should be done for real some time later.
| | 
| | M	src/classifier/Classifier.cpp
| | M	src/classifier/KNN.cpp
| | M	src/classifier/LDA.cpp
| | M	src/classifier/LPBoost.cpp
| | M	src/classifier/LPM.cpp
| | M	src/classifier/LinearClassifier.cpp
| | M	src/classifier/Perceptron.cpp
| | M	src/classifier/PluginEstimate.cpp
| | M	src/classifier/PluginEstimate.h
| | M	src/classifier/SparseLinearClassifier.cpp
| | M	src/classifier/SubGradientLPM.cpp
| | M	src/classifier/svm/CPLEXSVM.cpp
| | M	src/classifier/svm/GMNPSVM.cpp
| | M	src/classifier/svm/GNPPSVM.cpp
| | M	src/classifier/svm/GPBTSVM.cpp
| | M	src/classifier/svm/LibLinear.cpp
| | M	src/classifier/svm/LibSVM.cpp
| | M	src/classifier/svm/LibSVMMultiClass.cpp
| | M	src/classifier/svm/LibSVMOneClass.cpp
| | M	src/classifier/svm/MPDSVM.h
| | M	src/classifier/svm/MultiClassSVM.cpp
| | M	src/classifier/svm/SVM.cpp
| | M	src/classifier/svm/SVMLin.cpp
| | M	src/classifier/svm/SVMOcas.cpp
| | M	src/classifier/svm/SVMSGD.cpp
| | M	src/classifier/svm/SVM_light.cpp
| | M	src/classifier/svm/SubGradientSVM.cpp
| | M	src/classifier/svm/WDSVMOcas.cpp
| | M	src/classifier/svm/WDSVMOcas.h
| | M	src/classifier/svm/gmnplib.cpp
| | M	src/classifier/svm/gnpplib.cpp
| | M	src/classifier/svm/qpbsvmlib.cpp
| | M	src/clustering/Hierarchical.cpp
| | M	src/clustering/KMeans.cpp
| | M	src/clustering/KMeans.h
| | M	src/distance/Distance.cpp
| | M	src/distance/Distance.h
| | M	src/distance/SimpleDistance.h
| | M	src/distance/SparseDistance.h
| | M	src/distance/SparseEuclidianDistance.cpp
| | M	src/distance/StringDistance.h
| | M	src/distributions/histogram/Histogram.cpp
| | M	src/distributions/hmm/HMM.cpp
| | M	src/distributions/hmm/LinearHMM.cpp
| | M	src/features/Alphabet.cpp
| | M	src/features/Alphabet.h
| | M	src/features/FKFeatures.cpp
| | M	src/features/Features.cpp
| | M	src/features/Labels.cpp
| | M	src/features/MindyGramFeatures.cpp
| | M	src/features/RealFeatures.cpp
| | M	src/features/RealFileFeatures.cpp
| | M	src/features/ShortFeatures.cpp
| | M	src/features/SimpleFeatures.h
| | M	src/features/SparseFeatures.h
| | M	src/features/StringFeatures.h
| | M	src/features/TOPFeatures.cpp
| | M	src/features/WordFeatures.cpp
| | M	src/guilib/GUIClassifier.cpp
| | M	src/guilib/GUIFeatures.cpp
| | M	src/guilib/GUIHMM.cpp
| | M	src/guilib/GUIKNN.cpp
| | M	src/guilib/GUIKernel.cpp
| | M	src/guilib/GUIPreProc.cpp
| | M	src/guilib/GUITime.cpp
| | M	src/interface/CmdLineInterface.cpp
| | M	src/interface/MatlabInterface.cpp
| | M	src/interface/OctaveInterface.cpp
| | M	src/interface/PythonInterface.cpp
| | M	src/interface/SGInterface.cpp
| | M	src/kernel/Chi2Kernel.cpp
| | M	src/kernel/CombinedKernel.cpp
| | M	src/kernel/CombinedKernel.h
| | M	src/kernel/CommUlongStringKernel.cpp
| | M	src/kernel/CommWordStringKernel.cpp
| | M	src/kernel/CustomKernel.cpp
| | M	src/kernel/CustomKernel.h
| | M	src/kernel/FixedDegreeStringKernel.cpp
| | M	src/kernel/GaussianKernel.cpp
| | M	src/kernel/GaussianShiftKernel.cpp
| | M	src/kernel/HistogramWordKernel.cpp
| | M	src/kernel/Kernel.cpp
| | M	src/kernel/Kernel.h
| | M	src/kernel/KernelMachine.cpp
| | M	src/kernel/LinearByteKernel.cpp
| | M	src/kernel/LinearWordKernel.cpp
| | M	src/kernel/LocalAlignmentStringKernel.cpp
| | M	src/kernel/LocalityImprovedStringKernel.cpp
| | M	src/kernel/MindyGramKernel.cpp
| | M	src/kernel/PolyKernel.cpp
| | M	src/kernel/PolyMatchStringKernel.cpp
| | M	src/kernel/PyramidChi2.cpp
| | M	src/kernel/SalzbergWordKernel.cpp
| | M	src/kernel/SigmoidKernel.cpp
| | M	src/kernel/SimpleKernel.h
| | M	src/kernel/SparseGaussianKernel.cpp
| | M	src/kernel/SparseKernel.h
| | M	src/kernel/SparsePolyKernel.cpp
| | M	src/kernel/StringKernel.h
| | M	src/kernel/WeightedCommWordStringKernel.cpp
| | M	src/kernel/WeightedDegreePositionStringKernel.cpp
| | M	src/kernel/WeightedDegreePositionStringKernel.h
| | M	src/kernel/WeightedDegreeStringKernel.cpp
| | M	src/kernel/WordMatchKernel.cpp
| | M	src/lib/Array.h
| | M	src/lib/Cache.h
| | M	src/lib/Cplex.cpp
| | M	src/lib/File.cpp
| | M	src/lib/Mathematics.cpp
| | M	src/lib/Mathematics.h
| | M	src/lib/Trie.cpp
| | M	src/lib/lapack.cpp
| | M	src/preproc/LogPlusOne.cpp
| | M	src/preproc/NormDerivativeLem3.cpp
| | M	src/preproc/NormOne.cpp
| | M	src/preproc/PCACut.cpp
| | M	src/preproc/PruneVarSubMean.cpp
| | M	src/preproc/SortUlongString.cpp
| | M	src/preproc/SortWord.cpp
| | M	src/preproc/SortWordString.cpp
| | M	src/regression/KRR.cpp
| | M	src/regression/svr/LibSVR.cpp
| | M	src/regression/svr/SVR_light.cpp
| | M	src/structure/DynProg.cpp
| | M	src/structure/Plif.cpp
| | M	src/structure/PlifArray.cpp
| |   
* | commit 99f625c945063cac52d600eec25f1eed9a794f8d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 20 10:15:23 2008 +0000
| | 
| |     rename new memory... and *sigh* use std new
| | 
| | M	src/base/SGObject.cpp
| | M	src/classifier/svm/SVM_libsvm.cpp
| | M	src/interface/OctaveInterface.cpp
| | M	src/interface/OctaveInterface.h
| | M	src/lib/common.h
| | A	src/lib/memory.cpp
| | A	src/lib/memory.h
| | D	src/lib/new.cpp
| | D	src/lib/new.h
| |   
* | commit 2adc2559c8916e43b263f9fea0e209154af22e73
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 20 06:20:57 2008 +0000
| | 
| |     custom new (seems to work here)
| | 
| | M	src/base/SGObject.cpp
| | A	src/lib/new.cpp
| | A	src/lib/new.h
| |   
* | commit 49bc5f1e23d3209786d0371d593f6afa15db0d3c
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Mon May 19 17:22:20 2008 +0000
| | 
| |     TODO:
| |     - Marked items to take charge of for next release.
| | 
| | M	src/TODO
| |   
* | commit f30892c45bea8082cd899284c5a0d8dc7c7eae59
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun May 18 07:39:25 2008 +0000
| | 
| |     fix spelling mistake in cache and add some assertions to MPD
| | 
| | M	src/classifier/svm/MPDSVM.cpp
| | M	src/lib/Cache.h
| |   
* | commit 75471a4399a3f8e5dc2a998c07c10cb5e30098d9
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat May 17 09:22:44 2008 +0000
| | 
| |     update configure to also use 'native' as march/mcpu flag
| | 
| | M	src/configure
| |   
* | commit d2d08f4517d54a7da8ad5f08dd4662161744eb68
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat May 17 08:47:26 2008 +0000
| | 
| | M	src/.authors
| |   
* | commit 847a8859302e0b7b6af47c15dd2608c1265456f1
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat May 17 08:47:11 2008 +0000
| | 
| |     update list of authors
| | 
| | M	doc/pages/Authors.mainpage
| | D	doc/pages/authors
| |   
* | commit 0ff3d0ab2e8d8f161e34f3d21e52259162921564
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 16 20:21:28 2008 +0000
| | 
| |     more ideas
| | 
| | M	src/TODO
| |   
* | commit 542778651cfec636f81f6558a5ed0955ccb2280c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 16 19:23:45 2008 +0000
| | 
| |     this should fix yaroslavs latest and greatest memory leak :-)
| | 
| | M	src/classifier/svm/pr_loqo.cpp
| |   
* | commit 9337a1efd97fe2c6778da4f063f768d022170a2c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 16 19:12:53 2008 +0000
| | 
| |     - add debug code for initing subkernels of combined kernel
| |     - add command to enable speedup of commwordstringkernel (useful for whole genome predictions)
| | 
| | M	src/guilib/GUICommands.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| | M	src/kernel/CombinedKernel.cpp
| |   
* | commit 04ff9dcb3c2a02306e011160b15596b562cc3c64
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 16 16:57:49 2008 +0000
| | 
| |     fall back to the matlab prompt on error instead of ignoring errors (though they were printed)
| | 
| | M	src/interface/MatlabInterface.cpp
| |   
* | commit 0f96e2e8ff02c2a04ab16781ac7cafc4019cfb20
|/  Author: Yaroslav Halchenko <yoh@psychology.rutgers.edu>
|   Date:   Fri May 16 15:14:44 2008 +0000
|   
|       BF: some SG_PRINT and printf statements into SG_INFO and SG_DEBUG
|   
|   M	src/distance/Distance.cpp
|   M	src/features/FKFeatures.cpp
|   M	src/features/TOPFeatures.cpp
|   M	src/kernel/Kernel.cpp
|   M	src/kernel/WeightedDegreeStringKernel.cpp
|   M	src/preproc/PCACut.cpp
|  
* commit 4c8c7ea1c9e2bf72199d63600bb6d3bf387ad2f5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 16 08:26:44 2008 +0000
| 
|     add cheng to authors, fix footer and add a comment to remind me to run make ChangeLog before actually doing a release
| 
| M	Makefile
| M	doc/pages/shogun_footer.html
| M	src/.authors
| M	src/TODO
|  
* commit e31348a38f1d45299d1e8081430b84ca6c78b122
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 15 22:17:15 2008 +0000
| 
|     brain storming idea
| 
| M	src/TODO
|  
* commit 3f55657188ccf55d3e9269f27e3107d5d093a9ab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 15 20:22:35 2008 +0000
| 
|     Preparing for new Release shogun_0.6.2
| 
| M	doc/Doxyfile
| M	r/Makefile
| M	r/sg/DESCRIPTION
|  
* commit 859a1d6a69462b2812edcb65eeee2d77f2801117
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 15 20:21:12 2008 +0000
| 
|     testsuite:
|     - Fixes in FixedDegreeString required to regenerate some test cases.
| 
| M	testsuite/data/kernel/Combined_3_10_60_LinearString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
|  
* commit 4e3ec6f1e7ef77fd6735e9225f8772cd686d8ad6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 15 20:18:38 2008 +0000
| 
|     features:
|     - Alphabet un/refing bug squished.
| 
| M	src/features/StringFeatures.h
|  
* commit c6280eac65a5e26643ef36e939833f190ba6a1b9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 15 19:55:45 2008 +0000
| 
|     fix delete alphabet/missing SG_REF bug
| 
| M	src/features/StringFeatures.h
|  
* commit 5dc18549e46d3c455a4bc981b23d6cdd8b430afb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 15 19:40:35 2008 +0000
| 
|     assert that alphabet is not NULL
| 
| M	src/features/Alphabet.cpp
|  
* commit e50a2f04905633f23a3609e381770cf954160965
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 15 19:40:08 2008 +0000
| 
|     update news, fix directory name R -> r
| 
| M	r/Makefile
| M	src/NEWS
|  
* commit 01c6d71d77b8d9cccf572aaefd4a606573c4d34b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 15 19:19:05 2008 +0000
| 
|     transpose bug fix
| 
| M	src/lib/File.cpp
|  
* commit 045672a82d77de6ef4aa31b4ba380f1822df5cdc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 15 17:14:06 2008 +0000
| 
|     exit with code 1 instead of throwing exception when error occurs on cmdline if
| 
| A	cmdline/check_examples.sh
| M	cmdline/examples/libsvm.sg
| M	src/NEWS
| M	src/interface/CmdLineInterface.cpp
|  
* commit 85e2348f1eb556a873a44e4aa638a29417c7805f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 15 10:51:58 2008 +0000
| 
|     add (working!) libsvm example converted from octave
| 
| A	cmdline/examples/libsvm.sg
|  
* commit 14706f1fa0e7d2625bd46d7977f6c652fe5853fa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 15 10:51:33 2008 +0000
| 
|     -fix yet another overflow bug in string features+cmdline if
|     -fix parsing of commands (with return arguments but no parameters) - occured when executing scripts only
|     -implement reading and writing of vectors
|     -rename test scripts to have .sg suffix
|     -add bigger test dataset
| 
| A	cmdline/examples/data/fm_test_real.dat
| A	cmdline/examples/data/fm_train_real.dat
| A	cmdline/examples/data/label_test.dat
| A	cmdline/examples/data/label_train.dat
| D	cmdline/examples/test.cmd
| A	cmdline/examples/test.sg
| M	src/features/StringFeatures.h
| M	src/interface/CmdLineInterface.cpp
| M	src/lib/File.cpp
|  
* commit 01d1fa3c51ac8aa7a54e68befaa53d78441537bf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 15 10:10:10 2008 +0000
| 
|     -fix bug for reading sparse features in cmdline if (1st dimension was always not read)
|     -use SG_ERROR if command is not known
|     -add some more examples / datasets:
|     
|     status:
|     	- things work from cmdline but lhs args not from file (why??)
|     	- string features: reading last line still broken (for strings not of same length)
| 
| M	cmdline/examples/data/fm_real.dat
| M	cmdline/examples/data/fm_stringchar_dna.dat
| A	cmdline/examples/data/fm_stringchar_dnamatrix.dat
| M	cmdline/examples/test.cmd
| M	src/interface/SGInterface.cpp
| M	src/lib/File.cpp
|  
* commit 39f9b1cb0657efdcf5e9a77ec009ddbd69be9def
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 15 06:34:35 2008 +0000
| 
|     fix writing of char features and sparse features
|     fix a bug in reading charstring features (forgotten overflow buffer *ugh*)
| 
| M	src/features/StringFeatures.h
| M	src/lib/File.cpp
|  
* commit c085ee8400b7928350e52fa1c43a1502800400fb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 14 22:34:27 2008 +0000
| 
|     remove now (that the alphabet is a protected member variable) the obsoleted get lhs features (which was used to determine the alphabet only)
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit f59c2ce9bb37cd13d979fb7669ae2b2e2f6cbd11
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed May 14 21:26:55 2008 +0000
| 
|     examples:
|     - Added a few pre-generated feature matrices to examples for command-line
|       interface.
| 
| A	cmdline/examples/data/fm_real.dat
| A	cmdline/examples/data/fm_real_sparse.dat
| A	cmdline/examples/data/fm_stringchar_dna.dat
|  
* commit c02680e3abb1903dacaea0f0df526b32da3e221e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed May 14 21:26:11 2008 +0000
| 
|     interface:
|     - Added support for writing STRING CHAR features and SPARSE REAL. Dunno if
|       it works, though. reading STRING CHAR is b0rked atm and not sure about
|       SPARSE REAL.
| 
| M	src/interface/CmdLineInterface.cpp
| M	src/lib/File.cpp
| M	src/lib/File.h
|  
* commit 41509d7a21fcbb27430bbb202bda2222fa39cd3f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed May 14 19:41:52 2008 +0000
| 
|     kernel:
|     - Got rid of two compiler warnings about unused variables.
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit 01c357d2b4e3eb2d20d2bf500f604930f3a1a755
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed May 14 19:38:15 2008 +0000
| 
|     interface:
|     - Added newline to error message in SGInterface.
|     - Removed the necessity of spaces before and after equal sign for lhs/rhs in
|       command-line interface.
| 
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 07ab6ddbc477ecbfedaa748b6cc988ca1cccca34
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 14 19:18:31 2008 +0000
| 
|     Finally found the bug: get_alphabet() did a SG_REF for the modular interfaces
|     but not for the static ones. This function was heavily used when converting DNA
|     to 0,1,2,3 in the core loops of the string kernels, thus causing a massive
|     slowdown for them (factor 5-30).
|     
|     Also modfied the WD kernels to work with alphabets != DNA/RNA (but disable
|     linadd/batch comp. in this case + add a couple of assertions to trap misuse)
| 
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
|  
* commit 0cb28c8538cbcdb7c0dceb141f20da0876715825
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 14 10:31:02 2008 +0000
| 
|     remove typedefs, use plain struct FOO only (otherwise older swig versions don't understand the %ignore FOO)
| 
| M	src/classifier/svm/SVM_light.h
|  
* commit 6a12c65d3634978a4a9f73b7be9ff9d41828c8a4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 14 09:23:44 2008 +0000
| 
|     -also parse lhs
|     -simple ascii reading for cmdline interface should work for simple/sparse/string features now
|     -simple ascii writing for dense real features
| 
| M	cmdline/examples/test.cmd
| M	src/features/StringFeatures.h
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/kernel/Kernel.h
| M	src/lib/File.cpp
| M	src/lib/File.h
|  
* commit 3469d7bccdea0cbce43481e76a2f5577321edf5f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed May 14 03:52:18 2008 +0000
| 
|     interface:
|     - Implemented CFile::read_real_valued_dense() for starters. There might be a
|       more elegent way, though.
| 
| M	src/interface/CmdLineInterface.cpp
| M	src/lib/File.cpp
| M	src/lib/File.h
|  
* commit 6db5e90d61ca0a62e713aa3c293691c54d42a656
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 13 20:55:39 2008 +0000
| 
|     drafty i/o
| 
| M	src/lib/File.cpp
| M	src/lib/File.h
|  
* commit f7326eb9d2289ddeb50c6d9a9a7dad118e88193c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue May 13 18:36:39 2008 +0000
| 
|     interface:
|     - Little compile warning fix.
| 
| M	src/interface/CmdLineInterface.cpp
|  
* commit d566dc40829c24b6091c3dbb4aadfed187fa13c8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 13 12:51:08 2008 +0000
| 
|     add readline completion and filetype guessing (based on 1st 1024 bytes) if signature is not present
| 
| M	src/NEWS
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/SGInterface.cpp
|  
* commit eaffd890bda3fc124970e757062e155357520525
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue May 13 04:16:30 2008 +0000
| 
|     interface:
|     - Poked at reading features from files...
| 
| M	src/interface/CmdLineInterface.cpp
|  
* commit 96daa6b3556a0ad34704ed60141b6881d8b21a33
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 12 18:53:36 2008 +0000
| 
|     - remove erraneous readline part from SGInterface
|     - delimit also on '\t\n'
|     - don't exit if shogun exception happens on interactive interface (merely display an error) and only quit on ctrl+D or quit/exit
| 
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/SGInterface.cpp
|  
* commit ccc2b4a6089fd4d004b67cfe76d3595effae649a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 12 11:45:11 2008 +0000
| 
|     recover code from GUI/TextGUI to get interactive cmdline and tcp interface to work again
| 
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/interface/SGInterface.cpp
|  
* commit aa33c31f2b9b6375d1b969baac474c0918b319a4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 12 04:53:09 2008 +0000
| 
|     more documentation and compile fix for cmdline if
| 
| M	doc/Doxyfile
| M	src/interface/CmdLineInterface.cpp
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/LinearKernel.h
| M	src/kernel/PolyKernel.h
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparsePolyKernel.h
|  
* commit 42dff850bba951a63caa8c6ba380c09ff434fb89
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 10 08:39:08 2008 +0000
| 
|     add some documentation for these kernels
| 
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.h
| M	src/kernel/DiagKernel.h
| M	src/kernel/DistanceKernel.h
|  
* commit c32c71a26051cde7a3128ea5beb431a0836c4b2a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat May 10 00:26:41 2008 +0000
| 
|     interface:
|     - Command line interface can read scalars now and is a bit more relaxed about
|       the command file's contents wrt comments and newlines.
|     - Added section cmdline and one testing command file in its subsection
|       examples.
| 
| A	cmdline/examples/test.cmd
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| D	src/sg.m
|  
* commit ecbe6e2458f37b3a4c47c46b7e165ec4cc515b64
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri May 9 23:56:41 2008 +0000
| 
|     library:
|     - Extended class CIO by method skip_blanks to skip spaces and tabs in strings.
| 
| M	src/lib/io.cpp
| M	src/lib/io.h
|  
* commit b511d9a1d9cc74c1fb2a0573f92360c50ac80d76
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri May 9 23:31:06 2008 +0000
| 
|     interface:
|     - Improved implementation of command '!' (system) to make it suitable for
|       command line interface and increase flexibility for other interfaces - you
|       can now pass several arguments to the command.
| 
| M	src/interface/SGInterface.cpp
|  
* commit 4c1a1a89211e9b2c770b1796e31e91d89aaf1a1a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri May 9 23:00:37 2008 +0000
| 
|     interface:
|     - Fixed little bug in help string for command 'loglevel'.
| 
| M	src/interface/SGInterface.cpp
|  
* commit a1f7e299eca0626b5921c394e29b46b38ac80046
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri May 9 21:50:33 2008 +0000
| 
|     interface:
|     - Made command-line interface operational, it does not do anything at the
|       moment, though.
|     io:
|     - Added some ifdef WIN32 around CSignal::unset_handler() in io::message().
| 
| M	src/configure
| A	src/interface/CmdLineInterface.cpp
| A	src/interface/CmdLineInterface.h
| M	src/interface/SGInterface.cpp
| M	src/lib/io.cpp
|  
* commit 4e1fe6737e9248dda6f0822cfdce6505abc2d883
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 9 12:55:43 2008 +0000
| 
|     remove debug code
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 34c705fc85078d5c8667c2c8f78e931d8330de77
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 9 12:48:49 2008 +0000
| 
|     init kernel caches when multiple kernels are in use for svm light
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit be127aeb82ab1376df0f9d2bf43684228e3a96b7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 9 10:30:04 2008 +0000
| 
|     - create symlinks for octave and matlab and introduce make check-examples to
|     check examples for current interface.
|     - make spec/wd/lik kernel examples run non interactively
|     - don't even try to run examples on matlab (as it doesn't give reasonable return codes!)
|     - speed up modular R by precompiling R files (and loading the ones in the examples)
|     - fix distribution octave-modular example
|     
|     AFAICT all examples for all interface run through.
| 
| A	matlab
| M	matlab_and_octave/check_examples.sh
| M	matlab_and_octave/examples/lik_kernel.m
| M	matlab_and_octave/examples/spec_kernel.m
| M	matlab_and_octave/examples/wd_kernel.m
| A	octave
| M	octave-modular/examples/all_distribution.m
| M	r-modular/examples/all_classifier.R
| M	r-modular/examples/all_clustering.R
| M	r-modular/examples/all_distance.R
| M	r-modular/examples/all_distribution.R
| M	r-modular/examples/all_kernels.R
| M	r-modular/examples/all_preproc.R
| M	r-modular/examples/all_regression.R
| M	r-modular/examples/first_shot.R
| M	src/Makefile
|  
* commit 959704f746cc7424fa0b0ee36249b994846749e0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 9 09:14:04 2008 +0000
| 
|     add tests to also run examples
| 
| A	matlab_and_octave/check_examples.sh
| A	octave-modular/check_examples.sh
| A	python-modular/check_examples.sh
| M	python-modular/examples/numpy_commands.py
| A	python/check_examples.sh
| A	r-modular/check_examples.sh
| A	r/check_examples.sh
| M	src/Makefile
|  
* commit fabff1e72db8f2bdb76e38a31ccbced47181e530
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 8 20:27:39 2008 +0000
| 
|     fix crasher when precompute is true
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit f55c2337656b2487060d4b235588237c8fb12b40
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 8 19:54:38 2008 +0000
| 
|     interface/examples:
|     - Added commands train_clustering, new_clustering, get_clustering and modified
|       examples accordingly.
| 
| M	matlab_and_octave/examples/all_clustering.m
| M	matlab_and_octave/examples/graphical/cluster_hierarchical.m
| M	matlab_and_octave/examples/graphical/cluster_kmeans.m
| M	python/examples/all_clustering.py
| M	r/examples/all_clustering.R
| M	src/guilib/GUICommands.h
| M	src/interface/SGInterface.cpp
|  
* commit 65a1158b0731a0465ee9880aaf5fa9f54dee7f55
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 8 19:35:15 2008 +0000
| 
|     examples:
|     - Removed superflous example.
| 
| D	matlab_and_octave/examples/stringfeatures.m
|  
* commit 8f7b5d8f756a4b9ded051ed15e164126bfd02a92
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 8 19:33:34 2008 +0000
| 
|     examples:
|     - Replaced 'svm_train' by 'train_classifier' and 'svm_classify' by 'classify'.
|     - Replaced a few more commands related to regressions which were overlooked in
|       previous check-in.
| 
| M	matlab_and_octave/examples/all_classifier.m
| M	matlab_and_octave/examples/graphical/mkl_pseudo_dna.m
| M	matlab_and_octave/examples/graphical/spec_interp.m
| M	matlab_and_octave/examples/graphical/svm_classification.m
| M	matlab_and_octave/examples/graphical/svm_multiclass.m
| M	matlab_and_octave/examples/graphical/svr_regression.m
| M	matlab_and_octave/examples/graphical/test_gnpp_svm.m
| M	matlab_and_octave/examples/graphical/test_poim_wds.m
| M	matlab_and_octave/examples/graphical/test_regression.m
| M	matlab_and_octave/examples/graphical/test_regression_mkl.m
| M	matlab_and_octave/examples/graphical/test_spec_interp.m
| M	matlab_and_octave/examples/graphical/test_svm_multiclass.m
| M	matlab_and_octave/examples/graphical/test_wd_wds_parallel.m
| M	matlab_and_octave/examples/graphical/wds_consensus.m
| M	matlab_and_octave/examples/graphical/wds_shift_interp.m
| M	matlab_and_octave/examples/lik_kernel.m
| M	matlab_and_octave/examples/mkl_classify_christmas_star.m
| M	matlab_and_octave/examples/mkl_regression_3sine_waves.m
| M	matlab_and_octave/examples/mkl_regression_sine.m
| M	matlab_and_octave/examples/spec_kernel.m
| M	matlab_and_octave/examples/tests/test_combined.m
| M	matlab_and_octave/examples/tests/test_combined2.m
| M	matlab_and_octave/examples/tests/test_complex_scenario.m
| M	matlab_and_octave/examples/tests/test_custom_kernel.m
| M	matlab_and_octave/examples/tests/test_kernel_optimization.m
| M	matlab_and_octave/examples/tests/test_linadd.m
| M	matlab_and_octave/examples/tests/test_mkl.m
| M	matlab_and_octave/examples/tests/test_mkl_svr.m
| M	matlab_and_octave/examples/tests/test_mkl_svr_wrapper.m
| M	matlab_and_octave/examples/tests/test_ocas_normalization.m
| M	matlab_and_octave/examples/tests/test_one_class_svm.m
| M	matlab_and_octave/examples/tests/test_regression_linadd.m
| M	matlab_and_octave/examples/tests/test_sliding_window.m
| M	matlab_and_octave/examples/tests/test_spec_consensus.m
| M	matlab_and_octave/examples/tests/test_svmlight_libsvm.m
| M	matlab_and_octave/examples/tests/test_svrlight_libsvr.m
| M	matlab_and_octave/examples/tests/test_wd_kernel.m
| M	matlab_and_octave/examples/tests/test_wd_linadd.m
| M	matlab_and_octave/examples/tests/test_wds_consensus.m
| M	matlab_and_octave/examples/tests/test_wds_kernel.m
| M	matlab_and_octave/examples/tests/test_wdshift_position_weights.m
| M	matlab_and_octave/examples/tests/test_weighted_spectrum.m
| M	matlab_and_octave/examples/wd_kernel.m
| M	matlab_and_octave/examples/wds_kernel.m
| M	python/examples/all_classifier.py
| M	python/examples/graphical/svm_classificaton.py
| M	python/examples/graphical/svr_regression.py
| M	python/examples/test_mkl.py
| M	r/examples/all_classifier.R
| M	r/examples/graphical/svm_classification.R
| M	r/examples/graphical/svr_regression.R
|  
* commit d0def506c526421d4058b952ed93662811960efd
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 8 18:57:41 2008 +0000
| 
|     interface:
|     - Added new commands new_regression and train_regression (alias to
|       new_classifier/train_classifier) and adjusted examples.
|     - Completely enabled KRR in examples.
| 
| M	matlab_and_octave/examples/all_regression.m
| M	python/examples/all_regression.py
| M	r/examples/all_regression.R
| M	src/guilib/GUICommands.h
| M	src/interface/SGInterface.cpp
|  
* commit b7872ebc80eee288542be63fdc2cb58627d0246f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 8 18:53:49 2008 +0000
| 
|     add some progress to libsvm
| 
| M	src/classifier/svm/SVM_libsvm.cpp
|  
* commit e584a7a8b9e475b9ee972db5625f8b9522431983
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 8 18:23:19 2008 +0000
| 
|     interface:
|     - Fixed KRR in static interface.
| 
| M	src/guilib/GUIClassifier.cpp
| M	src/interface/SGInterface.cpp
| M	src/regression/KRR.cpp
|  
* commit 5eb49d0ec9468ea812cf0f571658568cbcafa9b8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed May 7 23:08:16 2008 +0000
| 
|     testsuite:
|     - Regenerated testdata.
| 
| M	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_1.m
| M	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_16.m
| M	testsuite/data/classifier/GPBTSVM_001_00001_Linear_30_15_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1e-05_Linear_15_15_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1e-05_Linear_30_15_1.m
| M	testsuite/data/classifier/LibSVM_15_001_1e-05_Gaussian_15_1.m
| M	testsuite/data/classifier/SVMLin_023_1_1e-05_True.m
| M	testsuite/data/classifier/SVMLin_30_16_00001_True.m
| M	testsuite/data/classifier/SVMLin_30_1_00001_True.m
| M	testsuite/data/classifier/SVMLin_30_1_1e-05_True.m
| M	testsuite/data/classifier/SVMOcas_15_1_1e-05_False.m
| M	testsuite/data/classifier/SVMOcas_30_16_00001_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_00001_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_0017_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_023_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05_False.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| M	testsuite/data/distance/SparseEuclidianDistance.m
| M	testsuite/data/distribution/HMM_4_60_6_3_0_1e-10_False_CUBE_1.m
| M	testsuite/data/kernel/Poly_4_6_0_8_3_FK_True_False_01_1_CUBE_1_False.m
| M	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_True_False_01_1_CUBE_1_False.m
| M	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_30_1_15_1e-05_Gaussian_001.m
|  
* commit fa100a83f5871777a153f1965376264c97049180
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed May 7 23:07:36 2008 +0000
| 
|     testsuite:
|     - Seemingly found a work-around to problem with randomness testgenerator vs.
|       tester.
| 
| M	testsuite/generator/__init__.py
| M	testsuite/generator/dataop.py
|  
* commit 1fcea2ebb8e0ad9a5631d2d3364176c9994f6968
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed May 7 21:43:14 2008 +0000
| 
|     testsuite:
|     - Updated generator to reflect changes made within Shogun.
| 
| M	testsuite/generator/clustering.py
| M	testsuite/generator/featop.py
| M	testsuite/generator/kernel.py
|  
* commit be7d03f994f241ce77e63bca1f5627d2265067b1
| Author: Yaroslav Halchenko <yoh@psychology.rutgers.edu>
| Date:   Wed May 7 20:02:51 2008 +0000
| 
|     printf -> SG_S{WARNING,ERROR} withing svm/gpm.cpp
| 
| M	src/classifier/svm/gpm.cpp
|  
* commit b5e150797b4f68dfe0b38ad92e190dbbca90c3bc
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue May 6 22:50:06 2008 +0000
| 
|     documentation:
|     - Possibly improved issue with CFeatures in swig-autodoc-generation.
| 
| M	src/.scrub_docstrings.py
|  
* commit 81a549be6454eac2677efb8a6b6bc7a82c85e213
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue May 6 21:38:27 2008 +0000
| 
|     examples:
|     - Converted examples for R interface.
| 
| M	r/examples/all_classifier.R
| M	r/examples/all_clustering.R
| M	r/examples/all_distance.R
| M	r/examples/all_distribution.R
| M	r/examples/all_kernels.R
| M	r/examples/all_preproc.R
| M	r/examples/all_regression.R
| M	r/examples/graphical/hmm.R
| M	r/examples/graphical/svm_classification.R
| M	r/examples/graphical/svr_regression.R
|  
* commit 87a4d92257c55156a15782a36164317f40079785
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue May 6 19:28:36 2008 +0000
| 
|     examples:
|     - Converted examples for Python interface.
| 
| M	python/examples/all_classifier.py
| M	python/examples/all_clustering.py
| M	python/examples/all_distance.py
| M	python/examples/all_distribution.py
| M	python/examples/all_kernels.py
| M	python/examples/all_preproc.py
| M	python/examples/all_regression.py
| M	python/examples/graphical/svm_classificaton.py
| M	python/examples/graphical/svr_regression.py
| M	python/examples/test_mkl.py
|  
* commit 65e0d0b4dce3a0401c1faa9cad987859d7d432e0
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue May 6 19:28:08 2008 +0000
| 
|     interface:
|     - Fixed order of parameters in Poly kernel.
|     - Extended help string of train_classifier to include optional parameters.
| 
| M	src/interface/SGInterface.cpp
|  
* commit d69bc152baede3cbb567c3c93556ac586953b0b3
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue May 6 18:15:59 2008 +0000
| 
|     interface:
|     - Found a few syntax errors in CPLEX-related examples when run through Matlab.
| 
| M	matlab_and_octave/examples/graphical/mkl_pseudo_dna.m
| M	matlab_and_octave/examples/graphical/test_regression_mkl.m
| M	matlab_and_octave/examples/tests/test_mkl.m
|  
* commit 727693327cc45e92d977f18c7269b8093691a83b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue May 6 18:14:53 2008 +0000
| 
|     interface:
|     - Improved bool handling in Matlab interface.
| 
| M	src/interface/MatlabInterface.cpp
|  
* commit 086ffb1118653e4304bed0a4a0dbc6086b35f681
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon May 5 23:41:50 2008 +0000
| 
|     examples:
|     - Converted examples for Matlab and Octave to new format; moved old examples
|       into directory 'legacy'.
| 
| M	matlab_and_octave/examples/all_classifier.m
| M	matlab_and_octave/examples/all_clustering.m
| M	matlab_and_octave/examples/all_distance.m
| M	matlab_and_octave/examples/all_distribution.m
| M	matlab_and_octave/examples/all_kernels.m
| M	matlab_and_octave/examples/all_preproc.m
| M	matlab_and_octave/examples/all_regression.m
| M	matlab_and_octave/examples/graphical/cluster_hierarchical.m
| M	matlab_and_octave/examples/graphical/cluster_kmeans.m
| M	matlab_and_octave/examples/graphical/entropy.m
| M	matlab_and_octave/examples/graphical/hmm.m
| M	matlab_and_octave/examples/graphical/lda_classification.m
| M	matlab_and_octave/examples/graphical/local_alignment_kernel.m
| M	matlab_and_octave/examples/graphical/mkl_pseudo_dna.m
| M	matlab_and_octave/examples/graphical/spec_interp.m
| M	matlab_and_octave/examples/graphical/svm_classification.m
| M	matlab_and_octave/examples/graphical/svm_multiclass.m
| M	matlab_and_octave/examples/graphical/svr_regression.m
| M	matlab_and_octave/examples/graphical/test_gnpp_svm.m
| M	matlab_and_octave/examples/graphical/test_poim_wds.m
| M	matlab_and_octave/examples/graphical/test_regression.m
| M	matlab_and_octave/examples/graphical/test_regression_mkl.m
| M	matlab_and_octave/examples/graphical/test_spec_interp.m
| M	matlab_and_octave/examples/graphical/test_svm_multiclass.m
| M	matlab_and_octave/examples/graphical/test_wd_wds_parallel.m
| M	matlab_and_octave/examples/graphical/wds_consensus.m
| M	matlab_and_octave/examples/graphical/wds_shift_interp.m
| A	matlab_and_octave/examples/legacy/all_classifier.m
| A	matlab_and_octave/examples/legacy/all_clustering.m
| A	matlab_and_octave/examples/legacy/all_distance.m
| A	matlab_and_octave/examples/legacy/all_distribution.m
| A	matlab_and_octave/examples/legacy/all_kernels.m
| A	matlab_and_octave/examples/legacy/all_preproc.m
| A	matlab_and_octave/examples/legacy/all_regression.m
| A	matlab_and_octave/examples/legacy/graphical/cluster_hierarchical.m
| A	matlab_and_octave/examples/legacy/graphical/cluster_kmeans.m
| A	matlab_and_octave/examples/legacy/graphical/entropy.m
| A	matlab_and_octave/examples/legacy/graphical/hmm.m
| A	matlab_and_octave/examples/legacy/graphical/lda_classification.m
| A	matlab_and_octave/examples/legacy/graphical/local_alignment_kernel.m
| A	matlab_and_octave/examples/legacy/graphical/mkl_pseudo_dna.m
| A	matlab_and_octave/examples/legacy/graphical/spec_interp.m
| A	matlab_and_octave/examples/legacy/graphical/svm_classification.m
| A	matlab_and_octave/examples/legacy/graphical/svm_multiclass.m
| A	matlab_and_octave/examples/legacy/graphical/svr_regression.m
| A	matlab_and_octave/examples/legacy/graphical/test_gnpp_svm.m
| A	matlab_and_octave/examples/legacy/graphical/test_poim_wds.m
| A	matlab_and_octave/examples/legacy/graphical/test_regression.m
| A	matlab_and_octave/examples/legacy/graphical/test_regression_mkl.m
| A	matlab_and_octave/examples/legacy/graphical/test_spec_interp.m
| A	matlab_and_octave/examples/legacy/graphical/test_svm_multiclass.m
| A	matlab_and_octave/examples/legacy/graphical/test_wd_wds_parallel.m
| A	matlab_and_octave/examples/legacy/graphical/wds_consensus.m
| A	matlab_and_octave/examples/legacy/graphical/wds_shift_interp.m
| A	matlab_and_octave/examples/legacy/liblinear.m
| A	matlab_and_octave/examples/legacy/lik_kernel.m
| A	matlab_and_octave/examples/legacy/lpboost.m
| A	matlab_and_octave/examples/legacy/lpm.m
| A	matlab_and_octave/examples/legacy/markov_chain.m
| A	matlab_and_octave/examples/legacy/mkl_classify_christmas_star.m
| A	matlab_and_octave/examples/legacy/mkl_regression_3sine_waves.m
| A	matlab_and_octave/examples/legacy/mkl_regression_sine.m
| A	matlab_and_octave/examples/legacy/spec_kernel.m
| A	matlab_and_octave/examples/legacy/string_features.m
| A	matlab_and_octave/examples/legacy/stringfeatures.m
| A	matlab_and_octave/examples/legacy/svmocas.m
| A	matlab_and_octave/examples/legacy/svmsgd.m
| A	matlab_and_octave/examples/legacy/tests/test_classifier.m
| A	matlab_and_octave/examples/legacy/tests/test_combined.m
| A	matlab_and_octave/examples/legacy/tests/test_combined2.m
| A	matlab_and_octave/examples/legacy/tests/test_complex_scenario.m
| A	matlab_and_octave/examples/legacy/tests/test_custom_kernel.m
| A	matlab_and_octave/examples/legacy/tests/test_interface.m
| A	matlab_and_octave/examples/legacy/tests/test_kernel_optimization.m
| A	matlab_and_octave/examples/legacy/tests/test_knn.m
| A	matlab_and_octave/examples/legacy/tests/test_l2svm.m
| A	matlab_and_octave/examples/legacy/tests/test_linadd.m
| A	matlab_and_octave/examples/legacy/tests/test_linear_methods.m
| A	matlab_and_octave/examples/legacy/tests/test_mkl.m
| A	matlab_and_octave/examples/legacy/tests/test_mkl_svr.m
| A	matlab_and_octave/examples/legacy/tests/test_mkl_svr_wrapper.m
| A	matlab_and_octave/examples/legacy/tests/test_ocas_normalization.m
| A	matlab_and_octave/examples/legacy/tests/test_one_class_svm.m
| A	matlab_and_octave/examples/legacy/tests/test_regression_linadd.m
| A	matlab_and_octave/examples/legacy/tests/test_sliding_window.m
| A	matlab_and_octave/examples/legacy/tests/test_sparse.m
| A	matlab_and_octave/examples/legacy/tests/test_sparse_methods.m
| A	matlab_and_octave/examples/legacy/tests/test_spec_consensus.m
| A	matlab_and_octave/examples/legacy/tests/test_subgradsvm.m
| A	matlab_and_octave/examples/legacy/tests/test_svmlight_libsvm.m
| A	matlab_and_octave/examples/legacy/tests/test_svrlight_libsvr.m
| A	matlab_and_octave/examples/legacy/tests/test_wd_kernel.m
| A	matlab_and_octave/examples/legacy/tests/test_wd_linadd.m
| A	matlab_and_octave/examples/legacy/tests/test_wdocas.m
| A	matlab_and_octave/examples/legacy/tests/test_wds_consensus.m
| A	matlab_and_octave/examples/legacy/tests/test_wds_kernel.m
| A	matlab_and_octave/examples/legacy/tests/test_wdshift_position_weights.m
| A	matlab_and_octave/examples/legacy/tests/test_weighted_spectrum.m
| A	matlab_and_octave/examples/legacy/wd_kernel.m
| A	matlab_and_octave/examples/legacy/wds_kernel.m
| A	matlab_and_octave/examples/legacy/weighted_spec.m
| M	matlab_and_octave/examples/liblinear.m
| M	matlab_and_octave/examples/lik_kernel.m
| M	matlab_and_octave/examples/lpboost.m
| M	matlab_and_octave/examples/lpm.m
| M	matlab_and_octave/examples/markov_chain.m
| M	matlab_and_octave/examples/mkl_classify_christmas_star.m
| M	matlab_and_octave/examples/mkl_regression_3sine_waves.m
| M	matlab_and_octave/examples/mkl_regression_sine.m
| M	matlab_and_octave/examples/spec_kernel.m
| M	matlab_and_octave/examples/string_features.m
| M	matlab_and_octave/examples/stringfeatures.m
| M	matlab_and_octave/examples/svmocas.m
| M	matlab_and_octave/examples/svmsgd.m
| M	matlab_and_octave/examples/tests/test_classifier.m
| M	matlab_and_octave/examples/tests/test_combined.m
| M	matlab_and_octave/examples/tests/test_combined2.m
| M	matlab_and_octave/examples/tests/test_complex_scenario.m
| M	matlab_and_octave/examples/tests/test_custom_kernel.m
| M	matlab_and_octave/examples/tests/test_kernel_optimization.m
| M	matlab_and_octave/examples/tests/test_knn.m
| M	matlab_and_octave/examples/tests/test_l2svm.m
| M	matlab_and_octave/examples/tests/test_linadd.m
| M	matlab_and_octave/examples/tests/test_linear_methods.m
| M	matlab_and_octave/examples/tests/test_mkl.m
| M	matlab_and_octave/examples/tests/test_mkl_svr.m
| M	matlab_and_octave/examples/tests/test_mkl_svr_wrapper.m
| M	matlab_and_octave/examples/tests/test_ocas_normalization.m
| M	matlab_and_octave/examples/tests/test_one_class_svm.m
| M	matlab_and_octave/examples/tests/test_regression_linadd.m
| M	matlab_and_octave/examples/tests/test_sliding_window.m
| M	matlab_and_octave/examples/tests/test_sparse.m
| M	matlab_and_octave/examples/tests/test_sparse_methods.m
| M	matlab_and_octave/examples/tests/test_spec_consensus.m
| M	matlab_and_octave/examples/tests/test_subgradsvm.m
| M	matlab_and_octave/examples/tests/test_svmlight_libsvm.m
| M	matlab_and_octave/examples/tests/test_svrlight_libsvr.m
| M	matlab_and_octave/examples/tests/test_wd_kernel.m
| M	matlab_and_octave/examples/tests/test_wd_linadd.m
| M	matlab_and_octave/examples/tests/test_wdocas.m
| M	matlab_and_octave/examples/tests/test_wds_consensus.m
| M	matlab_and_octave/examples/tests/test_wds_kernel.m
| M	matlab_and_octave/examples/tests/test_wdshift_position_weights.m
| M	matlab_and_octave/examples/tests/test_weighted_spectrum.m
| M	matlab_and_octave/examples/wd_kernel.m
| M	matlab_and_octave/examples/wds_kernel.m
| M	matlab_and_octave/examples/weighted_spec.m
|  
* commit a4058e4296c5f215f2339333c87a6b402b8269e9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon May 5 23:04:11 2008 +0000
| 
|     interface:
|     - Clearer output when kernel is initialised with wrong target.
| 
| M	src/guilib/GUIKernel.cpp
|  
* commit 5656220399ebffcf917aa8784cd3e41fe631621e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon May 5 21:05:12 2008 +0000
| 
|     interface:
|     - Fixed recognition of WEIGHTEDDEGREEPOS2_NONORM.
| 
| M	src/interface/SGInterface.cpp
|  
* commit d0fe817f012e139f47b2d4b9090c215760aaf1c2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 5 19:22:34 2008 +0000
| 
|     allow setting of custom weights for W.C.W.S.K :-)
| 
| M	src/NEWS
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.i
|  
* commit d04e79431372e2b7832930b85367e02f13e6fcb1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon May 5 19:18:28 2008 +0000
| 
|     interface:
|     - Completed support for KRR. KRR seems broken, though.
| 
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUICommands.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit f9290ae33aebc82dbe021092bef559152d8a5ed5
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon May 5 17:53:27 2008 +0000
| 
|     interface:
|     - Usage of send_command will spit out a warning now.
|     - Help texts adjusted to not use strings as method arguments.
| 
| M	src/interface/SGInterface.cpp
|  
* commit 5cbad97b7dc6bca981138705d8a3bf7ddbad9b84
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 4 22:49:20 2008 +0000
| 
|     the compute_helper function in commwordstringkernel was not anymore declared
|     virtual. this broke weightedcommwordstringkernel for quite some releases :(
|     
|     extract the diagonal optimization into a separate function compute_diag, this
|     should not be turned on for the weightedcommwordstringkernel
| 
| M	src/base/SGObject.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
|  
* commit cfae7920e5a539c1cea6118b139aebbe84073ad8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 4 10:23:52 2008 +0000
| 
|     - finish porting r-modular examples (for all feature types...)
|     - remove executable bit from examples
| 
| M	octave-modular/examples/all_classifier.m
| M	octave-modular/examples/all_clustering.m
| M	octave-modular/examples/all_distance.m
| M	octave-modular/examples/all_distribution.m
| M	octave-modular/examples/all_kernels.m
| M	octave-modular/examples/all_preproc.m
| M	octave-modular/examples/all_regression.m
| M	r-modular/examples/all_distance.R
| M	r-modular/examples/all_distribution.R
| M	r-modular/examples/all_kernels.R
| M	r-modular/examples/all_preproc.R
|  
* commit 230cd2cfa9b303bebbd20a81d305615f3ad228dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 4 06:21:56 2008 +0000
| 
|     make string examples work with r-modular
| 
| M	r-modular/examples/all_classifier.R
|  
* commit 0ce001582cabd26b6864d5b93fe6385b34dd96cc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 4 05:49:56 2008 +0000
| 
|     also make the get_deriv* calls work
| 
| M	r-modular/examples/all_distribution.R
|  
* commit b645686cbc7b3e89b91ee491da0287e15f0d1884
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 4 05:34:35 2008 +0000
| 
|     string features work now - adding examples for distributions :)
| 
| M	r-modular/examples/all_distribution.R
|  
* commit 28b41ae4e63d1e7af16ff87d28ee56b0b45a68be
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Sat May 3 22:14:45 2008 +0000
| 
|     Removed irritating Done prints
| 
| M	src/kernel/CommWordStringKernel.cpp
|  
* commit cda6422e847273a3335e128587afad8aae7b7ff9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat May 3 22:09:32 2008 +0000
| 
|     interface:
|     - Made command 'clear' do something useful.
| 
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIKNN.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPreProc.cpp
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit f7c8cdc76886f6a4a73a5d7815b8f582b5dfc336
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat May 3 01:24:04 2008 +0000
| 
|     interface:
|     - It is unnecessary now to supply the number of chars you want to have
|       matched in strmatch if you want to have an exact match.
|     - Some more little fixes.
| 
| M	matlab_and_octave/examples/tests/test_complex_scenario.m
| M	matlab_and_octave/examples/wds_kernel.m
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit d76f016d17a132ab40ac51c6b70ca7443812b4ef
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri May 2 23:50:22 2008 +0000
| 
|     interface:
|     - Improved error handling for vectors and handling of spaces in command
|       strings.
| 
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 009a88e6939838080fb531d0d0a31e517311bdb1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri May 2 21:38:39 2008 +0000
| 
|     interface:
|     - Fixed a bug in default value for SVM C2.
| 
| M	src/interface/SGInterface.cpp
|  
* commit ddfb5a92447038e80958fdb02a096b80969b2e4d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri May 2 20:11:21 2008 +0000
| 
|     interface:
|     - Made little changes on how WEIGHTEDDEGREEPOS2/3 are implemented.
| 
| M	src/guilib/GUIKernel.cpp
| M	src/interface/SGInterface.cpp
|  
* commit ef031ef510ad5b25bdd96d2d241d257cea7c91b5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 2 18:51:21 2008 +0000
| 
|     better do explicit casts, mxChar is 16bit, CHAR only 8
| 
| M	src/interface/MatlabInterface.cpp
|  
* commit 5f7093368c2510578e1cc506899fbdf1a001fc1c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 2 15:54:34 2008 +0000
| 
|     speed up loading shogun modules from R a lot
| 
| M	octave-modular/examples/all_distance.m
| M	r-modular/examples/libsvm.R
| M	src/Makefile
|  
* commit b4cf998aa190e0536c65646fd73ffc2f59c7e71a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri May 2 05:03:28 2008 +0000
| 
|     interface:
|     - Fixed a couple of issues, including WeightedDegreePositionString. There
|       seems be a problem with support vectors somewhere, though.
| 
| M	matlab_and_octave/examples/tests/test_combined.m
| M	matlab_and_octave/examples/tests/test_combined2.m
| M	matlab_and_octave/examples/tests/test_complex_scenario.m
| M	matlab_and_octave/examples/tests/test_kernel_optimization.m
| M	matlab_and_octave/examples/tests/test_linadd.m
| M	matlab_and_octave/examples/tests/test_mkl.m
| M	matlab_and_octave/examples/tests/test_mkl_svr.m
| M	matlab_and_octave/examples/tests/test_mkl_svr_wrapper.m
| M	matlab_and_octave/examples/tests/test_regression_linadd.m
| M	matlab_and_octave/examples/tests/test_wd_kernel.m
| M	matlab_and_octave/examples/tests/test_wd_linadd.m
| M	matlab_and_octave/examples/tests/test_wds_kernel.m
| M	matlab_and_octave/examples/tests/test_wdshift_position_weights.m
| M	matlab_and_octave/examples/wds_kernel.m
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIPreProc.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit e06e03c63adab516dea0599c6cd536ad6382b39b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 1 20:55:53 2008 +0000
| 
|     interface:
|     - Obliterated gui/.
|     - The previous check-in should have meant that WeightedDegree* is b0rked.
| 
| D	src/gui/GUI.cpp
| D	src/gui/GUI.h
| D	src/gui/TextGUI.cpp
| D	src/gui/TextGUI.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIDistance.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKNN.cpp
| M	src/guilib/GUIKNN.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUILabels.cpp
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUITime.cpp
| M	src/guilib/GUITime.h
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit a6d9db043ff0770a85a87e98a62e7fe6874e47bf
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 1 02:42:47 2008 +0000
| 
|     interface:
|     - Implemented all changes necessary to support old and new interface.
|       WeightedDegree* (read: vectors in a string) is apparently, though.
| 
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIDistance.h
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUILabels.cpp
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 3e399e261e70255440edb8996793643f4ce3fe24
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 1 02:36:12 2008 +0000
| 
|     matlab_and_octave examples:
|     - Provide better training data and labels for Perceptron.
|     - Command 'new_knn' was removed, switched to 'new_classifier KNN'.
| 
| M	matlab_and_octave/examples/all_classifier.m
|  
* commit 52fa68e13c72733e3f05497e2676da37d5b89992
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 1 02:33:51 2008 +0000
| 
|     matlab_and_octave examples:
|     - Similar fixes like in previous check-in: clear_kernel and make a a real
|       matrix out of train data.
| 
| M	matlab_and_octave/examples/mkl_regression_3sine_waves.m
| M	matlab_and_octave/examples/mkl_regression_sine.m
|  
* commit 780f6ab986575381ebcef8ab103e1eaf3978ac8a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 1 02:05:12 2008 +0000
| 
|     matlab_and_octave examples:
|     - Removed 's' from call to non-existing command 'clean_kernels'.
| 
| M	matlab_and_octave/examples/mkl_classify_christmas_star.m
|  
* commit 554cbf366effddb62a178e54ae6273564d5801f9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 30 09:18:32 2008 +0000
| 
|     add examples for kernels (not byte/word/char based ones as R doesn't support 'byte,word' and there are still problems with R+swig and enums and strings)
| 
| M	r-modular/examples/all_classifier.R
| A	r-modular/examples/all_kernels.R
|  
* commit 86d87d9bda56afd3dd8db89f7d768fe5e1a37085
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 30 08:39:22 2008 +0000
| 
|     convert examples for distances
| 
| A	r-modular/examples/all_distance.R
|  
* commit 497e50a534e0a88f8684f4dd437a848c3c03174d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 30 08:21:27 2008 +0000
| 
|     add example for clustering
| 
| A	r-modular/examples/all_clustering.R
|  
* commit 43624bf096ba4ecd616ceef41487416c8c5f881a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 30 08:15:21 2008 +0000
| 
|     add examples for preprocs
| 
| A	r-modular/examples/all_preproc.R
|  
* commit 851b9550b2537953deede215409022cec0d075ba
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 30 07:49:17 2008 +0000
| 
|     - really disable garbage collection in r-modular (crashes if on)
|     - implement r-typemaps for setting strings
|     - classifier and regression examples for R work now (except for string based/enum requiring functions)
| 
| M	README
| A	r-modular/examples/all_classifier.R
| M	r-modular/examples/all_distribution.R
| M	r-modular/examples/all_regression.R
| M	r/examples/graphical/hmm.R
| M	src/base/SGObject.i
| M	src/lib/r.h
| M	src/lib/r_typemaps.i
|  
* commit fcb3e75c7ea49bd213108d5ddf83ceb8fe69f585
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Apr 30 05:27:53 2008 +0000
| 
|     classifier:
|     - Fix: Perceptron::train even returned false when it had converged.
| 
| M	src/classifier/Perceptron.cpp
|  
* commit 3a3e2743f1701f5d7b6addfaa721f79adf2fca60
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Apr 30 01:54:56 2008 +0000
| 
|     lib:
|     - Introduced EPreProcType.
| 
| M	src/lib/common.h
|  
* commit 57c576e3954a40ede57bded34053e2fd069d4506
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Apr 28 21:27:42 2008 +0000
| 
|     interface:
|     - Interface now supports new and legacy way to handle features.
| 
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/interface/SGInterface.cpp
|  
* commit 8745d4a3154a1010dccae5d3607a580e12d8bbb8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 27 19:09:18 2008 +0000
| 
|     ported regression examples to r-modular - Rswig seems to work now with my
|     recent fixes - the other examples are still missing though WIP
| 
| A	r-modular/examples/all_distribution.R
| M	r-modular/examples/all_regression.R
| M	r-modular/examples/first_shot.R
| M	r-modular/examples/libsvm.R
| M	src/NEWS
|  
* commit c5d157e3450aec0e35853b21ce722bcfd978628a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Apr 25 23:05:52 2008 +0000
| 
|     interface
|     - Implemented command set/add_kernel in a legacy-tolerant way. all_* examples
|       in octave run through, so there are only spiteful bugs.
| 
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 6033cc92acb976b9eb707ba6df92484c1f21baff
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 25 16:44:28 2008 +0000
| 
|     There was actually no bug in SWIG but in R 2.7 (and still is - long input lines
|     cause it to crash, solution posted to Rd mailinglist). Which means R+swig works
|     in principle. However are definitely a couple of (minor/easily fixable) bugs in
|     the R wrapper that need further fixes before shogun fully works:
|     
|     1) the dispatcher (called when an object is constructed) wrongly calls
|     	extends(argtypes[1], 'numeric')) which will never be true for a matrix (some
|     	magic is needed here). Workaround for now is to not use
|     	RealFeatures(my_matrix), but
|     	rf=RealFeatures()
|     	rf$copy_feature_matrix(rf, my_matrix)
|     2) arguments that take a double* will all be modified via as.numeric(arg) which
|     	converts matrices -> vectors. IMHO it does not make sense to do any conversion
|     	at all but for compatibility a workaround for now is to use
|     	%{  if (!is.numeric($input)) $input = as.numeric($input) %}
|     	in the scoercein typemap
|     3) the R2.7 swig mkCharEnc fix (patch submitted)
| 
| A	r-modular/examples/all_regression.R
| M	r-modular/examples/first_shot.R
| A	r-modular/examples/libsvm.R
| M	r/Makefile
| M	src/base/SGObject.h
| M	src/classifier/svm/SVM_light.i
| M	src/lib/Mathematics.i
| M	src/lib/Signal.i
| M	src/lib/Trie.i
| M	src/lib/io.i
| M	src/lib/r_typemaps.i
|  
* commit 2ef22c674cd7f178f2d2b5a6a056701fccbd4a7d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 25 07:27:39 2008 +0000
| 
|     move r-modular to tld and fix R -> r in Makefile
| 
| M	Makefile
| M	README
| A	r-modular/examples/first_shot.R
| D	r/R-modular/examples/first_shot.R
|  
* commit 4167676cde9b1a96b9d9573a4f1102b4661db2c5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 25 07:25:39 2008 +0000
| 
|     rename R-modular / R to r-modular / r (all lowercase )
| 
| D	R-modular/examples/first_shot.R
| D	R/Makefile
| D	R/README.txt
| D	R/examples/all_classifier.R
| D	R/examples/all_clustering.R
| D	R/examples/all_distance.R
| D	R/examples/all_distribution.R
| D	R/examples/all_kernels.R
| D	R/examples/all_preproc.R
| D	R/examples/all_regression.R
| D	R/examples/graphical/hmm.R
| D	R/examples/graphical/svm_classification.R
| D	R/examples/graphical/svr_regression.R
| D	R/sg/COPYING
| D	R/sg/DESCRIPTION
| D	R/sg/R/shogun.R
| D	R/sg/R/zzz.R
| D	R/sg/demo/00Index
| D	R/sg/demo/mkl_lin_sine_mix.R
| D	R/sg/demo/mkl_sine_regression.R
| D	R/sg/demo/string_kernel.R
| D	R/sg/demo/wd_mkl.R
| D	R/sg/demo/x-max_class.R
| D	R/sg/inst/doc/manual.pdf
| D	R/sg/inst/doc/sg.Rnw
| D	R/sg/tests/startup.R
| D	R/testcases/read_mfile.R
| D	R/testcases/run.sh
| D	R/testcases/test_R.R
| D	R/testcases/test_kernels.R
| A	r/Makefile
| A	r/R-modular/examples/first_shot.R
| A	r/README.txt
| A	r/examples/all_classifier.R
| A	r/examples/all_clustering.R
| A	r/examples/all_distance.R
| A	r/examples/all_distribution.R
| A	r/examples/all_kernels.R
| A	r/examples/all_preproc.R
| A	r/examples/all_regression.R
| A	r/examples/graphical/hmm.R
| A	r/examples/graphical/svm_classification.R
| A	r/examples/graphical/svr_regression.R
| A	r/sg/COPYING
| A	r/sg/DESCRIPTION
| A	r/sg/R/shogun.R
| A	r/sg/R/zzz.R
| A	r/sg/demo/00Index
| A	r/sg/demo/mkl_lin_sine_mix.R
| A	r/sg/demo/mkl_sine_regression.R
| A	r/sg/demo/string_kernel.R
| A	r/sg/demo/wd_mkl.R
| A	r/sg/demo/x-max_class.R
| A	r/sg/inst/doc/manual.pdf
| A	r/sg/inst/doc/sg.Rnw
| A	r/sg/tests/startup.R
| A	r/testcases/read_mfile.R
| A	r/testcases/run.sh
| A	r/testcases/test_R.R
| A	r/testcases/test_kernels.R
| M	src/Makefile
| M	src/configure
|  
* commit cbdf6c2e297824ad4730797a7d8747a08ab20358
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Apr 24 20:31:42 2008 +0000
| 
|     interface:
|     - Fixed an erroneous check for boolean scalar in Octave interface.
| 
| M	src/interface/OctaveInterface.cpp
|  
* commit 59b882ada2f3530f0f4eed68e4d4277bf2f2d6f7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 24 10:12:15 2008 +0000
| 
|     - fix crasher in dynprog (double free)
|     - cosmetic code formatting in svm
| 
| M	src/classifier/svm/SVM.cpp
| M	src/structure/DynProg.cpp
|  
* commit c37de0282e3f8ef15deaa19d13aa8745e37544f6
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Mon Apr 21 07:54:22 2008 +0000
| 
|     Hack to make sure that static sg_io has same display progress settings as svm.io
| 
| M	src/classifier/svm/SVM.cpp
| M	src/lib/io.h
|  
* commit 72d6fa79b48a006f8b6e7e9b23ee8c24c6a43e22
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 19 10:04:18 2008 +0000
| 
|     install octave files with executable bit set
| 
| M	src/Makefile
|  
* commit ba81013e7f8398679c3ad4c00e89aa540bb9679e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 19 08:53:50 2008 +0000
| 
|     fix PYTHONPATH on make test
| 
| M	src/Makefile
|  
* commit e05530fe7df8ecf0f413460072d51c874f60c44d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 19 06:23:40 2008 +0000
| 
|     add some automagic website documentation updates
| 
| M	Makefile
|  
* commit 37407754ddeac48ea29e4442373341452b570840
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 19 05:43:58 2008 +0000
| 
|     Preparing for new Release shogun_0.6.1
| 
| M	R/Makefile
| M	R/sg/DESCRIPTION
| M	doc/Doxyfile
| M	src/ChangeLog
|  
* commit 20c4c45af55407f282c29244f3cf1faf9f3011ea
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 19 05:39:25 2008 +0000
| 
|     let make distclean also remove octave-core files, cplex.log and .swp files
| 
| M	src/Makefile
|  
* commit 9ecda4f5c5c223a7435634e1716e4de13fe61bed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 19 05:32:02 2008 +0000
| 
|     categorize help in topics
| 
| M	src/NEWS
| M	src/interface/SGInterface.cpp
|  
* commit 92503b2f4532240f15d8bd78e261e93abc5c3076
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Apr 18 18:10:56 2008 +0000
| 
|     interface:
|     - Extended help command to list commands in groups.
| 
| M	src/interface/SGInterface.cpp
|  
* commit a0a2b05abe7b14b5970bb968a0c4444282aca513
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Apr 18 17:42:45 2008 +0000
| 
|     interface:
|     - Renamed all 'action' to 'command', incl. relating names
| 
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 7b200b38226eb36367a3c98f3fa4b73ebf0a8d5f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Apr 18 17:37:10 2008 +0000
| 
|     interface:
|     - Added remaining commands to make send_command obsolete.
| 
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 086f0edf709ae290c3f4d82967e1beea8d9b0574
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 18 17:12:14 2008 +0000
| 
|     update news
| 
| M	src/NEWS
|  
* commit 0d6ee4b3ded52dac9c01599b672ba57beb8cd4a0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 18 16:54:05 2008 +0000
| 
|     type : -> ;
| 
| M	src/kernel/Kernel.h
|  
* commit 143a9cf357f68ea61ddd232d6c09186e41922ab1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 18 16:34:31 2008 +0000
| 
|     resize cache fix, thanks Christian Widmer
| 
| M	src/kernel/Kernel.h
|  
* commit a82d2ffde33baa4266a7654d59e92edc590953d9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 18 16:16:04 2008 +0000
| 
|     Disable director in all swig files. This has big impact on
|     
|     a) speed
|     b) wrapper code size
|     c) inheritance.
|     
|     Good news first, every virtual function should be *much faster* now, as the
|     call is not anymore rerouted via the director wrapper to python and then from
|     there to the correct c++ function. Furthermore the wrapper code size decreases
|     a lot, the inheritance chain is shorter and compile times are reduced.
|     
|     The sad news is that virtual functions that *were overloaded via python code*
|     will not be used from inside the C++ code (not sure if anyone expected this to
|     		work - so it might not actually be that bad).
| 
| M	octave-modular/examples/all_classifier.m
| M	octave-modular/examples/all_regression.m
| M	src/classifier/Classifier.i
| M	src/clustering/Clustering.i
| M	src/distance/Distance.i
| M	src/distributions/Distribution.i
| M	src/evaluation/Evaluation.i
| M	src/features/Features.i
| M	src/kernel/Kernel.i
| M	src/lib/Library.i
| M	src/preproc/PreProc.i
| M	src/regression/Regression.i
|  
* commit 2eef0c29ab490f7d9df19c426d18a337463bcaee
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 18 09:11:55 2008 +0000
| 
|     further preps for the release
| 
| M	src/NEWS
|  
* commit 30bf1265df0a92e7937acbbd122ef36c7a766125
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 18 07:29:20 2008 +0000
| 
|     with Xavier Delacour recent swig fix all examples run through as long as only a
|     single thread is used
| 
| M	octave-modular/examples/all_classifier.m
| M	octave-modular/examples/all_regression.m
| M	octave-modular/examples/libsvm.m
|  
* commit 71a30a9eb2e9cc6c8cf7cb0dcb86f572cd7c47eb
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Apr 18 00:28:21 2008 +0000
| 
|     interface:
|     - Added a few more commands to make send_command obsolete in the near future.
| 
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit d136545517773cfc0b0d0ba8021ef388f06b6944
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Apr 17 22:55:29 2008 +0000
| 
|     interface:
|     - Added a bunch of commands to make send_command obsolete in the near future.
| 
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit b4edbfeb7af7d2119df6c8c214e476109a403390
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 17 10:24:35 2008 +0000
| 
|     - fix a memory leak in KRR
|     - add forgotten typemap in Hierarchical
|     - add semicolon on make install for octave-modular
|     - add the same examples we have for python-modular to octave-modular: there
|     seems to be still a bug leading to infinity recursions for virtual functions in
|     the octave swig wrapper ... to be debugged
| 
| A	octave-modular/examples/all_classifier.m
| A	octave-modular/examples/all_clustering.m
| A	octave-modular/examples/all_distance.m
| A	octave-modular/examples/all_distribution.m
| A	octave-modular/examples/all_kernels.m
| A	octave-modular/examples/all_preproc.m
| A	octave-modular/examples/all_regression.m
| M	octave-modular/examples/libsvm.m
| M	src/Makefile
| M	src/clustering/Hierarchical.i
| M	src/lib/octave_typemaps.i
| M	src/lib/python_typemaps.i
| M	src/regression/KRR.cpp
| M	src/regression/svr/SVR_light.h
|  
* commit fa0b38a56ee80196434a31f3c5e1fced5f3f6a86
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 16 12:06:35 2008 +0000
| 
|     fix a couple of compile warnings on 64bit arch
| 
| M	src/features/SparseFeatures.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.cpp
| M	src/kernel/SalzbergWordKernel.cpp
|  
* commit 031dd56611d47f29b2887d282e7ed0da649df3aa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 16 11:43:41 2008 +0000
| 
|     - compile fix
|     - fix crasher due to united variable in wordfeatures
|     - adjust python examples/testsuite to match new syntax
| 
| M	python-modular/examples/all_kernels.py
| M	python-modular/testcases/util.py
| M	src/features/ShortRealFeatures.h
| M	src/features/WordFeatures.h
|  
* commit e5d518b7e0055b826d9660408a4da4fcc27e811e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 16 11:05:51 2008 +0000
| 
|     * get rid of most %pythoncode extensions, which brings the following
|      incompatible changes:
|     	- Byte/Char features have to be created like stringfeatures, i.e.
|     		bf=ByteFeatures(alphabet)
|     		bf.copy_feature_matrix(array(...))
|     * only the convenience function for SVM remains (for the python interface), in
|       case we later do some define magic we might do
|     	a) magic multi argument typemaps, e.g. ByteFeatures(alphabet, feat)
|         b) functions with multiple numpy arrays... e.g. SVM(svs, alphas, b)
|     		with CSVM(INT* svs, INT num_svs, DREAL* alphas, INT num_alpha, DREAL b)
| 
| M	src/classifier/svm/SVM.i
| M	src/features/ByteFeatures.i
| M	src/features/CharFeatures.i
| M	src/features/IntFeatures.h
| M	src/features/IntFeatures.i
| M	src/features/RealFeatures.h
| M	src/features/RealFeatures.i
| M	src/features/ShortFeatures.h
| M	src/features/ShortFeatures.i
| M	src/features/ShortRealFeatures.h
| M	src/features/ShortRealFeatures.i
| M	src/features/SimpleFeatures.i
| M	src/features/WordFeatures.h
| M	src/features/WordFeatures.i
|  
* commit 17198c12a48e74f9ccb3cbe665c3531dffd49f9b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 16 10:30:46 2008 +0000
| 
|     - resolved conflict, for multiple same name (but with different type) functions
|     - we won't need the elstupido %pythoncode class derivation stuff :-)
| 
| M	src/features/Labels.i
| M	src/lib/octave_typemaps.i
| M	src/lib/python_typemaps.i
| M	src/lib/r_typemaps.i
|  
* commit d334c4fee6b920844cad8d85c536b3c1f06d657d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 16 05:39:02 2008 +0000
| 
|     for the weighted spectrum kernel reverse must be True
| 
| M	python-modular/examples/all_kernels.py
|  
* commit 339f4e10977cdafa08287bbd48b6516bcc382f88
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 15 12:38:48 2008 +0000
| 
|     - wrap all typemaps in lib/swig_typemaps.i (that include python_typemaps.i etc...)
|     - only ever use include lib/r.h when including R files
|     - R does not need a prefix for .so files, e.g. Kernel.R and Kernel.so is the swig output
|     - add python swig support (including typemaps for i/o of vectors and matrices),
|     	while it should fully work it does not, guessing:
|     
|     	a) debian's R 2.7-prerelease is too new
|     	b) swig R wrapper support is far from mature
|     	c) subtleties of the R swig/interface or R even, e.g. the test works via R < ../R-modular/examples/first_shot.R
|     	but crashes when pasted in interactive mode. as long as the R swig
|     	maintainer does not respond this has 0 chance to improve in the future.
| 
| A	R-modular/examples/first_shot.R
| A	README
| M	src/classifier/LinearClassifier.i
| M	src/classifier/SparseLinearClassifier.i
| M	src/classifier/svm/SVM.i
| M	src/clustering/Clustering.i
| M	src/clustering/KMeans.i
| M	src/configure
| M	src/distance/Distance.i
| M	src/distributions/Distribution.i
| M	src/evaluation/Evaluation.i
| M	src/features/Alphabet.i
| M	src/features/ByteFeatures.i
| M	src/features/CharFeatures.i
| M	src/features/IntFeatures.i
| M	src/features/Labels.i
| M	src/features/RealFeatures.i
| M	src/features/ShortFeatures.i
| M	src/features/ShortRealFeatures.i
| M	src/features/SimpleFeatures.i
| M	src/features/StringFeatures.i
| M	src/features/WordFeatures.i
| M	src/interface/RInterface.cpp
| M	src/kernel/CustomKernel.i
| M	src/kernel/Kernel.i
| M	src/kernel/LinearKernel.i
| M	src/kernel/WeightedDegreePositionStringKernel.i
| M	src/kernel/WeightedDegreeStringKernel.i
| D	src/lib/R.h
| M	src/lib/Signal.cpp
| M	src/lib/io.cpp
| M	src/lib/matlab.h
| M	src/lib/octave.h
| M	src/lib/python.h
| A	src/lib/r.h
| A	src/lib/r_typemaps.i
| A	src/lib/swig_typemaps.i
| M	src/structure/Structure.i
|  
* commit 1cf8f9bc2969c99320e23083499a091f53070499
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 15 09:29:01 2008 +0000
| 
|     - add make install for octave-modular
|     - fix typo in usage help
|     - update todo list
| 
| M	src/Makefile
| M	src/TODO
| M	src/interface/SGInterface.cpp
|  
* commit 695170ccf1524009e6e9f4ab0e228bd67165aa53
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 15 07:54:11 2008 +0000
| 
|     fix another compile warning
| 
| M	src/lib/Mathematics.h
|  
* commit 86c4ef32fb9016082edaadf35dc6687880139b28
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 15 07:36:33 2008 +0000
| 
|     - fix a large number of gcc4.3 compile warnings
|     - add missing documentation
|     - add copyright header to octave_typemaps.i
| 
| M	doc/Doxyfile
| M	doc/pages/Installation.mainpage
| M	doc/pages/Screenshots.mainpage
| M	doc/pages/StaticInterfaces.mainpage
| M	doc/pages/Tutorial.mainpage
| M	src/features/Alphabet.cpp
| M	src/features/WordFeatures.cpp
| M	src/features/WordFeatures.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/KernelMachine.h
| M	src/kernel/PyramidChi2.h
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/lib/octave_typemaps.i
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 157a9c4e0b5b0552f2b6409d8ccc800a62da5264
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 14 10:54:13 2008 +0000
| 
|     add an example to show how thinks work w/ octave-modular
| 
| A	octave-modular/examples/libsvm.m
|  
* commit 864c71f62c75d117ef6bcb7d67619007a4a41b4e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 14 10:11:32 2008 +0000
| 
|     force variable to be in the outer context for IN1/IN2 octave typemaps. they
|     might have been deallocated (as they were local variables) before.
| 
| M	src/lib/octave_typemaps.i
|  
* commit 13a8f758be58ef1557be8ec0c9083022b1e80f1b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 14 07:10:47 2008 +0000
| 
|     - bugfix in R package building
|     - add a make update-webpage to simplify the release mechanism
| 
| M	Makefile
| M	src/ChangeLog
|  
* commit d82ac7aa4779b200cca55242a953bcb704d6eb53
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 14 05:25:46 2008 +0000
| 
|     - add forgotten includes for python_typemap and variable renaming
|     - use ref counting for octave interface too
|     - ignore all further constructors when creating Labels(lab), this seems to please typemaps (as in they are now applied)
| 
| M	src/base/SGObject.h
| M	src/base/SGObject.i
| M	src/clustering/KMeans.i
| M	src/features/Labels.i
| M	src/kernel/Kernel.i
|  
* commit b6366a47c8e0a6deed82a2a7c517c6a9c4c296ae
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 13 21:24:57 2008 +0000
| 
|     increadibly, swig for octave is basically working for everything, vectors,
|     matrices and strings (in and out...)... thanks to the swig team and
|     especially Xavier Delacour for the help... needs swig from svn to work
| 
| M	src/NEWS
| M	src/classifier/LinearClassifier.i
| M	src/classifier/SparseLinearClassifier.i
| M	src/classifier/svm/SVM.i
| M	src/clustering/Clustering.i
| M	src/distance/Distance.i
| M	src/distributions/Distribution.i
| M	src/evaluation/Evaluation.i
| M	src/features/Alphabet.i
| M	src/features/ByteFeatures.i
| M	src/features/CharFeatures.i
| M	src/features/IntFeatures.i
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/Labels.i
| M	src/features/RealFeatures.i
| M	src/features/ShortFeatures.i
| M	src/features/ShortRealFeatures.i
| M	src/features/SimpleFeatures.i
| M	src/features/StringFeatures.i
| M	src/features/WordFeatures.i
| M	src/kernel/CustomKernel.i
| M	src/kernel/Kernel.i
| M	src/kernel/LinearKernel.i
| M	src/kernel/WeightedDegreePositionStringKernel.i
| M	src/kernel/WeightedDegreeStringKernel.i
| A	src/lib/octave_typemaps.i
| M	src/lib/python.h
| M	src/lib/python_typemaps.i
| M	src/structure/Structure.i
|  
* commit 981c8ee51b65d1d47f3906f173bbff3a9b54d409
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Apr 13 16:39:33 2008 +0000
| 
|     interface:
|     - Updated help command to give the user a hint how to invoke help for a single
|       command.
| 
| M	src/interface/SGInterface.cpp
|  
* commit 244ea12c9570dae8d434ebae47bd65f8db958c87
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 13 11:29:50 2008 +0000
| 
|     get rid of the R/sg/src directory in release archives
| 
| M	Makefile
|  
* commit c878d33cf9905428e6fdee3d4c136b09d706ef7e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 13 10:04:06 2008 +0000
| 
|     fixed a few doxygen documentation warnings
| 
| M	src/clustering/KMeans.h
| M	src/features/SimpleFeatures.h
| M	src/features/StringFeatures.h
| M	src/kernel/Kernel.h
| M	src/kernel/KernelMachine.h
|  
* commit 151605f2ec5772ccb62a9bb1763d782eee22e399
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 12 23:41:31 2008 +0000
| 
|     add missing files to docu, fix **
| 
| A	doc/pages/Authors.mainpage
| A	doc/pages/FAQ.mainpage
| A	doc/pages/Interfaces.mainpage
| A	doc/pages/Methods.mainpage
| A	doc/pages/ModularInterfaces.mainpage
| A	doc/pages/Screenshots.mainpage
| M	doc/pages/StaticInterfaces.mainpage
| A	doc/pages/authors
|  
* commit 7d599a74cd8c5a722c34f7f153674ccd7b125c69
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 12 23:05:26 2008 +0000
| 
|     Preparing for new Release shogun_0.6.0
| 
| M	doc/Doxyfile
|  
* commit 9d2619a3d4ed17a428ceece12b7a82482146502f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 12 23:05:21 2008 +0000
| 
|     doxygen updates
| 
| M	Makefile
| M	R/Makefile
| M	R/sg/DESCRIPTION
|  
* commit 88fba376e22b86fdaf6a3cd733b0aed450aa06d3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 12 23:01:21 2008 +0000
| 
|     - lots more of documentation
| 
| M	doc/Doxyfile
| M	doc/pages/Documentation.mainpage
| M	doc/pages/License.mainpage
| M	doc/pages/StaticInterfaces.mainpage
| M	matlab_and_octave/examples/graphical/svm_classification.m
| A	src/COPYRIGHT
| M	src/LICENSE
| M	src/LICENSE.SVMlight
| M	src/NEWS
|  
* commit 7292209f65358368957892e3c96e44602541bf08
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Apr 12 22:27:49 2008 +0000
| 
|     interface:
|     - Little bugfix to usage string of set_features and proper delete[] in a_help.
|     - Reshuffling of methods to have them grouped properly.
|     - Added many commands which merely call send_command for the time being.
| 
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit d75c4db58c08bb84fc9afc727e01b898bc343f47
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Apr 12 20:08:52 2008 +0000
| 
|     interface:
|     - Removed superflous command test.
|     - Improved help function.
| 
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 9dce6075bb0d32fa4b84d23e8ff956c69a4c2c33
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 12 18:20:32 2008 +0000
| 
|     updated docu
| 
| A	R/sg/inst/doc/sg.Rnw
| M	doc/Doxyfile
| M	doc/pages/StaticInterfaces.mainpage
|  
* commit cbcc481c9dd21cca9cb32b01830c5f740f4a4b07
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 12 14:11:12 2008 +0000
| 
|     - remove vignette and include documentation in doxygen
|     - get swig-octave to work for Kernels.
| 
| D	R/sg/inst/doc/sg.Rnw
| M	doc/pages/StaticInterfaces.mainpage
| M	src/kernel/Kernel.i
|  
* commit 288d6fd1b350b5775f48705f26c27e374c8532ca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 12 11:26:49 2008 +0000
| 
|     add yaroslav to authors, minimal documentation
| 
| M	doc/Doxyfile
| M	doc/pages/Documentation.mainpage
| M	doc/pages/Installation.mainpage
| M	doc/pages/License.mainpage
| D	doc/pages/Makefile
| M	doc/pages/StaticInterfaces.mainpage
| M	doc/pages/Tutorial.mainpage
| M	doc/pages/shogun_footer.html
| M	src/.authors
|  
* commit a7887988624f10a48f3c351aac577a372a8c7c43
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 12 09:41:40 2008 +0000
| 
|     - svn put tests into tests/ directory
|     - move/merge documenation form .txt files to doxygen
|     - update README and fix doc generation
| 
| M	doc/Doxyfile
| A	doc/README
| D	doc/README.deps
| A	doc/pages/Documentation.mainpage
| A	doc/pages/Installation.mainpage
| A	doc/pages/License.mainpage
| D	doc/pages/R.txt
| A	doc/pages/StaticInterfaces.mainpage
| A	doc/pages/Tutorial.mainpage
| D	doc/pages/cmdline.txt
| D	doc/pages/commands.txt
| D	doc/pages/faq.txt
| D	doc/pages/installation.txt
| D	doc/pages/interfaces.txt
| D	doc/pages/introduction.txt
| D	doc/pages/license.txt
| D	doc/pages/matlab.txt
| D	doc/pages/octave.txt
| D	doc/pages/overview.txt
| D	doc/pages/python.txt
| A	doc/pages/shogun_footer.html
| D	doc/shogun_footer.html
| D	matlab_and_octave/examples/test_classifier.m
| D	matlab_and_octave/examples/test_combined.m
| D	matlab_and_octave/examples/test_combined2.m
| D	matlab_and_octave/examples/test_complex_scenario.m
| D	matlab_and_octave/examples/test_custom_kernel.m
| D	matlab_and_octave/examples/test_interface.m
| D	matlab_and_octave/examples/test_kernel_optimization.m
| D	matlab_and_octave/examples/test_knn.m
| D	matlab_and_octave/examples/test_l2svm.m
| D	matlab_and_octave/examples/test_linadd.m
| D	matlab_and_octave/examples/test_linear_methods.m
| D	matlab_and_octave/examples/test_mkl.m
| D	matlab_and_octave/examples/test_mkl_svr.m
| D	matlab_and_octave/examples/test_mkl_svr_wrapper.m
| D	matlab_and_octave/examples/test_ocas_normalization.m
| D	matlab_and_octave/examples/test_one_class_svm.m
| D	matlab_and_octave/examples/test_regression_linadd.m
| D	matlab_and_octave/examples/test_sliding_window.m
| D	matlab_and_octave/examples/test_sparse.m
| D	matlab_and_octave/examples/test_sparse_methods.m
| D	matlab_and_octave/examples/test_spec_consensus.m
| D	matlab_and_octave/examples/test_subgradsvm.m
| D	matlab_and_octave/examples/test_svmlight_libsvm.m
| D	matlab_and_octave/examples/test_svrlight_libsvr.m
| D	matlab_and_octave/examples/test_wd_kernel.m
| D	matlab_and_octave/examples/test_wd_linadd.m
| D	matlab_and_octave/examples/test_wdocas.m
| D	matlab_and_octave/examples/test_wds_consensus.m
| D	matlab_and_octave/examples/test_wds_kernel.m
| D	matlab_and_octave/examples/test_wdshift_position_weights.m
| D	matlab_and_octave/examples/test_weighted_spectrum.m
| A	matlab_and_octave/examples/tests/test_classifier.m
| A	matlab_and_octave/examples/tests/test_combined.m
| A	matlab_and_octave/examples/tests/test_combined2.m
| A	matlab_and_octave/examples/tests/test_complex_scenario.m
| A	matlab_and_octave/examples/tests/test_custom_kernel.m
| A	matlab_and_octave/examples/tests/test_interface.m
| A	matlab_and_octave/examples/tests/test_kernel_optimization.m
| A	matlab_and_octave/examples/tests/test_knn.m
| A	matlab_and_octave/examples/tests/test_l2svm.m
| A	matlab_and_octave/examples/tests/test_linadd.m
| A	matlab_and_octave/examples/tests/test_linear_methods.m
| A	matlab_and_octave/examples/tests/test_mkl.m
| A	matlab_and_octave/examples/tests/test_mkl_svr.m
| A	matlab_and_octave/examples/tests/test_mkl_svr_wrapper.m
| A	matlab_and_octave/examples/tests/test_ocas_normalization.m
| A	matlab_and_octave/examples/tests/test_one_class_svm.m
| A	matlab_and_octave/examples/tests/test_regression_linadd.m
| A	matlab_and_octave/examples/tests/test_sliding_window.m
| A	matlab_and_octave/examples/tests/test_sparse.m
| A	matlab_and_octave/examples/tests/test_sparse_methods.m
| A	matlab_and_octave/examples/tests/test_spec_consensus.m
| A	matlab_and_octave/examples/tests/test_subgradsvm.m
| A	matlab_and_octave/examples/tests/test_svmlight_libsvm.m
| A	matlab_and_octave/examples/tests/test_svrlight_libsvr.m
| A	matlab_and_octave/examples/tests/test_wd_kernel.m
| A	matlab_and_octave/examples/tests/test_wd_linadd.m
| A	matlab_and_octave/examples/tests/test_wdocas.m
| A	matlab_and_octave/examples/tests/test_wds_consensus.m
| A	matlab_and_octave/examples/tests/test_wds_kernel.m
| A	matlab_and_octave/examples/tests/test_wdshift_position_weights.m
| A	matlab_and_octave/examples/tests/test_weighted_spectrum.m
| M	src/Makefile
| D	src/base/Documentation.mainpage
| M	src/classifier/svm/SVM.h
| M	src/kernel/KernelMachine.h
|  
* commit f00ca08ca174a036b24a9874b83689abfe628550
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 12 09:30:50 2008 +0000
| 
|     doc moving
| 
| A	doc/Doxyfile
| M	doc/Makefile
| M	doc/README.deps
| D	doc/doxygen/Doxyfile
| D	doc/doxygen/MatlabDemo.png
| D	doc/doxygen/OctaveDemo.png
| D	doc/doxygen/PythonDemo.png
| D	doc/doxygen/RDemo.png
| D	doc/doxygen/footer.dpp
| D	doc/doxygen/shogun_footer.html
| D	doc/doxygen/shogun_logo.png
| A	doc/footer.dpp
| A	doc/images/MatlabDemo.png
| A	doc/images/OctaveDemo.png
| A	doc/images/PythonDemo.png
| A	doc/images/RDemo.png
| A	doc/images/shogun_logo.png
| D	doc/manual/Makefile
| D	doc/manual/R.txt
| D	doc/manual/cmdline.txt
| D	doc/manual/commands.txt
| D	doc/manual/faq.txt
| D	doc/manual/installation.txt
| D	doc/manual/interfaces.txt
| D	doc/manual/introduction.txt
| D	doc/manual/license.txt
| D	doc/manual/matlab.txt
| D	doc/manual/octave.txt
| D	doc/manual/overview.txt
| D	doc/manual/python.txt
| A	doc/pages/Makefile
| A	doc/pages/R.txt
| A	doc/pages/cmdline.txt
| A	doc/pages/commands.txt
| A	doc/pages/faq.txt
| A	doc/pages/installation.txt
| A	doc/pages/interfaces.txt
| A	doc/pages/introduction.txt
| A	doc/pages/license.txt
| A	doc/pages/matlab.txt
| A	doc/pages/octave.txt
| A	doc/pages/overview.txt
| A	doc/pages/python.txt
| A	doc/shogun_footer.html
|  
* commit f25dc143d20667d2496965ac25cd3d58a8f6fe1d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 12 09:21:02 2008 +0000
| 
|     start moving documentation to doc/
| 
| M	doc/doxygen/Doxyfile
| D	doc/pseudocode/poim.txt
|  
* commit f4609196150e732bd828b44209e673c8a7ea125a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 11 19:05:46 2008 +0000
| 
|     rename plots -> graphical
| 
| A	R/examples/graphical/hmm.R
| A	R/examples/graphical/svm_classification.R
| A	R/examples/graphical/svr_regression.R
| D	R/examples/plots/hmm.R
| D	R/examples/plots/svm_classification.R
| D	R/examples/plots/svr_regression.R
| A	matlab_and_octave/examples/graphical/cluster_hierarchical.m
| A	matlab_and_octave/examples/graphical/cluster_kmeans.m
| A	matlab_and_octave/examples/graphical/entropy.m
| A	matlab_and_octave/examples/graphical/hmm.m
| A	matlab_and_octave/examples/graphical/lda_classification.m
| A	matlab_and_octave/examples/graphical/local_alignment_kernel.m
| A	matlab_and_octave/examples/graphical/mkl_pseudo_dna.m
| A	matlab_and_octave/examples/graphical/spec_interp.m
| A	matlab_and_octave/examples/graphical/svm_classification.m
| A	matlab_and_octave/examples/graphical/svm_multiclass.m
| A	matlab_and_octave/examples/graphical/svr_regression.m
| A	matlab_and_octave/examples/graphical/test_gnpp_svm.m
| A	matlab_and_octave/examples/graphical/test_poim_wds.m
| A	matlab_and_octave/examples/graphical/test_regression.m
| A	matlab_and_octave/examples/graphical/test_regression_mkl.m
| A	matlab_and_octave/examples/graphical/test_spec_interp.m
| A	matlab_and_octave/examples/graphical/test_svm_multiclass.m
| A	matlab_and_octave/examples/graphical/test_wd_wds_parallel.m
| A	matlab_and_octave/examples/graphical/wds_consensus.m
| A	matlab_and_octave/examples/graphical/wds_shift_interp.m
| D	matlab_and_octave/examples/plots/cluster_hierarchical.m
| D	matlab_and_octave/examples/plots/cluster_kmeans.m
| D	matlab_and_octave/examples/plots/entropy.m
| D	matlab_and_octave/examples/plots/hmm.m
| D	matlab_and_octave/examples/plots/lda_classification.m
| D	matlab_and_octave/examples/plots/local_alignment_kernel.m
| D	matlab_and_octave/examples/plots/mkl_pseudo_dna.m
| D	matlab_and_octave/examples/plots/spec_interp.m
| D	matlab_and_octave/examples/plots/svm_classification.m
| D	matlab_and_octave/examples/plots/svm_multiclass.m
| D	matlab_and_octave/examples/plots/svr_regression.m
| D	matlab_and_octave/examples/plots/test_gnpp_svm.m
| D	matlab_and_octave/examples/plots/test_poim_wds.m
| D	matlab_and_octave/examples/plots/test_regression.m
| D	matlab_and_octave/examples/plots/test_regression_mkl.m
| D	matlab_and_octave/examples/plots/test_spec_interp.m
| D	matlab_and_octave/examples/plots/test_svm_multiclass.m
| D	matlab_and_octave/examples/plots/test_wd_wds_parallel.m
| D	matlab_and_octave/examples/plots/wds_consensus.m
| D	matlab_and_octave/examples/plots/wds_shift_interp.m
| A	python-modular/examples/graphical/all_evaluation.py
| A	python-modular/examples/graphical/multiple_smvs.py
| A	python-modular/examples/graphical/numpy_krr.py
| A	python-modular/examples/graphical/numpy_krr_sinc.py
| A	python-modular/examples/graphical/numpy_lda.py
| A	python-modular/examples/graphical/numpy_svm.py
| A	python-modular/examples/graphical/numpy_svmlin.py
| A	python-modular/examples/graphical/numpy_svr_sinc.py
| A	python-modular/examples/graphical/util.py
| D	python-modular/examples/plots/all_evaluation.py
| D	python-modular/examples/plots/multiple_smvs.py
| D	python-modular/examples/plots/numpy_krr.py
| D	python-modular/examples/plots/numpy_krr_sinc.py
| D	python-modular/examples/plots/numpy_lda.py
| D	python-modular/examples/plots/numpy_svm.py
| D	python-modular/examples/plots/numpy_svmlin.py
| D	python-modular/examples/plots/numpy_svr_sinc.py
| D	python-modular/examples/plots/util.py
| A	python/examples/graphical/svm_classificaton.py
| A	python/examples/graphical/svr_regression.py
| D	python/examples/plots/svm_classificaton.py
| D	python/examples/plots/svr_regression.py
|  
* commit c1f5cc87a57dd1825f434aaa24f5b3783cd490be
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 11 09:33:04 2008 +0000
| 
|     fix the hmm viterbi path: it returns a WORD not real-vector: using
|     set_word_vector is the fix. as R does not support WORD add some fuzzing (return ints for WORD, DREAL for shortreal etc...)
| 
| M	matlab_and_octave/examples/plots/hmm.m
| M	python-modular/testcases/test_all.sh
| M	src/interface/RInterface.cpp
| M	src/interface/SGInterface.cpp
|  
* commit 2c5a3753b1a0a05456d62ecbc03a4b262fdfd892
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 11 05:09:06 2008 +0000
| 
|     octave-modular compile support
| 
| M	src/.generate_link_dependencies.py
| M	src/.scrub_docstrings.py
| M	src/Makefile
| M	src/base/SGObject.h
| M	src/base/SGObject.i
| M	src/classifier/KNN.h
| M	src/classifier/LinearClassifier.h
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/SparseLinearClassifier.h
| M	src/configure
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/lib/Signal.cpp
|  
* commit 35144439066b7508c60fdc11e1997e158e39866c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Apr 10 12:26:30 2008 +0000
| 
|     interface:
|     - Possibly fixed HMM issue.
|     - Forgot to add R toy examples previously.
| 
| A	R/examples/all_classifier.R
| A	R/examples/all_clustering.R
| A	R/examples/all_distance.R
| A	R/examples/all_distribution.R
| A	R/examples/all_kernels.R
| A	R/examples/all_preproc.R
| A	R/examples/all_regression.R
| M	matlab_and_octave/examples/all_distribution.m
| M	python/examples/all_distribution.py
| M	src/interface/SGInterface.cpp
|  
* commit da0f9935307462150d1f045e977790f1c3d2cb1a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Apr 10 12:05:50 2008 +0000
| 
|     interface:
|     - Fixed a memory access issue, all interfaces with each all_* example file are
|       valgrind-clear. HMM segfault issue is pending.
| 
| M	matlab_and_octave/examples/all_classifier.m
| M	src/guilib/GUIKernel.cpp
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 686fa84b89922047346a8a3adc6ba9089de3126c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Apr 10 10:20:45 2008 +0000
| 
|     HMM/interface:
|     - Mucked around with a bug in HMM, only did some cosmetic fixes. Maybe
|       CHMM::model_probability_comp must be changed? dunno how.
| 
| M	matlab_and_octave/examples/all_distribution.m
| M	src/distributions/hmm/HMM.cpp
| M	src/interface/SGInterface.cpp
|  
* commit 128061798d71a63522d13f28039943872dad71cb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 10 10:04:17 2008 +0000
| 
|     add jochens fixes to properly detect acml and intel mkl
| 
| M	src/configure
| M	src/lib/lapack.cpp
| M	src/lib/lapack.h
|  
* commit 8a95ca970b36db505205263e1e93941e11d790c0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 10 09:51:19 2008 +0000
| 
|     -don't ever directly include <cblas.h> but use lib/lapack.h instead
|     -remove <cblas.h> from many files that just don't need it
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/distance/CanberraMetric.cpp
| M	src/distance/ChebyshewMetric.cpp
| M	src/distance/GeodesicMetric.cpp
| M	src/distance/JensenMetric.cpp
| M	src/distance/ManhattanMetric.cpp
| M	src/distance/MinkowskiMetric.cpp
| M	src/kernel/DiagKernel.cpp
| M	src/kernel/SigmoidKernel.cpp
| M	src/preproc/PCACut.cpp
| M	src/regression/svr/SVR_light.cpp
|  
* commit b2c980ebd6aababcbe86b83b9eaa4a7a2d8a95aa
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Apr 9 17:10:55 2008 +0000
| 
|     interface:
|     - Added toy examples for R interface and moved plotting examples into plots/.
|     - Mostly cosmetic fixed to other interfaces.
| 
| D	R/examples/hmm.R
| A	R/examples/plots/hmm.R
| A	R/examples/plots/svm_classification.R
| A	R/examples/plots/svr_regression.R
| D	R/examples/svm_classification.R
| D	R/examples/svr_regression.R
| M	matlab_and_octave/examples/all_distance.m
| M	python/examples/all_distance.py
| M	python/examples/all_regression.py
| M	src/interface/RInterface.cpp
|  
* commit b2d404b51049e10d828df5ffb2b7cb3a4f5c225b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 9 07:57:34 2008 +0000
| 
|     convert tron to use cblas
| 
| M	src/classifier/svm/Tron.cpp
| M	src/configure
|  
* commit eade50ab4762595ee0d0a17626e5b42e1372d700
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 8 18:32:45 2008 +0000
| 
|     fix definition of dpotrf_
| 
| M	src/configure
|  
* commit 055a033864c532083a372ecde264ec7208a3212f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 8 18:18:15 2008 +0000
| 
|     link with cblas in case of atlas
| 
| M	src/configure
|  
* commit 627f00825943f29514717c6aee1d36602263026e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 8 17:52:47 2008 +0000
| 
|     Use --dis/enable-lapack again: the HAVE_LAPACK switch is on if blas and any
|     of ACML, MKL, ATLAS or vanilla LAPACK are found (each of which implement the
|     lapack standard). In configure detect if we have one of the many and as we use
|     clapack in case of atlas fall back to Jochen's wrappers if atlas is not available.
|     
|     Tested with lapack and atlas, still needs testing for MKL and ACML (which I don't have)
| 
| M	src/configure
|  
* commit 64a7b7a98badcbb630db93581cc87de6e50290bd
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Apr 8 14:48:01 2008 +0000
| 
|     interface:
|     - Added toy examples to matlab/octave interface.
|     - Moved plotting matlab/octave examples into subdirectory plots/.
| 
| A	matlab_and_octave/examples/all_classifier.m
| A	matlab_and_octave/examples/all_clustering.m
| A	matlab_and_octave/examples/all_distance.m
| A	matlab_and_octave/examples/all_distribution.m
| A	matlab_and_octave/examples/all_kernels.m
| A	matlab_and_octave/examples/all_preproc.m
| A	matlab_and_octave/examples/all_regression.m
| D	matlab_and_octave/examples/cluster_hierarchical.m
| D	matlab_and_octave/examples/cluster_kmeans.m
| D	matlab_and_octave/examples/entropy.m
| D	matlab_and_octave/examples/hmm.m
| D	matlab_and_octave/examples/lda_classification.m
| D	matlab_and_octave/examples/local_alignment_kernel.m
| D	matlab_and_octave/examples/mkl_pseudo_dna.m
| A	matlab_and_octave/examples/plots/cluster_hierarchical.m
| A	matlab_and_octave/examples/plots/cluster_kmeans.m
| A	matlab_and_octave/examples/plots/entropy.m
| A	matlab_and_octave/examples/plots/hmm.m
| A	matlab_and_octave/examples/plots/lda_classification.m
| A	matlab_and_octave/examples/plots/local_alignment_kernel.m
| A	matlab_and_octave/examples/plots/mkl_pseudo_dna.m
| A	matlab_and_octave/examples/plots/spec_interp.m
| A	matlab_and_octave/examples/plots/svm_classification.m
| A	matlab_and_octave/examples/plots/svm_multiclass.m
| A	matlab_and_octave/examples/plots/svr_regression.m
| A	matlab_and_octave/examples/plots/test_gnpp_svm.m
| A	matlab_and_octave/examples/plots/test_poim_wds.m
| A	matlab_and_octave/examples/plots/test_regression.m
| A	matlab_and_octave/examples/plots/test_regression_mkl.m
| A	matlab_and_octave/examples/plots/test_spec_interp.m
| A	matlab_and_octave/examples/plots/test_svm_multiclass.m
| A	matlab_and_octave/examples/plots/test_wd_wds_parallel.m
| A	matlab_and_octave/examples/plots/wds_consensus.m
| A	matlab_and_octave/examples/plots/wds_shift_interp.m
| D	matlab_and_octave/examples/spec_interp.m
| D	matlab_and_octave/examples/svm_classification.m
| D	matlab_and_octave/examples/svm_multiclass.m
| D	matlab_and_octave/examples/svr_regression.m
| D	matlab_and_octave/examples/test_gnpp_svm.m
| D	matlab_and_octave/examples/test_poim_wds.m
| D	matlab_and_octave/examples/test_regression.m
| D	matlab_and_octave/examples/test_regression_mkl.m
| D	matlab_and_octave/examples/test_spec_interp.m
| D	matlab_and_octave/examples/test_svm_multiclass.m
| D	matlab_and_octave/examples/test_wd_wds_parallel.m
| D	matlab_and_octave/examples/wds_consensus.m
| D	matlab_and_octave/examples/wds_shift_interp.m
|  
* commit 870010e7a8cbc5af25c209225a34fbdb545e2abe
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Apr 8 14:43:09 2008 +0000
| 
|     interface:
|     - Mostly cosmetic fixes to toy examples.
|     - Made regressions work.
| 
| M	python/examples/all_classifier.py
| M	python/examples/all_distance.py
| M	python/examples/all_distribution.py
| M	python/examples/all_kernels.py
| M	python/examples/all_preproc.py
| M	python/examples/all_regression.py
|  
* commit a327275c8cbad91766277925a4d0e3736e70b977
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 8 13:16:23 2008 +0000
| 
|     update NEWS
| 
| M	src/NEWS
|  
* commit 650d270f631680abc6d82c084ce18f55dbc09f0a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 8 13:02:59 2008 +0000
| 
|     - fix compile warning (NULL vs. 0) mismatch
|     - require octave version 3.0
| 
| M	src/classifier/PluginEstimate.cpp
| M	src/configure
|  
* commit 7fb8afdb6374737d58957fe0898fcd6343548146
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 8 12:54:48 2008 +0000
| 
|     compile fix for matlab 6.5 (logical does not exist there...)
| 
| M	src/interface/MatlabInterface.cpp
| M	src/lib/matlab.h
|  
* commit 99d1a2b3f9c013923a9c099ae07180ff3b772404
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 8 12:23:29 2008 +0000
| 
|     fix single kernel SVM-light
| 
| M	python-modular/examples/all_clustering.py
| M	python-modular/testcases/clustering.py
| M	src/classifier/svm/SVM_light.cpp
|  
* commit a0aba0a006e193954efd2b89baa1b5e871175eb8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 8 11:30:06 2008 +0000
| 
|     attempt to fix building w/ atlas
| 
| M	src/lib/Mathematics.h
| M	src/lib/lapack.cpp
| M	src/lib/lapack.h
|  
* commit f6ab471325d75ceb972caa114bf9482cafe0fa9d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 8 11:00:56 2008 +0000
| 
|     Add ACML and MKL support based on the patches from Jochen Garcke - thanks!
| 
| M	src/classifier/svm/pr_loqo.cpp
| M	src/configure
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/lapack.cpp
| M	src/lib/lapack.h
| M	src/preproc/PCACut.cpp
| M	src/regression/KRR.cpp
|  
* commit 677a73bd21a09298b1e5012a04243476521416a7
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Apr 8 10:32:20 2008 +0000
| 
|     interface:
|     - Fix double free corruption in SGInterface::a_get_classifier.
|     - Fix python examples for clustering.
| 
| M	python/examples/all_clustering.py
| M	src/interface/SGInterface.cpp
|  
* commit e410915c83b23a2e367e74eb3dcfd7fd86b8955a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 7 21:48:09 2008 +0000
| 
|     add a get_w / set_w to linear kernel
| 
| M	src/classifier/LinearClassifier.i
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearKernel.i
|  
* commit c3c6e6f80835ae80023177dd6d821e2fcb9061af
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Apr 7 15:20:41 2008 +0000
| 
|     interface:
|     - Renamed graphical examples for python-modular to plots and moved one example
|       file into that directory.
| 
| D	python-modular/examples/all_evaluation.py
| D	python-modular/examples/matplotlib/multiple_smvs.py
| D	python-modular/examples/matplotlib/numpy_krr.py
| D	python-modular/examples/matplotlib/numpy_krr_sinc.py
| D	python-modular/examples/matplotlib/numpy_lda.py
| D	python-modular/examples/matplotlib/numpy_svm.py
| D	python-modular/examples/matplotlib/numpy_svmlin.py
| D	python-modular/examples/matplotlib/numpy_svr_sinc.py
| D	python-modular/examples/matplotlib/util.py
| A	python-modular/examples/plots/all_evaluation.py
| A	python-modular/examples/plots/multiple_smvs.py
| A	python-modular/examples/plots/numpy_krr.py
| A	python-modular/examples/plots/numpy_krr_sinc.py
| A	python-modular/examples/plots/numpy_lda.py
| A	python-modular/examples/plots/numpy_svm.py
| A	python-modular/examples/plots/numpy_svmlin.py
| A	python-modular/examples/plots/numpy_svr_sinc.py
| A	python-modular/examples/plots/util.py
|  
* commit c829ae8a69e634a8989bd6b4136106c8d852e85c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Apr 7 15:18:39 2008 +0000
| 
|     interface:
|     - Added examples for Python interface.
|     - Fixed typo in GUIDistance.
|     - Made error message in GUIKernel more useful.
|     - Fixed bug in SGInterface.
| 
| A	python/examples/all_classifier.py
| A	python/examples/all_clustering.py
| A	python/examples/all_distance.py
| A	python/examples/all_distribution.py
| A	python/examples/all_kernels.py
| A	python/examples/all_preproc.py
| A	python/examples/all_regression.py
| D	python/examples/hmm.py
| A	python/examples/plots/svm_classificaton.py
| A	python/examples/plots/svr_regression.py
| D	python/examples/svm_classificaton.py
| D	python/examples/svr_regression.py
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/interface/SGInterface.cpp
|  
* commit 6241697d9daeb3c74c7f923880911fa2c21410d8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Apr 6 11:29:52 2008 +0000
| 
|     interface:
|     - Implemented set_int/real/bool for all 4 interfaces.
| 
| M	R/examples/svm_classification.R
| M	matlab_and_octave/examples/svm_classification.m
| M	python/examples/svm_classificaton.py
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit d4272c27c5db44dfddd6d95ab8b0bbab670536b5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 6 11:05:01 2008 +0000
| 
|     - fix hmm example
|     - fix several naming conflicts (e.g. result is used by swig for return arguments)
|     - get modular R interface to at least compile
| 
| M	matlab_and_octave/examples/hmm.m
| M	src/.scrub_docstrings.py
| M	src/Makefile
| M	src/clustering/Hierarchical.h
| M	src/clustering/KMeans.h
| M	src/configure
| M	src/features/Features.i
| M	src/features/SimpleFeatures.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/lib/DynamicArray.h
| M	src/sg.m
|  
* commit 86afc35c668c7443b2952e33e035a519cab18ddc
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Apr 6 09:55:03 2008 +0000
| 
|     interface:
|     - Replaced set/get_*_matrix by set/get_*_vector where appropriate.
|     - Fixed octave-incompatible example.
| 
| M	matlab_and_octave/examples/hmm.m
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 501ba0976f8c19d13ecbd8d7b7cc73469f6d4e30
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 6 07:56:07 2008 +0000
| 
|     - delete remainders of old interfaces and minor compile and cosmetic fixes
|     - update TODO
| 
| M	src/TODO
| M	src/gui/GUI.h
| D	src/gui/Python.h
| M	src/gui/TextGUI.h
| D	src/guilib/GUIMatlab.cpp
| M	src/interface/MatlabInterface.cpp
| M	src/interface/OctaveInterface.cpp
| M	src/interface/PythonInterface.cpp
| M	src/interface/RInterface.cpp
| M	src/lib/R.h
| M	src/lib/Signal.cpp
| M	src/lib/io.cpp
|  
* commit 3c846da4d2cfa5aadc5b116a5dd9360e6648bac8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 6 07:06:18 2008 +0000
| 
|     - add signal handling for octave
|     - attempt to get signal handling for R/python to work - it may not - we should
|     use a different (cleaner) mechanism anyway: set a flag when ctrl-c occured, in
|     long loops check that flag every now and then and then return
|     - put extension includes in lib/{R,octave,python,matlab}.h
|     - remove old (and now obsolete) interface files
| 
| M	src/classifier/svm/SVM_light.cpp
| D	src/gui/Matlab.cpp
| D	src/gui/Octave.cpp
| D	src/gui/Python.cpp
| D	src/gui/R.cpp
| D	src/guilib/GUIMatlab.h
| D	src/guilib/GUIOctave.cpp
| D	src/guilib/GUIOctave.h
| D	src/guilib/GUIPython.cpp
| D	src/guilib/GUIPython.h
| D	src/guilib/GUIR.cpp
| D	src/guilib/GUIR.h
| M	src/interface/MatlabInterface.cpp
| M	src/interface/OctaveInterface.cpp
| M	src/interface/RInterface.cpp
| A	src/lib/R.h
| M	src/lib/Signal.cpp
| A	src/lib/octave.h
|  
* commit 1aa0237e0a5fc09ac27502d069a442e3a893e3bd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 4 17:18:30 2008 +0000
| 
|     mostly fixed static python interface (set/get features etc)
|     fixed examples
| 
| A	python/examples/hmm.py
| M	python/examples/svm_classificaton.py
| M	python/examples/test_mkl.py
| M	src/interface/OctaveInterface.cpp
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
|  
* commit 4db2d14b49ebec7e207dc9bee8ff439ac2437e46
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 4 13:36:01 2008 +0000
| 
|     rename matlab dir to matlab_and_octave to reflect that the examples will run in both languages
| 
| D	matlab/examples/cluster_hierarchical.m
| D	matlab/examples/cluster_kmeans.m
| D	matlab/examples/entropy.m
| D	matlab/examples/hmm.m
| D	matlab/examples/lda_classification.m
| D	matlab/examples/liblinear.m
| D	matlab/examples/lik_kernel.m
| D	matlab/examples/local_alignment_kernel.m
| D	matlab/examples/lpboost.m
| D	matlab/examples/lpm.m
| D	matlab/examples/markov_chain.m
| D	matlab/examples/mkl_classify_christmas_star.m
| D	matlab/examples/mkl_pseudo_dna.m
| D	matlab/examples/mkl_regression_3sine_waves.m
| D	matlab/examples/mkl_regression_sine.m
| D	matlab/examples/spec_interp.m
| D	matlab/examples/spec_kernel.m
| D	matlab/examples/string_features.m
| D	matlab/examples/stringfeatures.m
| D	matlab/examples/svm_classification.m
| D	matlab/examples/svm_multiclass.m
| D	matlab/examples/svmocas.m
| D	matlab/examples/svmsgd.m
| D	matlab/examples/svr_regression.m
| D	matlab/examples/test_classifier.m
| D	matlab/examples/test_combined.m
| D	matlab/examples/test_combined2.m
| D	matlab/examples/test_complex_scenario.m
| D	matlab/examples/test_custom_kernel.m
| D	matlab/examples/test_gnpp_svm.m
| D	matlab/examples/test_interface.m
| D	matlab/examples/test_kernel_optimization.m
| D	matlab/examples/test_knn.m
| D	matlab/examples/test_l2svm.m
| D	matlab/examples/test_linadd.m
| D	matlab/examples/test_linear_methods.m
| D	matlab/examples/test_mkl.m
| D	matlab/examples/test_mkl_svr.m
| D	matlab/examples/test_mkl_svr_wrapper.m
| D	matlab/examples/test_ocas_normalization.m
| D	matlab/examples/test_one_class_svm.m
| D	matlab/examples/test_poim_wds.m
| D	matlab/examples/test_regression.m
| D	matlab/examples/test_regression_linadd.m
| D	matlab/examples/test_regression_mkl.m
| D	matlab/examples/test_sliding_window.m
| D	matlab/examples/test_sparse.m
| D	matlab/examples/test_sparse_methods.m
| D	matlab/examples/test_spec_consensus.m
| D	matlab/examples/test_spec_interp.m
| D	matlab/examples/test_subgradsvm.m
| D	matlab/examples/test_svm_multiclass.m
| D	matlab/examples/test_svmlight_libsvm.m
| D	matlab/examples/test_svrlight_libsvr.m
| D	matlab/examples/test_wd_kernel.m
| D	matlab/examples/test_wd_linadd.m
| D	matlab/examples/test_wd_wds_parallel.m
| D	matlab/examples/test_wdocas.m
| D	matlab/examples/test_wds_consensus.m
| D	matlab/examples/test_wds_kernel.m
| D	matlab/examples/test_wdshift_position_weights.m
| D	matlab/examples/test_weighted_spectrum.m
| D	matlab/examples/tools/PCACut.m
| D	matlab/examples/tools/README
| D	matlab/examples/tools/calcroc.m
| D	matlab/examples/tools/calcrocscore.m
| D	matlab/examples/tools/graph_hmm.m
| D	matlab/examples/tools/graph_hmm2.m
| D	matlab/examples/tools/model_to_graph.m
| D	matlab/examples/tools/plotroc.m
| D	matlab/examples/tools/read_feature_matrix.m
| D	matlab/examples/tools/readroc.m
| D	matlab/examples/tools/save_as_ascii.m
| D	matlab/examples/tools/save_as_double.m
| D	matlab/examples/wd_kernel.m
| D	matlab/examples/wds_consensus.m
| D	matlab/examples/wds_kernel.m
| D	matlab/examples/wds_shift_interp.m
| D	matlab/examples/weighted_spec.m
| D	matlab/testcases/WeightedDegreeString.m
| D	matlab/testcases/run_matlab.sh
| D	matlab/testcases/run_octave.sh
| D	matlab/testcases/test_chi2_kernel.m
| D	matlab/testcases/test_cws_kernel.m
| D	matlab/testcases/test_gaussian_kernel.m
| D	matlab/testcases/test_kernels.m
| D	matlab/testcases/test_linear_kernel.m
| D	matlab/testcases/test_matlab.m
| D	matlab/testcases/test_octave.m
| D	matlab/testcases/test_poly_kernel.m
| D	matlab/testcases/test_sigmoid_kernel.m
| D	matlab/testcases/test_svm.m
| D	matlab/testcases/test_wdchar_kernel.m
| D	matlab/testcases/test_wds_kernel.m
| A	matlab_and_octave/examples/cluster_hierarchical.m
| A	matlab_and_octave/examples/cluster_kmeans.m
| A	matlab_and_octave/examples/entropy.m
| A	matlab_and_octave/examples/hmm.m
| A	matlab_and_octave/examples/lda_classification.m
| A	matlab_and_octave/examples/liblinear.m
| A	matlab_and_octave/examples/lik_kernel.m
| A	matlab_and_octave/examples/local_alignment_kernel.m
| A	matlab_and_octave/examples/lpboost.m
| A	matlab_and_octave/examples/lpm.m
| A	matlab_and_octave/examples/markov_chain.m
| A	matlab_and_octave/examples/mkl_classify_christmas_star.m
| A	matlab_and_octave/examples/mkl_pseudo_dna.m
| A	matlab_and_octave/examples/mkl_regression_3sine_waves.m
| A	matlab_and_octave/examples/mkl_regression_sine.m
| A	matlab_and_octave/examples/spec_interp.m
| A	matlab_and_octave/examples/spec_kernel.m
| A	matlab_and_octave/examples/string_features.m
| A	matlab_and_octave/examples/stringfeatures.m
| A	matlab_and_octave/examples/svm_classification.m
| A	matlab_and_octave/examples/svm_multiclass.m
| A	matlab_and_octave/examples/svmocas.m
| A	matlab_and_octave/examples/svmsgd.m
| A	matlab_and_octave/examples/svr_regression.m
| A	matlab_and_octave/examples/test_classifier.m
| A	matlab_and_octave/examples/test_combined.m
| A	matlab_and_octave/examples/test_combined2.m
| A	matlab_and_octave/examples/test_complex_scenario.m
| A	matlab_and_octave/examples/test_custom_kernel.m
| A	matlab_and_octave/examples/test_gnpp_svm.m
| A	matlab_and_octave/examples/test_interface.m
| A	matlab_and_octave/examples/test_kernel_optimization.m
| A	matlab_and_octave/examples/test_knn.m
| A	matlab_and_octave/examples/test_l2svm.m
| A	matlab_and_octave/examples/test_linadd.m
| A	matlab_and_octave/examples/test_linear_methods.m
| A	matlab_and_octave/examples/test_mkl.m
| A	matlab_and_octave/examples/test_mkl_svr.m
| A	matlab_and_octave/examples/test_mkl_svr_wrapper.m
| A	matlab_and_octave/examples/test_ocas_normalization.m
| A	matlab_and_octave/examples/test_one_class_svm.m
| A	matlab_and_octave/examples/test_poim_wds.m
| A	matlab_and_octave/examples/test_regression.m
| A	matlab_and_octave/examples/test_regression_linadd.m
| A	matlab_and_octave/examples/test_regression_mkl.m
| A	matlab_and_octave/examples/test_sliding_window.m
| A	matlab_and_octave/examples/test_sparse.m
| A	matlab_and_octave/examples/test_sparse_methods.m
| A	matlab_and_octave/examples/test_spec_consensus.m
| A	matlab_and_octave/examples/test_spec_interp.m
| A	matlab_and_octave/examples/test_subgradsvm.m
| A	matlab_and_octave/examples/test_svm_multiclass.m
| A	matlab_and_octave/examples/test_svmlight_libsvm.m
| A	matlab_and_octave/examples/test_svrlight_libsvr.m
| A	matlab_and_octave/examples/test_wd_kernel.m
| A	matlab_and_octave/examples/test_wd_linadd.m
| A	matlab_and_octave/examples/test_wd_wds_parallel.m
| A	matlab_and_octave/examples/test_wdocas.m
| A	matlab_and_octave/examples/test_wds_consensus.m
| A	matlab_and_octave/examples/test_wds_kernel.m
| A	matlab_and_octave/examples/test_wdshift_position_weights.m
| A	matlab_and_octave/examples/test_weighted_spectrum.m
| A	matlab_and_octave/examples/tools/PCACut.m
| A	matlab_and_octave/examples/tools/README
| A	matlab_and_octave/examples/tools/calcroc.m
| A	matlab_and_octave/examples/tools/calcrocscore.m
| A	matlab_and_octave/examples/tools/graph_hmm.m
| A	matlab_and_octave/examples/tools/graph_hmm2.m
| A	matlab_and_octave/examples/tools/model_to_graph.m
| A	matlab_and_octave/examples/tools/plotroc.m
| A	matlab_and_octave/examples/tools/read_feature_matrix.m
| A	matlab_and_octave/examples/tools/readroc.m
| A	matlab_and_octave/examples/tools/save_as_ascii.m
| A	matlab_and_octave/examples/tools/save_as_double.m
| A	matlab_and_octave/examples/wd_kernel.m
| A	matlab_and_octave/examples/wds_consensus.m
| A	matlab_and_octave/examples/wds_kernel.m
| A	matlab_and_octave/examples/wds_shift_interp.m
| A	matlab_and_octave/examples/weighted_spec.m
| A	matlab_and_octave/testcases/WeightedDegreeString.m
| A	matlab_and_octave/testcases/run_matlab.sh
| A	matlab_and_octave/testcases/run_octave.sh
| A	matlab_and_octave/testcases/test_chi2_kernel.m
| A	matlab_and_octave/testcases/test_cws_kernel.m
| A	matlab_and_octave/testcases/test_gaussian_kernel.m
| A	matlab_and_octave/testcases/test_kernels.m
| A	matlab_and_octave/testcases/test_linear_kernel.m
| A	matlab_and_octave/testcases/test_matlab.m
| A	matlab_and_octave/testcases/test_octave.m
| A	matlab_and_octave/testcases/test_poly_kernel.m
| A	matlab_and_octave/testcases/test_sigmoid_kernel.m
| A	matlab_and_octave/testcases/test_svm.m
| A	matlab_and_octave/testcases/test_wdchar_kernel.m
| A	matlab_and_octave/testcases/test_wds_kernel.m
|  
* commit 11b695f9780919b0e0eb58b1c32d23af664ec208
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 4 13:34:27 2008 +0000
| 
|     - compile fix for octave
|     - use set_real_vector for HMM in SGInterface
|     - R interface cleanups
|     - use a single directory for octave and matlab as octave 3.0 supports all
|     matlab types/functions now
| 
| M	R/examples/hmm.R
| A	matlab/examples/lik_kernel.m
| A	matlab/examples/markov_chain.m
| A	matlab/examples/spec_kernel.m
| A	matlab/examples/stringfeatures.m
| M	matlab/examples/svm_classification.m
| A	matlab/examples/wd_kernel.m
| A	matlab/examples/wds_kernel.m
| D	matlab/testcases/run.sh
| A	matlab/testcases/run_matlab.sh
| A	matlab/testcases/run_octave.sh
| A	matlab/testcases/test_octave.m
| A	matlab/testcases/test_wdchar_kernel.m
| D	octave/examples/hmm.m
| D	octave/examples/lik_kernel.m
| D	octave/examples/markov_chain.m
| D	octave/examples/spec_kernel.m
| D	octave/examples/stringfeatures.m
| D	octave/examples/svm_classification.m
| D	octave/examples/svr_regression.m
| D	octave/examples/wd_kernel.m
| D	octave/examples/wds_kernel.m
| D	octave/testcases/run.sh
| D	octave/testcases/test_chi2_kernel.m
| D	octave/testcases/test_gaussian_kernel.m
| D	octave/testcases/test_kernels.m
| D	octave/testcases/test_linear_kernel.m
| D	octave/testcases/test_octave.m
| D	octave/testcases/test_poly_kernel.m
| D	octave/testcases/test_sigmoid_kernel.m
| D	octave/testcases/test_wdchar_kernel.m
| M	src/configure
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 9de8b69d921f6a31804aadccc0f388d985296bd9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Apr 3 15:56:08 2008 +0000
| 
|     interface:
|     - Added some safeguards to PythonInterface.
|     - Broke out set_real_matrix for debugging; it is still not working
|       properly.
| 
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
|  
* commit 81d006489b4b39ee22f6520c6703d4f2ca27afee
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 3 13:52:14 2008 +0000
| 
|     fix examples for new R interface. we still need to fix get/set vectors for all
|     interfaces
| 
| M	R/examples/hmm.R
| M	R/examples/svm_classification.R
| M	R/examples/svr_regression.R
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
|  
* commit 0a492945e808a1e5de7d03aec5bb10d3eeeac336
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Apr 3 12:11:34 2008 +0000
| 
|     interface:
|     - Fixed compilation and implemented create_return_values() in PythonInterface.
| 
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
|  
* commit 635a259cd194944b8778953ff747eb4272431d67
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 3 11:08:26 2008 +0000
| 
|     completed R interface - not many datatypes are supported in R :(
| 
| M	src/interface/RInterface.cpp
|  
* commit 1633e22ba1d3f28395a44c33dde2a10923a7a96c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 3 10:21:49 2008 +0000
| 
|     - argh, we need to link to -llapack too as some functions are not clapack
|     - remove submit_return_values, and modify create_return_values, to return true
|     if successfull. change interfaces accordingly
| 
| M	src/configure
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit d53f2595e493393ca328cf471981a88cd8d2ed5f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 3 09:23:53 2008 +0000
| 
|     we actually require atlas for compilation, not lapack. (clapack_* functions are
|     required) thus always link with -llapack_atlas
| 
| M	src/configure
|  
* commit 6c0aad855b109dff5c85bfba3a1798a431a7e06f
| Author: Yaroslav Halchenko <yoh@psychology.rutgers.edu>
| Date:   Wed Apr 2 15:09:13 2008 +0000
| 
|     fix possible segfault in SparseFeatures.h (thanks to Andrey T)
| 
| M	src/features/SparseFeatures.h
|  
* commit dd754e8d453ba9fee9084040ca3fcbdd2fd8130e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 2 15:03:07 2008 +0000
| 
|     test swig version
| 
| M	src/configure
|  
* commit 2d5aa1ebb00345275acdac88f4cf4316502d235a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Apr 2 14:09:33 2008 +0000
| 
|     interface:
|     - Fixed initialisation of PythonInterface.
|     - Modified examples to use new interface.
| 
| M	python/examples/svm_classificaton.py
| M	python/examples/svr_regression.py
| M	python/examples/test_mkl.py
| M	src/interface/PythonInterface.cpp
|  
* commit 3c5d38d01050dffa2638b5c9693cc05372a76116
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 2 13:42:02 2008 +0000
| 
|     potentially fix a bug in make contiguous
| 
| M	src/lib/python_typemaps.i
|  
* commit a603215694abd11ba2b51d2182eb47cf3a74878b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Apr 1 14:34:08 2008 +0000
| 
|     interface:
|     - Implemented methods for PythonInterface - they compile but most likely won't work.
| 
| M	src/interface/PythonInterface.cpp
|  
* commit 222f7a29ce0f38de1cf28ddc1fe5127639da3726
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 1 10:45:36 2008 +0000
| 
|     get/set_features for R interface: note that the number of arguments check in
|     interface/SGInterface.cpp was disabled - we need an interface change here
| 
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
|  
* commit 850988cc7990a13f8f3cba979953c2991b6dd437
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Mar 31 17:33:21 2008 +0000
| 
|     interface:
|     - Fixed a copy&paste bug.
| 
| M	src/interface/MatlabInterface.cpp
|  
* commit 20c4121e8aabc62c832e9e14009f51dbbc0827d4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Mar 31 17:17:31 2008 +0000
| 
|     interface:
|     - Improved handling of cell arrays in get_argument_type in MatlabInterface.
| 
| M	src/interface/MatlabInterface.cpp
|  
* commit 3e41b38b5ed8d42492cf1b32454802ca79d2f47e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Mar 31 17:02:43 2008 +0000
| 
|     interface:
|     - Implemented get_argument_type() in PythonInterface.
| 
| M	src/interface/PythonInterface.cpp
|  
* commit c4c3da542700c52f93a9980d20865b1bc693ddce
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Mar 31 13:13:31 2008 +0000
| 
|     interface:
|     - Made Python interface compile again.
| 
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/SGInterface.h
|  
* commit a88b257f37b26d156f1957617ebecd19caa8a3a7
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Mar 30 16:38:55 2008 +0000
| 
|     interface:
|     - Fixed an erroneous delete[] (and now unnecessary copying of data) while
|       checking octave interface on matlab examples.
| 
| M	src/interface/OctaveInterface.cpp
| M	src/interface/SGInterface.cpp
|  
* commit c4f0149d6e1747cd8cf77b1bd59416d8ca0e45a9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Mar 29 19:59:16 2008 +0000
| 
|     get R interface to compile again
| 
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
|  
* commit 7b53b61bb652a340cc18a304f17bc337b59a1e90
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Mar 29 18:55:38 2008 +0000
| 
|     interface:
|     - Got rid of SINGLE_STRING
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/OctaveInterface.cpp
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 218d90fa93229ddec930c4ff2cf2a23075b44bc6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 28 21:17:49 2008 +0000
| 
|     free the matrix as long as num_vectors is still correct
| 
| M	src/features/SparseFeatures.h
|  
* commit 8118b13c103ee204b406896adfac59482c179eb3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 28 16:17:03 2008 +0000
| 
|     octave interface mostly works now (at least svm_classification, test_wd_kernel,
|     		svr_regression ...)
| 
| M	src/interface/OctaveInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit dda0c45ca60ea5d0e20889f3c8f1b9475ed44920
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 28 13:24:00 2008 +0000
| 
|     don't remove configure.log when --help is called
| 
| M	src/configure
|  
* commit 857beea97289e8a1abcfbad7f3b469ca1d1bc79b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 28 11:39:47 2008 +0000
| 
|     - fix another SG_REF / UNREF mismatch: the kernel get_lhs()/rhs() functions need
|     to increment reference counts when returning a feature object, use rhs/lhs
|     internally and otherwise make sure that SG_UNREF is called for each SG_REF
|     (same for CDistance)
|     - add an assertion for get_features to not crash if no feature object is available
| 
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVMOneClass.cpp
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/KMeans.cpp
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/interface/SGInterface.cpp
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/regression/KRR.cpp
|  
* commit 3455202a2aa644cf9a227a52847f5bf46a16aa36
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 28 10:23:19 2008 +0000
| 
|     adjust for changes in pluginestimate
| 
| M	src/guilib/GUIPluginEstimate.cpp
|  
* commit a3e42ee225818e54f651553c78f783352c1ecef1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 28 09:13:34 2008 +0000
| 
|     - fix several further memory leaks
|     - make (Simple)LocalityImproved kernel thread safe
|     - PluginEstimate is now derived from classifier (removed obsolete test
|     		function, make classifier framework compatible and adjust test
|     		suite/examples)
| 
| M	python-modular/examples/all_kernels.py
| M	python-modular/testcases/kernel.py
| M	src/classifier/LinearClassifier.h
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/SparseLinearClassifier.h
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/KMeans.cpp
| M	src/clustering/KMeans.h
| M	src/distance/SparseEuclidianDistance.cpp
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/LocalAlignmentStringKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.h
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
|  
* commit d876fb173b2440cec3ac3f19246724112c88aeb4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 23:34:32 2008 +0000
| 
|     one further leak (forgotten to free block weights on object destruction)
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit bd836294cefde53b35468dd7f713239eb6814d54
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 23:25:07 2008 +0000
| 
|     fix several further memory leaks and a stupid double free
| 
| M	src/classifier/LinearClassifier.cpp
| M	src/classifier/LinearClassifier.h
| M	src/classifier/LinearClassifier.i
| M	src/classifier/SparseLinearClassifier.h
| M	src/classifier/SparseLinearClassifier.i
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/LibSVMMultiClass.cpp
| M	src/classifier/svm/MPDSVM.cpp
| M	src/classifier/svm/MultiClassSVM.i
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM.i
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/ssl.cpp
| M	src/features/Labels.cpp
| M	src/features/SparseFeatures.h
|  
* commit 2a8520ce85dda9e3dd2b6f2b44bda1c93e2bd534
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 19:26:13 2008 +0000
| 
|     get_labels() returns a new object so mark it with %newobject
| 
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM.i
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
|  
* commit 98875e6bc20f22eceaee50b28629ff346f3576a8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 18:01:32 2008 +0000
| 
|     in all set_ routines, UNREF the old objects first before overwriting them, this should fix another set of memory leaks like:
|     
|     gk=GaussianKernel(f1,f2,sigma)
|     	..
|     gk.init(f3,f4)
|     	..
|     gk.init(f5,f6)
| 
| M	src/classifier/Classifier.h
| M	src/classifier/LinearClassifier.h
| M	src/classifier/SparseLinearClassifier.h
| M	src/distance/DistanceMachine.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/KernelMachine.h
|  
* commit bb49e9aec40294ffe3efd1d2901f22dfbe72f3f2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 17:30:12 2008 +0000
| 
|     this should fix another couple of leaks for linear/sparselinear classifiers and
|     distancemachines
| 
| M	src/classifier/KNN.cpp
| M	src/classifier/LDA.cpp
| M	src/classifier/LPBoost.cpp
| M	src/classifier/LPM.cpp
| M	src/classifier/Perceptron.cpp
| M	src/classifier/SubGradientLPM.cpp
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/KMeans.cpp
|  
* commit d420458a839f99d3b967cdacb55613ca4ff9017c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 16:56:00 2008 +0000
| 
|     fix double free
| 
| M	src/classifier/svm/SVMSGD.cpp
|  
* commit 5576ec8992343a5caecc4faf48d57f2639c8e2ac
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 16:50:07 2008 +0000
| 
|     fix missing SG_REF/UNREFs on many places: whenever possible use the
|     set_features/set_labels/set_kernel functions as they will take care of
|     SG_REFfing things. UNREFfing is done in the baseclasses, like
|     DistanceMachine,KernelMachine,Classifier, Linear/SparseLinearClassifier
| 
| M	src/classifier/LDA.cpp
| M	src/classifier/LinearClassifier.cpp
| M	src/classifier/LinearClassifier.h
| M	src/classifier/Perceptron.cpp
| M	src/classifier/SparseLinearClassifier.cpp
| M	src/classifier/SparseLinearClassifier.h
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMSGD.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/distance/DistanceMachine.cpp
| M	src/distance/DistanceMachine.h
| M	src/interface/OctaveInterface.cpp
|  
* commit 9a97feb659637487f4c36ab0be1286e9c3f4eaf4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 15:30:33 2008 +0000
| 
|     - link octave w/ -lcruft (for exception handling)
|     - get/set features at least for double matrices works
| 
| M	src/configure
| M	src/interface/MatlabInterface.cpp
| M	src/interface/OctaveInterface.cpp
|  
* commit 04dcb662b35183fa402a78e5ac5e204168a21c23
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Mar 27 15:25:03 2008 +0000
| 
|     interface:
|     - Went through all matlab examples, except those requiring CPLEX and aborted
|       those taking longer than 5 minutes. Fixed some of the examples and fixed the
|       new interface in the process.
| 
| M	matlab/examples/cluster_hierarchical.m
| M	matlab/examples/cluster_kmeans.m
| M	matlab/examples/string_features.m
| M	matlab/examples/test_gnpp_svm.m
| A	matlab/examples/test_interface.m
| M	matlab/examples/test_ocas_normalization.m
| M	matlab/examples/test_sliding_window.m
| M	matlab/examples/test_spec_consensus.m
| M	matlab/examples/test_svm_multiclass.m
| M	matlab/examples/test_svmlight_libsvm.m
| M	matlab/examples/test_wdocas.m
| M	matlab/examples/test_wds_consensus.m
| M	matlab/examples/test_wdshift_position_weights.m
| M	matlab/examples/wds_consensus.m
| M	matlab/examples/wds_shift_interp.m
| M	src/interface/MatlabInterface.cpp
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit b5cd46e4f4a383cc1e436641f1c3e563c5e4b1e0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 13:41:42 2008 +0000
| 
|     get octave interface to at least compile again
| 
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
|  
* commit eb423014f748cfc75189713fc2d37332dfd9e1ed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 11:00:25 2008 +0000
| 
|     use kernel instead of get_kernel() for all classes derived from CKernelMachine
|     to fix the 'get_kernel()' memory leak
| 
| M	src/classifier/svm/GMNPSVM.cpp
| M	src/classifier/svm/GNPPSVM.cpp
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVMMultiClass.cpp
| M	src/classifier/svm/LibSVMOneClass.cpp
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/regression/KRR.cpp
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
|  
* commit 57fa631a163208a1159618f005617e4cc219a515
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 10:31:32 2008 +0000
| 
|     based on yaroslavs patch fix the memoryleaks occuring on load and
|     set_(sparse)_feature_matrix
| 
| M	src/features/ByteFeatures.cpp
| M	src/features/CharFeatures.cpp
| M	src/features/FKFeatures.cpp
| M	src/features/IntFeatures.cpp
| M	src/features/RealFeatures.cpp
| M	src/features/RealFileFeatures.cpp
| M	src/features/ShortFeatures.cpp
| M	src/features/ShortRealFeatures.cpp
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
|  
* commit c104a93ca28dde42234fda830c0f78565628678d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 10:07:14 2008 +0000
| 
|     attempt to fix the memory leaks for get_labels():
|     	now we don't use get_labels in the classes derived from CClassifier, but
|     	just the protected member variable 'labels' directly
| 
| M	src/classifier/KNN.cpp
| M	src/classifier/KernelPerceptron.cpp
| M	src/classifier/LDA.cpp
| M	src/classifier/LPBoost.cpp
| M	src/classifier/LPM.cpp
| M	src/classifier/Perceptron.cpp
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/svm/CPLEXSVM.cpp
| M	src/classifier/svm/GMNPSVM.cpp
| M	src/classifier/svm/GNPPSVM.cpp
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVMMultiClass.cpp
| M	src/classifier/svm/MPDSVM.cpp
| M	src/classifier/svm/MPDSVM.h
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMSGD.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/regression/KRR.cpp
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/SVR_light.cpp
|  
* commit f397392c9f18ad834bbc0c573cd33c0dfbff4712
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Mar 26 17:28:39 2008 +0000
| 
|     interface:
|     - Fixes, fixes, fixes!
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/SGInterface.cpp
|  
* commit e3392170688fc97de348cf67ec991eb2fd5bbb38
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 26 16:31:27 2008 +0000
| 
|     use mxGetPr instead of mxGetData for sparse matrix
| 
| M	src/interface/MatlabInterface.cpp
|  
* commit 29a8392ccddb26227775715366e98deaa0623ea7
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Mar 26 16:23:07 2008 +0000
| 
|     interface:
|     - Getting closer...
| 
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit ac99d48b05a784cdf11b6446dcdc98ea9ef6f90a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 26 16:16:43 2008 +0000
| 
|     use nnz for SET_SPARSe
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
|  
* commit 5b27e690f57e937275175c6b887dd0eddaefb450
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Mar 26 16:04:36 2008 +0000
| 
|     interface:
|     - Even more fixes, still not quite working
|     lib/io:
|     - Added macro NOTIMPLEMENTED
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/lib/io.h
|  
* commit bf80477214207c54c45d0af570b860f39e495202
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 26 15:54:35 2008 +0000
| 
|     another attempt to fix stringf
| 
| M	src/interface/MatlabInterface.cpp
|  
* commit dcd0200aeb3b839fe6e5a21209e08634b3a931bb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 26 15:29:43 2008 +0000
| 
|     bug fix in SET_STRINGLIST
| 
| M	src/interface/MatlabInterface.cpp
|  
* commit 63d943ba5c30a78c672a4a0d1da28240977d4cc0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 26 15:20:40 2008 +0000
| 
|     add get_featurs functions to string features
| 
| M	src/features/StringFeatures.h
|  
* commit af93fbf64d86ae2b7ffafd564dcb7e53f8252e3b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 26 15:06:46 2008 +0000
| 
|     fix shortreal/int features
| 
| M	src/features/IntFeatures.cpp
| A	src/features/IntFeatures.i
| M	src/features/ShortRealFeatures.cpp
| M	src/features/ShortRealFeatures.h
| A	src/features/ShortRealFeatures.i
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/SparseFeatures.h
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/common.h
|  
* commit e688f5ea4ee34320ab006932651850dd10155b1e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Mar 26 14:52:03 2008 +0000
| 
|     interface:
|     - Some more tidbits
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/SGInterface.cpp
|  
* commit 1c37e4dcb6e0cdc0a43bd0bd6e504dbde7c3c060
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 26 14:41:10 2008 +0000
| 
|     add short/int features
| 
| A	src/features/IntFeatures.cpp
| A	src/features/IntFeatures.h
| A	src/features/ShortRealFeatures.cpp
| A	src/features/ShortRealFeatures.h
| M	src/kernel/GaussianKernel.cpp
|  
* commit de230408fcd426860a66855cf8921c845c28cf18
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Mar 26 11:26:26 2008 +0000
| 
|     interface:
|     - First stab at getting set_features to work.
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit d26f12b7d81db6566405f3cf3961b0ca19a8c96d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 25 17:24:25 2008 +0000
| 
|     use macros for everthing in matlab interface
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/SGInterface.h
|  
* commit 5bde3c623249389d78ca4f87ac38bc783713d1a1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Mar 25 17:19:42 2008 +0000
| 
|     interface:
|     - Removed interface helper classes
| 
| M	src/interface/SGInterface.h
| D	src/interface/SGInterfaceDataType.h
| D	src/interface/SGInterfaceMatrix.h
| D	src/interface/SGInterfaceStringList.h
| D	src/interface/SGInterfaceVector.h
|  
* commit 98703658cdd462242fd1f765ddd0412cc1cee5f8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Mar 25 17:15:45 2008 +0000
| 
|     interface:
|     - Switch from InterfaceVector/Matrix/StringList back to old (but improved)
|       functions get/set_<type>_vector/matrix/string_list
| 
| M	src/interface/SGInterface.cpp
|  
* commit 578a45a8c69214213a1de7d3c5788c008751bebf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 25 16:23:13 2008 +0000
| 
|     use macros for interface
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/SGInterface.h
|  
* commit ccbbe801ebd2cc7c2b2e6b25dc05d8f45b42af3d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 25 07:44:26 2008 +0000
| 
|     fall back magic to -lutil and -ldl
| 
| M	src/configure
|  
* commit edb7a9b7419370b12f0f0df047caf781ff1d4f51
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 20 17:25:15 2008 +0000
| 
|     add missing model=NULL
| 
| M	src/classifier/svm/LibSVMOneClass.cpp
|  
* commit cf87d19c246fb932c771da3eca4744d3d20e2d8f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 20 17:06:36 2008 +0000
| 
|     fix leak also for libsvmone/multi class
| 
| M	src/classifier/svm/LibSVMMultiClass.cpp
| M	src/classifier/svm/LibSVMOneClass.cpp
|  
* commit 463b1ddce384bb9d5c0ab490fd2f21868cf45860
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Mar 20 16:52:17 2008 +0000
| 
|     kernel:
|     - Added patch from 2706+raetsch: fixed a bug in clean_kernel for the WD kernel
| 
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit a214847bd3b74db61e3a9756cea5269e2df1c449
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Mar 20 15:44:17 2008 +0000
| 
|     included Alexander binders bugfix.
| 
| M	src/classifier/svm/LibSVM.cpp
|  
* commit 13be502a976b6af7d27a76579384739c607d82ed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 20 05:39:09 2008 +0000
| 
|     fix compilation if sqrtl is not available (fall back to sqrt)
| 
| M	src/configure
| M	src/lib/Mathematics.h
|  
* commit 2a4254b9ac6b5d563dd77ae70962481ed28bc22a
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Mar 19 19:41:16 2008 +0000
| 
|     included Alexander Binders bugfix.
| 
| M	src/classifier/svm/MultiClassSVM.cpp
|  
* commit d16cd05c5e5622d80a7481088a91e67889b635af
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Mar 17 13:41:56 2008 +0000
| 
|     interface:
|     - Removed most const stuff, as it seemed too much hassle
|     - Converted interface methods to use new InterfaceVector/Matrix/StringList
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterfaceMatrix.h
| M	src/interface/SGInterfaceStringList.h
| M	src/interface/SGInterfaceVector.h
|  
* commit 564bbddcd66b352f2c3ccc8c7da4d4c15de5cc9e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Mar 14 17:58:58 2008 +0000
| 
|     interface:
|     - Hopefully this approach sucks less in regard to code duplication, templates
|       and polymorphism.
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| A	src/interface/SGInterfaceDataType.h
| A	src/interface/SGInterfaceMatrix.h
| A	src/interface/SGInterfaceStringList.h
| A	src/interface/SGInterfaceVector.h
|  
* commit 3d75da5572db0cbc3bf880a0d07f405403491cf7
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Mar 10 17:42:20 2008 +0000
| 
|     fixed a minor issue in progress reporting.
| 
| M	src/lib/io.cpp
|  
* commit 69ef85f8e9f3528b86080297f0e0df54dfc105e8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Mar 10 16:07:28 2008 +0000
| 
|     interface:
|     - Fixed a couple of compilation issues
| 
| M	src/interface/OctaveInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.h
|  
* commit c2360024f5adc3e56b30a0eb3bc34877dcac2153
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Mar 10 16:01:00 2008 +0000
| 
|     interface:
|     - A bit of cleanup, made sure that basic input/output still works
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit db0afa875868ad15ce404e023d9c27bcbf38bd39
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Mar 10 09:09:47 2008 +0000
| 
|     clear the cancel_computation flag before starting a new computation.
|     Otherwise, they are all canceled.
| 
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit e969c5f687cfd2a2f250ff230f6b0b397d2ab085
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Mar 7 17:49:16 2008 +0000
| 
|     features:
|     - Fixed typo in docstring
|     interface:
|     - Added remaining methods. set_features and the methods with zillions of
|       parameters need discussion and coding, though. And naturally nothing is
|       bound to work yet. :)
| 
| M	src/features/StringFeatures.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 3fa301aece1a83a136e91d2512536d38bb50b2f0
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Mar 6 17:00:59 2008 +0000
| 
|     interface:
|     - Even more methods
| 
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 702797464333b59c31825560b22df494ac5a4bb9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Mar 6 12:57:08 2008 +0000
| 
|     interface:
|     - Added more methods (best path)
| 
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 7802808a2803e900ccca670ed4766c38fd06ffaa
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Mar 5 19:03:06 2008 +0000
| 
|     interface:
|     - Added a few more methods
|     - Included previously forgotten implementation for F_WORD in C_STRING in
|       get_features
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 480baae00ad391671441365b331ec717ee5fc1d7
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Mar 5 18:26:01 2008 +0000
| 
|     interface:
|     - Scrapped template stuff, seems to be too hard at the moment
|     - Added get/set functions for SHORT/WORD sparse/dense vectors/matrices
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit c87a40b7f2420e0f2408cd105b851f41b5c588e2
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Mar 5 12:47:35 2008 +0000
| 
|     interface:
|     - Added some more functions and made some preparations for templating stuff
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit c5bac79789be6ea6fbccd4cc87c86ef2cb6f9829
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Mar 5 09:54:14 2008 +0000
| 
|     removed debug output
| 
| M	src/kernel/CommWordStringKernel.cpp
|  
* commit 854b5c12774cd2decb6f616a9ad865c6b98b7266
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Mar 5 09:53:16 2008 +0000
| 
|     implemented a speedup for the kernel normalization.
|     This helps when you have many, long sequences with a relatively low degree (<8).
| 
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
|  
* commit e7f801090ecc93e7fdc892c5042413fda01d50a8
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Mar 5 07:28:04 2008 +0000
| 
|     added a function for allowing the direct use of kernel_optimization from python
| 
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
|  
* commit f8ef98d158af7f8f03f76b33acf22cd7265a477d
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Mar 4 14:53:12 2008 +0000
| 
|     removed debug output
| 
| M	src/features/StringFeatures.h
|  
* commit 87836b4a329df0822a40f9e7cf9993982a262012
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Mar 4 14:42:41 2008 +0000
| 
|     *** empty log message ***
| 
| M	src/features/StringFeatures.h
|  
* commit 4bf3dc921a4772a80c3ecee89cffc2edd613067d
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Mar 4 14:42:29 2008 +0000
| 
|     fixed a logical bug, which appears when having more than one
|     preprocessor.
| 
| M	src/features/StringFeatures.h
|  
* commit cbc71e6559c68c74cf6b6a0e0b8f6c35d1c4bd4e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Mar 3 18:26:24 2008 +0000
| 
|     interfaces:
|     - Added methods to get/set char vectors/matrices as need by
|       CSGInterface::a_get_WD_consensus
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 2a22058bb3bd2f3f00435a9a9562a349366a8bf5
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Mar 3 17:52:45 2008 +0000
| 
|     kernel:
|     - Compile fix for WeightedDegreePositionString kernel
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
|  
* commit dcdb181f887924c87fda77171628a177570321cb
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Mar 3 17:52:08 2008 +0000
| 
|     interface:
|     - Added some more interface methods.
| 
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit c24e1b2dc344941766b51eee94f34ae9e942fbd5
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Feb 29 18:19:51 2008 +0000
| 
|     One typemap still has a problem (get_POIM2).
| 
| M	src/kernel/WeightedDegreePositionStringKernel.i
|  
* commit 25cbc43d21e21722f1e7ba25d2fc63488318b4ac
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Feb 29 17:57:03 2008 +0000
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
|  
* commit 1d3c39ef159dd0af50fe170c37b805b5311d48b9
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Feb 29 17:56:17 2008 +0000
| 
|     initial version of a swiggable POIM interface.
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
|  
* commit 6098e304d0937b083610cee0778d86b5673ccb30
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 29 16:57:23 2008 +0000
| 
|     draft: split up poim computation
| 
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.i
|  
* commit 556af955e76b5a54596a24d550ebec4710b90bb0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 29 16:28:23 2008 +0000
| 
|     add set cache size option
| 
| M	src/kernel/Kernel.h
|  
* commit 45413d90908c28f9c92684c2839fc876c6ab1952
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Feb 29 16:17:58 2008 +0000
| 
|     interface:
|     - Added about 1/3 of interface methods in gui/Matlab.cpp to
|       interface/SGInterface.cpp
|     - Introduced a second counter for arguments (now: in and out)
|     - Made set functions to take a const as first argument
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 533899510fa03e0b573f1c88957a14b0a38cdb9f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 29 10:03:37 2008 +0000
| 
|     assume the python libraries are in the standard library paths (should fix a
|     compile failure on opensuse) - not clear if it breaks compilation on OSX etc
| 
| M	src/configure
|  
* commit fc3e003d67dcaf73301b465f2c6bdede3f827946
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 28 20:27:30 2008 +0000
| 
|     this should fix a few more memoryleaks reported by Yaroslav including the one for svmlight (kernel cache not being cleaned up)
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/features/Labels.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/KernelMachine.cpp
|  
* commit 43c11b2ad276e0ddcea56ba7a562a2402c4c1e92
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Feb 28 14:18:46 2008 +0000
| 
|     interface:
|     - All get/set functions should now be implemented and working in MatlabInterface
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/SGInterface.cpp
|  
* commit 084d2e50b5dfa6e6c748baf4a67d0c2074713b50
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Feb 27 17:25:16 2008 +0000
| 
|     interface:
|     - Implemented most set functions for Matlab (sparse not working correctly,
|       though)
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/SGInterface.cpp
|  
* commit 2f25d5cf1a9c7653bee7ff05af21cf09c4d11e06
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 27 16:59:02 2008 +0000
| 
|     fix leak, by deleting history...
| 
| M	src/classifier/svm/GNPPSVM.cpp
|  
* commit df80234a9854e14465a19411f26558aadc726d06
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Feb 27 16:04:50 2008 +0000
| 
|     interface:
|     - Replaced get_current_argument by get_arg_increment and implemented
|       set_arg_increment for the interfaces
|     - Added usage of jump list for accessing Shogun methods in a loop instead of
|       endless case switches.
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 1f9a38a79a08af76ef2169eca686a2e2d17415d4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 26 23:24:41 2008 +0000
| 
|     fix ocas/sgd example
| 
| M	python-modular/examples/all_classifier.py
|  
* commit d310a832584ec9c7cba134d0fe6e804cd53e873f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 26 23:20:18 2008 +0000
| 
|     fix another delete / free mismatch and another leak (in libsvm)
| 
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/LibSVM.cpp
|  
* commit 921dd3c89e5e60dd1fca98f19a184bf6b16e055b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 26 23:14:45 2008 +0000
| 
|     as we own the features we should erase them whenever they are set, and of course also on exit
| 
| M	src/features/SimpleFeatures.h
| M	src/lib/python_typemaps.i
|  
* commit 7c6f290217c4f94ccd8ed37f1bef600bbfc1e2fb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 26 22:41:41 2008 +0000
| 
|     fix delete[] / free mismatch
| 
| M	src/features/SimpleFeatures.h
| M	src/lib/python_typemaps.i
|  
* commit 570328e86c917b840ec5054609975b1bd4bc3ff8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 26 21:36:19 2008 +0000
| 
|     fix compile error with python-modular interface
| 
| M	src/interface/MatlabInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit bd874d76203a81bc62d4df5b9f44f2dbe64a32f6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 26 18:54:54 2008 +0000
| 
|     this should fix the kernel cache memeory leak with gpdtsvm
| 
| M	src/classifier/svm/GPBTSVM.cpp
|  
* commit 1ee21b6bcd28219df8b66acdd2dbb2f201ef3019
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Feb 26 17:04:18 2008 +0000
| 
|     interface:
|     - Implemented a first set function in MatlabInterface and a test function for
|       it in SGInterface
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/PythonInterface.cpp
| M	src/interface/RInterface.cpp
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 77d17d8d10bff191ad84ca6459bd50111fffc75f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Feb 26 14:50:20 2008 +0000
| 
|     interface:
|     - switched get functions to call by reference
|     - implemented get functions in MatlabInterface (dunno if it works, though)
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit b063e7c303a1fcbd9ade3e7c872065b0d4a07efc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 26 10:36:58 2008 +0000
| 
|     - Implement python interface
|     - Now always throw shogun exceptions on SG_ERROR. These exceptions are catched if
|     thrown by the global interface handle(), catch for octave and R, python for
|     now. We might want to do the same with matlab etc.
| 
| M	src/gui/Python.cpp
| M	src/interface/OctaveInterface.cpp
| A	src/interface/PythonInterface.cpp
| A	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/lib/io.cpp
|  
* commit 62422b6d38fd111c41cb0c9961d4c16986ca808a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 26 08:43:41 2008 +0000
| 
|     add basic R interface functionality (currently breaks everything except send_command), switch R interface to use .External method
|     
|     	to test, use:
|     
|     ./configure --interface=R
|     make
|     
|     R
|     
|     dyn.load('sg.so')
|     sg <- function(...) .External("sg", ...)
|     sg('send_command','help')
| 
| M	src/gui/R.cpp
| A	src/interface/RInterface.cpp
| A	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
|  
* commit 7d2ffa0e9d665c508204cb0d0c35b56dd1f4eb1a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 26 07:03:48 2008 +0000
| 
|     - remove get_int_from_string from all interfaces and do this directly in SGInterface (using get_string)
|     - increment arg_counter on retrieval of values in matlab interface
|     - add octave interface functions:
|     	NOTE THAT THIS FOR NOW BREAKS THE WHOLE OCTAVE INTERFACE
| 
| M	src/gui/Octave.cpp
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| A	src/interface/OctaveInterface.cpp
| A	src/interface/OctaveInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit f913b2119c8ee1daa38c3327b6eaae9d4910bfea
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 25 17:55:25 2008 +0000
| 
|     more interface functions to deal with int/float/ etc
| 
| M	src/interface/MatlabInterface.cpp
|  
* commit f1faec9b74c67865c4660ce5fca8f760018c5e61
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 25 17:30:32 2008 +0000
| 
|     - generic interface extended
|     - minimal matlab interface based on generic interface, with fall back on old guiinterface
| 
| M	src/gui/Matlab.cpp
| A	src/interface/MatlabInterface.cpp
| A	src/interface/MatlabInterface.h
| A	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 23a9411f832b49c5ba90145e170048e4ccb33b67
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 25 15:28:38 2008 +0000
| 
|     general interface
| 
| A	src/interface/SGInterface.h
|  
* commit 695bdad7213af12032eda00f29eac5bcc11b2eee
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 25 15:26:54 2008 +0000
| 
|     allow to increase number of dimensions in sparse features
| 
| M	src/features/SparseFeatures.h
|  
* commit 6cb9dc0060d3ff61ea4f4f11b4aacbc2c21e1043
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Feb 21 14:11:42 2008 +0000
| 
|     testsuite:
|     - Regenerated testdata to even ground for changes to testgenerator
| 
| M	testsuite/data/classifier/SVMSGD_0017_1_1e-05_True.m
| M	testsuite/data/classifier/SVMSGD_023_1_1e-05_True.m
| M	testsuite/data/classifier/SVMSGD_15_1_1e-05_True.m
| M	testsuite/data/classifier/SVMSGD_30_16_00001_True.m
| M	testsuite/data/classifier/SVMSGD_30_1_00001_True.m
| M	testsuite/data/classifier/SVMSGD_30_1_1e-05_True.m
| M	testsuite/data/classifier/SubGradientSVM_05_0017_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05_False.m
| M	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| M	testsuite/data/distribution/HMM_4_60_6_3_0_1e-10_False_CUBE_1.m
| M	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| M	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| M	testsuite/data/kernel/AUC_15_Gaussian_10.m
| M	testsuite/data/kernel/Chi2_10_12.m
| M	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/Const_230.m
| M	testsuite/data/kernel/Custom_7.m
| M	testsuite/data/kernel/Diag_230.m
| M	testsuite/data/kernel/Distance_CanberraMetric_17.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| M	testsuite/data/kernel/GaussianShift_1_2_13.m
| M	testsuite/data/kernel/Gaussian_13.m
| M	testsuite/data/kernel/HistogramWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LinearWord.m
| M	testsuite/data/kernel/Linear_10.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| M	testsuite/data/kernel/PolyMatchWord_3_False.m
| M	testsuite/data/kernel/PolyMatchWord_3_True.m
| M	testsuite/data/kernel/Poly_4_6_0_8_3_FK_True_False_01_1_CUBE_1_False.m
| M	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_True_False_01_1_CUBE_1_False.m
| M	testsuite/data/kernel/Poly_False_3_False.m
| M	testsuite/data/kernel/Poly_False_3_True.m
| M	testsuite/data/kernel/Poly_True_3_False.m
| M	testsuite/data/kernel/Poly_True_3_True.m
| M	testsuite/data/kernel/SalzbergWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/Sigmoid_07_10_05.m
| M	testsuite/data/kernel/Sigmoid_13_10_11.m
| M	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| M	testsuite/data/kernel/SparseGaussian_13.m
| M	testsuite/data/kernel/SparseLinear_10.m
| M	testsuite/data/kernel/SparsePoly_3_10_True_True.m
| M	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| M	testsuite/data/kernel/WordMatch_3.m
|  
* commit f091d3e4d881b0eee3b44ac6371c85ca3916d1c3
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Feb 21 00:56:42 2008 +0000
| 
|     evaluation:
|     - Fixed balanced error in PerformanceMeasures
| 
| M	src/evaluation/PerformanceMeasures.cpp
|  
* commit ad26e5fd5e197bacd5c3089d2743610026b91c47
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 20 19:55:09 2008 +0000
| 
|     - fix stupid bug in sparse features & svmlight file loading
|     - fix memory leak in ocas
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/features/SparseFeatures.h
|  
* commit 4d7b92fdcd916e9bf39e264de740aa37b87334e9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Feb 20 19:51:30 2008 +0000
| 
|     evaluation:
|     - PerformanceMeasures improved: no alignment to ROC/PRC of accuracy/F-measure,
|       2 dimensional arrays with sorted outputs + measure instead (see get_all_*);
|       code-efficient usage of compute_confusion_matrix; no exception handling hack in
|       constructor
| 
| M	python-modular/examples/all_evaluation.py
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
| M	src/evaluation/PerformanceMeasures.i
|  
* commit d52802887dc3ef98f25071f4bcbf991e9878bb16
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 20 17:38:58 2008 +0000
| 
|     add example on how to read svm light format
|     fix crasher when writing and labels are None
| 
| A	python-modular/examples/read_svmlight_format.py
| M	src/features/SparseFeatures.h
|  
* commit fc87e5fc2d1a6bff828fa5b54a26dcbc27eaad2c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 19 18:30:01 2008 +0000
| 
|     really fix building...
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.h
|  
* commit 5b5b381609cfc7e69a11f8797328cfec500f5727
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 19 18:17:12 2008 +0000
| 
|     compile & style fixes for dynprog & matlab
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.h
|  
* commit ff47ab85e5ae378cd90185574c5c620feda2099a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 19 18:08:42 2008 +0000
| 
|     reorder definition and add m prefix to member variable
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit c14f0257920cab75991ee76626d072e74ce1b9b3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 19 18:05:03 2008 +0000
| 
|     - remove svmlight tests when svmlight is disabled
|     - prepare for 0.5.1
|     - replace ShogunException by SG_ERROR
|     - include sebastian in AUTHORS
| 
| M	Makefile
| M	R/Makefile
| M	R/sg/DESCRIPTION
| M	doc/doxygen/Doxyfile
| M	src/AUTHORS
| M	src/Makefile
| M	src/NEWS
| M	src/kernel/PyramidChi2.cpp
| M	src/kernel/PyramidChi2.h
|  
* commit ac72e98b262a30d3eb2ffa1305eea20c6a41d50b
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Feb 19 17:05:20 2008 +0000
| 
|     precompute content svm values; preliminary modifications; not functionalmake -j 5!
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit e3709072e6aeef38030382278882ca80da971816
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 19 16:43:36 2008 +0000
| 
|     - fix warning in pr_loqo
|     - make configure work with newer atlas/blas/lapack
|     - several performance measure fixes
| 
| M	doc/doxygen/Doxyfile
| M	python-modular/examples/all_evaluation.py
| M	src/classifier/svm/pr_loqo.cpp
| M	src/configure
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
|  
* commit 0e0292e8ad0ab1d46f95fdb1e0f403ee112caf1d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 18 19:18:01 2008 +0000
| 
|     add missing 1,1 for fp,tp roc matlab example
| 
| M	matlab/examples/tools/calcroc.m
|  
* commit 74c0cf12f483de580ab6350d4353fccb2e5c7f84
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Feb 18 19:01:54 2008 +0000
| 
|     evaluation:
|     - Updated swig-related documation
| 
| M	src/evaluation/Evaluation.i
| M	src/evaluation/PerformanceMeasures.i
|  
* commit 5765deec3bed8cb891067df87dfbd7ac77c48a82
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Feb 18 18:40:12 2008 +0000
| 
|     evaluation:
|     - Added get_error0() to PerformanceMeasures
|     - Added a few more explicit typecasts to DREAL for various calculations
| 
| M	doc/doxygen/Doxyfile
| M	python-modular/examples/all_evaluation.py
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
|  
* commit 95f7696842ea3b359d77c9c2b9e87521bd86321a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Feb 18 15:43:35 2008 +0000
| 
|     documentation:
|     - Improved doxy2swig when handling documented exceptions
| 
| M	src/.doxy2swig.py
|  
* commit 9febffbedec06f8e999cf0d4a5a3ed7df4856a99
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Feb 18 14:24:19 2008 +0000
| 
|     evaluation:
|     - Various cleanups and docstring updates in PerformanceMeasures
| 
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
|  
* commit c2ed442c07c7eef17bf7fcc6e4cc64a5ccc616ff
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 17 18:38:10 2008 +0000
| 
|     fix documentation when writing features in svm light format..
| 
| M	src/features/SparseFeatures.h
|  
* commit 5878b7343dc2b2be2fa2632def12fc0841bfefe9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 17 18:33:59 2008 +0000
| 
|     implement efficient (and hacky) reading of svm light format (> twice as fast as
|     svmperf2.5) and fix minor warning in perfmeasures
| 
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/features/SparseFeatures.h
|  
* commit 0c443166a320a28ceaa5d001f0f9d897eece79a0
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Feb 16 12:14:13 2008 +0000
| 
|     evaluation:
|     - Added DET to PerformanceMeasures
| 
| M	python-modular/examples/all_evaluation.py
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
|  
* commit e2a02d92fb75c897c3a8fa7f18a748fcd8d3cc0e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 15 21:32:43 2008 +0000
| 
|     cleanups
| 
| M	src/kernel/PyramidChi2.cpp
| M	src/kernel/PyramidChi2.h
|  
* commit 54489250dbceb59c8878ac9b32c2b0ee54ce1f43
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Feb 15 16:57:28 2008 +0000
| 
|     evaluation:
|     - Added CC, WRacc and balance to PerformanceMeasures
| 
| M	python-modular/examples/all_evaluation.py
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
|  
* commit c464fe3448e65c31f01fc0aae69018ac2ec04827
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Feb 15 13:38:35 2008 +0000
| 
|     evaluation:
|     - Added PRC + F-measure to PerformanceMeasures
| 
| M	doc/doxygen/Doxyfile
| M	python-modular/examples/all_evaluation.py
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
|  
* commit d490a97084bfeb05e59ed13e0b330f0520e8b25f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 15 08:16:03 2008 +0000
| 
|     ignore error when trying to version Doxyfile
| 
| M	src/Makefile
|  
* commit 6d2ae4b4854abbed1ac409223980b2a53502dde4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Feb 13 14:29:10 2008 +0000
| 
|     evaluation:
|     - Added auROC, aoROC and accuracy + error aligned to ROC to
|       PerformanceMeasures
|     - Updated example accordingly
| 
| M	python-modular/examples/all_evaluation.py
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
| M	src/evaluation/PerformanceMeasures.i
|  
* commit 9eb6b6f23fdf54d46e006dcd8266735fff4237f5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 13 13:22:41 2008 +0000
| 
|     add favicon to webpage
| 
| M	doc/doxygen/Doxyfile
|  
* commit 0b79e0e0b792d25cf9f76ac9d5fa8903afa51416
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Tue Feb 12 15:23:11 2008 +0000
| 
|     1)added EKernel_Type K_PYRAMIDCHI2 in common.h
|     2) added PyramidChi2.{h,cpp} as a pyramid kernel over Chi2 Kernels in a version which is adapted to shogun
| 
| A	src/kernel/PyramidChi2.cpp
| A	src/kernel/PyramidChi2.h
| A	src/kernel/PyramidChi2.i
| M	src/lib/common.h
|  
* commit 17852bacb98f2d4f6d6dd64dfc3ad15e0c454ce2
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Feb 10 18:25:04 2008 +0000
| 
|     evaluation:
|     - Fixed example for ROC on SVMOcas
| 
| M	python-modular/examples/all_evaluation.py
|  
* commit e0333909a23110befe06972dd22b0c16d2efb4be
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 8 21:31:52 2008 +0000
| 
|     enable building when doxygen is not installed
| 
| M	src/configure
|  
* commit a3cd66a247678e1bab82087cb96de5d87296bc9e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Feb 8 13:00:39 2008 +0000
| 
|     evaluation:
|     - Added example for peformance measures ROC, including plotting. Does not work
|       nicely, though.
| 
| M	doc/doxygen/Doxyfile
| M	python-modular/examples/all_classifier.py
| A	python-modular/examples/all_evaluation.py
| M	python-modular/examples/matplotlib/util.py
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
|  
* commit 3f8968b44c47d337021dd4b95d004840e75e3615
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Feb 6 21:35:23 2008 +0000
| 
|     evaluation:
|     - PerformanceMeasures: first stab at ROC
| 
| M	doc/doxygen/Doxyfile
| M	src/evaluation/Evaluation.i
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
| M	src/evaluation/PerformanceMeasures.i
|  
* commit 63038280925f0ec86043a52c30cf628a5c14ac42
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Feb 6 17:13:52 2008 +0000
| 
|     lib/Mathematics:
|     - CMath::sign is properly templated now.
| 
| M	src/lib/Mathematics.h
|  
* commit 9e4af54443d21ea63a9b852598cfc2352c90ee50
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 5 19:57:25 2008 +0000
| 
|     fix the > 0 thanks yaroslav
| 
| M	src/classifier/svm/MultiClassSVM.h
|  
* commit f2ba423d59df792eb5d89510174a5471b69590c9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Feb 5 19:15:48 2008 +0000
| 
|     documentation:
|     - Added 2 docstrings
|     lib/Mathematics:
|     - Fixed a compiler warning about 'comparison always true' when template type
|       is something unsigned.
| 
| M	src/classifier/svm/SVMSGD.h
| M	src/evaluation/PerformanceMeasures.h
| M	src/lib/Mathematics.h
|  
* commit 48429839b0ae7a956797e7b67fed0b247480ab4d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Feb 5 17:58:54 2008 +0000
| 
|     documentation:
|     - Added an option --quiet to doxy2swig and applied the option to the Makefile
|       to quieten doxy2swig's output during compilation when everything is ok.
| 
| M	src/.doxy2swig.py
| M	src/Makefile
|  
* commit adf973044c11b0fdcfe9398fe1c16ab04a747f9a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Feb 5 17:37:38 2008 +0000
| 
|     documentation:
|     - Added docstrings to items in lib/ which got somehow forgotten before the
|       release.
|     lib/Trie:
|     - Renamed one method mistakenly named set_weights_in_tree() to
|       get_weights_in_tree()
| 
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/lib/Cache.h
| M	src/lib/DynamicArray.h
| M	src/lib/Library.doxy
| M	src/lib/List.h
| M	src/lib/Mathematics.h
| M	src/lib/ShogunException.h
| M	src/lib/Signal.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.h
| M	src/lib/Trie.h
| M	src/lib/io.h
| M	src/lib/lapack.h
|  
* commit 548aca852ad3685cfa759d1d635b114a9dc9b42e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Feb 5 12:08:12 2008 +0000
| 
|     evaluation:
|     - Added new section 'evaluation' which includes a stub for its first member:
|       PerformanceMeasures
| 
| M	src/.generate_link_dependencies.py
| A	src/evaluation/Evaluation.doxy
| A	src/evaluation/Evaluation.i
| A	src/evaluation/PerformanceMeasures.cpp
| A	src/evaluation/PerformanceMeasures.h
| A	src/evaluation/PerformanceMeasures.i
|  
* commit 1df7fbe55e7f7e5fcb9066d71521f27bca772561
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 4 07:48:37 2008 +0000
| 
|     also allow for bias being disabled in ocas/sgd; add matlab test code, seems to
|     work, sgd and ocas deliver very similar objectives when run for many
|     iterations/low epsilon.
| 
| M	doc/doxygen/Doxyfile
| A	matlab/examples/svmsgd.m
| M	src/classifier/svm/SVMOcas.h
| M	src/classifier/svm/SVMSGD.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/common.h
|  
* commit 9f37297f3b6f76f9d042265b0ee488d6d03ff8e2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 4 06:24:07 2008 +0000
| 
|     add tests and examples for SGD
| 
| M	python-modular/examples/all_classifier.py
| M	python-modular/testcases/classifier.py
| M	src/classifier/SparseLinearClassifier.i
| M	src/classifier/svm/SVMSGD.cpp
| M	src/classifier/svm/SVMSGD.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Mathematics.h
| A	testsuite/data/classifier/SVMSGD_0017_1_1e-05_True.m
| A	testsuite/data/classifier/SVMSGD_023_1_1e-05_True.m
| A	testsuite/data/classifier/SVMSGD_15_1_1e-05_True.m
| A	testsuite/data/classifier/SVMSGD_30_16_00001_True.m
| A	testsuite/data/classifier/SVMSGD_30_1_00001_True.m
| A	testsuite/data/classifier/SVMSGD_30_1_1e-05_True.m
| M	testsuite/generator/classifier.py
| M	testsuite/generator/config.py
|  
* commit e72b7fb01eda8ceb6f30bcd60fd84b8628cb4506
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 3 22:22:37 2008 +0000
| 
|     add leon
| 
| M	src/CONTRIBUTIONS
|  
* commit 5271b4a7a797b4dd5d3a73bb3903c4423a46c69d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 3 12:26:23 2008 +0000
| 
|     add SGD and extend mathmatics/sparse features with a number of helpers
| 
| A	src/classifier/svm/SVMSGD.cpp
| A	src/classifier/svm/SVMSGD.h
| A	src/classifier/svm/SVMSGD.i
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/features/SparseFeatures.h
| M	src/lib/Mathematics.h
|  
* commit 808d3ad383cf5e1dd67385a7218f892c01d49849
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 3 10:55:28 2008 +0000
| 
|     set PYTHONPATH and PYTHON on make tests, for this test_all.sh was modified to
|     execute $PYTHON
| 
| M	python-modular/testcases/test_all.sh
| M	src/Makefile
|  
* commit 9f2074579d77a31de793b91d3ee39e43c579f9f5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 2 18:31:08 2008 +0000
| 
|     Preparing for new Release shogun_0.5.0
| 
| M	R/Makefile
| M	R/sg/DESCRIPTION
| M	doc/doxygen/Doxyfile
| M	src/ChangeLog
|  
* commit 795c74c778bd8bf104837fe1f14a280adaee93f3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 2 18:08:29 2008 +0000
| 
|     Apply patch from Yaroslav Halchenko to inherit show_progress
| 
| M	src/lib/io.cpp
| M	src/lib/io.h
|  
* commit 03d97d2abdf26ae146cc461209d7d8e7da51bc99
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 2 18:00:38 2008 +0000
| 
|     err, now that is black magic.
| 
| A	testsuite/data/kernel/Poly_4_6_0_8_3_FK_True_False_01_1_CUBE_1_False.m
| A	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_True_False_01_1_CUBE_1_False.m
| D	testsuite/data/kernel/Poly_6_0_3_FK_False_True_01_1_CUBE_1_False.m
| D	testsuite/data/kernel/Poly_6_0_3_TOP_False_True_01_1_CUBE_1_False.m
|  
* commit 77406565981c8449cf10d98a45768a45c73139de
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 2 17:54:36 2008 +0000
| 
|     four examples for HMM
| 
| M	testsuite/data/distribution/HMM_4_60_6_3_0_1e-10_False_CUBE_1.m
| M	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| M	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
|  
* commit dcef0d132f84b49d3be962e73ab87ad0d4fcfe4d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 2 17:53:56 2008 +0000
| 
|     use different test files for TOP/FK
| 
| M	doc/doxygen/Doxyfile
| M	testsuite/data/kernel/AUC_15_Gaussian_10.m
| M	testsuite/data/kernel/Chi2_10_12.m
| M	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/Const_230.m
| M	testsuite/data/kernel/Custom_7.m
| M	testsuite/data/kernel/Diag_230.m
| M	testsuite/data/kernel/Distance_CanberraMetric_17.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| M	testsuite/data/kernel/GaussianShift_1_2_13.m
| M	testsuite/data/kernel/Gaussian_13.m
| M	testsuite/data/kernel/HistogramWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LinearWord.m
| M	testsuite/data/kernel/Linear_10.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| M	testsuite/data/kernel/PolyMatchWord_3_False.m
| M	testsuite/data/kernel/PolyMatchWord_3_True.m
| M	testsuite/data/kernel/Poly_False_3_False.m
| M	testsuite/data/kernel/Poly_False_3_True.m
| M	testsuite/data/kernel/Poly_True_3_False.m
| M	testsuite/data/kernel/Poly_True_3_True.m
| M	testsuite/data/kernel/SalzbergWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/Sigmoid_07_10_05.m
| M	testsuite/data/kernel/Sigmoid_13_10_11.m
| M	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| M	testsuite/data/kernel/SparseGaussian_13.m
| M	testsuite/data/kernel/SparseLinear_10.m
| M	testsuite/data/kernel/SparsePoly_3_10_True_True.m
| M	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| M	testsuite/data/kernel/WordMatch_3.m
| M	testsuite/generator/dataop.py
| M	testsuite/generator/distribution.py
| M	testsuite/generator/kernel.py
|  
* commit 9a5eacc11b81cf9b074353edfd048f875d64cc1a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Feb 2 16:12:46 2008 +0000
| 
|     testsuite:
|     - Testcases for unavailable regressions (like SVR Light) or classifiers (like
|       SVM Light) are not generated/tested anymore
| 
| M	python-modular/testcases/classifier.py
| M	python-modular/testcases/regression.py
| M	testsuite/generator/classifier.py
| M	testsuite/generator/regression.py
|  
* commit 988a9322a7cfd2acbbdb68458b1fda77a64c8439
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 2 15:43:52 2008 +0000
| 
|     fix crasher when feature ``matrix'' is not existent, copy HMM model parameters in CHMM(CHMM* h)
| 
| M	src/distributions/hmm/HMM.cpp
| M	src/features/SimpleFeatures.h
|  
* commit 13c77caeb1cccc9f63cd2429f7e49773593dc226
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Feb 2 15:05:55 2008 +0000
| 
|     examples:
|     - Added examples for HMM and TOP/FKFeatures on PolyKernel
|     testsuite:
|     - Cosmetic fixes
| 
| M	python-modular/examples/all_distribution.py
| M	python-modular/examples/all_kernels.py
| M	python-modular/testcases/distribution.py
| A	testsuite/data/distribution/HMM_4_60_6_3_0_1e-10_False_CUBE_1.m
| D	testsuite/data/distribution/HMM_60_6_3_0_4_1e-10_False_CUBE_1.m
| M	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| M	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| M	testsuite/generator/distribution.py
|  
* commit 3dc4667cd16b493c73ec0ec384c0426da903aae9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Feb 2 14:08:49 2008 +0000
| 
|     testsuite:
|     - Replaced kernel Linear by Poly which delivers better normalization and
|       lesser problems with precision of floats (to be addressed later)
| 
| M	python-modular/testcases/kernel.py
| D	testsuite/data/kernel/Linear_10_6_01_0_CUBE_3_FK_1_False.m
| D	testsuite/data/kernel/Linear_10_6_01_0_CUBE_3_TOP_1_False.m
| A	testsuite/data/kernel/Poly_6_0_3_FK_False_True_01_1_CUBE_1_False.m
| A	testsuite/data/kernel/Poly_6_0_3_TOP_False_True_01_1_CUBE_1_False.m
| M	testsuite/generator/kernel.py
|  
* commit 4bc25a6902a25cc6a618e1de031a161b203e2834
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 2 12:29:02 2008 +0000
| 
|     built shogun for all interfaces, fixed minor warning for octave
| 
| M	src/gui/Octave.cpp
|  
* commit a192b43b30bd5cf9da812897445706b9d608a3de
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Feb 2 11:05:38 2008 +0000
| 
|     testsuite:
|     - Made accuracy of SVRs dependent on epsilon (like SVM a few commits before)
| 
| M	doc/doxygen/Doxyfile
| M	python-modular/testcases/regression.py
| M	testsuite/data/regression/LibSVR_0017_1_15_1e-05_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_023_1_15_1e-05_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_15_1_15_1e-05_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_30_16_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_30_1_15_1e-05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_0017_1_15_1e-05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_023_1_15_1e-05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_15_1_15_1e-05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_30_1_15_1e-05_Gaussian_001.m
| M	testsuite/generator/regression.py
|  
* commit 2a9a18fdb38a524df63b622d3c947633b35391c7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 21:53:21 2008 +0000
| 
|     add prior line search to test case runner: there must be still a bug in this as
|     re-running the generator always produces the same output
| 
| M	python-modular/testcases/kernel.py
|  
* commit 1c7dedfdbc2af62a2eda9836e07c3aefc2833a68
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 21:49:14 2008 +0000
| 
|     for FK do prior estimation on training data and reuse prior for testing
| 
| M	testsuite/data/kernel/Linear_10_6_01_0_CUBE_3_FK_1_False.m
| M	testsuite/data/kernel/Linear_10_6_01_0_CUBE_3_TOP_1_False.m
| M	testsuite/generator/kernel.py
|  
* commit d2befbce88d717057f1b10ef1b93c88bc33d43c5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 21:47:59 2008 +0000
| 
|     - INCREF HMM models when inserted into TOP/FK Features.
|     - limit linesearch for prior to 1e-6 ... 1-1e-6
|     - Fix warning in dynamic array
|     - random initialization of random number generator
| 
| M	src/features/FKFeatures.cpp
| M	src/features/TOPFeatures.cpp
| M	src/lib/DynamicArray.h
| M	src/lib/Mathematics.h
|  
* commit 11357e228ca03e4f6651b1822c2a0d89c94e4081
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 21:00:17 2008 +0000
| 
|     fix tests for HMM (reduce accuracy to 1e-6)
| 
| M	testsuite/data/distribution/HMM_60_6_3_0_4_1e-10_False_CUBE_1.m
| M	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| M	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| M	testsuite/generator/config.py
|  
* commit a15d005daf8103563d8fbd7252e4434cea1a5210
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 20:56:04 2008 +0000
| 
|     regenerating examples fixes clustering tests
| 
| M	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
|  
* commit d80704a02e9f033d106a4bd5f829cbcd846672b0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 20:42:20 2008 +0000
| 
|     hopefully fix HMM derivative enumeration and automagically fill in version number in Doxyfile
| 
| M	src/Makefile
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/lib/Mathematics.h
|  
* commit baf2d6d4bccea8b43a47a9e7621d99812ad48a8f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 19:11:57 2008 +0000
| 
|     fix missing random number generator initialization for cube
| 
| M	testsuite/generator/dataop.py
|  
* commit caae941ff0904e57e1ccb46414426bd825ce76db
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Feb 1 15:16:38 2008 +0000
| 
|     testsuite:
|     - Implementd constant seeding for Shogun's random number generator for all
|       testcases and test generation, hence quite an update on the data files
| 
| M	python-modular/testcases/clustering.py
| M	python-modular/testcases/test_one.py
| M	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_023_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_15_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_1.m
| A	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_16.m
| D	testsuite/data/classifier/GPBTSVM_0017_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/GPBTSVM_0017_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/GPBTSVM_001_00001_Linear_30_15_1.m
| A	testsuite/data/classifier/GPBTSVM_001_1e-05_Linear_0017_15_1.m
| A	testsuite/data/classifier/GPBTSVM_001_1e-05_Linear_023_15_1.m
| A	testsuite/data/classifier/GPBTSVM_001_1e-05_Linear_15_15_1.m
| A	testsuite/data/classifier/GPBTSVM_001_1e-05_Linear_30_15_1.m
| D	testsuite/data/classifier/GPBTSVM_023_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/GPBTSVM_023_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/GPBTSVM_15_0001_00001_Gaussian_30_1.m
| A	testsuite/data/classifier/GPBTSVM_15_0001_00001_Gaussian_30_16.m
| A	testsuite/data/classifier/GPBTSVM_15_001_00001_Gaussian_30_1.m
| A	testsuite/data/classifier/GPBTSVM_15_001_1e-05_Gaussian_0017_1.m
| A	testsuite/data/classifier/GPBTSVM_15_001_1e-05_Gaussian_023_1.m
| A	testsuite/data/classifier/GPBTSVM_15_001_1e-05_Gaussian_15_1.m
| A	testsuite/data/classifier/GPBTSVM_15_001_1e-05_Gaussian_30_1.m
| D	testsuite/data/classifier/GPBTSVM_15_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/GPBTSVM_15_15_1_Linear_001_1e-05.m
| D	testsuite/data/classifier/GPBTSVM_30_15_16_Gaussian_0001_00001.m
| D	testsuite/data/classifier/GPBTSVM_30_15_16_Linear_0001_00001.m
| D	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_0001_00001.m
| D	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_00001.m
| D	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_0001_00001.m
| D	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_00001.m
| D	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/KNN_EuclidianDistance_1_3.m
| M	testsuite/data/classifier/LDA_1_01.m
| M	testsuite/data/classifier/LibLinear_0017_1_1e-05_True.m
| M	testsuite/data/classifier/LibLinear_023_1_1e-05_True.m
| M	testsuite/data/classifier/LibLinear_15_1_1e-05_True.m
| M	testsuite/data/classifier/LibLinear_30_16_00001_True.m
| M	testsuite/data/classifier/LibLinear_30_1_00001_True.m
| M	testsuite/data/classifier/LibLinear_30_1_1e-05_True.m
| M	testsuite/data/classifier/LibSVMMultiClass_0017_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_023_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_15_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_1e-05_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_0017_1_Gaussian_001_1e-05_15.m
| D	testsuite/data/classifier/LibSVMOneClass_023_1_Gaussian_001_1e-05_15.m
| A	testsuite/data/classifier/LibSVMOneClass_15_0001_00001_Gaussian_30_1.m
| A	testsuite/data/classifier/LibSVMOneClass_15_0001_00001_Gaussian_30_16.m
| A	testsuite/data/classifier/LibSVMOneClass_15_001_00001_Gaussian_30_1.m
| A	testsuite/data/classifier/LibSVMOneClass_15_001_1e-05_Gaussian_0017_1.m
| A	testsuite/data/classifier/LibSVMOneClass_15_001_1e-05_Gaussian_023_1.m
| A	testsuite/data/classifier/LibSVMOneClass_15_001_1e-05_Gaussian_15_1.m
| A	testsuite/data/classifier/LibSVMOneClass_15_001_1e-05_Gaussian_30_1.m
| D	testsuite/data/classifier/LibSVMOneClass_15_1_Gaussian_001_1e-05_15.m
| D	testsuite/data/classifier/LibSVMOneClass_30_16_Gaussian_0001_00001_15.m
| D	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_0001_00001_15.m
| D	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_00001_15.m
| D	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_1e-05_15.m
| D	testsuite/data/classifier/LibSVM_0017_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/LibSVM_023_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/LibSVM_15_0001_00001_Gaussian_30_1.m
| A	testsuite/data/classifier/LibSVM_15_0001_00001_Gaussian_30_16.m
| A	testsuite/data/classifier/LibSVM_15_001_00001_Gaussian_30_1.m
| A	testsuite/data/classifier/LibSVM_15_001_1e-05_Gaussian_0017_1.m
| A	testsuite/data/classifier/LibSVM_15_001_1e-05_Gaussian_023_1.m
| A	testsuite/data/classifier/LibSVM_15_001_1e-05_Gaussian_15_1.m
| A	testsuite/data/classifier/LibSVM_15_001_1e-05_Gaussian_30_1.m
| D	testsuite/data/classifier/LibSVM_15_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/LibSVM_30_15_16_Gaussian_0001_00001.m
| D	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_0001_00001.m
| D	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_00001.m
| D	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/MPDSVM_0017_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/MPDSVM_023_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/MPDSVM_15_0001_00001_Gaussian_30_1.m
| A	testsuite/data/classifier/MPDSVM_15_0001_00001_Gaussian_30_16.m
| A	testsuite/data/classifier/MPDSVM_15_001_00001_Gaussian_30_1.m
| A	testsuite/data/classifier/MPDSVM_15_001_1e-05_Gaussian_0017_1.m
| A	testsuite/data/classifier/MPDSVM_15_001_1e-05_Gaussian_023_1.m
| A	testsuite/data/classifier/MPDSVM_15_001_1e-05_Gaussian_15_1.m
| A	testsuite/data/classifier/MPDSVM_15_001_1e-05_Gaussian_30_1.m
| D	testsuite/data/classifier/MPDSVM_15_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/MPDSVM_30_15_16_Gaussian_0001_00001.m
| D	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_0001_00001.m
| D	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_00001.m
| D	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/Perceptron_1_01_1000.m
| A	testsuite/data/classifier/SVMLight_0001_00001_Linear_30_15_1.m
| A	testsuite/data/classifier/SVMLight_0001_00001_Linear_30_15_16.m
| D	testsuite/data/classifier/SVMLight_0017_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/SVMLight_0017_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/SVMLight_001_00001_Linear_30_15_1.m
| A	testsuite/data/classifier/SVMLight_001_1e-05_Linear_0017_15_1.m
| A	testsuite/data/classifier/SVMLight_001_1e-05_Linear_023_15_1.m
| A	testsuite/data/classifier/SVMLight_001_1e-05_Linear_15_15_1.m
| A	testsuite/data/classifier/SVMLight_001_1e-05_Linear_30_15_1.m
| D	testsuite/data/classifier/SVMLight_023_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/SVMLight_023_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/SVMLight_15_0001_00001_Gaussian_30_1.m
| A	testsuite/data/classifier/SVMLight_15_0001_00001_Gaussian_30_16.m
| A	testsuite/data/classifier/SVMLight_15_001_00001_Gaussian_30_1.m
| A	testsuite/data/classifier/SVMLight_15_001_1e-05_Gaussian_0017_1.m
| A	testsuite/data/classifier/SVMLight_15_001_1e-05_Gaussian_023_1.m
| A	testsuite/data/classifier/SVMLight_15_001_1e-05_Gaussian_15_1.m
| A	testsuite/data/classifier/SVMLight_15_001_1e-05_Gaussian_30_1.m
| D	testsuite/data/classifier/SVMLight_15_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/SVMLight_15_15_1_Linear_001_1e-05.m
| D	testsuite/data/classifier/SVMLight_30_15_16_Gaussian_0001_00001.m
| D	testsuite/data/classifier/SVMLight_30_15_16_Linear_0001_00001.m
| D	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_0001_00001.m
| D	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_00001.m
| D	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/SVMLight_30_15_1_Linear_0001_00001.m
| D	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_00001.m
| D	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLin_0017_1_1e-05_True.m
| M	testsuite/data/classifier/SVMLin_023_1_1e-05_True.m
| M	testsuite/data/classifier/SVMLin_15_1_1e-05_True.m
| M	testsuite/data/classifier/SVMLin_30_16_00001_True.m
| M	testsuite/data/classifier/SVMLin_30_1_00001_True.m
| M	testsuite/data/classifier/SVMLin_30_1_1e-05_True.m
| M	testsuite/data/classifier/SVMOcas_0017_1_1e-05_False.m
| M	testsuite/data/classifier/SVMOcas_023_1_1e-05_False.m
| M	testsuite/data/classifier/SVMOcas_15_1_1e-05_False.m
| M	testsuite/data/classifier/SVMOcas_30_16_00001_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_00001_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_0017_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_023_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05_False.m
| A	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| D	testsuite/data/clustering/Hierarchical_EuclidianDistance_3_42.m
| A	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| D	testsuite/data/clustering/KMeans_EuclidianDistance_3_42.m
| M	testsuite/data/distance/CanberraMetric.m
| M	testsuite/data/distance/CanberraWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/ChebyshewMetric.m
| M	testsuite/data/distance/EuclidianDistance.m
| M	testsuite/data/distance/GeodesicMetric.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_False_DNA_3.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_True_DNA_3.m
| M	testsuite/data/distance/JensenMetric.m
| M	testsuite/data/distance/ManhattanMetric.m
| M	testsuite/data/distance/ManhattanWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/MinkowskiMetric_13.m
| M	testsuite/data/distance/SparseEuclidianDistance.m
| M	testsuite/data/distribution/HMM_60_6_3_0_4_1e-10_False_CUBE_1.m
| M	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| M	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| A	testsuite/data/kernel/AUC_15_Gaussian_10.m
| D	testsuite/data/kernel/AUC_Gaussian_10_15.m
| M	testsuite/data/kernel/Chi2_10_12.m
| M	testsuite/data/kernel/Combined_3_10_60_LinearString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| M	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/Const_230.m
| M	testsuite/data/kernel/Custom_7.m
| M	testsuite/data/kernel/Diag_230.m
| M	testsuite/data/kernel/Distance_CanberraMetric_17.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| M	testsuite/data/kernel/GaussianShift_1_2_13.m
| M	testsuite/data/kernel/Gaussian_13.m
| M	testsuite/data/kernel/HistogramWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LinearWord.m
| M	testsuite/data/kernel/Linear_10.m
| A	testsuite/data/kernel/Linear_10_6_01_0_CUBE_3_FK_1_False.m
| A	testsuite/data/kernel/Linear_10_6_01_0_CUBE_3_TOP_1_False.m
| D	testsuite/data/kernel/Linear_10_6_1e-10_0_CUBE_3_FK_1_False.m
| D	testsuite/data/kernel/Linear_10_6_1e-10_0_CUBE_3_TOP_1_False.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| M	testsuite/data/kernel/PolyMatchWord_3_False.m
| M	testsuite/data/kernel/PolyMatchWord_3_True.m
| M	testsuite/data/kernel/Poly_False_3_False.m
| M	testsuite/data/kernel/Poly_False_3_True.m
| M	testsuite/data/kernel/Poly_True_3_False.m
| M	testsuite/data/kernel/Poly_True_3_True.m
| M	testsuite/data/kernel/SalzbergWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/Sigmoid_07_10_05.m
| M	testsuite/data/kernel/Sigmoid_13_10_11.m
| M	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| M	testsuite/data/kernel/SparseGaussian_13.m
| M	testsuite/data/kernel/SparseLinear_10.m
| M	testsuite/data/kernel/SparsePoly_3_10_True_True.m
| M	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| M	testsuite/data/kernel/WordMatch_3.m
| M	testsuite/data/preproc/LogPlusOne_Gaussian_12.m
| M	testsuite/data/preproc/NormOne_Gaussian_12.m
| M	testsuite/data/preproc/PruneVarSubMean_Gaussian_False_12.m
| M	testsuite/data/preproc/PruneVarSubMean_Gaussian_True_12.m
| M	testsuite/data/preproc/SortUlongString_2_CommUlongString_60_0_False_DNA_3_False.m
| M	testsuite/data/preproc/SortWordString_2_CommWordString_60_0_False_DNA_3_False.m
| M	testsuite/data/preproc/SortWord_LinearWord.m
| M	testsuite/data/regression/KRR_Gaussian_16_1e-05_15.m
| M	testsuite/data/regression/KRR_Gaussian_1_1e-05_15.m
| M	testsuite/data/regression/KRR_Gaussian_1_1e-06_15.m
| A	testsuite/data/regression/LibSVR_0017_1_15_1e-05_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_0017_Gaussian_001_1e-05_1_15.m
| A	testsuite/data/regression/LibSVR_023_1_15_1e-05_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_023_Gaussian_001_1e-05_1_15.m
| A	testsuite/data/regression/LibSVR_15_1_15_1e-05_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_15_Gaussian_001_1e-05_1_15.m
| A	testsuite/data/regression/LibSVR_30_16_15_00001_Gaussian_0001.m
| A	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_0001.m
| A	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_30_1_15_1e-05_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_30_Gaussian_0001_00001_16_15.m
| D	testsuite/data/regression/LibSVR_30_Gaussian_0001_00001_1_15.m
| D	testsuite/data/regression/LibSVR_30_Gaussian_001_00001_1_15.m
| D	testsuite/data/regression/LibSVR_30_Gaussian_001_1e-05_1_15.m
| A	testsuite/data/regression/SVRLight_0017_1_15_1e-05_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_0017_Gaussian_001_1e-05_1_15.m
| A	testsuite/data/regression/SVRLight_023_1_15_1e-05_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_023_Gaussian_001_1e-05_1_15.m
| A	testsuite/data/regression/SVRLight_15_1_15_1e-05_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_15_Gaussian_001_1e-05_1_15.m
| A	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_0001.m
| A	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_30_1_15_1e-05_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_30_Gaussian_0001_00001_1_15.m
| D	testsuite/data/regression/SVRLight_30_Gaussian_001_00001_1_15.m
| D	testsuite/data/regression/SVRLight_30_Gaussian_001_1e-05_1_15.m
| M	testsuite/generator/classifier.py
| M	testsuite/generator/clustering.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/distribution.py
| M	testsuite/generator/fileop.py
| M	testsuite/generator/kernel.py
| M	testsuite/generator/preproc.py
| M	testsuite/generator/regression.py
|  
* commit 7d308b7db43d1278e21a0b99d31b3a15785d36a9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Feb 1 14:33:18 2008 +0000
| 
|     distribution:
|     - Previous SG_UNREFing was too aggressive...
| 
| M	src/distributions/hmm/HMM.cpp
|  
* commit 773e6afc3346b3680ce9fa05500f790d693d279e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Feb 1 14:15:05 2008 +0000
| 
|     distribution:
|     - Hopefully fixed some issues with refcounting
| 
| M	src/distributions/hmm/HMM.cpp
|  
* commit 4567a997f216d1ed7799d1bb9f822c17dd2fe7b4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Feb 1 14:04:18 2008 +0000
| 
|     testsuite:
|     - Removed cruft from old testing system
|     - Renamed scripts to make their purpose more obvious
| 
| D	python-modular/testcases/run.sh
| D	python-modular/testcases/test.py
| A	python-modular/testcases/test_all.sh
| A	python-modular/testcases/test_one.py
| D	python-modular/testcases/test_references.py
|  
* commit eb866fe702912e0dcdfa942e8ee9f54502ba3612
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Feb 1 13:55:37 2008 +0000
| 
|     testsuite:
|     - This might be the right intermediary infrastructure to integrate
|       TOP/FKFeatures. Tests still fail, though.
| 
| M	python-modular/testcases/kernel.py
| A	testsuite/data/kernel/Chi2_10_12.m
| D	testsuite/data/kernel/Chi2_10_Real_12.m
| D	testsuite/data/kernel/CommUlongString_2_60_0_False_DNA_StringUlong_3_False.m
| A	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernel/CommWordString_2_60_0_False_DNA_StringWord_3_False.m
| A	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| A	testsuite/data/kernel/Const_230.m
| D	testsuite/data/kernel/Const_230_Real.m
| A	testsuite/data/kernel/Diag_230.m
| D	testsuite/data/kernel/Diag_230_Real.m
| A	testsuite/data/kernel/Distance_CanberraMetric_17.m
| D	testsuite/data/kernel/Distance_CanberraMetric_Real_17.m
| A	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| D	testsuite/data/kernel/FixedDegreeString_60_3_DNA_StringChar.m
| A	testsuite/data/kernel/GaussianShift_1_2_13.m
| D	testsuite/data/kernel/GaussianShift_1_2_Real_13.m
| A	testsuite/data/kernel/Gaussian_13.m
| D	testsuite/data/kernel/Gaussian_Real_13.m
| A	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| D	testsuite/data/kernel/LinearByte_60_RAWBYTE_Byte.m
| A	testsuite/data/kernel/LinearString_60_DNA.m
| D	testsuite/data/kernel/LinearString_60_DNA_StringChar.m
| A	testsuite/data/kernel/LinearWord.m
| D	testsuite/data/kernel/LinearWord_Word.m
| A	testsuite/data/kernel/Linear_10.m
| A	testsuite/data/kernel/Linear_10_6_1e-10_0_CUBE_3_FK_1_False.m
| A	testsuite/data/kernel/Linear_10_6_1e-10_0_CUBE_3_TOP_1_False.m
| D	testsuite/data/kernel/Linear_10_FK.m
| D	testsuite/data/kernel/Linear_10_Real.m
| D	testsuite/data/kernel/Linear_10_TOP.m
| A	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| D	testsuite/data/kernel/LocalAlignmentString_60_DNA_StringChar.m
| A	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| D	testsuite/data/kernel/PolyMatchString_60_3_False_DNA_StringChar.m
| A	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| D	testsuite/data/kernel/PolyMatchString_60_3_True_DNA_StringChar.m
| A	testsuite/data/kernel/PolyMatchWord_3_False.m
| D	testsuite/data/kernel/PolyMatchWord_3_False_Word.m
| A	testsuite/data/kernel/PolyMatchWord_3_True.m
| D	testsuite/data/kernel/PolyMatchWord_3_True_Word.m
| A	testsuite/data/kernel/Poly_False_3_False.m
| D	testsuite/data/kernel/Poly_False_3_False_Real.m
| A	testsuite/data/kernel/Poly_False_3_True.m
| D	testsuite/data/kernel/Poly_False_3_True_Real.m
| A	testsuite/data/kernel/Poly_True_3_False.m
| D	testsuite/data/kernel/Poly_True_3_False_Real.m
| A	testsuite/data/kernel/Poly_True_3_True.m
| D	testsuite/data/kernel/Poly_True_3_True_Real.m
| A	testsuite/data/kernel/Sigmoid_07_10_05.m
| D	testsuite/data/kernel/Sigmoid_07_10_05_Real.m
| A	testsuite/data/kernel/Sigmoid_13_10_11.m
| D	testsuite/data/kernel/Sigmoid_13_10_11_Real.m
| A	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| D	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5_StringChar.m
| A	testsuite/data/kernel/SparseGaussian_13.m
| D	testsuite/data/kernel/SparseGaussian_SparseReal_13.m
| A	testsuite/data/kernel/SparseLinear_10.m
| D	testsuite/data/kernel/SparseLinear_10_SparseReal.m
| D	testsuite/data/kernel/SparsePoly_3_10_True_SparseReal_True.m
| A	testsuite/data/kernel/SparsePoly_3_10_True_True.m
| D	testsuite/data/kernel/WeightedCommWordString_2_60_0_False_DNA_StringWord_3_False.m
| A	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| A	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| D	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA_StringChar.m
| A	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| D	testsuite/data/kernel/WeightedDegreeString_60_20_DNA_StringChar.m
| A	testsuite/data/kernel/WordMatch_3.m
| D	testsuite/data/kernel/WordMatch_3_Word.m
| M	testsuite/generator/kernel.py
|  
* commit 9a72e60d064d37651e40792b18fa2397472e2c03
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Feb 1 11:50:36 2008 +0000
| 
|     testsuite:
|     - accuracy for SVMs now depends on epsilon. the way of doing this does not fit
|       neatly into the testsuite configuration system, though. needs to be
|       reworked.
| 
| M	python-modular/testcases/classifier.py
| M	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_023_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_15_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_15_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_16_Linear_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/LibLinear_0017_1_1e-05_True.m
| M	testsuite/data/classifier/LibLinear_023_1_1e-05_True.m
| M	testsuite/data/classifier/LibLinear_15_1_1e-05_True.m
| M	testsuite/data/classifier/LibLinear_30_16_00001_True.m
| M	testsuite/data/classifier/LibLinear_30_1_00001_True.m
| M	testsuite/data/classifier/LibLinear_30_1_1e-05_True.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_30_16_Gaussian_0001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_0001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_00001_15.m
| M	testsuite/data/classifier/LibSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_0017_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_023_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_15_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_16_Linear_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLin_0017_1_1e-05_True.m
| M	testsuite/data/classifier/SVMLin_023_1_1e-05_True.m
| M	testsuite/data/classifier/SVMLin_15_1_1e-05_True.m
| M	testsuite/data/classifier/SVMLin_30_16_00001_True.m
| M	testsuite/data/classifier/SVMLin_30_1_00001_True.m
| M	testsuite/data/classifier/SVMLin_30_1_1e-05_True.m
| M	testsuite/data/classifier/SVMOcas_0017_1_1e-05_False.m
| M	testsuite/data/classifier/SVMOcas_023_1_1e-05_False.m
| M	testsuite/data/classifier/SVMOcas_15_1_1e-05_False.m
| M	testsuite/data/classifier/SVMOcas_30_16_00001_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_00001_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_0017_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_023_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05_False.m
| M	testsuite/generator/classifier.py
|  
* commit 47933b905fa4b14b0b7d08afc9a4fbe0ce9cff40
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 09:59:42 2008 +0000
| 
|     add assertions in FKFeatures too and minor docu fix for TOP Features
| 
| M	src/features/FKFeatures.cpp
| M	src/features/TOPFeatures.h
|  
* commit c06fcb4b9cc7a532bed1ecc08309f8d1319936f4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 09:16:13 2008 +0000
| 
|     use some more fancy verbatim formatting
| 
| M	src/base/Documentation.mainpage
|  
* commit 6349f4446d2f82280ef4ed3613697198e71ab201
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 09:15:51 2008 +0000
| 
|     disable (confusing!) collaboration graphs
| 
| M	doc/doxygen/Doxyfile
|  
* commit 777b7de1fee356a7fcfd632122893f16e363621f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 08:49:02 2008 +0000
| 
|     update contributions, and add some user documentation
| 
| M	src/CONTRIBUTIONS
| A	src/base/Documentation.mainpage
|  
* commit 33cf300b388ecdc60f06d4399938c5244a0af31f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 08:48:37 2008 +0000
| 
|     include some images, don't generate a latex/pdf documentation anymore
| 
| M	doc/doxygen/Doxyfile
| A	doc/doxygen/MatlabDemo.png
| A	doc/doxygen/OctaveDemo.png
| A	doc/doxygen/PythonDemo.png
| A	doc/doxygen/RDemo.png
| A	doc/doxygen/shogun_logo.png
|  
* commit 84213e7b1642ea172ed825c12f1626cbff777c96
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 07:16:02 2008 +0000
| 
|     add a make doc target
| 
| M	src/Makefile
|  
* commit ac0a1d4e40e327599b26fdcac0fbea692d2c3915
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 07:15:46 2008 +0000
| 
|     doxygen documentation now does not inline the source code and ignores swig and
|     gui/guilib when generating docu. also add a shogun footer linking to HP
| 
| M	doc/doxygen/Doxyfile
| A	doc/doxygen/shogun_footer.html
|  
* commit f6b5122a9204f53d8a14dc008fa7dea8498155d2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 31 20:07:04 2008 +0000
| 
|     argh, really fix warnings (and fix cleverly introduced build errors)
| 
| M	src/features/TOPFeatures.cpp
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/SparsePolyKernel.cpp
|  
* commit e9ad063cd5e1bee793ca3db02207db7a1d8794d2
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jan 31 19:54:28 2008 +0000
| 
|     testsuite:
|     - Added testcase generation for TOP/FKFeatures in kernel Linear. This reverts
|       the previous assumption that each kernel can only work on one specific
|       feature type and hence the testsuite has to be reworked in that regard.
| 
| M	python-modular/testcases/kernel.py
| M	src/features/TOPFeatures.h
| D	testsuite/data/kernel/Chi2_10_12.m
| A	testsuite/data/kernel/Chi2_10_Real_12.m
| A	testsuite/data/kernel/CommUlongString_2_60_0_False_DNA_StringUlong_3_False.m
| D	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| A	testsuite/data/kernel/CommWordString_2_60_0_False_DNA_StringWord_3_False.m
| D	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernel/Const_230.m
| A	testsuite/data/kernel/Const_230_Real.m
| D	testsuite/data/kernel/Diag_230.m
| A	testsuite/data/kernel/Diag_230_Real.m
| D	testsuite/data/kernel/Distance_CanberraMetric_17.m
| A	testsuite/data/kernel/Distance_CanberraMetric_Real_17.m
| D	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| A	testsuite/data/kernel/FixedDegreeString_60_3_DNA_StringChar.m
| D	testsuite/data/kernel/GaussianShift_1_2_13.m
| A	testsuite/data/kernel/GaussianShift_1_2_Real_13.m
| D	testsuite/data/kernel/Gaussian_13.m
| A	testsuite/data/kernel/Gaussian_Real_13.m
| D	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| A	testsuite/data/kernel/LinearByte_60_RAWBYTE_Byte.m
| D	testsuite/data/kernel/LinearString_60_DNA.m
| A	testsuite/data/kernel/LinearString_60_DNA_StringChar.m
| D	testsuite/data/kernel/LinearWord.m
| A	testsuite/data/kernel/LinearWord_Word.m
| D	testsuite/data/kernel/Linear_10.m
| A	testsuite/data/kernel/Linear_10_FK.m
| A	testsuite/data/kernel/Linear_10_Real.m
| A	testsuite/data/kernel/Linear_10_TOP.m
| D	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| A	testsuite/data/kernel/LocalAlignmentString_60_DNA_StringChar.m
| D	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| A	testsuite/data/kernel/PolyMatchString_60_3_False_DNA_StringChar.m
| D	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| A	testsuite/data/kernel/PolyMatchString_60_3_True_DNA_StringChar.m
| D	testsuite/data/kernel/PolyMatchWord_3_False.m
| A	testsuite/data/kernel/PolyMatchWord_3_False_Word.m
| D	testsuite/data/kernel/PolyMatchWord_3_True.m
| A	testsuite/data/kernel/PolyMatchWord_3_True_Word.m
| D	testsuite/data/kernel/Poly_False_3_False.m
| A	testsuite/data/kernel/Poly_False_3_False_Real.m
| D	testsuite/data/kernel/Poly_False_3_True.m
| A	testsuite/data/kernel/Poly_False_3_True_Real.m
| D	testsuite/data/kernel/Poly_True_3_False.m
| A	testsuite/data/kernel/Poly_True_3_False_Real.m
| D	testsuite/data/kernel/Poly_True_3_True.m
| A	testsuite/data/kernel/Poly_True_3_True_Real.m
| D	testsuite/data/kernel/Sigmoid_07_10_05.m
| A	testsuite/data/kernel/Sigmoid_07_10_05_Real.m
| D	testsuite/data/kernel/Sigmoid_13_10_11.m
| A	testsuite/data/kernel/Sigmoid_13_10_11_Real.m
| D	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| A	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5_StringChar.m
| D	testsuite/data/kernel/SparseGaussian_13.m
| A	testsuite/data/kernel/SparseGaussian_SparseReal_13.m
| D	testsuite/data/kernel/SparseLinear_10.m
| A	testsuite/data/kernel/SparseLinear_10_SparseReal.m
| A	testsuite/data/kernel/SparsePoly_3_10_True_SparseReal_True.m
| D	testsuite/data/kernel/SparsePoly_3_10_True_True.m
| A	testsuite/data/kernel/WeightedCommWordString_2_60_0_False_DNA_StringWord_3_False.m
| D	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| A	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA_StringChar.m
| D	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| A	testsuite/data/kernel/WeightedDegreeString_60_20_DNA_StringChar.m
| D	testsuite/data/kernel/WordMatch_3.m
| A	testsuite/data/kernel/WordMatch_3_Word.m
| M	testsuite/generator/kernel.py
|  
* commit aee1078bb54967256cfd19c474d4302cc80d81d6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 31 19:06:24 2008 +0000
| 
|     fix many warnings and add assertions for TOP features
| 
| M	src/features/TOPFeatures.cpp
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit 941609bc7685ef432e164ffc8d91e0f45af5b4d7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 31 10:18:58 2008 +0000
| 
|     update NEWS, authors, liblinear to 1.22
| 
| M	src/.authors
| M	src/NEWS
| M	src/classifier/svm/SVM_linear.cpp
| M	src/classifier/svm/Tron.cpp
| M	src/features/TOPFeatures.h
|  
* commit 5e52b70ae24a0f0c1e2cb8ec8909e70db9acff22
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 31 06:01:03 2008 +0000
| 
|     remove ;
| 
| M	src/kernel/SalzbergWordKernel.cpp
|  
* commit 1cd53cf91d415f78714e9c7464c225430abd5024
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 30 16:11:01 2008 +0000
| 
|     documentation:
|     - Added docstrings to anything touched by doxygen in kernel/
| 
| M	src/kernel/AUCKernel.h
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.h
| M	src/kernel/DiagKernel.h
| M	src/kernel/DistanceKernel.h
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/GaussianKernel.h
| M	src/kernel/GaussianShiftKernel.h
| M	src/kernel/HistogramWordKernel.h
| M	src/kernel/Kernel.doxy
| M	src/kernel/Kernel.h
| M	src/kernel/KernelMachine.h
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearStringKernel.h
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalAlignmentStringKernel.h
| M	src/kernel/LocalityImprovedStringKernel.h
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchStringKernel.h
| M	src/kernel/PolyMatchWordKernel.h
| M	src/kernel/SalzbergWordKernel.h
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/kernel/WordMatchKernel.h
|  
* commit 5f6ca972115e60d342f78cdeb11349de8e9eeb6e
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Wed Jan 30 15:58:22 2008 +0000
| 
|     in Chi2Kernel::compute() checking for d!=0 before dividing by d, note: the case d==0 is common for using this kernel with sparse histograms
| 
| M	src/kernel/Chi2Kernel.cpp
|  
* commit 7dcaaf7ba87b2d53fded0bda4f4a2705cf274b66
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jan 29 14:29:16 2008 +0000
| 
|     documentation:
|     - Added docstrings to anything touched by doxygen in preproc/
| 
| M	src/preproc/LogPlusOne.h
| M	src/preproc/NormDerivativeLem3.h
| M	src/preproc/NormOne.h
| M	src/preproc/PCACut.h
| M	src/preproc/PreProc.doxy
| M	src/preproc/PreProc.h
| M	src/preproc/PruneVarSubMean.h
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SortUlongString.h
| M	src/preproc/SortWord.h
| M	src/preproc/SortWordString.h
| M	src/preproc/SparsePreProc.h
| M	src/preproc/StringPreProc.h
|  
* commit 8c067c49d9e87c81891e70971e33daf8dbbed4e4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jan 28 18:57:20 2008 +0000
| 
|     documentation:
|     - Added docstrings to anything touched by doxygen in regression/
| 
| M	src/regression/KRR.h
| M	src/regression/Regression.doxy
| M	src/regression/svr/LibSVR.h
| M	src/regression/svr/SVR_light.h
|  
* commit e96016f31cb011642d652085246ea3323b4d7680
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jan 28 18:22:41 2008 +0000
| 
|     documentation:
|     - Added docstrings to anything touched by doxygen in structure/
| 
| M	src/structure/DynProg.h
| M	src/structure/Plif.h
| M	src/structure/PlifArray.h
| M	src/structure/PlifBase.h
| M	src/structure/Structure.doxy
|  
* commit a469955cf770e56896e4832262766998b4a349d1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jan 28 14:30:16 2008 +0000
| 
|     documentation:
|     - Added docstrings to anything touched by doxygen in features/
| 
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.h
| M	src/features/CombinedFeatures.h
| M	src/features/FKFeatures.h
| M	src/features/Features.doxy
| M	src/features/Features.h
| M	src/features/Labels.h
| M	src/features/RealFeatures.h
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.h
| M	src/features/WordFeatures.h
|  
* commit 18c62f56bd960409c43d6b2ea54a64697ba59df3
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Jan 27 23:12:50 2008 +0000
| 
|     testsuite:
|     - call of test generator (./generate_testcases.py) now supports arguments to
|       run one or more modules (or none for all).
| 
| M	testsuite/generate_testdata.py
| M	testsuite/generator/__init__.py
|  
* commit 78cea2249774bb1960ffc4d8887c17118c39580c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Jan 27 19:40:22 2008 +0000
| 
|     documentation:
|     - Added docstrings to anything touched by doxygen in distribution/
| 
| M	src/distributions/Distribution.doxy
| M	src/distributions/Distribution.h
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/hmm/GHMM.h
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/LinearHMM.h
|  
* commit 80295961856ef72d9ab6800813a7c33c898d6ffa
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Jan 27 13:20:08 2008 +0000
| 
|     documentation:
|     - Added docstrings to anything touched by doxygen in distance/
| 
| M	src/distance/CanberraMetric.h
| M	src/distance/CanberraWordDistance.h
| M	src/distance/ChebyshewMetric.h
| M	src/distance/Distance.doxy
| M	src/distance/Distance.h
| M	src/distance/DistanceMachine.h
| M	src/distance/EuclidianDistance.h
| M	src/distance/GeodesicMetric.h
| M	src/distance/HammingWordDistance.h
| M	src/distance/JensenMetric.h
| M	src/distance/ManhattanMetric.h
| M	src/distance/ManhattanWordDistance.h
| M	src/distance/MinkowskiMetric.h
| M	src/distance/RealDistance.h
| M	src/distance/SimpleDistance.h
| M	src/distance/SparseDistance.h
| M	src/distance/SparseEuclidianDistance.h
| M	src/distance/StringDistance.h
|  
* commit b4c1c53bb481f365624ed3ae36a5402939f57fac
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Jan 27 11:22:38 2008 +0000
| 
|     documentation:
|      Added docstrings to anything touched by doxygen in clustering/
| 
| M	src/clustering/Clustering.doxy
| M	src/clustering/Hierarchical.h
| M	src/clustering/KMeans.h
|  
* commit 4f695ded231177780689d55192f2b1ca3187cd25
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 25 19:43:11 2008 +0000
| 
|     documentation
|     - Fix for doxy2swig's handling of the tag parametername when it has got a
|       child tag
| 
| M	src/.doxy2swig.py
|  
* commit 2c5eac53b8e8509cd438fddafca70c1895ca3188
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 25 19:32:54 2008 +0000
| 
|     documentation
|     - Added docstrings to anything touched by doxygen in classifer/
| 
| M	src/classifier/Classifier.doxy
| M	src/classifier/Classifier.h
| M	src/classifier/KNN.h
| M	src/classifier/KernelPerceptron.h
| M	src/classifier/LDA.h
| M	src/classifier/LinearClassifier.h
| M	src/classifier/Perceptron.h
| M	src/classifier/PluginEstimate.h
| M	src/classifier/SparseLinearClassifier.h
| M	src/classifier/svm/GMNPSVM.h
| M	src/classifier/svm/GNPPSVM.h
| M	src/classifier/svm/GPBTSVM.h
| M	src/classifier/svm/LibLinear.h
| M	src/classifier/svm/LibSVM.h
| M	src/classifier/svm/LibSVMMultiClass.h
| M	src/classifier/svm/LibSVMOneClass.h
| M	src/classifier/svm/MPDSVM.h
| M	src/classifier/svm/MultiClassSVM.h
| M	src/classifier/svm/Optimizer.h
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVMLin.h
| M	src/classifier/svm/SVMOcas.h
| M	src/classifier/svm/SVM_libsvm.h
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/SVM_linear.h
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/Tron.h
| M	src/classifier/svm/WDSVMOcas.h
| M	src/classifier/svm/gmnplib.h
| M	src/classifier/svm/gnpplib.h
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.h
| M	src/classifier/svm/libocas.h
| M	src/classifier/svm/qpbsvmlib.h
| M	src/classifier/svm/ssl.h
|  
* commit ed9e6b81d0ae3b870b9596cfc752628ceaf96dbd
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jan 24 18:41:08 2008 +0000
| 
|     documentation:
|     - Added many docstrings to quieten doxygen, more to come.
| 
| M	src/classifier/svm/SVM.h
| M	src/distributions/hmm/HMM.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/StringFeatures.h
| M	src/kernel/CombinedKernel.h
| M	src/kernel/Kernel.h
| M	src/lib/File.h
| M	src/lib/List.h
| M	src/structure/DynProg.h
|  
* commit 08cf3c3f05603a41b9c46b2991f13fe9bd84977d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 23 16:27:06 2008 +0000
| 
|     lib:
|     - Enabled proper handling of {en,dis}able_progress from within static
|       functions (hopefully)
| 
| M	src/lib/io.h
|  
* commit 4422d724fd34ba106a70ae41138e947753f04c9d
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Jan 23 15:38:43 2008 +0000
| 
|     fixed typo.
| 
| M	src/base/Version.h
|  
* commit e6393e18afbbb57af7f914189f0e312e0feacfbf
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 23 15:16:49 2008 +0000
| 
|     classifier:
|     - KNN now uses SG_PROGESS instead of SG_PRINT
| 
| M	src/classifier/KNN.cpp
|  
* commit 5f8503ceb1da72f63354aaff375faf961154d2c0
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 23 12:06:22 2008 +0000
| 
|     The big license switch to GPL v3 and copyright switch to 2008
| 
| M	doc/manual/introduction.txt
| M	doc/manual/license.txt
| M	src/LICENSE
| M	src/NEWS
| M	src/README
| M	src/base/Parallel.cpp
| M	src/base/Parallel.h
| M	src/base/SGObject.h
| M	src/base/Version.cpp
| M	src/base/Version.h
| M	src/classifier/Classifier.cpp
| M	src/classifier/Classifier.h
| M	src/classifier/KNN.cpp
| M	src/classifier/KNN.h
| M	src/classifier/KernelPerceptron.cpp
| M	src/classifier/KernelPerceptron.h
| M	src/classifier/LDA.cpp
| M	src/classifier/LDA.h
| M	src/classifier/LPBoost.cpp
| M	src/classifier/LPBoost.h
| M	src/classifier/LPM.cpp
| M	src/classifier/LPM.h
| M	src/classifier/LinearClassifier.cpp
| M	src/classifier/LinearClassifier.h
| M	src/classifier/Perceptron.cpp
| M	src/classifier/Perceptron.h
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/SparseLinearClassifier.cpp
| M	src/classifier/SparseLinearClassifier.h
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/SubGradientLPM.h
| M	src/classifier/svm/CPLEXSVM.cpp
| M	src/classifier/svm/CPLEXSVM.h
| M	src/classifier/svm/GMNPSVM.cpp
| M	src/classifier/svm/GMNPSVM.h
| M	src/classifier/svm/GNPPSVM.cpp
| M	src/classifier/svm/GNPPSVM.h
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/GPBTSVM.h
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/LibLinear.h
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVM.h
| M	src/classifier/svm/LibSVMMultiClass.cpp
| M	src/classifier/svm/LibSVMMultiClass.h
| M	src/classifier/svm/LibSVMOneClass.cpp
| M	src/classifier/svm/LibSVMOneClass.h
| M	src/classifier/svm/MPDSVM.cpp
| M	src/classifier/svm/MPDSVM.h
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/classifier/svm/MultiClassSVM.h
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMLin.h
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMOcas.h
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_libsvm.h
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/classifier/svm/gmnplib.cpp
| M	src/classifier/svm/gmnplib.h
| M	src/classifier/svm/gnpplib.cpp
| M	src/classifier/svm/gnpplib.h
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpdtsolve.h
| M	src/classifier/svm/gpm.cpp
| M	src/classifier/svm/gpm.h
| M	src/classifier/svm/libocas.cpp
| M	src/classifier/svm/libocas.h
| M	src/classifier/svm/pr_loqo.cpp
| M	src/classifier/svm/pr_loqo.h
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/classifier/svm/qpbsvmlib.h
| M	src/classifier/svm/qpssvmlib.cpp
| M	src/classifier/svm/qpssvmlib.h
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/Hierarchical.h
| M	src/clustering/KMeans.cpp
| M	src/clustering/KMeans.h
| M	src/configure
| M	src/distance/CanberraMetric.cpp
| M	src/distance/CanberraMetric.h
| M	src/distance/CanberraWordDistance.cpp
| M	src/distance/CanberraWordDistance.h
| M	src/distance/ChebyshewMetric.cpp
| M	src/distance/ChebyshewMetric.h
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/distance/DistanceMachine.cpp
| M	src/distance/DistanceMachine.h
| M	src/distance/EuclidianDistance.cpp
| M	src/distance/EuclidianDistance.h
| M	src/distance/GeodesicMetric.cpp
| M	src/distance/GeodesicMetric.h
| M	src/distance/HammingWordDistance.cpp
| M	src/distance/HammingWordDistance.h
| M	src/distance/JensenMetric.cpp
| M	src/distance/JensenMetric.h
| M	src/distance/ManhattanMetric.cpp
| M	src/distance/ManhattanMetric.h
| M	src/distance/ManhattanWordDistance.cpp
| M	src/distance/ManhattanWordDistance.h
| M	src/distance/MinkowskiMetric.cpp
| M	src/distance/MinkowskiMetric.h
| M	src/distance/RealDistance.h
| M	src/distance/SimpleDistance.h
| M	src/distance/SparseDistance.h
| M	src/distance/SparseEuclidianDistance.cpp
| M	src/distance/SparseEuclidianDistance.h
| M	src/distance/StringDistance.h
| M	src/distributions/Distribution.cpp
| M	src/distributions/Distribution.h
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/hmm/GHMM.cpp
| M	src/distributions/hmm/GHMM.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/distributions/hmm/LinearHMM.h
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.cpp
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.h
| M	src/features/CombinedFeatures.cpp
| M	src/features/CombinedFeatures.h
| M	src/features/FKFeatures.cpp
| M	src/features/FKFeatures.h
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/features/RealFeatures.cpp
| M	src/features/RealFeatures.h
| M	src/features/RealFileFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.cpp
| M	src/features/ShortFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/StringFeatures.cpp
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.cpp
| M	src/features/TOPFeatures.h
| M	src/features/WordFeatures.cpp
| M	src/features/WordFeatures.h
| M	src/gui/GUI.cpp
| M	src/gui/GUI.h
| M	src/gui/Matlab.cpp
| M	src/gui/Octave.cpp
| M	src/gui/Python.cpp
| M	src/gui/Python.h
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| M	src/gui/TextGUI.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUICommands.h
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIDistance.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKNN.cpp
| M	src/guilib/GUIKNN.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUILabels.cpp
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIOctave.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIPython.h
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
| M	src/guilib/GUITime.cpp
| M	src/guilib/GUITime.h
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/AUCKernel.h
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.cpp
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/DiagKernel.cpp
| M	src/kernel/DiagKernel.h
| M	src/kernel/DistanceKernel.cpp
| M	src/kernel/DistanceKernel.h
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/GaussianShiftKernel.cpp
| M	src/kernel/GaussianShiftKernel.h
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/HistogramWordKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/KernelMachine.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearStringKernel.cpp
| M	src/kernel/LinearStringKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalAlignmentStringKernel.cpp
| M	src/kernel/LocalAlignmentStringKernel.h
| M	src/kernel/LocalityImprovedStringKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.h
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchStringKernel.h
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/PolyMatchWordKernel.h
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.h
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/kernel/WordMatchKernel.cpp
| M	src/kernel/WordMatchKernel.h
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/lib/Cache.h
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
| M	src/lib/DynamicArray.h
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/List.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.cpp
| M	src/lib/Time.h
| M	src/lib/Trie.h
| M	src/lib/common.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/lapack.cpp
| M	src/lib/lapack.h
| M	src/preproc/LogPlusOne.cpp
| M	src/preproc/LogPlusOne.h
| M	src/preproc/NormDerivativeLem3.cpp
| M	src/preproc/NormDerivativeLem3.h
| M	src/preproc/NormOne.cpp
| M	src/preproc/NormOne.h
| M	src/preproc/PCACut.cpp
| M	src/preproc/PCACut.h
| M	src/preproc/PreProc.cpp
| M	src/preproc/PreProc.h
| M	src/preproc/PruneVarSubMean.cpp
| M	src/preproc/PruneVarSubMean.h
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SortUlongString.cpp
| M	src/preproc/SortUlongString.h
| M	src/preproc/SortWord.cpp
| M	src/preproc/SortWord.h
| M	src/preproc/SortWordString.cpp
| M	src/preproc/SortWordString.h
| M	src/preproc/SparsePreProc.h
| M	src/preproc/StringPreProc.h
| M	src/regression/KRR.cpp
| M	src/regression/KRR.h
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/LibSVR.h
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
| M	src/structure/PlifArray.cpp
| M	src/structure/PlifArray.h
| M	src/structure/PlifBase.h
|  
* commit 670550ac86c3ad33f13a6ed3e018fa48bbb66964
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 23 11:50:57 2008 +0000
| 
|     fix inverted meaning
| 
| M	src/lib/io.cpp
| M	src/lib/io.h
|  
* commit 8e4fd5320a823087180c304fa89e29eae1eff2ae
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 23 11:45:50 2008 +0000
| 
|     disable -> show_progress
| 
| M	src/lib/io.cpp
| M	src/lib/io.h
|  
* commit f87b814e5d36df0b6d18cb9103b48b5e295b449e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 23 07:31:42 2008 +0000
| 
|     option to disable progress and to get number of svms for multiclass svm
| 
| M	src/classifier/svm/MultiClassSVM.h
| M	src/lib/io.cpp
| M	src/lib/io.h
|  
* commit 5ae77d3d517229098a111fb026877ecb70419f53
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jan 22 15:43:36 2008 +0000
| 
|     documentation:
|     - Include a script to scrub the autogenerated python documentation, i.e.
|       replacing DREAL by float, in the make process
| 
| A	src/.scrub_docstrings.py
| M	src/Makefile
|  
* commit 9c57ccb443057fdf8fed05a115bec603634b1cad
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jan 21 14:46:21 2008 +0000
| 
|     documentation:
|     - Use swig feature "autodoc" "0" to prevent occurrence of types in function
|       arguments
|     - Use swig feature "autodoc" "docstring" to have correct doc for typemapped
|       functions
| 
| M	src/classifier/Classifier.i
| M	src/classifier/LinearClassifier.i
| M	src/classifier/SparseLinearClassifier.i
| M	src/classifier/svm/SVM.i
| M	src/clustering/Clustering.i
| M	src/clustering/Hierarchical.i
| M	src/clustering/KMeans.i
| M	src/distance/Distance.i
| M	src/distributions/Distribution.i
| M	src/distributions/histogram/Histogram.i
| M	src/distributions/hmm/LinearHMM.i
| M	src/features/Alphabet.i
| M	src/features/Features.i
| M	src/features/Labels.i
| M	src/features/RealFeatures.i
| M	src/features/ShortFeatures.i
| M	src/features/StringFeatures.i
| M	src/features/WordFeatures.i
| M	src/kernel/Kernel.i
| M	src/lib/Library.i
| M	src/preproc/PreProc.i
| M	src/regression/Regression.i
| M	src/structure/DynProg.i
|  
* commit 43b4a2e1e63ca284bf71ca3bc1c7edce7f3d968f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jan 21 11:42:54 2008 +0000
| 
|     documentation:
|     - Adjusted Makefile to use doxy2swig with option --no-function-definition
| 
| M	src/Makefile
|  
* commit cc0ab7422fb6d5958a57dfb3d7b574a5413f60d7
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jan 21 11:22:59 2008 +0000
| 
|     documentation:
|     - Bugfix for new option include_function_definition
| 
| M	src/.doxy2swig.py
|  
* commit 2a667605714f37c0e8159f00e6ff2127cff5c4b0
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jan 21 10:00:44 2008 +0000
| 
|     documentation:
|     - Updated doxy2swig.py from
|       http://www.aero.iitb.ac.in/~prabhu/software/code/python/
| 
| M	src/.doxy2swig.py
|  
* commit 4d90cf6c86df4684c1820c85c32333e71e0df58d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 18 15:57:16 2008 +0000
| 
|     testsuite:
|     - First stab at TOPFeatures, not working yet.
| 
| M	testsuite/generator/kernel.py
|  
* commit 1954ceb556693311fbc60af69e8d6aefa0adfe08
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jan 17 15:12:33 2008 +0000
| 
|     distribution/HMM:
|     - Added some (commented) print statements for debugging
|     - Got rid of compiler warning due to call of parent class' constructor at the
|       wrong place
| 
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
|  
* commit 0555c6f479ac561fe8e311ee22888d943cd989e8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 15 20:07:49 2008 +0000
| 
|     call constructor
| 
| M	src/distributions/hmm/HMM.cpp
|  
* commit b595cd9cae27ebd986ee8f7c063e7fa3b359eab4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jan 15 14:33:24 2008 +0000
| 
|     testsuite:
|     - Sorted namespace issues, python documentation should be clean now
| 
| M	testsuite/generator/__init__.py
| M	testsuite/generator/classifier.py
| M	testsuite/generator/clustering.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/distance.py
| M	testsuite/generator/distribution.py
| M	testsuite/generator/featop.py
| M	testsuite/generator/kernel.py
| M	testsuite/generator/preproc.py
| M	testsuite/generator/regression.py
|  
* commit 2262a0f011ab16b314be2d7a4bcb674644e2714e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jan 14 15:23:55 2008 +0000
| 
|     testsuite:
|     - Added docstrings to all functions
| 
| M	testsuite/generator/__init__.py
| M	testsuite/generator/classifier.py
| M	testsuite/generator/clustering.py
| M	testsuite/generator/config.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/distance.py
| M	testsuite/generator/distribution.py
| M	testsuite/generator/featop.py
| M	testsuite/generator/fileop.py
| M	testsuite/generator/kernel.py
| M	testsuite/generator/preproc.py
| M	testsuite/generator/regression.py
|  
* commit e560fc51031af616c8e09a4ba0faf1ace8787cfc
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Jan 13 00:51:09 2008 +0000
| 
|     changes for alt_splice mSplicer
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 9ddb1a5641d4dde921471e48cfe313a481b37575
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Jan 12 14:20:09 2008 +0000
| 
|     minor changes in argument processing
| 
| M	src/guilib/GUIMatlab.cpp
|  
* commit 6b8abfacfd87bb431e327a03a3d83c20139c230e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 12 11:38:10 2008 +0000
| 
|     fix valgrind delete[] delete free mismatches triggered by python-modular testsuite
| 
| M	src/classifier/svm/SVM.h
| M	src/distance/Distance.cpp
| M	src/kernel/Kernel.cpp
|  
* commit a50ebd15a72ced4f4c2a876a8011f27a25dd0225
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 11 15:02:28 2008 +0000
| 
|     kernel:
|     - Converted tries of WeightedDegreeStringKernel to use dynamic memory
|       allocation
|     - WeighteddegreeStringKernel::set_max_mismatch() calls ::init() when
|       appropriate
| 
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	testsuite/generator/__init__.py
|  
* commit 2e6b0c109a6624a4f3cdfc9b56a8233a3fd60044
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 11 12:44:54 2008 +0000
| 
|     distribution/testsuite:
|     - Some more tweaking of HMM, still unfinished
| 
| M	python-modular/testcases/distribution.py
| M	python-modular/testcases/test.py
| M	python-modular/testcases/util.py
| M	src/distributions/hmm/HMM.cpp
| D	testsuite/data/distribution/HMM_1e-10_False_3_60_0_6_CUBE_1.m
| A	testsuite/data/distribution/HMM_60_6_3_0_4_1e-10_False_CUBE_1.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/config.py
| M	testsuite/generator/distribution.py
|  
* commit 48bfb99d693642d55fc4a48ad44c0c666570e235
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jan 10 14:34:46 2008 +0000
| 
|     kernel:
|     - Fixed a little issue with memory created with new (now malloc) when being
|       free'd (from the outside)
| 
| M	src/kernel/Kernel.cpp
|  
* commit 446154f82d72770612481885dcb856f9399adb8e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jan 10 14:18:01 2008 +0000
| 
|     kernel:
|     - Fixed memory/NaN issue with in test matrices in
|       {Salzberg,Histogram}WordKernel
| 
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.cpp
| M	testsuite/data/kernel/HistogramWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/SalzbergWord_60_0_DNA_3_False.m
|  
* commit 4498eba4355ba1ce1d7968ecdd21c4f58f0a8d57
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 9 18:19:18 2008 +0000
| 
|     * fix crasher on clear sg :
|     
|     for some reason matlab newer shogun version reliably crashed on
|     <do things with sg> ; clear sg ; sg  ... fix the potentially stack overflow by
|     dynamically allocating memory for the random number generator.
|     
|     * fix warning in ocas
| 
| M	src/classifier/svm/libocas.cpp
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
|  
* commit 197e5377f3a1aa40bc8e9f157c2bca98d16b096c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 9 14:52:49 2008 +0000
| 
|     classifier/kernel:
|     - Modified {Salzberg, Histogram}Word to use StringFeatures<WORD> and bugfixed
|       them a little, so that Shogun does not crash anymore.
|     - Constructor of PluginEstimate now uses default values for pseudos (as taken
|       from Distribution's constructor)
|     - Both kernels spit out nans and wierd test kernel matrices. Apparently, they
|       need more fixing
|     testsuite/examples:
|     - Integrated {Salzberg, Histogram}Word
| 
| M	python-modular/examples/all_kernels.py
| M	python-modular/testcases/kernel.py
| M	src/classifier/PluginEstimate.h
| M	src/features/StringFeatures.h
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/HistogramWordKernel.h
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.h
| A	testsuite/data/kernel/HistogramWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| A	testsuite/data/kernel/SalzbergWord_60_0_DNA_3_False.m
| M	testsuite/generator/config.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/kernel.py
|  
* commit ab43a9c2d3c69f8962af3869524f07050a6b2b84
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jan 8 14:35:24 2008 +0000
| 
|     distribution:
|     - Some more bits for a better HMM, unfortunately still incomplete due to yet
|       another road block (see mailing-list).
| 
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	testsuite/generator/dataop.py
| M	testsuite/generator/distribution.py
|  
* commit 9ff24a63df85d52b8314a8c711a4804dc508373d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 8 14:32:04 2008 +0000
| 
|     - fix crash in figuring out alphabet
|     - allow order 8 for wdocas
| 
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/guilib/GUIMatlab.cpp
|  
* commit 3d9a3c17170c4bf8fb26ddadb856f9f2310575dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 8 13:28:54 2008 +0000
| 
|     fix compile error in python-modular interface
| 
| M	src/classifier/svm/WDSVMOcas.cpp
|  
* commit 929a17449021b13b753e5fbc8df2b9f8cd8293a5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 8 08:53:18 2008 +0000
| 
|     update of libocas, fixes bug in linesearch
| 
| M	src/classifier/svm/libocas.cpp
|  
* commit 6c76ec5e91058d1fad5543320d0cbf9c5af177d0
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jan 7 10:17:46 2008 +0000
| 
|     testsuite:
|     - Some preparations for implementing {Salzberg,Histogram}WordKernel
| 
| M	testsuite/generator/dataop.py
| M	testsuite/generator/kernel.py
|  
* commit 84086aa08bdd5a4758ca75e4f7e5d9114b56e4d4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 5 22:58:19 2008 +0000
| 
|     parallelize WDOcas
| 
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/classifier/svm/libocas.cpp
|  
* commit a20597411f13c75a3338295d55a2071b6e783651
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 5 16:57:47 2008 +0000
| 
|     fix rarely occuring bug in libocas (vf)
| 
| M	src/classifier/svm/libocas.cpp
|  
* commit 583f9e7f28a2196997ee883dc77067a605eb9785
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Jan 5 13:54:49 2008 +0000
| 
|     classifier:
|     - Silenced SubGradientSVM
| 
| M	src/classifier/svm/SubGradientSVM.cpp
|  
* commit 97103922eb15f23b16fd159e9dea0a02fcd5fe9d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 5 13:48:56 2008 +0000
| 
|     hopefully fix dependency building with gcc -MM -MT ...
| 
| M	src/Makefile
|  
* commit 864735d6064f2d3a3ccaee0efb9083e784219e1f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Jan 5 13:36:42 2008 +0000
| 
|     distribution/examples:
|     - Modified Distribution::get_log_likelihood to be wrappable by swig
|     - Added this method to the examples for Distribution
| 
| M	python-modular/examples/all_distribution.py
| M	src/distributions/Distribution.cpp
| M	src/distributions/Distribution.h
| M	src/distributions/Distribution.i
|  
* commit e5c3aef987e1f9dbcf6946193146dada42799a95
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Jan 5 12:14:09 2008 +0000
| 
|     testsuite:
|     - Forgot to add SortUlongString preproc to UlongStringFeatures as default in
|       testcases which lead to errors in testing, because the generator actually
|       had added the preprocs
| 
| M	python-modular/testcases/util.py
|  
* commit 63141f1f6396f6d9b62428fd0827ec6685995862
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 5 10:29:28 2008 +0000
| 
|     * fix warning in linear hmm (cast num_symbols to int)
|     * fix loading of strings when lines are longer than 1MB
|     * add progress bar for linecounting and loading
| 
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/features/StringFeatures.h
|  
* commit dec7a0aedda906d4389529862dacec54044d32b9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 4 23:40:52 2008 +0000
| 
|     add read_dna_file function to directly read in strings without having to transfer them from matlab or so
|     
|     example:
|     sg('set_features', 'TRAIN', 'dat.fa', 'DNABINFILE');
| 
| M	src/Makefile
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/configure
| M	src/features/Alphabet.cpp
| M	src/features/StringFeatures.h
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Mathematics.cpp
| M	src/lib/common.h
|  
* commit 1f532a9a0c52467010e245c8355c0737a7b8f032
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 4 16:31:45 2008 +0000
| 
|     distribution:
|     - LinearHMM: Renamed hist to transition_probs
|     - Histogram: Moved get/set_histogram into .cpp
|     
|     classifier/testsuite/examples:
|     - Adjusted to changes above
| 
| M	python-modular/examples/all_distribution.py
| M	python-modular/testcases/distribution.py
| M	src/classifier/PluginEstimate.h
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/distributions/hmm/LinearHMM.h
| M	src/distributions/hmm/LinearHMM.i
| M	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| M	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| M	testsuite/generator/distribution.py
|  
* commit 35ccae39c714cbefaabe640cc7cd09cba0a8bbec
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 4 12:23:40 2008 +0000
| 
|     testsuite:
|     - Jury-rigged random initialisation in clustering to produce constant values,
|       helped by yesterday's new init_random() in Mathematics
|     clustering:
|     - Fixed Hierarchical::get_merge_distance() and ::get_pairs() wrapped for swig
|       similarly to yesterday's fix of KMeans::get_radi() and ::get_centers()
| 
| M	python-modular/examples/all_clustering.py
| M	python-modular/testcases/clustering.py
| M	src/clustering/Hierarchical.h
| D	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| A	testsuite/data/clustering/Hierarchical_EuclidianDistance_3_42.m
| D	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| A	testsuite/data/clustering/KMeans_EuclidianDistance_3_42.m
| M	testsuite/generator/clustering.py
|  
* commit a8a5105021b58ad8f88e234d9e516c9bf5bddd4a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 3 18:16:57 2008 +0000
| 
|     several fixes and enhancements caused by todays kodeaffe-questioning
| 
| M	matlab/examples/hmm.m
| M	src/clustering/KMeans.h
| M	src/distributions/Distribution.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/lib/Cache.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
|  
* commit 7ada0ae93e9a4123d0275af7bf26f5d370bc5265
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 2 16:09:00 2008 +0000
| 
|     testsuite:
|     - featop.get_string_complex now adds preproc SortUlongString implicitely
|       where appropriate
| 
| M	python-modular/examples/all_kernels.py
| M	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/featop.py
| M	testsuite/generator/preproc.py
|  
* commit 550039106488665266b8f8280f1904156f4cd807
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 2 15:56:49 2008 +0000
| 
|     testsuite:
|     - Added support for arguments in preproc instantiation
| 
| M	python-modular/testcases/preproc.py
| M	python-modular/testcases/util.py
| D	testsuite/data/preproc/PruneVarSubMean_Gaussian_12.m
| A	testsuite/data/preproc/PruneVarSubMean_Gaussian_False_12.m
| A	testsuite/data/preproc/PruneVarSubMean_Gaussian_True_12.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/config.py
| M	testsuite/generator/featop.py
| M	testsuite/generator/fileop.py
| M	testsuite/generator/preproc.py
|  
* commit 760b7ae529f546cab005cdbaf5dd195a735b10f1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 2 14:39:56 2008 +0000
| 
|     preproc:
|     - Obliterated {Real,Short,Word}PreProc
| 
| M	src/features/RealFileFeatures.cpp
| M	src/preproc/LogPlusOne.cpp
| M	src/preproc/LogPlusOne.h
| M	src/preproc/NormDerivativeLem3.cpp
| M	src/preproc/NormDerivativeLem3.h
| M	src/preproc/NormOne.cpp
| M	src/preproc/NormOne.h
| M	src/preproc/PCACut.cpp
| M	src/preproc/PCACut.h
| M	src/preproc/PreProc.i
| M	src/preproc/PruneVarSubMean.cpp
| M	src/preproc/PruneVarSubMean.h
| D	src/preproc/RealPreProc.h
| D	src/preproc/RealPreProc.i
| D	src/preproc/ShortPreProc.cpp
| D	src/preproc/ShortPreProc.h
| D	src/preproc/ShortPreProc.i
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SortUlongString.h
| M	src/preproc/SortWord.cpp
| M	src/preproc/SortWord.h
| M	src/preproc/SortWordString.h
| M	src/preproc/StringPreProc.h
| D	src/preproc/WordPreProc.cpp
| D	src/preproc/WordPreProc.h
| D	src/preproc/WordPreProc.i
|  
* commit bc6da122bdcb233532cee55d5130a359a9c978b8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jan 1 12:24:05 2008 +0000
| 
|     testsuite/examples:
|     - Added preprocs
| 
| A	python-modular/examples/all_preproc.py
| A	python-modular/testcases/preproc.py
| M	python-modular/testcases/test.py
| M	python-modular/testcases/util.py
| A	testsuite/data/preproc/LogPlusOne_Gaussian_12.m
| A	testsuite/data/preproc/NormOne_Gaussian_12.m
| A	testsuite/data/preproc/PruneVarSubMean_Gaussian_12.m
| A	testsuite/data/preproc/SortUlongString_2_CommUlongString_60_0_False_DNA_3_False.m
| A	testsuite/data/preproc/SortWordString_2_CommWordString_60_0_False_DNA_3_False.m
| A	testsuite/data/preproc/SortWord_LinearWord.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/config.py
| M	testsuite/generator/featop.py
| M	testsuite/generator/fileop.py
| A	testsuite/generator/preproc.py
|  
* commit 910bedeaccbde17363433cfb8280a531d5fd0876
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Dec 30 22:59:37 2007 +0000
| 
|     fix error in header file (gcc 4.3 reports this as error multiple parameters named 'posweights_lhs')
| 
| M	src/kernel/WeightedDegreePositionStringKernel.h
|  
* commit 73f9dfb1f494b18d191cfedeadc437a45a9dca45
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Dec 29 13:38:03 2007 +0000
| 
|     kernel:
|     - Made a few little improvements in WeightedDegreeStringKernel wrt
|       set_max_mismatch()
| 
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
|  
* commit 35b2263c061a8659a036f7162eb269b86dd81ef6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Dec 27 16:09:34 2007 +0000
| 
|     distribution:
|     - kind of integrated HMM into testsuite; a few things unclear yet, hence no
|       updated examples.
| 
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| D	testsuite/data/distribution/HMM_10_1_60_2_DNA.m
| A	testsuite/data/distribution/HMM_1e-10_False_3_60_0_6_CUBE_1.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/config.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/distribution.py
| M	testsuite/generator/fileop.py
|  
* commit 37d84825f36b37895246cd6d94b2e912216055fd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 22 22:39:03 2007 +0000
| 
|     bugfix
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.cpp
|  
* commit 4ac9412cecd4d42cff59ec938730f7995eb002d4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 22 20:27:55 2007 +0000
| 
|     traverse data dimension wise, to reduce cache hits. speeds up output
|     computation by factor 3. however it requires data to be transposed(!!!)
|     
|     ...debugging
| 
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
|  
* commit 5994425aef3689e7767dfb43ca7583c2d1a3a9e2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 22 17:22:32 2007 +0000
| 
|     dyn alloc things
| 
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/lib/Mathematics.h
|  
* commit 8831baf1f61555bf794c4922012f2d21eab9f376
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 22 05:29:26 2007 +0000
| 
|     adding code to figure out why computing output to wd ocas is slow (95% is spend
|     in computing output) - as expected the random access to w is the cause. we need
|     to use the batch computation idea to minimize cache misses. still this
|     implementation is 2 times faster than svm light w/ linadd
| 
| M	src/classifier/svm/WDSVMOcas.cpp
|  
* commit 102627db6c7ee4bb0792ed65d268cbb2e8564c61
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Dec 21 15:03:48 2007 +0000
| 
|     kernel:
|     - Added some get/set functions to WeightedDegreeStringKernel to reestablish
|       functionality lost through changes in the constructors a few commits before
| 
| A	matlab/testcases/WeightedDegreeString.m
| M	matlab/testcases/test_kernels.m
| D	matlab/testcases/test_wd_kernel.m
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	testsuite/generator/__init__.py
|  
* commit c405fbf15381620e964adfdda8a870892473b53e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 21 11:04:20 2007 +0000
| 
|     fix timing, minor tuning
| 
| M	matlab/examples/test_ocas_normalization.m
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/libocas.cpp
|  
* commit 7fd723804438ace1ffb145be607a2c1bf1eb8455
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 21 10:14:00 2007 +0000
| 
| M	matlab/examples/test_wdocas.m
|  
* commit 9cabefa427debce13afa4fd7fa1621245f40788f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 21 10:04:53 2007 +0000
| 
|     output timing statistics
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
|  
* commit b90dc7b6eb4c077e13fd19d14fbdcdb50ee92c9d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 21 09:05:06 2007 +0000
| 
|     updated to new ocas
| 
| M	src/classifier/svm/libocas.cpp
| M	src/classifier/svm/libocas.h
|  
* commit 70f777f38b7109937eff55fc4aa37ef8c3fdb88e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 20 23:33:28 2007 +0000
| 
|     seems to work now - the meaning of epsilon is really completely different so
|     don't expect a solution even close to svmlight...
| 
| A	matlab/examples/test_ocas_normalization.m
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
|  
* commit 85f4a00cd83586992e4e568dc7b8f55c052fec42
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 20 17:55:23 2007 +0000
| 
|     - fix parts of WD kernel (broken since ABI change)
|     - debugging WDSVMOcas
| 
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
|  
* commit e2928e97da72cf648b528f668730e5a9d688cbe8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Dec 20 16:02:57 2007 +0000
| 
|     guilib:
|     - Forgot to adapt PluginEstimate in guilib
| 
| M	src/guilib/GUIPluginEstimate.cpp
|  
* commit efc9f8bb9b6c3448c55449da4eec474a21231e21
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Dec 20 15:59:12 2007 +0000
| 
|     distribution:
|     - Converted LinearHMM from WordFeatures to StringFeatures<WORD>
|     - Swapped arguments in Histogram::get_log_derivative to match the order in
|       LinearHMM and Distribution
|     - Renamed param_num to num_param in Distribution
|     classifier:
|     - Adapted PluginEstimate accordingly to changes in LinearHMM
|     testsuite/examples:
|     - Adapted accordingly to changes in LinearHMM/Histogram
| 
| M	python-modular/examples/all_distribution.py
| M	python-modular/testcases/distribution.py
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/distributions/Distribution.h
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/distributions/hmm/LinearHMM.h
| D	testsuite/data/distribution/Histogram_False_60_-inf_0_148615665552_DNA_3.m
| A	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| A	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| M	testsuite/generator/config.py
| M	testsuite/generator/distribution.py
| M	testsuite/generator/fileop.py
|  
* commit 757d64ae7159f5a2a2acc17850731082faa1fa91
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 20 15:16:19 2007 +0000
| 
|     introduce WD kernel normalization const
| 
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
|  
* commit 7e03e4b1296b0008f13a6afae7c4e80018c01fef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 20 14:08:36 2007 +0000
| 
|     finally a working WDOCAS
| 
| A	matlab/examples/test_wdocas.m
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/lib/common.h
|  
* commit 8c7242015df3d08a6fda28b20ec13b0a2ed4d63e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Dec 19 15:26:09 2007 +0000
| 
|     distribution:
|     - Extended Histogram to get/set histogram from outside
|     - Converted Histogram from WordFeatures to StringFeatures<WORD>
|     - Misc little fixed in Histogram
|     - Renamed get_log_likelihood_all_examples to get_log_likelihood in
|       Distribution
|     testsuite/examples:
|     - Changed test for Histogram accordingly
|     clustering:
|     - Fixed typo in doc-string of Clustering.i
| 
| M	python-modular/examples/all_distribution.py
| M	python-modular/testcases/distribution.py
| M	src/clustering/Clustering.i
| M	src/distributions/Distribution.cpp
| M	src/distributions/Distribution.h
| M	src/distributions/Distribution.i
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/histogram/Histogram.i
| D	testsuite/data/distribution/Histogram.m
| A	testsuite/data/distribution/Histogram_False_60_-inf_0_148615665552_DNA_3.m
| M	testsuite/generator/config.py
| M	testsuite/generator/distribution.py
|  
* commit ea064c15b22ea7a81b0696d7dfa5ebf8c8c3723a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 19 12:21:02 2007 +0000
| 
|     wdocas needs bytefeatures, adjust interfaces
| 
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
|  
* commit b349e00bb3e89a26dac04ab30b6e05a2f91bb2c1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 19 11:48:07 2007 +0000
| 
|     tuned WDSVM based on OCAS
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
|  
* commit def75a93633d8cb32bd61608f4119387b71844f6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 18 16:55:22 2007 +0000
| 
|     kernel:
|     - Fix instantiation of WeightedDegreeString in guilib
| 
| M	src/guilib/GUIKernel.cpp
|  
* commit 193a3aeb819e298fc099bc55aa134fb36d36e631
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 18 16:48:33 2007 +0000
| 
|     testsuite:
|     - Got rid of ugly params/data confusion (which changed most files due to items
|       swapping lines and stuff)
|     examples:
|     - New matplotlibdir recveived svn:ignores
| 
| M	python-modular/testcases/clustering.py
| M	python-modular/testcases/distribution.py
| M	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_023_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_15_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_0017_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_023_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_15_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_16_Linear_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/LibLinear_0017_1_1e-05.m
| A	testsuite/data/classifier/LibLinear_0017_1_1e-05_True.m
| D	testsuite/data/classifier/LibLinear_023_1_1e-05.m
| A	testsuite/data/classifier/LibLinear_023_1_1e-05_True.m
| D	testsuite/data/classifier/LibLinear_15_1_1e-05.m
| A	testsuite/data/classifier/LibLinear_15_1_1e-05_True.m
| D	testsuite/data/classifier/LibLinear_30_16_00001.m
| A	testsuite/data/classifier/LibLinear_30_16_00001_True.m
| D	testsuite/data/classifier/LibLinear_30_1_00001.m
| A	testsuite/data/classifier/LibLinear_30_1_00001_True.m
| D	testsuite/data/classifier/LibLinear_30_1_1e-05.m
| A	testsuite/data/classifier/LibLinear_30_1_1e-05_True.m
| M	testsuite/data/classifier/LibSVMMultiClass_0017_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_023_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_15_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_0017_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_023_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_15_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_16_Gaussian_0001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_0001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/Perceptron_1_01_1000.m
| M	testsuite/data/classifier/SVMLight_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_0017_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_023_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_15_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_16_Linear_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/SVMLin_0017_1_1e-05.m
| A	testsuite/data/classifier/SVMLin_0017_1_1e-05_True.m
| D	testsuite/data/classifier/SVMLin_023_1_1e-05.m
| A	testsuite/data/classifier/SVMLin_023_1_1e-05_True.m
| D	testsuite/data/classifier/SVMLin_15_1_1e-05.m
| A	testsuite/data/classifier/SVMLin_15_1_1e-05_True.m
| D	testsuite/data/classifier/SVMLin_30_16_00001.m
| A	testsuite/data/classifier/SVMLin_30_16_00001_True.m
| D	testsuite/data/classifier/SVMLin_30_1_00001.m
| A	testsuite/data/classifier/SVMLin_30_1_00001_True.m
| D	testsuite/data/classifier/SVMLin_30_1_1e-05.m
| A	testsuite/data/classifier/SVMLin_30_1_1e-05_True.m
| A	testsuite/data/classifier/SVMOcas_0017_1_1e-05_False.m
| D	testsuite/data/classifier/SVMOcas_0017_1e-05_1.m
| A	testsuite/data/classifier/SVMOcas_023_1_1e-05_False.m
| D	testsuite/data/classifier/SVMOcas_023_1e-05_1.m
| A	testsuite/data/classifier/SVMOcas_15_1_1e-05_False.m
| D	testsuite/data/classifier/SVMOcas_15_1e-05_1.m
| D	testsuite/data/classifier/SVMOcas_30_00001_1.m
| D	testsuite/data/classifier/SVMOcas_30_00001_16.m
| A	testsuite/data/classifier/SVMOcas_30_16_00001_False.m
| A	testsuite/data/classifier/SVMOcas_30_1_00001_False.m
| A	testsuite/data/classifier/SVMOcas_30_1_1e-05_False.m
| D	testsuite/data/classifier/SVMOcas_30_1e-05_1.m
| D	testsuite/data/classifier/SubGradientSVM_05_0017_1_1e-05.m
| A	testsuite/data/classifier/SubGradientSVM_05_0017_1_1e-05_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_023_1_1e-05.m
| A	testsuite/data/classifier/SubGradientSVM_05_023_1_1e-05_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05.m
| A	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_30_16_00001.m
| A	testsuite/data/classifier/SubGradientSVM_05_30_16_00001_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_30_1_00001.m
| A	testsuite/data/classifier/SubGradientSVM_05_30_1_00001_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05.m
| A	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05_False.m
| M	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| M	testsuite/data/distribution/HMM_10_1_60_2_DNA.m
| M	testsuite/data/distribution/Histogram.m
| D	testsuite/data/regression/KRR_16_Gaussian_1e-05_15.m
| D	testsuite/data/regression/KRR_1_Gaussian_1e-05_15.m
| D	testsuite/data/regression/KRR_1_Gaussian_1e-06_15.m
| A	testsuite/data/regression/KRR_Gaussian_16_1e-05_15.m
| A	testsuite/data/regression/KRR_Gaussian_1_1e-05_15.m
| A	testsuite/data/regression/KRR_Gaussian_1_1e-06_15.m
| D	testsuite/data/regression/LibSVR_0017_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/regression/LibSVR_0017_Gaussian_001_1e-05_1_15.m
| D	testsuite/data/regression/LibSVR_023_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/regression/LibSVR_023_Gaussian_001_1e-05_1_15.m
| D	testsuite/data/regression/LibSVR_15_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/regression/LibSVR_15_Gaussian_001_1e-05_1_15.m
| D	testsuite/data/regression/LibSVR_30_15_16_Gaussian_0001_00001.m
| D	testsuite/data/regression/LibSVR_30_15_1_Gaussian_0001_00001.m
| D	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_00001.m
| D	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/regression/LibSVR_30_Gaussian_0001_00001_16_15.m
| A	testsuite/data/regression/LibSVR_30_Gaussian_0001_00001_1_15.m
| A	testsuite/data/regression/LibSVR_30_Gaussian_001_00001_1_15.m
| A	testsuite/data/regression/LibSVR_30_Gaussian_001_1e-05_1_15.m
| D	testsuite/data/regression/SVRLight_0017_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/regression/SVRLight_0017_Gaussian_001_1e-05_1_15.m
| D	testsuite/data/regression/SVRLight_023_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/regression/SVRLight_023_Gaussian_001_1e-05_1_15.m
| D	testsuite/data/regression/SVRLight_15_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/regression/SVRLight_15_Gaussian_001_1e-05_1_15.m
| D	testsuite/data/regression/SVRLight_30_15_1_Gaussian_0001_00001.m
| D	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_00001.m
| D	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/regression/SVRLight_30_Gaussian_0001_00001_1_15.m
| A	testsuite/data/regression/SVRLight_30_Gaussian_001_00001_1_15.m
| A	testsuite/data/regression/SVRLight_30_Gaussian_001_1e-05_1_15.m
| M	testsuite/generator/classifier.py
| M	testsuite/generator/clustering.py
| M	testsuite/generator/config.py
| M	testsuite/generator/distance.py
| M	testsuite/generator/distribution.py
| M	testsuite/generator/fileop.py
| M	testsuite/generator/kernel.py
| M	testsuite/generator/regression.py
|  
* commit d8ade6309b57ecfd83691bfb5f6993361237c0af
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 18 12:11:05 2007 +0000
| 
|     testsuite/examples:
|     - Non kernel/distance-based classifiers now classify on test data (not train)
|     - Label creation has been put into module dataop
|     - Classifiers now operate on data organised in clouds (but shuffled)
|     - run.sh is a bit more verbose in case of ERROR
| 
| M	python-modular/examples/all_classifier.py
| M	python-modular/examples/all_clustering.py
| M	python-modular/testcases/classifier.py
| M	python-modular/testcases/run.sh
| M	python-modular/testcases/util.py
| M	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_023_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_15_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_0017_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_023_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_15_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_16_Linear_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/KNN_EuclidianDistance_1_3.m
| M	testsuite/data/classifier/LDA_1_01.m
| M	testsuite/data/classifier/LibLinear_0017_1_1e-05.m
| M	testsuite/data/classifier/LibLinear_023_1_1e-05.m
| M	testsuite/data/classifier/LibLinear_15_1_1e-05.m
| M	testsuite/data/classifier/LibLinear_30_16_00001.m
| M	testsuite/data/classifier/LibLinear_30_1_00001.m
| M	testsuite/data/classifier/LibLinear_30_1_1e-05.m
| M	testsuite/data/classifier/LibSVMMultiClass_0017_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_023_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_15_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_0017_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_023_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_15_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_16_Gaussian_0001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_0001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/Perceptron_1_01_1000.m
| M	testsuite/data/classifier/SVMLight_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_0017_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_023_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_15_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_16_Linear_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLin_0017_1_1e-05.m
| M	testsuite/data/classifier/SVMLin_023_1_1e-05.m
| M	testsuite/data/classifier/SVMLin_15_1_1e-05.m
| M	testsuite/data/classifier/SVMLin_30_16_00001.m
| M	testsuite/data/classifier/SVMLin_30_1_00001.m
| M	testsuite/data/classifier/SVMLin_30_1_1e-05.m
| M	testsuite/data/classifier/SVMOcas_0017_1e-05_1.m
| M	testsuite/data/classifier/SVMOcas_023_1e-05_1.m
| M	testsuite/data/classifier/SVMOcas_15_1e-05_1.m
| M	testsuite/data/classifier/SVMOcas_30_00001_1.m
| M	testsuite/data/classifier/SVMOcas_30_00001_16.m
| M	testsuite/data/classifier/SVMOcas_30_1e-05_1.m
| M	testsuite/data/classifier/SubGradientSVM_05_0017_1_1e-05.m
| M	testsuite/data/classifier/SubGradientSVM_05_023_1_1e-05.m
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05.m
| M	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| M	testsuite/data/regression/KRR_16_Gaussian_1e-05_15.m
| M	testsuite/data/regression/KRR_1_Gaussian_1e-05_15.m
| M	testsuite/data/regression/KRR_1_Gaussian_1e-06_15.m
| M	testsuite/data/regression/LibSVR_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/regression/LibSVR_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/regression/LibSVR_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/regression/LibSVR_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/regression/LibSVR_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/regression/SVRLight_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/regression/SVRLight_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/regression/SVRLight_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/regression/SVRLight_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/generator/classifier.py
| M	testsuite/generator/config.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/regression.py
|  
* commit cdbd03836e0e12475c1b610317c1edf2d804009f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 17 17:27:33 2007 +0000
| 
|     examples:
|     - Moved examples using matplotlib into subdirectory
|     - Added button to quit
|     - Set window title for known toolkits (QT, GTK, TK)
| 
| A	python-modular/examples/matplotlib/multiple_smvs.py
| A	python-modular/examples/matplotlib/numpy_krr.py
| A	python-modular/examples/matplotlib/numpy_krr_sinc.py
| A	python-modular/examples/matplotlib/numpy_lda.py
| A	python-modular/examples/matplotlib/numpy_svm.py
| A	python-modular/examples/matplotlib/numpy_svmlin.py
| A	python-modular/examples/matplotlib/numpy_svr_sinc.py
| A	python-modular/examples/matplotlib/util.py
| D	python-modular/examples/multiple_svms_matplotlib.py
| D	python-modular/examples/numpy_krr_matplotlib.py
| D	python-modular/examples/numpy_krr_sinc.py
| D	python-modular/examples/numpy_lda_matplotlib.py
| D	python-modular/examples/numpy_svm_matplotlib.py
| D	python-modular/examples/numpy_svmlin_matplotlib.py
| D	python-modular/examples/numpy_svr_sinc.py
|  
* commit 245ef0318b0f2d527d0ceadf9ca5940ae1b9f080
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 17 16:35:34 2007 +0000
| 
|     testsuite/examples:
|     - More or less replaced rows by num_feats and cols/len_{train,test} by num_vec
|       which hopefully makes it easier to understand the differences in row/column
|       vector handling of shogun and python.
| 
| M	python-modular/examples/all_classifier.py
| M	python-modular/examples/all_clustering.py
| M	python-modular/examples/all_distance.py
| M	python-modular/examples/all_distribution.py
| M	python-modular/examples/all_kernels.py
| M	python-modular/examples/all_regression.py
| M	testsuite/generator/__init__.py
| M	testsuite/generator/classifier.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/kernel.py
|  
* commit fc83c73f67d850b64fee91782ae13a762b931d7f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 17 11:56:53 2007 +0000
| 
|     testsuite:
|     - Included fixed Perceptron in testsuite
| 
| M	python-modular/examples/all_classifier.py
| M	python-modular/testcases/classifier.py
| A	testsuite/data/classifier/Perceptron_1_01_1000.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/classifier.py
|  
* commit af42f7d691b266df532216652669e150e08cb9fc
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 17 11:35:38 2007 +0000
| 
|     clustering:
|     - Implemented overload functions for get_merge_distance and get_pairs in
|       Hierarchical, so it can be picked up bei swig.
|     testsuite:
|     - Modified testing for clustering entities accordingly.
| 
| M	python-modular/examples/all_classifier.py
| M	python-modular/examples/all_clustering.py
| M	python-modular/testcases/clustering.py
| M	python-modular/testcases/test.py
| M	src/clustering/Hierarchical.h
| M	src/clustering/Hierarchical.i
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05.m
| M	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| M	testsuite/generator/clustering.py
| M	testsuite/generator/dataop.py
|  
* commit a0aa680e7e46ed6b6051315a27f5df4fdc81444e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 16 16:50:34 2007 +0000
| 
|     kernel:
|     - Cleanup in constructors of WeightedDegreeStringKernel
|     testsuite/examples:
|     - Adjusted to aforementioned changes
| 
| M	python-modular/examples/all_classifier.py
| M	python-modular/examples/all_kernels.py
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_WeightedDegreeString_30_16_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_0017_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_023_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_15_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_0001_00001_0_WeightedDegreeString_30_16_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_0001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_0017_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_023_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_15_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05.m
| D	testsuite/data/kernel/WeightedDegreeString_60_0_DNA_20.m
| A	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| M	testsuite/generator/classifier.py
| M	testsuite/generator/config.py
| M	testsuite/generator/kernel.py
|  
* commit 453ef849ffd91ce5165c75769842816c3d69fe84
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 16 16:18:06 2007 +0000
| 
|     classifier:
|     - Renamed MPD.*, LibSVM_* to file names corresponding to their class name
|     - Adjusted a few accuracies for testing
| 
| M	src/classifier/Classifier.i
| A	src/classifier/svm/LibSVMMultiClass.cpp
| A	src/classifier/svm/LibSVMMultiClass.h
| A	src/classifier/svm/LibSVMMultiClass.i
| A	src/classifier/svm/LibSVMOneClass.cpp
| A	src/classifier/svm/LibSVMOneClass.h
| A	src/classifier/svm/LibSVMOneClass.i
| D	src/classifier/svm/LibSVM_multiclass.cpp
| D	src/classifier/svm/LibSVM_multiclass.h
| D	src/classifier/svm/LibSVM_multiclass.i
| D	src/classifier/svm/LibSVM_oneclass.cpp
| D	src/classifier/svm/LibSVM_oneclass.h
| D	src/classifier/svm/LibSVM_oneclass.i
| D	src/classifier/svm/MPD.cpp
| D	src/classifier/svm/MPD.h
| D	src/classifier/svm/MPD.i
| A	src/classifier/svm/MPDSVM.cpp
| A	src/classifier/svm/MPDSVM.h
| A	src/classifier/svm/MPDSVM.i
| M	src/classifier/svm/MultiClassSVM.i
| M	src/guilib/GUIClassifier.cpp
| M	testsuite/data/classifier/GPBTSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_0017_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_023_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_15_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_16_Linear_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/LibSVMOneClass_0017_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_023_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_15_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_16_Gaussian_0001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_0001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_0017_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_023_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_15_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_16_Linear_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLin_0017_1_1e-05.m
| M	testsuite/data/classifier/SVMLin_023_1_1e-05.m
| M	testsuite/data/classifier/SVMLin_15_1_1e-05.m
| M	testsuite/data/classifier/SVMLin_30_16_00001.m
| M	testsuite/data/classifier/SVMLin_30_1_00001.m
| M	testsuite/data/classifier/SVMLin_30_1_1e-05.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05.m
| M	testsuite/generator/config.py
|  
* commit 4632a40699b7a566454fdbd13bc06a14f25577e5
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 16 15:40:46 2007 +0000
| 
|     distance:
|     - Added switch to disable sqrt in EuclidianDistance
|     - Added example for NormSquared accordingly
|     - Also added different lengths of feature vectors for some distances in
|       examples
| 
| M	python-modular/examples/all_distance.py
| M	src/distance/EuclidianDistance.cpp
| M	src/distance/EuclidianDistance.h
|  
* commit 940a3200533019fbeee9a47869a3e5a117e90e86
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 16 15:08:21 2007 +0000
| 
|     kernel/distance:
|     - Removed unnecessary variable ialen
| 
| M	src/distance/CanberraMetric.cpp
| M	src/distance/ChebyshewMetric.cpp
| M	src/distance/JensenMetric.cpp
| M	src/distance/ManhattanMetric.cpp
| M	src/distance/MinkowskiMetric.cpp
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianShiftKernel.cpp
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/SigmoidKernel.cpp
|  
* commit b5485e18b488773f0994026728c8c87a9a596742
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 16 14:18:36 2007 +0000
| 
|     testsuite:
|     - Fixed a stupid error due to misunderstanding how imports work in Python
|       which lead to a segfaulting WeightedDegreeStringKernel (which misses a
|       trival check in a non-trivial way at the right place).
| 
| M	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_023_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_15_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_0017_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_023_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_15_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_16_Linear_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/KNN_EuclidianDistance_1_3.m
| M	testsuite/data/classifier/LDA_1_01.m
| M	testsuite/data/classifier/LibLinear_0017_1_1e-05.m
| M	testsuite/data/classifier/LibLinear_023_1_1e-05.m
| M	testsuite/data/classifier/LibLinear_15_1_1e-05.m
| M	testsuite/data/classifier/LibLinear_30_16_00001.m
| M	testsuite/data/classifier/LibLinear_30_1_00001.m
| M	testsuite/data/classifier/LibLinear_30_1_1e-05.m
| M	testsuite/data/classifier/LibSVMMultiClass_0017_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_023_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_15_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_0017_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_023_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_15_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_16_Gaussian_0001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_0001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_0017_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_023_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_15_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_16_Linear_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLin_0017_1_1e-05.m
| M	testsuite/data/classifier/SVMLin_023_1_1e-05.m
| M	testsuite/data/classifier/SVMLin_15_1_1e-05.m
| M	testsuite/data/classifier/SVMLin_30_16_00001.m
| M	testsuite/data/classifier/SVMLin_30_1_00001.m
| M	testsuite/data/classifier/SVMLin_30_1_1e-05.m
| M	testsuite/data/classifier/SVMOcas_0017_1e-05_1.m
| M	testsuite/data/classifier/SVMOcas_023_1e-05_1.m
| M	testsuite/data/classifier/SVMOcas_15_1e-05_1.m
| M	testsuite/data/classifier/SVMOcas_30_00001_1.m
| M	testsuite/data/classifier/SVMOcas_30_00001_16.m
| M	testsuite/data/classifier/SVMOcas_30_1e-05_1.m
| M	testsuite/data/classifier/SubGradientSVM_05_0017_1_1e-05.m
| M	testsuite/data/classifier/SubGradientSVM_05_023_1_1e-05.m
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05.m
| M	testsuite/data/distribution/HMM_10_1_60_2_DNA.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/distance.py
|  
* commit 6e3db00684b7f60694a84f897ca74421a2512aac
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 16 12:43:36 2007 +0000
| 
|     testsuite:
|     - Removed bias from regressions' filename.
| 
| A	testsuite/data/regression/LibSVR_0017_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/regression/LibSVR_0017_15_1_Gaussian_001_1e-05_-0981348453653.m
| A	testsuite/data/regression/LibSVR_023_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/regression/LibSVR_023_15_1_Gaussian_001_1e-05_-0872955309592.m
| A	testsuite/data/regression/LibSVR_15_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/regression/LibSVR_15_15_1_Gaussian_001_1e-05_-0279247000531.m
| A	testsuite/data/regression/LibSVR_30_15_16_Gaussian_0001_00001.m
| D	testsuite/data/regression/LibSVR_30_15_16_Gaussian_0001_00001_-00175691471516.m
| A	testsuite/data/regression/LibSVR_30_15_1_Gaussian_0001_00001.m
| D	testsuite/data/regression/LibSVR_30_15_1_Gaussian_0001_00001_-00175691471516.m
| A	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_00001.m
| D	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_00001_-00174108665466.m
| A	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_1e-05_-00174108665466.m
| A	testsuite/data/regression/SVRLight_0017_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/regression/SVRLight_0017_15_1_Gaussian_001_1e-05_-0981348845665.m
| A	testsuite/data/regression/SVRLight_023_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/regression/SVRLight_023_15_1_Gaussian_001_1e-05_-0872954970759.m
| A	testsuite/data/regression/SVRLight_15_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/regression/SVRLight_15_15_1_Gaussian_001_1e-05_-0279247449222.m
| A	testsuite/data/regression/SVRLight_30_15_1_Gaussian_0001_00001.m
| D	testsuite/data/regression/SVRLight_30_15_1_Gaussian_0001_00001_-00175689131529.m
| A	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_00001.m
| D	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_00001_-00174106346562.m
| A	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_1e-05_-00174106346562.m
| M	testsuite/generator/fileop.py
|  
* commit f136ffaf6d76547cd62f653a21111fb072baf099
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 16 12:41:28 2007 +0000
| 
|     testsuite:
|     - Hopefully found a way to keep the 'randomly' generated data more constant,
|       so that the generated testdata files do not change so much
| 
| M	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| M	testsuite/data/distance/CanberraMetric.m
| M	testsuite/data/distance/CanberraWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/ChebyshewMetric.m
| M	testsuite/data/distance/EuclidianDistance.m
| M	testsuite/data/distance/GeodesicMetric.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_False_DNA_3.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_True_DNA_3.m
| M	testsuite/data/distance/JensenMetric.m
| M	testsuite/data/distance/ManhattanMetric.m
| M	testsuite/data/distance/ManhattanWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/MinkowskiMetric_13.m
| M	testsuite/data/distance/SparseEuclidianDistance.m
| M	testsuite/data/distribution/HMM_10_1_60_2_DNA.m
| M	testsuite/data/distribution/Histogram.m
| M	testsuite/data/kernel/AUC_Gaussian_10_15.m
| M	testsuite/data/kernel/Chi2_10_12.m
| M	testsuite/data/kernel/Combined_3_10_60_LinearString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| M	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/Const_230.m
| M	testsuite/data/kernel/Custom_7.m
| M	testsuite/data/kernel/Diag_230.m
| M	testsuite/data/kernel/Distance_CanberraMetric_17.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| M	testsuite/data/kernel/GaussianShift_1_2_13.m
| M	testsuite/data/kernel/Gaussian_13.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LinearWord.m
| M	testsuite/data/kernel/Linear_10.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| M	testsuite/data/kernel/PolyMatchWord_3_False.m
| M	testsuite/data/kernel/PolyMatchWord_3_True.m
| M	testsuite/data/kernel/Poly_False_3_False.m
| M	testsuite/data/kernel/Poly_False_3_True.m
| M	testsuite/data/kernel/Poly_True_3_False.m
| M	testsuite/data/kernel/Poly_True_3_True.m
| M	testsuite/data/kernel/Sigmoid_07_10_05.m
| M	testsuite/data/kernel/Sigmoid_13_10_11.m
| M	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| M	testsuite/data/kernel/SparseGaussian_13.m
| M	testsuite/data/kernel/SparseLinear_10.m
| M	testsuite/data/kernel/SparsePoly_3_10_True_True.m
| M	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_0_DNA_20.m
| M	testsuite/data/kernel/WordMatch_3.m
| M	testsuite/data/regression/KRR_16_Gaussian_1e-05_15.m
| M	testsuite/data/regression/KRR_1_Gaussian_1e-05_15.m
| M	testsuite/data/regression/KRR_1_Gaussian_1e-06_15.m
| A	testsuite/data/regression/LibSVR_0017_15_1_Gaussian_001_1e-05_-0981348453653.m
| D	testsuite/data/regression/LibSVR_0017_15_1_Gaussian_001_1e-05_-0982464339006.m
| A	testsuite/data/regression/LibSVR_023_15_1_Gaussian_001_1e-05_-0872955309592.m
| D	testsuite/data/regression/LibSVR_023_15_1_Gaussian_001_1e-05_-0888053020484.m
| A	testsuite/data/regression/LibSVR_15_15_1_Gaussian_001_1e-05_-0279247000531.m
| D	testsuite/data/regression/LibSVR_15_15_1_Gaussian_001_1e-05_-0325130341179.m
| A	testsuite/data/regression/LibSVR_30_15_16_Gaussian_0001_00001_-00175691471516.m
| D	testsuite/data/regression/LibSVR_30_15_16_Gaussian_0001_00001_0102593062421.m
| A	testsuite/data/regression/LibSVR_30_15_1_Gaussian_0001_00001_-00175691471516.m
| D	testsuite/data/regression/LibSVR_30_15_1_Gaussian_0001_00001_0102593062421.m
| A	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_00001_-00174108665466.m
| D	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_00001_0101668800597.m
| A	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_1e-05_-00174108665466.m
| D	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_1e-05_0101668800597.m
| A	testsuite/data/regression/SVRLight_0017_15_1_Gaussian_001_1e-05_-0981348845665.m
| D	testsuite/data/regression/SVRLight_0017_15_1_Gaussian_001_1e-05_-0982464813435.m
| A	testsuite/data/regression/SVRLight_023_15_1_Gaussian_001_1e-05_-0872954970759.m
| D	testsuite/data/regression/SVRLight_023_15_1_Gaussian_001_1e-05_-0888053358235.m
| A	testsuite/data/regression/SVRLight_15_15_1_Gaussian_001_1e-05_-0279247449222.m
| D	testsuite/data/regression/SVRLight_15_15_1_Gaussian_001_1e-05_-0325130597187.m
| A	testsuite/data/regression/SVRLight_30_15_1_Gaussian_0001_00001_-00175689131529.m
| D	testsuite/data/regression/SVRLight_30_15_1_Gaussian_0001_00001_0102593610898.m
| A	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_00001_-00174106346562.m
| D	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_00001_0101669344133.m
| A	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_1e-05_-00174106346562.m
| D	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_1e-05_0101669344133.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/dataop.py
|  
* commit f44ded14efd046c6f3f80afa11795491039c6d0c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 16 12:04:12 2007 +0000
| 
|     distance:
|     - Removed unnecessary assertion if vectors of lhs and rhs have same length
|     testsuite:
|     - Adapted DNA features to have different lengths in train and test
| 
| M	src/distance/HammingWordDistance.cpp
| M	testsuite/data/distance/CanberraMetric.m
| M	testsuite/data/distance/CanberraWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/ChebyshewMetric.m
| M	testsuite/data/distance/EuclidianDistance.m
| M	testsuite/data/distance/GeodesicMetric.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_False_DNA_3.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_True_DNA_3.m
| M	testsuite/data/distance/JensenMetric.m
| M	testsuite/data/distance/ManhattanMetric.m
| M	testsuite/data/distance/ManhattanWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/MinkowskiMetric_13.m
| M	testsuite/data/distance/SparseEuclidianDistance.m
| M	testsuite/generator/dataop.py
| M	testsuite/generator/distance.py
|  
* commit e6066e71e1a960f5f601f48da0af928fb32bcc92
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 14 21:19:38 2007 +0000
| 
|     start OCAS variant tuned to training low order WD kernel SVMs
| 
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/classifier/svm/WDSVMOcas.i
| M	src/guilib/GUIClassifier.cpp
|  
* commit e30026b839f1b5b9a7c1d96a2e981d19bd3411b4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 14 18:25:10 2007 +0000
| 
|     various fixes based on sebastians many questions
| 
| M	python-modular/examples/all_classifier.py
| M	src/classifier/KNN.cpp
| M	src/classifier/KNN.h
| M	src/classifier/Perceptron.cpp
| M	src/classifier/svm/MultiClassSVM.h
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/Hierarchical.h
| M	src/clustering/KMeans.cpp
| M	src/clustering/KMeans.h
| M	src/clustering/KMeans.i
| M	src/distance/CanberraWordDistance.cpp
| M	src/distance/GeodesicMetric.cpp
| M	src/distance/ManhattanWordDistance.cpp
| M	src/distributions/hmm/HMM.h
| M	src/features/Labels.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
|  
* commit c26c819f16515a5a5eab044233ee878706ae6946
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 14 14:39:18 2007 +0000
| 
|     now the *final* nice correctly set props
| 
| M	Makefile
|  
* commit 3a71c9fff0d58bf63910801687464040efce9ab6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 14 14:17:06 2007 +0000
| 
|     ignore '*doxygen_xml' '*_wrap.h' '*_wrap.cxx' '*.so' '*_doxygen.i' '.depend' '.config' 'tags'
| 
| M	src/classifier/Classifier.h
| M	src/classifier/Classifier.i
| A	src/classifier/svm/WDSVMOcas.cpp
| A	src/classifier/svm/WDSVMOcas.h
| A	src/classifier/svm/WDSVMOcas.i
| M	src/lib/common.h
|  
* commit 62939478dfece09ced2be0f820ad2fa831d2bf84
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Dec 13 11:02:45 2007 +0000
| 
|     python-modular:
|     - Added examples for all regressions
|     - Removed old regression example
| 
| A	python-modular/examples/all_regression.py
| D	python-modular/examples/krr.py
|  
* commit bed916794f3f7c2f72d229adffde252a408a08c0
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Dec 13 10:45:24 2007 +0000
| 
|     python-modular:
|     - Added examples for all distribution
| 
| A	python-modular/examples/all_distribution.py
|  
* commit dcdb16607736365d144b03d2dcc3f1fcefb0b3fb
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Dec 13 10:08:19 2007 +0000
| 
|     python-modular:
|     - Added examples for all distance
| 
| A	python-modular/examples/all_distance.py
|  
* commit a2fe7c0d8aa802eff69ecb38a7c77208fae1f46a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Dec 13 09:46:07 2007 +0000
| 
|     python-modular:
|     - Added examples for all clustering
| 
| M	python-modular/examples/all_classifier.py
| A	python-modular/examples/all_clustering.py
| M	python-modular/examples/all_kernels.py
|  
* commit 7321c1e94f1679553e45ae2ab57a5055de649afc
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Dec 12 16:10:42 2007 +0000
| 
|     testsuite: Found terminator for SubGradientSVM and added the SVM.
| 
| M	python-modular/testcases/classifier.py
| M	testsuite/data/classifier/KNN_EuclidianDistance_1_3.m
| M	testsuite/data/classifier/LDA_1_01.m
| A	testsuite/data/classifier/SubGradientSVM_05_0017_1_1e-05.m
| A	testsuite/data/classifier/SubGradientSVM_05_023_1_1e-05.m
| A	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05.m
| A	testsuite/data/classifier/SubGradientSVM_05_30_16_00001.m
| A	testsuite/data/classifier/SubGradientSVM_05_30_1_00001.m
| A	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05.m
| M	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| M	testsuite/data/distribution/HMM_10_1_60_2_DNA.m
| M	testsuite/data/distribution/Histogram.m
| M	testsuite/data/regression/KRR_16_Gaussian_1e-05_15.m
| M	testsuite/data/regression/KRR_1_Gaussian_1e-05_15.m
| M	testsuite/data/regression/KRR_1_Gaussian_1e-06_15.m
| M	testsuite/generator/classifier.py
| M	testsuite/generator/config.py
|  
* commit bd5141307b543593a9ca29b2a4867a26aa1f2623
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Dec 12 15:40:03 2007 +0000
| 
|     python-modular:
|     - Added examples for all classifiers
|     - Removed old classifier (and omitted kernel) examples
| 
| A	python-modular/examples/all_classifier.py
| M	python-modular/examples/all_kernels.py
| D	python-modular/examples/combined_features_svm.py
| D	python-modular/examples/lda.py
| D	python-modular/examples/multiple_svms.py
| D	python-modular/examples/numpy_svm.py
| D	python-modular/examples/spectrum_kernel.py
| D	python-modular/examples/svm_lin.py
| D	python-modular/examples/wd_kernel_svm.py
| D	python-modular/examples/wd_kernel_svm_linadd_batch.py
|  
* commit 561740e8172ebc7431de8cc7e314e46ce13bcb53
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Dec 12 14:56:24 2007 +0000
| 
|     testsuite/LibSVMOneClass: Extended LibSVMOneClass' constructor and added the
|     SVM to testuite.
| 
| M	src/classifier/svm/LibSVM_oneclass.cpp
| M	src/classifier/svm/LibSVM_oneclass.h
| M	testsuite/data/classifier/KNN_EuclidianDistance_1_3.m
| M	testsuite/data/classifier/LDA_1_01.m
| A	testsuite/data/classifier/LibSVMOneClass_0017_1_Gaussian_001_1e-05_15.m
| A	testsuite/data/classifier/LibSVMOneClass_023_1_Gaussian_001_1e-05_15.m
| A	testsuite/data/classifier/LibSVMOneClass_15_1_Gaussian_001_1e-05_15.m
| A	testsuite/data/classifier/LibSVMOneClass_30_16_Gaussian_0001_00001_15.m
| A	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_0001_00001_15.m
| A	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_00001_15.m
| A	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| M	testsuite/data/distribution/HMM_10_1_60_2_DNA.m
| M	testsuite/data/distribution/Histogram.m
| M	testsuite/data/regression/KRR_16_Gaussian_1e-05_15.m
| M	testsuite/data/regression/KRR_1_Gaussian_1e-05_15.m
| M	testsuite/data/regression/KRR_1_Gaussian_1e-06_15.m
| M	testsuite/generator/classifier.py
|  
* commit 9aa6a46b4aa6715a9c1d410d7a418ffce9970423
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Dec 12 13:53:42 2007 +0000
| 
|     testsuite: Added missing classifier LDA.
| 
| M	python-modular/testcases/classifier.py
| M	testsuite/data/classifier/KNN_EuclidianDistance_1_3.m
| A	testsuite/data/classifier/LDA_1_01.m
| M	testsuite/generator/classifier.py
| M	testsuite/generator/config.py
|  
* commit c9df0c243c8d148233782ee7301b6f4daa4e9447
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Dec 12 12:39:06 2007 +0000
| 
|     python-modular:
|     - Added examples for all kernels
|     - Removed old kernel examples
| 
| A	python-modular/examples/all_kernels.py
| D	python-modular/examples/custom_kernel.py
| D	python-modular/examples/rbf_kernel.py
| D	python-modular/examples/wd_kernel.py
| D	python-modular/examples/wds_kernel.py
| D	python-modular/examples/weighted_spectrum_kernel.py
|  
* commit 2f58b05c84a935cdf2e091eac073fca7abf4a6ce
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 12 09:23:41 2007 +0000
| 
|     fix warning in matlab interface
| 
| M	src/guilib/GUIMatlab.cpp
|  
* commit c072454edff7b3f3b9310e65c7f14a1408b6daec
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 11 16:44:29 2007 +0000
| 
|     testsuite: Ran through pychecker and pylint.
| 
| M	python-modular/testcases/classifier.py
| M	python-modular/testcases/clustering.py
| M	python-modular/testcases/distance.py
| M	python-modular/testcases/distribution.py
| M	python-modular/testcases/kernel.py
| M	python-modular/testcases/regression.py
| M	python-modular/testcases/test.py
| M	python-modular/testcases/util.py
| M	testsuite/generator/__init__.py
| M	testsuite/generator/classifier.py
| M	testsuite/generator/clustering.py
| M	testsuite/generator/config.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/distance.py
| M	testsuite/generator/distribution.py
| M	testsuite/generator/featop.py
| M	testsuite/generator/fileop.py
| M	testsuite/generator/kernel.py
| M	testsuite/generator/regression.py
|  
* commit e6e5202a23ff9ca0b51a7b50740ef2cbdbb7f649
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 11 12:53:01 2007 +0000
| 
|     testsuite: Moved 'enum' with types into config.py.
| 
| M	testsuite/generator/classifier.py
| M	testsuite/generator/clustering.py
| M	testsuite/generator/config.py
| M	testsuite/generator/distance.py
| M	testsuite/generator/distribution.py
| M	testsuite/generator/fileop.py
| M	testsuite/generator/kernel.py
| M	testsuite/generator/regression.py
|  
* commit 11422e1c1c915c3c755db2a14cb8fc712238702f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 11 12:07:46 2007 +0000
| 
|     testsuite: Merged various lists into one module and made some cosmetic
|     changes.
| 
| M	testsuite/generator/__init__.py
| M	testsuite/generator/classifier.py
| D	testsuite/generator/classifierlist.py
| M	testsuite/generator/clustering.py
| D	testsuite/generator/clusteringlist.py
| A	testsuite/generator/config.py
| M	testsuite/generator/distance.py
| M	testsuite/generator/distribution.py
| D	testsuite/generator/distributionlist.py
| D	testsuite/generator/dlist.py
| M	testsuite/generator/fileop.py
| M	testsuite/generator/kernel.py
| D	testsuite/generator/klist.py
| M	testsuite/generator/regression.py
| D	testsuite/generator/regressionlist.py
|  
* commit 35f7583723dcaa1ff227f2a9e77b3911f4994cf4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 10 17:24:23 2007 +0000
| 
|     Added support for regressions to testsuite.
|     Found a memory allocation bug in SVRLight when using multiple threads, but did
|     not find a way to fix it yet.
| 
| A	python-modular/testcases/regression.py
| M	python-modular/testcases/test.py
| A	testsuite/data/regression/KRR_16_Gaussian_1e-05_15.m
| A	testsuite/data/regression/KRR_1_Gaussian_1e-05_15.m
| A	testsuite/data/regression/KRR_1_Gaussian_1e-06_15.m
| A	testsuite/data/regression/LibSVR_0017_15_1_Gaussian_001_1e-05_-0982464339006.m
| A	testsuite/data/regression/LibSVR_023_15_1_Gaussian_001_1e-05_-0888053020484.m
| A	testsuite/data/regression/LibSVR_15_15_1_Gaussian_001_1e-05_-0325130341179.m
| A	testsuite/data/regression/LibSVR_30_15_16_Gaussian_0001_00001_0102593062421.m
| A	testsuite/data/regression/LibSVR_30_15_1_Gaussian_0001_00001_0102593062421.m
| A	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_00001_0101668800597.m
| A	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_1e-05_0101668800597.m
| A	testsuite/data/regression/SVRLight_0017_15_1_Gaussian_001_1e-05_-0982464813435.m
| A	testsuite/data/regression/SVRLight_023_15_1_Gaussian_001_1e-05_-0888053358235.m
| A	testsuite/data/regression/SVRLight_15_15_1_Gaussian_001_1e-05_-0325130597187.m
| A	testsuite/data/regression/SVRLight_30_15_1_Gaussian_0001_00001_0102593610898.m
| A	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_00001_0101669344133.m
| A	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_1e-05_0101669344133.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/fileop.py
| A	testsuite/generator/regression.py
| A	testsuite/generator/regressionlist.py
|  
* commit b96d1900505b6c59eda578129e2518b8b1fcc337
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 10 14:46:06 2007 +0000
| 
|     Some cleanups for clustering in testsuite.
| 
| M	python-modular/testcases/clustering.py
| A	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| D	testsuite/data/clustering/Hierarchical_EuclidianDistance_3_1.m
| A	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| D	testsuite/data/clustering/KMeans_EuclidianDistance_3_1.m
| M	testsuite/generator/clustering.py
|  
* commit a32ff379f2039c2fbb391fdf8c0cc5eabed07d5a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 10 14:38:13 2007 +0000
| 
|     Added support for distributions in testsuite, but again, dunno yet how to test
|     properly.
|     Fixed erroneous delete statement in HMM's destructor.
| 
| A	python-modular/testcases/distribution.py
| M	python-modular/testcases/test.py
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/hmm/HMM.cpp
| A	testsuite/data/distribution/HMM_10_1_60_2_DNA.m
| A	testsuite/data/distribution/Histogram.m
| M	testsuite/generator/__init__.py
| A	testsuite/generator/distribution.py
| A	testsuite/generator/distributionlist.py
| M	testsuite/generator/fileop.py
|  
* commit bcc8523bedc6f3c03c041e0158cf39fa8732f894
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 10 12:53:11 2007 +0000
| 
|     Added support for clustering in testsuite. But since classify() returns NULL,
|     dunno yet what to test for.
| 
| A	python-modular/testcases/clustering.py
| M	python-modular/testcases/test.py
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/Hierarchical.h
| M	src/clustering/KMeans.cpp
| M	src/clustering/KMeans.h
| A	testsuite/data/clustering/Hierarchical_EuclidianDistance_3_1.m
| A	testsuite/data/clustering/KMeans_EuclidianDistance_3_1.m
| M	testsuite/generator/__init__.py
| A	testsuite/generator/clustering.py
| A	testsuite/generator/clusteringlist.py
| M	testsuite/generator/fileop.py
|  
* commit 0bfbb5c13205caa6aacd87342c7d3ee6417c0597
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 9 11:08:41 2007 +0000
| 
|     Fixed a few compile issues with CustomKernel.
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIR.cpp
|  
* commit ae6309c33efde3cc053e8096f61344987670c331
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Dec 8 14:24:31 2007 +0000
| 
|     Added testdata files for classifiers.
| 
| A	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_023_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_15_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_15_16_0001_00001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_15_1_0001_00001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_15_1_001_00001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_0017_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/GPBTSVM_0017_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/GPBTSVM_023_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/GPBTSVM_023_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/GPBTSVM_15_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/GPBTSVM_15_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/GPBTSVM_30_15_16_Gaussian_0001_00001.m
| A	testsuite/data/classifier/GPBTSVM_30_15_16_Linear_0001_00001.m
| A	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_0001_00001.m
| A	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_00001.m
| A	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_0001_00001.m
| A	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_00001.m
| A	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_WeightedDegreeString_30_16_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_0017_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_023_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_15_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| A	testsuite/data/classifier/KNN_EuclidianDistance_1_3.m
| A	testsuite/data/classifier/LibLinear_0017_1_1e-05.m
| A	testsuite/data/classifier/LibLinear_023_1_1e-05.m
| A	testsuite/data/classifier/LibLinear_15_1_1e-05.m
| A	testsuite/data/classifier/LibLinear_30_16_00001.m
| A	testsuite/data/classifier/LibLinear_30_1_00001.m
| A	testsuite/data/classifier/LibLinear_30_1_1e-05.m
| A	testsuite/data/classifier/LibSVMMultiClass_0017_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_023_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_15_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_30_15_16_0001_00001_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_30_15_1_0001_00001_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_00001_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/LibSVM_0017_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/LibSVM_023_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/LibSVM_15_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/LibSVM_30_15_16_Gaussian_0001_00001.m
| A	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_0001_00001.m
| A	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_00001.m
| A	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/MPDSVM_0017_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/MPDSVM_023_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/MPDSVM_15_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/MPDSVM_30_15_16_Gaussian_0001_00001.m
| A	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_0001_00001.m
| A	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_00001.m
| A	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/SVMLight_0017_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/SVMLight_0017_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/SVMLight_023_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/SVMLight_023_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/SVMLight_15_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/SVMLight_15_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/SVMLight_30_15_16_Gaussian_0001_00001.m
| A	testsuite/data/classifier/SVMLight_30_15_16_Linear_0001_00001.m
| A	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_0001_00001.m
| A	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_00001.m
| A	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/SVMLight_30_15_1_Linear_0001_00001.m
| A	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_00001.m
| A	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_0001_00001_0_WeightedDegreeString_30_16_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_0001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_0017_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_023_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_15_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| A	testsuite/data/classifier/SVMLin_0017_1_1e-05.m
| A	testsuite/data/classifier/SVMLin_023_1_1e-05.m
| A	testsuite/data/classifier/SVMLin_15_1_1e-05.m
| A	testsuite/data/classifier/SVMLin_30_16_00001.m
| A	testsuite/data/classifier/SVMLin_30_1_00001.m
| A	testsuite/data/classifier/SVMLin_30_1_1e-05.m
| A	testsuite/data/classifier/SVMOcas_0017_1e-05_1.m
| A	testsuite/data/classifier/SVMOcas_023_1e-05_1.m
| A	testsuite/data/classifier/SVMOcas_15_1e-05_1.m
| A	testsuite/data/classifier/SVMOcas_30_00001_1.m
| A	testsuite/data/classifier/SVMOcas_30_00001_16.m
| A	testsuite/data/classifier/SVMOcas_30_1e-05_1.m
|  
* commit 8adc842cc2edaae33f9286fedcdafddd56116342
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Dec 8 14:23:40 2007 +0000
| 
|     What started out to be an addition of classifiers Perceptron and KNN to the
|     testsuite became a slightly bigger change. And since many testdata files have
|     changed, svm was renamed to classifier to have even more changed files.
| 
| A	python-modular/testcases/classifier.py
| M	python-modular/testcases/distance.py
| M	python-modular/testcases/kernel.py
| M	python-modular/testcases/run.sh
| D	python-modular/testcases/svm.py
| M	python-modular/testcases/test.py
| M	python-modular/testcases/util.py
| M	src/classifier/KNN.cpp
| M	src/classifier/KNN.h
| M	src/classifier/Perceptron.cpp
| M	src/classifier/Perceptron.h
| M	testsuite/data/distance/CanberraMetric.m
| A	testsuite/data/distance/CanberraWordDistance_60_0_False_DNA_3.m
| D	testsuite/data/distance/CanberraWordDistance_False_60_0_DNA_3.m
| M	testsuite/data/distance/ChebyshewMetric.m
| M	testsuite/data/distance/EuclidianDistance.m
| M	testsuite/data/distance/GeodesicMetric.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_False_DNA_3.m
| A	testsuite/data/distance/HammingWordDistance_60_0_False_True_DNA_3.m
| D	testsuite/data/distance/HammingWordDistance_60_0_True_False_DNA_3.m
| M	testsuite/data/distance/JensenMetric.m
| M	testsuite/data/distance/ManhattanMetric.m
| A	testsuite/data/distance/ManhattanWordDistance_60_0_False_DNA_3.m
| D	testsuite/data/distance/ManhattanWordDistance_False_60_0_DNA_3.m
| M	testsuite/data/distance/MinkowskiMetric_13.m
| M	testsuite/data/distance/SparseEuclidianDistance.m
| M	testsuite/data/kernel/AUC_Gaussian_10_15.m
| M	testsuite/data/kernel/Chi2_10_12.m
| A	testsuite/data/kernel/Combined_3_10_60_LinearString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| D	testsuite/data/kernel/Combined_60_3_LinearString_FixedDegreeString_True_10_DNA_DNA_60_PolyMatchString_60_10_10_3_DNA.m
| M	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/Const_230.m
| M	testsuite/data/kernel/Custom_7.m
| M	testsuite/data/kernel/Diag_230.m
| M	testsuite/data/kernel/Distance_CanberraMetric_17.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| D	testsuite/data/kernel/GaussianShift_1_13_2.m
| A	testsuite/data/kernel/GaussianShift_1_2_13.m
| M	testsuite/data/kernel/Gaussian_13.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LinearWord.m
| M	testsuite/data/kernel/Linear_10.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| M	testsuite/data/kernel/PolyMatchWord_3_False.m
| M	testsuite/data/kernel/PolyMatchWord_3_True.m
| M	testsuite/data/kernel/Poly_False_3_False.m
| M	testsuite/data/kernel/Poly_False_3_True.m
| M	testsuite/data/kernel/Poly_True_3_False.m
| M	testsuite/data/kernel/Poly_True_3_True.m
| D	testsuite/data/kernel/Sigmoid_05_07_10.m
| A	testsuite/data/kernel/Sigmoid_07_10_05.m
| D	testsuite/data/kernel/Sigmoid_11_13_10.m
| A	testsuite/data/kernel/Sigmoid_13_10_11.m
| A	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| D	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_DNA_7_5.m
| M	testsuite/data/kernel/SparseGaussian_13.m
| M	testsuite/data/kernel/SparseLinear_10.m
| A	testsuite/data/kernel/SparsePoly_3_10_True_True.m
| D	testsuite/data/kernel/SparsePoly_3_True_True_10.m
| M	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| A	testsuite/data/kernel/WeightedDegreeString_60_0_DNA_20.m
| D	testsuite/data/kernel/WeightedDegreeString_60_20_DNA_0.m
| M	testsuite/data/kernel/WordMatch_3.m
| D	testsuite/data/svm/GMNPSVM_16_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/GMNPSVM_1_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/GMNPSVM_1_00001_30_15_001_Gaussian.m
| D	testsuite/data/svm/GMNPSVM_1_1e-05_0017_15_001_Gaussian.m
| D	testsuite/data/svm/GMNPSVM_1_1e-05_023_15_001_Gaussian.m
| D	testsuite/data/svm/GMNPSVM_1_1e-05_15_15_001_Gaussian.m
| D	testsuite/data/svm/GMNPSVM_1_1e-05_30_15_001_Gaussian.m
| D	testsuite/data/svm/GPBTSVM_16_00001_15_30_0001_Linear.m
| D	testsuite/data/svm/GPBTSVM_16_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/GPBTSVM_16_2_60_0_0001_30_CommUlongString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_16_2_60_0_0001_30_CommWordString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_16_60_0001_30_0_WeightedDegreeString_00001_3_DNA.m
| D	testsuite/data/svm/GPBTSVM_16_60_0001_30_WeightedDegreePositionString_00001_20_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_00001_15_30_0001_Linear.m
| D	testsuite/data/svm/GPBTSVM_1_00001_15_30_001_Linear.m
| D	testsuite/data/svm/GPBTSVM_1_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/GPBTSVM_1_00001_30_15_001_Gaussian.m
| D	testsuite/data/svm/GPBTSVM_1_1e-05_0017_15_001_Gaussian.m
| D	testsuite/data/svm/GPBTSVM_1_1e-05_023_15_001_Gaussian.m
| D	testsuite/data/svm/GPBTSVM_1_1e-05_15_0017_001_Linear.m
| D	testsuite/data/svm/GPBTSVM_1_1e-05_15_023_001_Linear.m
| D	testsuite/data/svm/GPBTSVM_1_1e-05_15_15_001_Gaussian.m
| D	testsuite/data/svm/GPBTSVM_1_1e-05_15_15_001_Linear.m
| D	testsuite/data/svm/GPBTSVM_1_1e-05_15_30_001_Linear.m
| D	testsuite/data/svm/GPBTSVM_1_1e-05_30_15_001_Gaussian.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_0001_30_CommUlongString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_0001_30_CommWordString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_0017_CommUlongString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_0017_CommWordString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_023_CommUlongString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_023_CommWordString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_15_CommUlongString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_15_CommWordString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_30_CommUlongString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_30_CommUlongString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_30_CommWordString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_30_CommWordString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_0001_30_0_WeightedDegreeString_00001_3_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_0001_30_WeightedDegreePositionString_00001_20_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_0017_0_WeightedDegreeString_1e-05_3_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_0017_WeightedDegreePositionString_1e-05_20_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_023_0_WeightedDegreeString_1e-05_3_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_023_WeightedDegreePositionString_1e-05_20_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_15_0_WeightedDegreeString_1e-05_3_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_15_WeightedDegreePositionString_1e-05_20_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_30_0_WeightedDegreeString_00001_3_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_30_0_WeightedDegreeString_1e-05_3_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_30_WeightedDegreePositionString_00001_20_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_30_WeightedDegreePositionString_1e-05_20_DNA.m
| D	testsuite/data/svm/LibLinear_16_00001_30.m
| D	testsuite/data/svm/LibLinear_1_00001_30.m
| D	testsuite/data/svm/LibLinear_1_1e-05_0017.m
| D	testsuite/data/svm/LibLinear_1_1e-05_023.m
| D	testsuite/data/svm/LibLinear_1_1e-05_15.m
| D	testsuite/data/svm/LibLinear_1_1e-05_30.m
| D	testsuite/data/svm/LibSVMMultiClass_16_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/LibSVMMultiClass_1_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/LibSVMMultiClass_1_00001_30_15_001_Gaussian.m
| D	testsuite/data/svm/LibSVMMultiClass_1_1e-05_0017_15_001_Gaussian.m
| D	testsuite/data/svm/LibSVMMultiClass_1_1e-05_023_15_001_Gaussian.m
| D	testsuite/data/svm/LibSVMMultiClass_1_1e-05_15_15_001_Gaussian.m
| D	testsuite/data/svm/LibSVMMultiClass_1_1e-05_30_15_001_Gaussian.m
| D	testsuite/data/svm/LibSVM_16_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/LibSVM_1_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/LibSVM_1_00001_30_15_001_Gaussian.m
| D	testsuite/data/svm/LibSVM_1_1e-05_0017_15_001_Gaussian.m
| D	testsuite/data/svm/LibSVM_1_1e-05_023_15_001_Gaussian.m
| D	testsuite/data/svm/LibSVM_1_1e-05_15_15_001_Gaussian.m
| D	testsuite/data/svm/LibSVM_1_1e-05_30_15_001_Gaussian.m
| D	testsuite/data/svm/MPDSVM_16_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/MPDSVM_1_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/MPDSVM_1_00001_30_15_001_Gaussian.m
| D	testsuite/data/svm/MPDSVM_1_1e-05_0017_15_001_Gaussian.m
| D	testsuite/data/svm/MPDSVM_1_1e-05_023_15_001_Gaussian.m
| D	testsuite/data/svm/MPDSVM_1_1e-05_15_15_001_Gaussian.m
| D	testsuite/data/svm/MPDSVM_1_1e-05_30_15_001_Gaussian.m
| D	testsuite/data/svm/SVMLight_16_00001_15_30_0001_Linear.m
| D	testsuite/data/svm/SVMLight_16_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/SVMLight_16_2_60_0_0001_30_CommUlongString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_16_2_60_0_0001_30_CommWordString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_16_60_0001_30_0_WeightedDegreeString_00001_3_DNA.m
| D	testsuite/data/svm/SVMLight_16_60_0001_30_WeightedDegreePositionString_00001_20_DNA.m
| D	testsuite/data/svm/SVMLight_1_00001_15_30_0001_Linear.m
| D	testsuite/data/svm/SVMLight_1_00001_15_30_001_Linear.m
| D	testsuite/data/svm/SVMLight_1_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/SVMLight_1_00001_30_15_001_Gaussian.m
| D	testsuite/data/svm/SVMLight_1_1e-05_0017_15_001_Gaussian.m
| D	testsuite/data/svm/SVMLight_1_1e-05_023_15_001_Gaussian.m
| D	testsuite/data/svm/SVMLight_1_1e-05_15_0017_001_Linear.m
| D	testsuite/data/svm/SVMLight_1_1e-05_15_023_001_Linear.m
| D	testsuite/data/svm/SVMLight_1_1e-05_15_15_001_Gaussian.m
| D	testsuite/data/svm/SVMLight_1_1e-05_15_15_001_Linear.m
| D	testsuite/data/svm/SVMLight_1_1e-05_15_30_001_Linear.m
| D	testsuite/data/svm/SVMLight_1_1e-05_30_15_001_Gaussian.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_0001_30_CommUlongString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_0001_30_CommWordString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_0017_CommUlongString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_0017_CommWordString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_023_CommUlongString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_023_CommWordString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_15_CommUlongString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_15_CommWordString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_30_CommUlongString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_30_CommUlongString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_30_CommWordString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_30_CommWordString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_0001_30_0_WeightedDegreeString_00001_3_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_0001_30_WeightedDegreePositionString_00001_20_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_001_0017_0_WeightedDegreeString_1e-05_3_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_001_0017_WeightedDegreePositionString_1e-05_20_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_001_023_0_WeightedDegreeString_1e-05_3_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_001_023_WeightedDegreePositionString_1e-05_20_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_001_15_0_WeightedDegreeString_1e-05_3_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_001_15_WeightedDegreePositionString_1e-05_20_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_001_30_0_WeightedDegreeString_00001_3_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_001_30_0_WeightedDegreeString_1e-05_3_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_001_30_WeightedDegreePositionString_00001_20_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_001_30_WeightedDegreePositionString_1e-05_20_DNA.m
| D	testsuite/data/svm/SVMLin_16_00001_30.m
| D	testsuite/data/svm/SVMLin_1_00001_30.m
| D	testsuite/data/svm/SVMLin_1_1e-05_0017.m
| D	testsuite/data/svm/SVMLin_1_1e-05_023.m
| D	testsuite/data/svm/SVMLin_1_1e-05_15.m
| D	testsuite/data/svm/SVMLin_1_1e-05_30.m
| D	testsuite/data/svm/SVMOcas_16_00001_30.m
| D	testsuite/data/svm/SVMOcas_1_00001_30.m
| D	testsuite/data/svm/SVMOcas_1_1e-05_0017.m
| D	testsuite/data/svm/SVMOcas_1_1e-05_023.m
| D	testsuite/data/svm/SVMOcas_1_1e-05_15.m
| D	testsuite/data/svm/SVMOcas_1_1e-05_30.m
| M	testsuite/generator/__init__.py
| A	testsuite/generator/classifier.py
| A	testsuite/generator/classifierlist.py
| M	testsuite/generator/distance.py
| M	testsuite/generator/fileop.py
| M	testsuite/generator/kernel.py
| D	testsuite/generator/svm.py
| D	testsuite/generator/svmlist.py
|  
* commit 81aef037e9d423305b73b3f890567992a656cfa8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Dec 7 11:53:48 2007 +0000
| 
|     Forgot to implement bias handling in test for Linear SVMs.
| 
| M	python-modular/testcases/svm.py
| M	testsuite/data/svm/LibLinear_16_00001_30.m
| M	testsuite/data/svm/LibLinear_1_00001_30.m
| M	testsuite/data/svm/LibLinear_1_1e-05_0017.m
| M	testsuite/data/svm/LibLinear_1_1e-05_023.m
| M	testsuite/data/svm/LibLinear_1_1e-05_15.m
| M	testsuite/data/svm/LibLinear_1_1e-05_30.m
| M	testsuite/data/svm/SVMLin_16_00001_30.m
| M	testsuite/data/svm/SVMLin_1_00001_30.m
| M	testsuite/data/svm/SVMLin_1_1e-05_0017.m
| M	testsuite/data/svm/SVMLin_1_1e-05_023.m
| M	testsuite/data/svm/SVMLin_1_1e-05_15.m
| M	testsuite/data/svm/SVMLin_1_1e-05_30.m
| M	testsuite/generator/svmlist.py
|  
* commit 80d918e89659664447af9e0cf07cf8678bea9588
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Dec 7 11:40:35 2007 +0000
| 
|     - Added testing support for Linear SVMs SubGradientSVM (defunct), SVMOcas,
|       SVMLin, LibLinear.
|     - Dropped bias from test files' filenames which might result in fewer
|       filename fluctuation.
|     - Fixed a memory problem in LocalAlignmentStringKernel found through valgrind
|       when investigating another issue.
| 
| M	python-modular/testcases/svm.py
| M	python-modular/testcases/util.py
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/LibLinear.h
| M	src/kernel/LocalAlignmentStringKernel.cpp
| A	testsuite/data/svm/GMNPSVM_16_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/GMNPSVM_16_30_15_00_0001_Gaussian_00001.m
| A	testsuite/data/svm/GMNPSVM_1_00001_30_15_0001_Gaussian.m
| A	testsuite/data/svm/GMNPSVM_1_00001_30_15_001_Gaussian.m
| D	testsuite/data/svm/GMNPSVM_1_0017_15_00_001_Gaussian_1e-05.m
| D	testsuite/data/svm/GMNPSVM_1_023_15_00_001_Gaussian_1e-05.m
| D	testsuite/data/svm/GMNPSVM_1_15_15_00_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GMNPSVM_1_1e-05_0017_15_001_Gaussian.m
| A	testsuite/data/svm/GMNPSVM_1_1e-05_023_15_001_Gaussian.m
| A	testsuite/data/svm/GMNPSVM_1_1e-05_15_15_001_Gaussian.m
| A	testsuite/data/svm/GMNPSVM_1_1e-05_30_15_001_Gaussian.m
| D	testsuite/data/svm/GMNPSVM_1_30_15_00_0001_Gaussian_00001.m
| D	testsuite/data/svm/GMNPSVM_1_30_15_00_001_Gaussian_00001.m
| D	testsuite/data/svm/GMNPSVM_1_30_15_00_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GPBTSVM_16_00001_15_30_0001_Linear.m
| A	testsuite/data/svm/GPBTSVM_16_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/GPBTSVM_16_15_30_-508687312495_0001_Linear_00001.m
| D	testsuite/data/svm/GPBTSVM_16_20_30_60_DNA_00773056062963_0001_WeightedDegreePositionString_00001.m
| A	testsuite/data/svm/GPBTSVM_16_2_60_0_0001_30_CommUlongString_False_00001_3_False_DNA.m
| A	testsuite/data/svm/GPBTSVM_16_2_60_0_0001_30_CommWordString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_16_2_60_0_0001_CommUlongString_False_00001_3_False_30_DNA_0887334266458.m
| D	testsuite/data/svm/GPBTSVM_16_2_60_0_0001_CommWordString_False_00001_3_False_30_DNA_-0303225609186.m
| D	testsuite/data/svm/GPBTSVM_16_30_15_-00613100758013_0001_Gaussian_00001.m
| A	testsuite/data/svm/GPBTSVM_16_60_0001_30_0_WeightedDegreeString_00001_3_DNA.m
| A	testsuite/data/svm/GPBTSVM_16_60_0001_30_WeightedDegreePositionString_00001_20_DNA.m
| D	testsuite/data/svm/GPBTSVM_16_60_0001_WeightedDegreeString_0_00001_3_30_DNA_00943187331216.m
| A	testsuite/data/svm/GPBTSVM_1_00001_15_30_0001_Linear.m
| A	testsuite/data/svm/GPBTSVM_1_00001_15_30_001_Linear.m
| A	testsuite/data/svm/GPBTSVM_1_00001_30_15_0001_Gaussian.m
| A	testsuite/data/svm/GPBTSVM_1_00001_30_15_001_Gaussian.m
| D	testsuite/data/svm/GPBTSVM_1_0017_15_0994887705366_001_Gaussian_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_023_15_0930833660838_001_Gaussian_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_15_0017_0966278485944_001_Linear_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_15_023_0543767751007_001_Linear_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_15_15_-132658839231_001_Linear_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_15_15_0548915753829_001_Gaussian_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_15_30_-508687201949_001_Linear_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_15_30_-508687312495_0001_Linear_00001.m
| D	testsuite/data/svm/GPBTSVM_1_15_30_-508687312495_001_Linear_00001.m
| A	testsuite/data/svm/GPBTSVM_1_1e-05_0017_15_001_Gaussian.m
| A	testsuite/data/svm/GPBTSVM_1_1e-05_023_15_001_Gaussian.m
| A	testsuite/data/svm/GPBTSVM_1_1e-05_15_0017_001_Linear.m
| A	testsuite/data/svm/GPBTSVM_1_1e-05_15_023_001_Linear.m
| A	testsuite/data/svm/GPBTSVM_1_1e-05_15_15_001_Gaussian.m
| A	testsuite/data/svm/GPBTSVM_1_1e-05_15_15_001_Linear.m
| A	testsuite/data/svm/GPBTSVM_1_1e-05_15_30_001_Linear.m
| A	testsuite/data/svm/GPBTSVM_1_1e-05_30_15_001_Gaussian.m
| D	testsuite/data/svm/GPBTSVM_1_20_0017_60_DNA_0986524825149_001_WeightedDegreePositionString_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_20_023_60_DNA_0817688815924_001_WeightedDegreePositionString_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_20_15_60_DNA_00773056062963_001_WeightedDegreePositionString_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_20_30_60_DNA_00773056062963_0001_WeightedDegreePositionString_00001.m
| D	testsuite/data/svm/GPBTSVM_1_20_30_60_DNA_00773056062963_001_WeightedDegreePositionString_00001.m
| D	testsuite/data/svm/GPBTSVM_1_20_30_60_DNA_00773056062963_001_WeightedDegreePositionString_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_0001_30_CommUlongString_False_00001_3_False_DNA.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_0001_30_CommWordString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_0001_CommUlongString_False_00001_3_False_30_DNA_0887334266458.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_0001_CommWordString_False_00001_3_False_30_DNA_-0303225609186.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_0017_CommUlongString_False_1e-05_3_False_DNA.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_0017_CommWordString_False_1e-05_3_False_DNA.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_023_CommUlongString_False_1e-05_3_False_DNA.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_023_CommWordString_False_1e-05_3_False_DNA.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_15_CommUlongString_False_1e-05_3_False_DNA.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_15_CommWordString_False_1e-05_3_False_DNA.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_30_CommUlongString_False_00001_3_False_DNA.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_30_CommUlongString_False_1e-05_3_False_DNA.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_30_CommWordString_False_00001_3_False_DNA.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_30_CommWordString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_00001_3_False_30_DNA_0887334266458.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_1e-05_3_False_0017_DNA_0998303655915.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_1e-05_3_False_023_DNA_0977049462379.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_1e-05_3_False_15_DNA_0887334331162.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_1e-05_3_False_30_DNA_0887334331162.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_00001_3_False_30_DNA_-0303225609186.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_1e-05_3_False_0017_DNA_-0992443037178.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_1e-05_3_False_023_DNA_-0897758738285.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_1e-05_3_False_15_DNA_-0333209053609.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_1e-05_3_False_30_DNA_-0303223251273.m
| D	testsuite/data/svm/GPBTSVM_1_30_15_-00613100758013_0001_Gaussian_00001.m
| D	testsuite/data/svm/GPBTSVM_1_30_15_-00613100758013_001_Gaussian_00001.m
| D	testsuite/data/svm/GPBTSVM_1_30_15_-00613132524843_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_60_0001_30_0_WeightedDegreeString_00001_3_DNA.m
| A	testsuite/data/svm/GPBTSVM_1_60_0001_30_WeightedDegreePositionString_00001_20_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_0001_WeightedDegreeString_0_00001_3_30_DNA_00943187331216.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_0017_0_WeightedDegreeString_1e-05_3_DNA.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_0017_WeightedDegreePositionString_1e-05_20_DNA.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_023_0_WeightedDegreeString_1e-05_3_DNA.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_023_WeightedDegreePositionString_1e-05_20_DNA.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_15_0_WeightedDegreeString_1e-05_3_DNA.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_15_WeightedDegreePositionString_1e-05_20_DNA.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_30_0_WeightedDegreeString_00001_3_DNA.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_30_0_WeightedDegreeString_1e-05_3_DNA.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_30_WeightedDegreePositionString_00001_20_DNA.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_30_WeightedDegreePositionString_1e-05_20_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_00001_3_30_DNA_00943187331216.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_0017_DNA_0988417792297.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_023_DNA_0843299538078.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_15_DNA_0102767939962.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_30_DNA_00943162018287.m
| A	testsuite/data/svm/LibLinear_16_00001_30.m
| A	testsuite/data/svm/LibLinear_1_00001_30.m
| A	testsuite/data/svm/LibLinear_1_1e-05_0017.m
| A	testsuite/data/svm/LibLinear_1_1e-05_023.m
| A	testsuite/data/svm/LibLinear_1_1e-05_15.m
| A	testsuite/data/svm/LibLinear_1_1e-05_30.m
| A	testsuite/data/svm/LibSVMMultiClass_16_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/LibSVMMultiClass_16_30_15_00_0001_Gaussian_00001.m
| A	testsuite/data/svm/LibSVMMultiClass_1_00001_30_15_0001_Gaussian.m
| A	testsuite/data/svm/LibSVMMultiClass_1_00001_30_15_001_Gaussian.m
| D	testsuite/data/svm/LibSVMMultiClass_1_0017_15_00_001_Gaussian_1e-05.m
| D	testsuite/data/svm/LibSVMMultiClass_1_023_15_00_001_Gaussian_1e-05.m
| D	testsuite/data/svm/LibSVMMultiClass_1_15_15_00_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVMMultiClass_1_1e-05_0017_15_001_Gaussian.m
| A	testsuite/data/svm/LibSVMMultiClass_1_1e-05_023_15_001_Gaussian.m
| A	testsuite/data/svm/LibSVMMultiClass_1_1e-05_15_15_001_Gaussian.m
| A	testsuite/data/svm/LibSVMMultiClass_1_1e-05_30_15_001_Gaussian.m
| D	testsuite/data/svm/LibSVMMultiClass_1_30_15_00_0001_Gaussian_00001.m
| D	testsuite/data/svm/LibSVMMultiClass_1_30_15_00_001_Gaussian_00001.m
| D	testsuite/data/svm/LibSVMMultiClass_1_30_15_00_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVM_16_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/LibSVM_16_30_15_-00613016037411_0001_Gaussian_00001.m
| A	testsuite/data/svm/LibSVM_1_00001_30_15_0001_Gaussian.m
| A	testsuite/data/svm/LibSVM_1_00001_30_15_001_Gaussian.m
| D	testsuite/data/svm/LibSVM_1_0017_15_0994889338985_001_Gaussian_1e-05.m
| D	testsuite/data/svm/LibSVM_1_023_15_0930835635432_001_Gaussian_1e-05.m
| D	testsuite/data/svm/LibSVM_1_15_15_0548916216423_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVM_1_1e-05_0017_15_001_Gaussian.m
| A	testsuite/data/svm/LibSVM_1_1e-05_023_15_001_Gaussian.m
| A	testsuite/data/svm/LibSVM_1_1e-05_15_15_001_Gaussian.m
| A	testsuite/data/svm/LibSVM_1_1e-05_30_15_001_Gaussian.m
| D	testsuite/data/svm/LibSVM_1_30_15_-00613016037411_0001_Gaussian_00001.m
| D	testsuite/data/svm/LibSVM_1_30_15_-00613016037411_001_Gaussian_00001.m
| D	testsuite/data/svm/LibSVM_1_30_15_-00613118313148_001_Gaussian_1e-05.m
| A	testsuite/data/svm/MPDSVM_16_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/MPDSVM_16_30_15_-00612009540865_0001_Gaussian_00001.m
| A	testsuite/data/svm/MPDSVM_1_00001_30_15_0001_Gaussian.m
| A	testsuite/data/svm/MPDSVM_1_00001_30_15_001_Gaussian.m
| D	testsuite/data/svm/MPDSVM_1_0017_15_00_001_Gaussian_1e-05.m
| D	testsuite/data/svm/MPDSVM_1_023_15_00_001_Gaussian_1e-05.m
| D	testsuite/data/svm/MPDSVM_1_15_15_0548913634936_001_Gaussian_1e-05.m
| A	testsuite/data/svm/MPDSVM_1_1e-05_0017_15_001_Gaussian.m
| A	testsuite/data/svm/MPDSVM_1_1e-05_023_15_001_Gaussian.m
| A	testsuite/data/svm/MPDSVM_1_1e-05_15_15_001_Gaussian.m
| A	testsuite/data/svm/MPDSVM_1_1e-05_30_15_001_Gaussian.m
| D	testsuite/data/svm/MPDSVM_1_30_15_-00612009540865_0001_Gaussian_00001.m
| D	testsuite/data/svm/MPDSVM_1_30_15_-00612009540865_001_Gaussian_00001.m
| D	testsuite/data/svm/MPDSVM_1_30_15_-00613177133305_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_16_00001_15_30_0001_Linear.m
| A	testsuite/data/svm/SVMLight_16_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/SVMLight_16_15_30_-508686938491_0001_Linear_00001.m
| D	testsuite/data/svm/SVMLight_16_20_30_60_DNA_00773054561448_0001_WeightedDegreePositionString_00001.m
| A	testsuite/data/svm/SVMLight_16_2_60_0_0001_30_CommUlongString_False_00001_3_False_DNA.m
| A	testsuite/data/svm/SVMLight_16_2_60_0_0001_30_CommWordString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_16_2_60_0_0001_CommUlongString_False_00001_3_False_30_DNA_00755327993845.m
| D	testsuite/data/svm/SVMLight_16_2_60_0_0001_CommWordString_False_00001_3_False_30_DNA_-0303223143965.m
| D	testsuite/data/svm/SVMLight_16_30_15_-00613133743997_0001_Gaussian_00001.m
| A	testsuite/data/svm/SVMLight_16_60_0001_30_0_WeightedDegreeString_00001_3_DNA.m
| A	testsuite/data/svm/SVMLight_16_60_0001_30_WeightedDegreePositionString_00001_20_DNA.m
| D	testsuite/data/svm/SVMLight_16_60_0001_WeightedDegreeString_0_00001_3_30_DNA_00943158120528.m
| A	testsuite/data/svm/SVMLight_1_00001_15_30_0001_Linear.m
| A	testsuite/data/svm/SVMLight_1_00001_15_30_001_Linear.m
| A	testsuite/data/svm/SVMLight_1_00001_30_15_0001_Gaussian.m
| A	testsuite/data/svm/SVMLight_1_00001_30_15_001_Gaussian.m
| D	testsuite/data/svm/SVMLight_1_0017_15_0994887715902_001_Gaussian_1e-05.m
| D	testsuite/data/svm/SVMLight_1_023_15_0930833803377_001_Gaussian_1e-05.m
| D	testsuite/data/svm/SVMLight_1_15_0017_0966278487501_001_Linear_1e-05.m
| D	testsuite/data/svm/SVMLight_1_15_023_0543767772084_001_Linear_1e-05.m
| D	testsuite/data/svm/SVMLight_1_15_15_-13265884307_001_Linear_1e-05.m
| D	testsuite/data/svm/SVMLight_1_15_15_0548916108981_001_Gaussian_1e-05.m
| D	testsuite/data/svm/SVMLight_1_15_30_-508686938491_0001_Linear_00001.m
| D	testsuite/data/svm/SVMLight_1_15_30_-508686938491_001_Linear_00001.m
| D	testsuite/data/svm/SVMLight_1_15_30_-508686938491_001_Linear_1e-05.m
| A	testsuite/data/svm/SVMLight_1_1e-05_0017_15_001_Gaussian.m
| A	testsuite/data/svm/SVMLight_1_1e-05_023_15_001_Gaussian.m
| A	testsuite/data/svm/SVMLight_1_1e-05_15_0017_001_Linear.m
| A	testsuite/data/svm/SVMLight_1_1e-05_15_023_001_Linear.m
| A	testsuite/data/svm/SVMLight_1_1e-05_15_15_001_Gaussian.m
| A	testsuite/data/svm/SVMLight_1_1e-05_15_15_001_Linear.m
| A	testsuite/data/svm/SVMLight_1_1e-05_15_30_001_Linear.m
| A	testsuite/data/svm/SVMLight_1_1e-05_30_15_001_Gaussian.m
| D	testsuite/data/svm/SVMLight_1_20_0017_60_DNA_0986524824699_001_WeightedDegreePositionString_1e-05.m
| D	testsuite/data/svm/SVMLight_1_20_023_60_DNA_081768879782_001_WeightedDegreePositionString_1e-05.m
| D	testsuite/data/svm/SVMLight_1_20_15_60_DNA_00773054561448_001_WeightedDegreePositionString_1e-05.m
| D	testsuite/data/svm/SVMLight_1_20_30_60_DNA_00773054561448_0001_WeightedDegreePositionString_00001.m
| D	testsuite/data/svm/SVMLight_1_20_30_60_DNA_00773054561448_001_WeightedDegreePositionString_00001.m
| D	testsuite/data/svm/SVMLight_1_20_30_60_DNA_00773054561448_001_WeightedDegreePositionString_1e-05.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_0001_30_CommUlongString_False_00001_3_False_DNA.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_0001_30_CommWordString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_0001_CommUlongString_False_00001_3_False_30_DNA_00755327993845.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_0001_CommWordString_False_00001_3_False_30_DNA_-0303223143965.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_0017_CommUlongString_False_1e-05_3_False_DNA.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_0017_CommWordString_False_1e-05_3_False_DNA.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_023_CommUlongString_False_1e-05_3_False_DNA.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_023_CommWordString_False_1e-05_3_False_DNA.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_15_CommUlongString_False_1e-05_3_False_DNA.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_15_CommWordString_False_1e-05_3_False_DNA.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_30_CommUlongString_False_00001_3_False_DNA.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_30_CommUlongString_False_1e-05_3_False_DNA.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_30_CommWordString_False_00001_3_False_DNA.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_30_CommWordString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_00001_3_False_30_DNA_00755327993845.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_1e-05_3_False_0017_DNA_0998948043654.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_1e-05_3_False_023_DNA_0985886874191.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_1e-05_3_False_15_DNA_0906689237786.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_1e-05_3_False_30_DNA_00755327993845.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_00001_3_False_30_DNA_-0303223143965.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_1e-05_3_False_0017_DNA_-0992443037478.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_1e-05_3_False_023_DNA_-0897758742345.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_1e-05_3_False_15_DNA_-0333209189209.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_1e-05_3_False_30_DNA_-0303223143965.m
| D	testsuite/data/svm/SVMLight_1_30_15_-00613133743997_0001_Gaussian_00001.m
| D	testsuite/data/svm/SVMLight_1_30_15_-00613133743997_001_Gaussian_00001.m
| D	testsuite/data/svm/SVMLight_1_30_15_-00613133743997_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_60_0001_30_0_WeightedDegreeString_00001_3_DNA.m
| A	testsuite/data/svm/SVMLight_1_60_0001_30_WeightedDegreePositionString_00001_20_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_0001_WeightedDegreeString_0_00001_3_30_DNA_00943158120528.m
| A	testsuite/data/svm/SVMLight_1_60_001_0017_0_WeightedDegreeString_1e-05_3_DNA.m
| A	testsuite/data/svm/SVMLight_1_60_001_0017_WeightedDegreePositionString_1e-05_20_DNA.m
| A	testsuite/data/svm/SVMLight_1_60_001_023_0_WeightedDegreeString_1e-05_3_DNA.m
| A	testsuite/data/svm/SVMLight_1_60_001_023_WeightedDegreePositionString_1e-05_20_DNA.m
| A	testsuite/data/svm/SVMLight_1_60_001_15_0_WeightedDegreeString_1e-05_3_DNA.m
| A	testsuite/data/svm/SVMLight_1_60_001_15_WeightedDegreePositionString_1e-05_20_DNA.m
| A	testsuite/data/svm/SVMLight_1_60_001_30_0_WeightedDegreeString_00001_3_DNA.m
| A	testsuite/data/svm/SVMLight_1_60_001_30_0_WeightedDegreeString_1e-05_3_DNA.m
| A	testsuite/data/svm/SVMLight_1_60_001_30_WeightedDegreePositionString_00001_20_DNA.m
| A	testsuite/data/svm/SVMLight_1_60_001_30_WeightedDegreePositionString_1e-05_20_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_00001_3_30_DNA_00943158120528.m
| D	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_0017_DNA_0988417746545.m
| D	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_023_DNA_0843298911743.m
| D	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_15_DNA_0102767270065.m
| D	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_30_DNA_00943158120528.m
| A	testsuite/data/svm/SVMLin_16_00001_30.m
| A	testsuite/data/svm/SVMLin_1_00001_30.m
| A	testsuite/data/svm/SVMLin_1_1e-05_0017.m
| A	testsuite/data/svm/SVMLin_1_1e-05_023.m
| A	testsuite/data/svm/SVMLin_1_1e-05_15.m
| A	testsuite/data/svm/SVMLin_1_1e-05_30.m
| A	testsuite/data/svm/SVMOcas_16_00001_30.m
| A	testsuite/data/svm/SVMOcas_1_00001_30.m
| A	testsuite/data/svm/SVMOcas_1_1e-05_0017.m
| A	testsuite/data/svm/SVMOcas_1_1e-05_023.m
| A	testsuite/data/svm/SVMOcas_1_1e-05_15.m
| A	testsuite/data/svm/SVMOcas_1_1e-05_30.m
| M	testsuite/generator/fileop.py
| M	testsuite/generator/svm.py
| M	testsuite/generator/svmlist.py
|  
* commit dc5b83c3738fbac234cb559707f73f600e660ac0
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Dec 5 16:27:27 2007 +0000
| 
|     Added tests for LibSVM[Multi|One]class and GMNPSVM. Something seems to be
|     wrong, though.
|     Fixed serious error in tester for SVMs.
| 
| M	python-modular/testcases/svm.py
| M	src/classifier/svm/MultiClassSVM.cpp
| A	testsuite/data/svm/GMNPSVM_16_30_15_00_0001_Gaussian_00001.m
| A	testsuite/data/svm/GMNPSVM_1_0017_15_00_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GMNPSVM_1_023_15_00_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GMNPSVM_1_15_15_00_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GMNPSVM_1_30_15_00_0001_Gaussian_00001.m
| A	testsuite/data/svm/GMNPSVM_1_30_15_00_001_Gaussian_00001.m
| A	testsuite/data/svm/GMNPSVM_1_30_15_00_001_Gaussian_1e-05.m
| D	testsuite/data/svm/GPBTSVM_16_15_30_-0821989185185_0001_Linear_00001.m
| A	testsuite/data/svm/GPBTSVM_16_15_30_-508687312495_0001_Linear_00001.m
| A	testsuite/data/svm/GPBTSVM_16_20_30_60_DNA_00773056062963_0001_WeightedDegreePositionString_00001.m
| D	testsuite/data/svm/GPBTSVM_16_20_30_60_DNA_0246910045785_0001_WeightedDegreePositionString_00001.m
| A	testsuite/data/svm/GPBTSVM_16_2_60_0_0001_CommUlongString_False_00001_3_False_30_DNA_0887334266458.m
| D	testsuite/data/svm/GPBTSVM_16_2_60_0_0001_CommUlongString_False_00001_3_False_30_DNA_0921516131876.m
| A	testsuite/data/svm/GPBTSVM_16_2_60_0_0001_CommWordString_False_00001_3_False_30_DNA_-0303225609186.m
| D	testsuite/data/svm/GPBTSVM_16_2_60_0_0001_CommWordString_False_00001_3_False_30_DNA_0692485803483.m
| A	testsuite/data/svm/GPBTSVM_16_30_15_-00613100758013_0001_Gaussian_00001.m
| D	testsuite/data/svm/GPBTSVM_16_30_15_143346292372_0001_Gaussian_00001.m
| D	testsuite/data/svm/GPBTSVM_16_60_0001_WeightedDegreeString_0_00001_3_30_DNA_-0444390887792.m
| A	testsuite/data/svm/GPBTSVM_16_60_0001_WeightedDegreeString_0_00001_3_30_DNA_00943187331216.m
| D	testsuite/data/svm/GPBTSVM_1_0017_15_-0991745920319_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_0017_15_0994887705366_001_Gaussian_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_023_15_0818477884792_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_023_15_0930833660838_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_15_0017_0966278485944_001_Linear_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_15_0017_099608009537_001_Linear_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_15_023_-101102248885_001_Linear_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_15_023_0543767751007_001_Linear_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_15_15_-0417154418981_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_15_15_-132658839231_001_Linear_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_15_15_00258979118437_001_Linear_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_15_15_0548915753829_001_Gaussian_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_15_30_-065157463662_001_Linear_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_15_30_-22505370471_0001_Linear_00001.m
| A	testsuite/data/svm/GPBTSVM_1_15_30_-508687201949_001_Linear_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_15_30_-508687312495_0001_Linear_00001.m
| A	testsuite/data/svm/GPBTSVM_1_15_30_-508687312495_001_Linear_00001.m
| D	testsuite/data/svm/GPBTSVM_1_15_30_338433913605_001_Linear_00001.m
| D	testsuite/data/svm/GPBTSVM_1_20_0017_60_DNA_-0986597573189_001_WeightedDegreePositionString_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_20_0017_60_DNA_0986524825149_001_WeightedDegreePositionString_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_20_023_60_DNA_0817688815924_001_WeightedDegreePositionString_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_20_023_60_DNA_0879328418115_001_WeightedDegreePositionString_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_20_15_60_DNA_00773056062963_001_WeightedDegreePositionString_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_20_15_60_DNA_0251288416885_001_WeightedDegreePositionString_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_20_30_60_DNA_-0274893902444_001_WeightedDegreePositionString_00001.m
| D	testsuite/data/svm/GPBTSVM_1_20_30_60_DNA_-0455284596555_0001_WeightedDegreePositionString_00001.m
| A	testsuite/data/svm/GPBTSVM_1_20_30_60_DNA_00773056062963_0001_WeightedDegreePositionString_00001.m
| A	testsuite/data/svm/GPBTSVM_1_20_30_60_DNA_00773056062963_001_WeightedDegreePositionString_00001.m
| A	testsuite/data/svm/GPBTSVM_1_20_30_60_DNA_00773056062963_001_WeightedDegreePositionString_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_20_30_60_DNA_0287137470224_001_WeightedDegreePositionString_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_0001_CommUlongString_False_00001_3_False_30_DNA_-0979802682552.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_0001_CommUlongString_False_00001_3_False_30_DNA_0887334266458.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_0001_CommWordString_False_00001_3_False_30_DNA_-00935648601231.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_0001_CommWordString_False_00001_3_False_30_DNA_-0303225609186.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_00001_3_False_30_DNA_-0957519616218.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_00001_3_False_30_DNA_0887334266458.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_1e-05_3_False_0017_DNA_0998303655915.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_1e-05_3_False_0017_DNA_0999427960851.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_1e-05_3_False_023_DNA_0977049462379.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_1e-05_3_False_023_DNA_0988090155292.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_1e-05_3_False_15_DNA_-0910865417906.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_1e-05_3_False_15_DNA_0887334331162.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_1e-05_3_False_30_DNA_0887334331162.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_1e-05_3_False_30_DNA_106026905221.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_00001_3_False_30_DNA_-0019598758374.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_00001_3_False_30_DNA_-0303225609186.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_1e-05_3_False_0017_DNA_-0992443037178.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_1e-05_3_False_0017_DNA_-0993375065259.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_1e-05_3_False_023_DNA_-0897758738285.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_1e-05_3_False_023_DNA_0931498798307.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_1e-05_3_False_15_DNA_-0333209053609.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_1e-05_3_False_15_DNA_-0651825725233.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_1e-05_3_False_30_DNA_-0303223251273.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_1e-05_3_False_30_DNA_00599254479992.m
| A	testsuite/data/svm/GPBTSVM_1_30_15_-00613100758013_0001_Gaussian_00001.m
| A	testsuite/data/svm/GPBTSVM_1_30_15_-00613100758013_001_Gaussian_00001.m
| A	testsuite/data/svm/GPBTSVM_1_30_15_-00613132524843_001_Gaussian_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_30_15_-0484590141478_0001_Gaussian_00001.m
| D	testsuite/data/svm/GPBTSVM_1_30_15_0261977403774_001_Gaussian_00001.m
| D	testsuite/data/svm/GPBTSVM_1_30_15_105204219268_001_Gaussian_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_60_0001_WeightedDegreeString_0_00001_3_30_DNA_-0831897511827.m
| A	testsuite/data/svm/GPBTSVM_1_60_0001_WeightedDegreeString_0_00001_3_30_DNA_00943187331216.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_00001_3_30_DNA_00688774205661.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_00001_3_30_DNA_00943187331216.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_0017_DNA_-0987462969743.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_0017_DNA_0988417792297.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_023_DNA_0827255626261.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_023_DNA_0843299538078.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_15_DNA_0102767939962.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_15_DNA_0256947138336.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_30_DNA_-0257746371493.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_30_DNA_00943162018287.m
| A	testsuite/data/svm/LibSVMMultiClass_16_30_15_00_0001_Gaussian_00001.m
| A	testsuite/data/svm/LibSVMMultiClass_1_0017_15_00_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVMMultiClass_1_023_15_00_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVMMultiClass_1_15_15_00_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVMMultiClass_1_30_15_00_0001_Gaussian_00001.m
| A	testsuite/data/svm/LibSVMMultiClass_1_30_15_00_001_Gaussian_00001.m
| A	testsuite/data/svm/LibSVMMultiClass_1_30_15_00_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVM_16_30_15_-00613016037411_0001_Gaussian_00001.m
| D	testsuite/data/svm/LibSVM_16_30_15_0366981410606_0001_Gaussian_00001.m
| D	testsuite/data/svm/LibSVM_1_0017_15_-0998849870364_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVM_1_0017_15_0994889338985_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVM_1_023_15_0930835635432_001_Gaussian_1e-05.m
| D	testsuite/data/svm/LibSVM_1_023_15_09326726494_001_Gaussian_1e-05.m
| D	testsuite/data/svm/LibSVM_1_15_15_00768127665445_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVM_1_15_15_0548916216423_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVM_1_30_15_-00613016037411_0001_Gaussian_00001.m
| A	testsuite/data/svm/LibSVM_1_30_15_-00613016037411_001_Gaussian_00001.m
| A	testsuite/data/svm/LibSVM_1_30_15_-00613118313148_001_Gaussian_1e-05.m
| D	testsuite/data/svm/LibSVM_1_30_15_-0607275480722_001_Gaussian_1e-05.m
| D	testsuite/data/svm/LibSVM_1_30_15_00397808780463_0001_Gaussian_00001.m
| D	testsuite/data/svm/LibSVM_1_30_15_142449738409_001_Gaussian_00001.m
| A	testsuite/data/svm/MPDSVM_16_30_15_-00612009540865_0001_Gaussian_00001.m
| D	testsuite/data/svm/MPDSVM_16_30_15_-0246062468411_0001_Gaussian_00001.m
| M	testsuite/data/svm/MPDSVM_1_0017_15_00_001_Gaussian_1e-05.m
| M	testsuite/data/svm/MPDSVM_1_023_15_00_001_Gaussian_1e-05.m
| D	testsuite/data/svm/MPDSVM_1_15_15_00275986246364_001_Gaussian_1e-05.m
| A	testsuite/data/svm/MPDSVM_1_15_15_0548913634936_001_Gaussian_1e-05.m
| A	testsuite/data/svm/MPDSVM_1_30_15_-00612009540865_0001_Gaussian_00001.m
| A	testsuite/data/svm/MPDSVM_1_30_15_-00612009540865_001_Gaussian_00001.m
| A	testsuite/data/svm/MPDSVM_1_30_15_-00613177133305_001_Gaussian_1e-05.m
| D	testsuite/data/svm/MPDSVM_1_30_15_-0169585810765_001_Gaussian_00001.m
| D	testsuite/data/svm/MPDSVM_1_30_15_-0270443430609_001_Gaussian_1e-05.m
| D	testsuite/data/svm/MPDSVM_1_30_15_-0446534051325_0001_Gaussian_00001.m
| D	testsuite/data/svm/SVMLight_16_15_30_-161565078946_0001_Linear_00001.m
| A	testsuite/data/svm/SVMLight_16_15_30_-508686938491_0001_Linear_00001.m
| D	testsuite/data/svm/SVMLight_16_20_30_60_DNA_-00869184583409_0001_WeightedDegreePositionString_00001.m
| A	testsuite/data/svm/SVMLight_16_20_30_60_DNA_00773054561448_0001_WeightedDegreePositionString_00001.m
| D	testsuite/data/svm/SVMLight_16_2_60_0_0001_CommUlongString_False_00001_3_False_30_DNA_-0793381114824.m
| A	testsuite/data/svm/SVMLight_16_2_60_0_0001_CommUlongString_False_00001_3_False_30_DNA_00755327993845.m
| D	testsuite/data/svm/SVMLight_16_2_60_0_0001_CommWordString_False_00001_3_False_30_DNA_-0171196497471.m
| A	testsuite/data/svm/SVMLight_16_2_60_0_0001_CommWordString_False_00001_3_False_30_DNA_-0303223143965.m
| A	testsuite/data/svm/SVMLight_16_30_15_-00613133743997_0001_Gaussian_00001.m
| D	testsuite/data/svm/SVMLight_16_30_15_-0151559609532_0001_Gaussian_00001.m
| D	testsuite/data/svm/SVMLight_16_60_0001_WeightedDegreeString_0_00001_3_30_DNA_00823202476202.m
| A	testsuite/data/svm/SVMLight_16_60_0001_WeightedDegreeString_0_00001_3_30_DNA_00943158120528.m
| D	testsuite/data/svm/SVMLight_1_023_15_0772013875341_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_023_15_0930833803377_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_15_0017_0966278487501_001_Linear_1e-05.m
| D	testsuite/data/svm/SVMLight_1_15_0017_0987963299797_001_Linear_1e-05.m
| D	testsuite/data/svm/SVMLight_1_15_023_-0771020268837_001_Linear_1e-05.m
| A	testsuite/data/svm/SVMLight_1_15_023_0543767772084_001_Linear_1e-05.m
| A	testsuite/data/svm/SVMLight_1_15_15_-13265884307_001_Linear_1e-05.m
| D	testsuite/data/svm/SVMLight_1_15_15_0129979727806_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_15_15_0548916108981_001_Gaussian_1e-05.m
| D	testsuite/data/svm/SVMLight_1_15_15_0658655872718_001_Linear_1e-05.m
| D	testsuite/data/svm/SVMLight_1_15_30_-0473459347507_001_Linear_1e-05.m
| A	testsuite/data/svm/SVMLight_1_15_30_-508686938491_0001_Linear_00001.m
| A	testsuite/data/svm/SVMLight_1_15_30_-508686938491_001_Linear_00001.m
| A	testsuite/data/svm/SVMLight_1_15_30_-508686938491_001_Linear_1e-05.m
| D	testsuite/data/svm/SVMLight_1_15_30_-521501361299_001_Linear_00001.m
| D	testsuite/data/svm/SVMLight_1_15_30_228357034322_0001_Linear_00001.m
| A	testsuite/data/svm/SVMLight_1_20_0017_60_DNA_0986524824699_001_WeightedDegreePositionString_1e-05.m
| D	testsuite/data/svm/SVMLight_1_20_0017_60_DNA_0986853631926_001_WeightedDegreePositionString_1e-05.m
| A	testsuite/data/svm/SVMLight_1_20_023_60_DNA_081768879782_001_WeightedDegreePositionString_1e-05.m
| D	testsuite/data/svm/SVMLight_1_20_023_60_DNA_0878874694523_001_WeightedDegreePositionString_1e-05.m
| A	testsuite/data/svm/SVMLight_1_20_15_60_DNA_00773054561448_001_WeightedDegreePositionString_1e-05.m
| D	testsuite/data/svm/SVMLight_1_20_15_60_DNA_069369756601_001_WeightedDegreePositionString_1e-05.m
| D	testsuite/data/svm/SVMLight_1_20_30_60_DNA_-0251060935602_001_WeightedDegreePositionString_00001.m
| A	testsuite/data/svm/SVMLight_1_20_30_60_DNA_00773054561448_0001_WeightedDegreePositionString_00001.m
| A	testsuite/data/svm/SVMLight_1_20_30_60_DNA_00773054561448_001_WeightedDegreePositionString_00001.m
| A	testsuite/data/svm/SVMLight_1_20_30_60_DNA_00773054561448_001_WeightedDegreePositionString_1e-05.m
| D	testsuite/data/svm/SVMLight_1_20_30_60_DNA_00900911532605_001_WeightedDegreePositionString_1e-05.m
| D	testsuite/data/svm/SVMLight_1_20_30_60_DNA_0102176441694_0001_WeightedDegreePositionString_00001.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_0001_CommUlongString_False_00001_3_False_30_DNA_-0820755510649.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_0001_CommUlongString_False_00001_3_False_30_DNA_00755327993845.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_0001_CommWordString_False_00001_3_False_30_DNA_-00586362747545.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_0001_CommWordString_False_00001_3_False_30_DNA_-0303223143965.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_00001_3_False_30_DNA_00755327993845.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_00001_3_False_30_DNA_00781655170826.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_1e-05_3_False_0017_DNA_-100004058358.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_1e-05_3_False_0017_DNA_0998948043654.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_1e-05_3_False_023_DNA_0985886874191.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_1e-05_3_False_023_DNA_101134267787.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_1e-05_3_False_15_DNA_0906689237786.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_1e-05_3_False_15_DNA_109076167274.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_1e-05_3_False_30_DNA_00755327993845.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_1e-05_3_False_30_DNA_0404282354121.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_00001_3_False_30_DNA_-0303223143965.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_00001_3_False_30_DNA_-0304776480432.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_1e-05_3_False_0017_DNA_-0992443037478.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_1e-05_3_False_0017_DNA_-0998450395842.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_1e-05_3_False_023_DNA_-086437759149.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_1e-05_3_False_023_DNA_-0897758742345.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_1e-05_3_False_15_DNA_-0278906532595.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_1e-05_3_False_15_DNA_-0333209189209.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_1e-05_3_False_30_DNA_-0303223143965.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_1e-05_3_False_30_DNA_000696653044183.m
| A	testsuite/data/svm/SVMLight_1_30_15_-00613133743997_0001_Gaussian_00001.m
| A	testsuite/data/svm/SVMLight_1_30_15_-00613133743997_001_Gaussian_00001.m
| A	testsuite/data/svm/SVMLight_1_30_15_-00613133743997_001_Gaussian_1e-05.m
| D	testsuite/data/svm/SVMLight_1_30_15_0374551614297_0001_Gaussian_00001.m
| D	testsuite/data/svm/SVMLight_1_30_15_0382293280572_001_Gaussian_1e-05.m
| D	testsuite/data/svm/SVMLight_1_30_15_0829762948051_001_Gaussian_00001.m
| A	testsuite/data/svm/SVMLight_1_60_0001_WeightedDegreeString_0_00001_3_30_DNA_00943158120528.m
| D	testsuite/data/svm/SVMLight_1_60_0001_WeightedDegreeString_0_00001_3_30_DNA_0431048148373.m
| A	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_00001_3_30_DNA_00943158120528.m
| D	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_00001_3_30_DNA_0107756130204.m
| D	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_0017_DNA_-0985710347358.m
| A	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_0017_DNA_0988417746545.m
| D	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_023_DNA_-0842079863084.m
| A	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_023_DNA_0843298911743.m
| A	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_15_DNA_0102767270065.m
| D	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_15_DNA_0519380955627.m
| A	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_30_DNA_00943158120528.m
| D	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_30_DNA_048071442276.m
| M	testsuite/generator/svm.py
| M	testsuite/generator/svmlist.py
|  
* commit 40b36533f91ce270c0282a63155a459b7545cc71
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 3 16:36:06 2007 +0000
| 
|     Added tests for SVM_light/GPBT with kernels Linear/WD/WDS/Comm*.
|     Modified initialisation of shifts in WDS a bit (and hopefully did not
|     break it).
| 
| M	python-modular/testcases/svm.py
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| A	testsuite/data/svm/GPBTSVM_16_15_30_-0821989185185_0001_Linear_00001.m
| A	testsuite/data/svm/GPBTSVM_16_20_30_60_DNA_0246910045785_0001_WeightedDegreePositionString_00001.m
| A	testsuite/data/svm/GPBTSVM_16_2_60_0_0001_CommUlongString_False_00001_3_False_30_DNA_0921516131876.m
| A	testsuite/data/svm/GPBTSVM_16_2_60_0_0001_CommWordString_False_00001_3_False_30_DNA_0692485803483.m
| D	testsuite/data/svm/GPBTSVM_16_30_15_-044654010505_0001_Gaussian_00001.m
| A	testsuite/data/svm/GPBTSVM_16_30_15_143346292372_0001_Gaussian_00001.m
| A	testsuite/data/svm/GPBTSVM_16_60_0001_WeightedDegreeString_0_00001_3_30_DNA_-0444390887792.m
| D	testsuite/data/svm/GPBTSVM_1_0017_15_-0982940693452_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_0017_15_-0991745920319_001_Gaussian_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_023_15_-0878671861347_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_023_15_0818477884792_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_15_0017_099608009537_001_Linear_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_15_023_-101102248885_001_Linear_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_15_15_-0164682491082_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_15_15_-0417154418981_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_15_15_00258979118437_001_Linear_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_15_30_-065157463662_001_Linear_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_15_30_-22505370471_0001_Linear_00001.m
| A	testsuite/data/svm/GPBTSVM_1_15_30_338433913605_001_Linear_00001.m
| A	testsuite/data/svm/GPBTSVM_1_20_0017_60_DNA_-0986597573189_001_WeightedDegreePositionString_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_20_023_60_DNA_0879328418115_001_WeightedDegreePositionString_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_20_15_60_DNA_0251288416885_001_WeightedDegreePositionString_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_20_30_60_DNA_-0274893902444_001_WeightedDegreePositionString_00001.m
| A	testsuite/data/svm/GPBTSVM_1_20_30_60_DNA_-0455284596555_0001_WeightedDegreePositionString_00001.m
| A	testsuite/data/svm/GPBTSVM_1_20_30_60_DNA_0287137470224_001_WeightedDegreePositionString_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_0001_CommUlongString_False_00001_3_False_30_DNA_-0979802682552.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_0001_CommWordString_False_00001_3_False_30_DNA_-00935648601231.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_00001_3_False_30_DNA_-0957519616218.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_1e-05_3_False_0017_DNA_0999427960851.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_1e-05_3_False_023_DNA_0988090155292.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_1e-05_3_False_15_DNA_-0910865417906.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_1e-05_3_False_30_DNA_106026905221.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_00001_3_False_30_DNA_-0019598758374.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_1e-05_3_False_0017_DNA_-0993375065259.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_1e-05_3_False_023_DNA_0931498798307.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_1e-05_3_False_15_DNA_-0651825725233.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_1e-05_3_False_30_DNA_00599254479992.m
| D	testsuite/data/svm/GPBTSVM_1_30_15_-013216554388_0001_Gaussian_00001.m
| A	testsuite/data/svm/GPBTSVM_1_30_15_-0484590141478_0001_Gaussian_00001.m
| D	testsuite/data/svm/GPBTSVM_1_30_15_017611158143_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_30_15_105204219268_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_60_0001_WeightedDegreeString_0_00001_3_30_DNA_-0831897511827.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_00001_3_30_DNA_00688774205661.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_0017_DNA_-0987462969743.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_023_DNA_0827255626261.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_15_DNA_0256947138336.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_30_DNA_-0257746371493.m
| D	testsuite/data/svm/LibSVM_16_30_15_-0169960109781_0001_Gaussian_00001.m
| A	testsuite/data/svm/LibSVM_16_30_15_0366981410606_0001_Gaussian_00001.m
| A	testsuite/data/svm/LibSVM_1_0017_15_-0998849870364_001_Gaussian_1e-05.m
| D	testsuite/data/svm/LibSVM_1_0017_15_0983148282468_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVM_1_023_15_09326726494_001_Gaussian_1e-05.m
| D	testsuite/data/svm/LibSVM_1_023_15_0960911423541_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVM_1_30_15_-0607275480722_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVM_1_30_15_00397808780463_0001_Gaussian_00001.m
| D	testsuite/data/svm/LibSVM_1_30_15_0367000497093_001_Gaussian_1e-05.m
| D	testsuite/data/svm/LibSVM_1_30_15_0540534077721_0001_Gaussian_00001.m
| D	testsuite/data/svm/LibSVM_1_30_15_105203502136_001_Gaussian_00001.m
| A	testsuite/data/svm/LibSVM_1_30_15_142449738409_001_Gaussian_00001.m
| M	testsuite/data/svm/MPDSVM_1_0017_15_00_001_Gaussian_1e-05.m
| M	testsuite/data/svm/MPDSVM_1_023_15_00_001_Gaussian_1e-05.m
| A	testsuite/data/svm/MPDSVM_1_15_15_00275986246364_001_Gaussian_1e-05.m
| D	testsuite/data/svm/MPDSVM_1_15_15_116103114629_001_Gaussian_1e-05.m
| D	testsuite/data/svm/MPDSVM_1_30_15_-00404290801427_001_Gaussian_1e-05.m
| D	testsuite/data/svm/MPDSVM_1_30_15_-0132174299938_0001_Gaussian_00001.m
| A	testsuite/data/svm/MPDSVM_1_30_15_-0169585810765_001_Gaussian_00001.m
| A	testsuite/data/svm/MPDSVM_1_30_15_-0270443430609_001_Gaussian_1e-05.m
| A	testsuite/data/svm/MPDSVM_1_30_15_-0446534051325_0001_Gaussian_00001.m
| D	testsuite/data/svm/MPDSVM_1_30_15_-0484445849989_001_Gaussian_00001.m
| A	testsuite/data/svm/SVMLight_16_15_30_-161565078946_0001_Linear_00001.m
| A	testsuite/data/svm/SVMLight_16_20_30_60_DNA_-00869184583409_0001_WeightedDegreePositionString_00001.m
| A	testsuite/data/svm/SVMLight_16_2_60_0_0001_CommUlongString_False_00001_3_False_30_DNA_-0793381114824.m
| A	testsuite/data/svm/SVMLight_16_2_60_0_0001_CommWordString_False_00001_3_False_30_DNA_-0171196497471.m
| A	testsuite/data/svm/SVMLight_16_30_15_-0151559609532_0001_Gaussian_00001.m
| D	testsuite/data/svm/SVMLight_16_30_15_-027044286291_0001_Gaussian_00001.m
| A	testsuite/data/svm/SVMLight_16_60_0001_WeightedDegreeString_0_00001_3_30_DNA_00823202476202.m
| M	testsuite/data/svm/SVMLight_1_0017_15_0994887715902_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_023_15_0772013875341_001_Gaussian_1e-05.m
| D	testsuite/data/svm/SVMLight_1_023_15_0917290490851_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_15_0017_0987963299797_001_Linear_1e-05.m
| A	testsuite/data/svm/SVMLight_1_15_023_-0771020268837_001_Linear_1e-05.m
| A	testsuite/data/svm/SVMLight_1_15_15_0129979727806_001_Gaussian_1e-05.m
| D	testsuite/data/svm/SVMLight_1_15_15_0560907134726_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_15_15_0658655872718_001_Linear_1e-05.m
| A	testsuite/data/svm/SVMLight_1_15_30_-0473459347507_001_Linear_1e-05.m
| A	testsuite/data/svm/SVMLight_1_15_30_-521501361299_001_Linear_00001.m
| A	testsuite/data/svm/SVMLight_1_15_30_228357034322_0001_Linear_00001.m
| A	testsuite/data/svm/SVMLight_1_20_0017_60_DNA_0986853631926_001_WeightedDegreePositionString_1e-05.m
| A	testsuite/data/svm/SVMLight_1_20_023_60_DNA_0878874694523_001_WeightedDegreePositionString_1e-05.m
| A	testsuite/data/svm/SVMLight_1_20_15_60_DNA_069369756601_001_WeightedDegreePositionString_1e-05.m
| A	testsuite/data/svm/SVMLight_1_20_30_60_DNA_-0251060935602_001_WeightedDegreePositionString_00001.m
| A	testsuite/data/svm/SVMLight_1_20_30_60_DNA_00900911532605_001_WeightedDegreePositionString_1e-05.m
| A	testsuite/data/svm/SVMLight_1_20_30_60_DNA_0102176441694_0001_WeightedDegreePositionString_00001.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_0001_CommUlongString_False_00001_3_False_30_DNA_-0820755510649.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_0001_CommWordString_False_00001_3_False_30_DNA_-00586362747545.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_00001_3_False_30_DNA_00781655170826.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_1e-05_3_False_0017_DNA_-100004058358.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_1e-05_3_False_023_DNA_101134267787.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_1e-05_3_False_15_DNA_109076167274.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_1e-05_3_False_30_DNA_0404282354121.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_00001_3_False_30_DNA_-0304776480432.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_1e-05_3_False_0017_DNA_-0998450395842.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_1e-05_3_False_023_DNA_-086437759149.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_1e-05_3_False_15_DNA_-0278906532595.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_1e-05_3_False_30_DNA_000696653044183.m
| D	testsuite/data/svm/SVMLight_1_30_15_-00717753971131_001_Gaussian_00001.m
| D	testsuite/data/svm/SVMLight_1_30_15_00397728902548_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_30_15_0374551614297_0001_Gaussian_00001.m
| A	testsuite/data/svm/SVMLight_1_30_15_0382293280572_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_30_15_0829762948051_001_Gaussian_00001.m
| D	testsuite/data/svm/SVMLight_1_30_15_143346298875_0001_Gaussian_00001.m
| A	testsuite/data/svm/SVMLight_1_60_0001_WeightedDegreeString_0_00001_3_30_DNA_0431048148373.m
| A	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_00001_3_30_DNA_0107756130204.m
| A	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_0017_DNA_-0985710347358.m
| A	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_023_DNA_-0842079863084.m
| A	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_15_DNA_0519380955627.m
| A	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_30_DNA_048071442276.m
| M	testsuite/generator/svm.py
| M	testsuite/generator/svmlist.py
|  
* commit 472126d80850b5c8660c3d9f2fe68409629479da
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 3 14:20:33 2007 +0000
| 
|     Included swig interface for MPDSVM in build process and added second
|     constructor to class.
|     Added tests for SMVs GPBTSVM, LibSVM, MPDSVM. Some values for
|     biases/alphas/support vectors seem to be a bit or completely out of bounds;
|     needs a fix.
| 
| M	python-modular/testcases/run.sh
| M	python-modular/testcases/svm.py
| M	src/classifier/Classifier.i
| M	src/classifier/svm/MPD.cpp
| M	src/classifier/svm/MPD.h
| M	src/classifier/svm/MPD.i
| A	testsuite/data/svm/GPBTSVM_16_30_15_-044654010505_0001_Gaussian_00001.m
| A	testsuite/data/svm/GPBTSVM_1_0017_15_-0982940693452_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_023_15_-0878671861347_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_15_15_-0164682491082_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_30_15_-013216554388_0001_Gaussian_00001.m
| A	testsuite/data/svm/GPBTSVM_1_30_15_017611158143_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_30_15_0261977403774_001_Gaussian_00001.m
| A	testsuite/data/svm/LibSVM_16_30_15_-0169960109781_0001_Gaussian_00001.m
| A	testsuite/data/svm/LibSVM_1_0017_15_0983148282468_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVM_1_023_15_0960911423541_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVM_1_15_15_00768127665445_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVM_1_30_15_0367000497093_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVM_1_30_15_0540534077721_0001_Gaussian_00001.m
| A	testsuite/data/svm/LibSVM_1_30_15_105203502136_001_Gaussian_00001.m
| A	testsuite/data/svm/MPDSVM_16_30_15_-0246062468411_0001_Gaussian_00001.m
| A	testsuite/data/svm/MPDSVM_1_0017_15_00_001_Gaussian_1e-05.m
| A	testsuite/data/svm/MPDSVM_1_023_15_00_001_Gaussian_1e-05.m
| A	testsuite/data/svm/MPDSVM_1_15_15_116103114629_001_Gaussian_1e-05.m
| A	testsuite/data/svm/MPDSVM_1_30_15_-00404290801427_001_Gaussian_1e-05.m
| A	testsuite/data/svm/MPDSVM_1_30_15_-0132174299938_0001_Gaussian_00001.m
| A	testsuite/data/svm/MPDSVM_1_30_15_-0484445849989_001_Gaussian_00001.m
| D	testsuite/data/svm/SVMLight_16_30_15_-0151559609532_0001_Gaussian_00001.m
| A	testsuite/data/svm/SVMLight_16_30_15_-027044286291_0001_Gaussian_00001.m
| M	testsuite/data/svm/SVMLight_1_0017_15_0994887715902_001_Gaussian_1e-05.m
| D	testsuite/data/svm/SVMLight_1_023_15_0772013875341_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_023_15_0917290490851_001_Gaussian_1e-05.m
| D	testsuite/data/svm/SVMLight_1_15_15_0129979727806_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_15_15_0560907134726_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_30_15_-00717753971131_001_Gaussian_00001.m
| A	testsuite/data/svm/SVMLight_1_30_15_00397728902548_001_Gaussian_1e-05.m
| D	testsuite/data/svm/SVMLight_1_30_15_0374551614297_0001_Gaussian_00001.m
| D	testsuite/data/svm/SVMLight_1_30_15_0382293280572_001_Gaussian_1e-05.m
| D	testsuite/data/svm/SVMLight_1_30_15_0829762948051_001_Gaussian_00001.m
| A	testsuite/data/svm/SVMLight_1_30_15_143346298875_0001_Gaussian_00001.m
| M	testsuite/generator/svm.py
| A	testsuite/generator/svmlist.py
|  
* commit 03db5a42adfb13ab1995225b2d5eac4b817e71f3
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 3 12:08:28 2007 +0000
| 
|     testsuite:
|     	- Refactored SVM into its own module.
|     	- Got rid of silly plural 's' in file/dir/module names.
| 
| A	python-modular/testcases/distance.py
| D	python-modular/testcases/distances.py
| A	python-modular/testcases/kernel.py
| D	python-modular/testcases/kernels.py
| M	python-modular/testcases/run.sh
| A	python-modular/testcases/svm.py
| M	python-modular/testcases/test.py
| A	testsuite/data/distance/CanberraMetric.m
| A	testsuite/data/distance/CanberraWordDistance_False_60_0_DNA_3.m
| A	testsuite/data/distance/ChebyshewMetric.m
| A	testsuite/data/distance/EuclidianDistance.m
| A	testsuite/data/distance/GeodesicMetric.m
| A	testsuite/data/distance/HammingWordDistance_60_0_False_False_DNA_3.m
| A	testsuite/data/distance/HammingWordDistance_60_0_True_False_DNA_3.m
| A	testsuite/data/distance/JensenMetric.m
| A	testsuite/data/distance/ManhattanMetric.m
| A	testsuite/data/distance/ManhattanWordDistance_False_60_0_DNA_3.m
| A	testsuite/data/distance/MinkowskiMetric_13.m
| A	testsuite/data/distance/SparseEuclidianDistance.m
| D	testsuite/data/distances/CanberraMetric.m
| D	testsuite/data/distances/CanberraWordDistance_False_60_0_DNA_3.m
| D	testsuite/data/distances/ChebyshewMetric.m
| D	testsuite/data/distances/EuclidianDistance.m
| D	testsuite/data/distances/GeodesicMetric.m
| D	testsuite/data/distances/HammingWordDistance_60_0_False_False_DNA_3.m
| D	testsuite/data/distances/HammingWordDistance_60_0_True_False_DNA_3.m
| D	testsuite/data/distances/JensenMetric.m
| D	testsuite/data/distances/ManhattanMetric.m
| D	testsuite/data/distances/ManhattanWordDistance_False_60_0_DNA_3.m
| D	testsuite/data/distances/MinkowskiMetric_13.m
| D	testsuite/data/distances/SparseEuclidianDistance.m
| A	testsuite/data/kernel/AUC_Gaussian_10_15.m
| A	testsuite/data/kernel/Chi2_10_12.m
| A	testsuite/data/kernel/Combined_60_3_LinearString_FixedDegreeString_True_10_DNA_DNA_60_PolyMatchString_60_10_10_3_DNA.m
| A	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| A	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| A	testsuite/data/kernel/Const_230.m
| A	testsuite/data/kernel/Custom_7.m
| A	testsuite/data/kernel/Diag_230.m
| A	testsuite/data/kernel/Distance_CanberraMetric_17.m
| A	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| A	testsuite/data/kernel/GaussianShift_1_13_2.m
| A	testsuite/data/kernel/Gaussian_13.m
| A	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| A	testsuite/data/kernel/LinearString_60_DNA.m
| A	testsuite/data/kernel/LinearWord.m
| A	testsuite/data/kernel/Linear_10.m
| A	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| A	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| A	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| A	testsuite/data/kernel/PolyMatchWord_3_False.m
| A	testsuite/data/kernel/PolyMatchWord_3_True.m
| A	testsuite/data/kernel/Poly_False_3_False.m
| A	testsuite/data/kernel/Poly_False_3_True.m
| A	testsuite/data/kernel/Poly_True_3_False.m
| A	testsuite/data/kernel/Poly_True_3_True.m
| A	testsuite/data/kernel/Sigmoid_05_07_10.m
| A	testsuite/data/kernel/Sigmoid_11_13_10.m
| A	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_DNA_7_5.m
| A	testsuite/data/kernel/SparseGaussian_13.m
| A	testsuite/data/kernel/SparseLinear_10.m
| A	testsuite/data/kernel/SparsePoly_3_True_True_10.m
| A	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| A	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| A	testsuite/data/kernel/WeightedDegreeString_60_20_DNA_0.m
| A	testsuite/data/kernel/WordMatch_3.m
| D	testsuite/data/kernels/AUC_Gaussian_10_15.m
| D	testsuite/data/kernels/Chi2_10_12.m
| D	testsuite/data/kernels/Combined_60_3_LinearString_FixedDegreeString_True_10_DNA_DNA_60_PolyMatchString_60_10_10_3_DNA.m
| D	testsuite/data/kernels/CommUlongString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernels/CommWordString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernels/Const_230.m
| D	testsuite/data/kernels/Custom_7.m
| D	testsuite/data/kernels/Diag_230.m
| D	testsuite/data/kernels/Distance_CanberraMetric_17.m
| D	testsuite/data/kernels/FixedDegreeString_60_3_DNA.m
| D	testsuite/data/kernels/GaussianShift_1_13_2.m
| D	testsuite/data/kernels/Gaussian_13.m
| D	testsuite/data/kernels/LinearByte_60_RAWBYTE.m
| D	testsuite/data/kernels/LinearString_60_DNA.m
| D	testsuite/data/kernels/LinearWord.m
| D	testsuite/data/kernels/Linear_10.m
| D	testsuite/data/kernels/LocalAlignmentString_60_DNA.m
| D	testsuite/data/kernels/PolyMatchString_60_3_False_DNA.m
| D	testsuite/data/kernels/PolyMatchString_60_3_True_DNA.m
| D	testsuite/data/kernels/PolyMatchWord_3_False.m
| D	testsuite/data/kernels/PolyMatchWord_3_True.m
| D	testsuite/data/kernels/Poly_False_3_False.m
| D	testsuite/data/kernels/Poly_False_3_True.m
| D	testsuite/data/kernels/Poly_True_3_False.m
| D	testsuite/data/kernels/Poly_True_3_True.m
| D	testsuite/data/kernels/Sigmoid_05_07_10.m
| D	testsuite/data/kernels/Sigmoid_11_13_10.m
| D	testsuite/data/kernels/SimpleLocalityImprovedString_5_60_DNA_7_5.m
| D	testsuite/data/kernels/SparseGaussian_13.m
| D	testsuite/data/kernels/SparseLinear_10.m
| D	testsuite/data/kernels/SparsePoly_3_True_True_10.m
| D	testsuite/data/kernels/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernels/WeightedDegreePositionString_60_20_DNA.m
| D	testsuite/data/kernels/WeightedDegreeString_60_20_DNA_0.m
| D	testsuite/data/kernels/WordMatch_3.m
| D	testsuite/data/kernels/svm_Gaussian_16_30_0001_-00252730695658_15_00001.m
| D	testsuite/data/kernels/svm_Gaussian_1_0017_001_-0984442849736_15_1e-05.m
| D	testsuite/data/kernels/svm_Gaussian_1_023_001_0800284844791_15_1e-05.m
| D	testsuite/data/kernels/svm_Gaussian_1_15_001_0482488626012_15_1e-05.m
| D	testsuite/data/kernels/svm_Gaussian_1_30_0001_-0496371444648_15_00001.m
| D	testsuite/data/kernels/svm_Gaussian_1_30_001_-000101252233711_15_1e-05.m
| D	testsuite/data/kernels/svm_Gaussian_1_30_001_0659730916612_15_00001.m
| A	testsuite/data/svm/SVMLight_16_30_15_-0151559609532_0001_Gaussian_00001.m
| A	testsuite/data/svm/SVMLight_1_0017_15_0994887715902_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_023_15_0772013875341_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_15_15_0129979727806_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_30_15_0374551614297_0001_Gaussian_00001.m
| A	testsuite/data/svm/SVMLight_1_30_15_0382293280572_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_30_15_0829762948051_001_Gaussian_00001.m
| M	testsuite/generator/__init__.py
| A	testsuite/generator/dataop.py
| D	testsuite/generator/dataops.py
| A	testsuite/generator/distance.py
| D	testsuite/generator/distances.py
| A	testsuite/generator/featop.py
| D	testsuite/generator/featops.py
| A	testsuite/generator/fileop.py
| D	testsuite/generator/fileops.py
| A	testsuite/generator/kernel.py
| D	testsuite/generator/kernels.py
| A	testsuite/generator/svm.py
|  
* commit 094ebf7136ce1aa43a6e99910a696d4da181a398
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 2 13:49:39 2007 +0000
| 
|     Added suffix 'Metric' to the metric distances, extended their constructors to
|     accept features and added tests for them.
| 
| D	src/distance/Canberra.cpp
| D	src/distance/Canberra.h
| D	src/distance/Canberra.i
| A	src/distance/CanberraMetric.cpp
| A	src/distance/CanberraMetric.h
| A	src/distance/CanberraMetric.i
| D	src/distance/Chebyshew.cpp
| D	src/distance/Chebyshew.h
| D	src/distance/Chebyshew.i
| A	src/distance/ChebyshewMetric.cpp
| A	src/distance/ChebyshewMetric.h
| A	src/distance/ChebyshewMetric.i
| M	src/distance/Distance.i
| D	src/distance/Geodesic.cpp
| D	src/distance/Geodesic.h
| D	src/distance/Geodesic.i
| A	src/distance/GeodesicMetric.cpp
| A	src/distance/GeodesicMetric.h
| A	src/distance/GeodesicMetric.i
| D	src/distance/Jensen.cpp
| D	src/distance/Jensen.h
| D	src/distance/Jensen.i
| A	src/distance/JensenMetric.cpp
| A	src/distance/JensenMetric.h
| A	src/distance/JensenMetric.i
| D	src/distance/Manhattan.cpp
| D	src/distance/Manhattan.h
| D	src/distance/Manhattan.i
| A	src/distance/ManhattanMetric.cpp
| A	src/distance/ManhattanMetric.h
| A	src/distance/ManhattanMetric.i
| D	src/distance/Minkowski.cpp
| D	src/distance/Minkowski.h
| D	src/distance/Minkowski.i
| A	src/distance/MinkowskiMetric.cpp
| A	src/distance/MinkowskiMetric.h
| A	src/distance/MinkowskiMetric.i
| M	src/guilib/GUIDistance.cpp
| A	testsuite/data/distances/CanberraMetric.m
| A	testsuite/data/distances/ChebyshewMetric.m
| A	testsuite/data/distances/GeodesicMetric.m
| A	testsuite/data/distances/JensenMetric.m
| A	testsuite/data/distances/ManhattanMetric.m
| A	testsuite/data/distances/MinkowskiMetric_13.m
| M	testsuite/generator/distances.py
| M	testsuite/generator/dlist.py
|  
* commit f0bc5b99a4f810b5bcdb3411cc3e53f13cc09614
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 2 12:09:00 2007 +0000
| 
|     Generalised function to collect output parameters in testdata generator (which
|     is followed by a change in some data files due to reordered python dicts).
| 
| M	testsuite/data/distances/CanberraWordDistance_False_60_0_DNA_3.m
| M	testsuite/data/distances/EuclidianDistance.m
| A	testsuite/data/distances/HammingWordDistance_60_0_False_False_DNA_3.m
| A	testsuite/data/distances/HammingWordDistance_60_0_True_False_DNA_3.m
| D	testsuite/data/distances/HammingWordDistance_False_60_0_DNA_False_3.m
| D	testsuite/data/distances/HammingWordDistance_False_60_0_DNA_True_3.m
| M	testsuite/data/distances/ManhattanWordDistance_False_60_0_DNA_3.m
| M	testsuite/data/distances/SparseEuclidianDistance.m
| M	testsuite/data/kernels/AUC_Gaussian_10_15.m
| D	testsuite/data/kernels/Combined_3_FixedDegreeString_10_DNA_DNA_DNA_60_LinearString_3_True_60_PolyMatchString_60_10_10.m
| A	testsuite/data/kernels/Combined_60_3_LinearString_FixedDegreeString_True_10_DNA_DNA_60_PolyMatchString_60_10_10_3_DNA.m
| A	testsuite/data/kernels/CommUlongString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernels/CommUlongString_False_60_0_2_False_DNA_3.m
| A	testsuite/data/kernels/CommWordString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernels/CommWordString_False_60_0_2_False_DNA_3.m
| M	testsuite/data/kernels/Custom_7.m
| M	testsuite/data/kernels/LinearWord.m
| A	testsuite/data/kernels/SparsePoly_3_True_True_10.m
| D	testsuite/data/kernels/SparsePoly_True_True_3_10.m
| A	testsuite/data/kernels/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernels/WeightedCommWordString_False_60_0_2_False_DNA_3.m
| M	testsuite/data/kernels/WeightedDegreeString_60_20_DNA_0.m
| M	testsuite/generator/distances.py
| M	testsuite/generator/fileops.py
| M	testsuite/generator/kernels.py
|  
* commit 41bd9f5830276a1d85de679c70946f665a02365f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 2 11:32:14 2007 +0000
| 
|     Put square optimisation back into SparseGaussianKernel (and added to
|     SparseEuclidianDistance).
| 
| M	src/distance/SparseEuclidianDistance.cpp
| M	src/distance/SparseEuclidianDistance.h
| M	src/features/SparseFeatures.h
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	testsuite/data/distances/SparseEuclidianDistance.m
| M	testsuite/generator/dlist.py
|  
* commit c3129929b394eec3e4d41a556f502156b1b67170
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 30 17:53:46 2007 +0000
| 
|     Presumably fixed issue with NaN values in SparseEuclidianDistance.
|     Unfortunately, lost some speed in SparseGaussianKernel, but will be improved very
|     soon.
| 
| M	src/distance/SparseEuclidianDistance.cpp
| M	src/features/SparseFeatures.h
| M	src/kernel/SparseGaussianKernel.cpp
| A	testsuite/data/distances/SparseEuclidianDistance.m
| M	testsuite/generator/distances.py
| M	testsuite/generator/featops.py
|  
* commit a17e50776582d2b314caf36f7057bb334fcf40ea
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 30 15:43:21 2007 +0000
| 
|     Added (and adjusted) Canberra/Manhattan/HammingWordDistances to testsuite.
|     Fixed a little bug in cleaning data directories when generator is run.
| 
| M	src/distance/CanberraWordDistance.cpp
| M	src/distance/CanberraWordDistance.h
| M	src/distance/HammingWordDistance.cpp
| M	src/distance/HammingWordDistance.h
| M	src/distance/ManhattanWordDistance.cpp
| M	src/distance/ManhattanWordDistance.h
| A	testsuite/data/distances/CanberraWordDistance_False_60_0_DNA_3.m
| A	testsuite/data/distances/EuclidianDistance.m
| A	testsuite/data/distances/HammingWordDistance_False_60_0_DNA_False_3.m
| A	testsuite/data/distances/HammingWordDistance_False_60_0_DNA_True_3.m
| A	testsuite/data/distances/ManhattanWordDistance_False_60_0_DNA_3.m
| M	testsuite/generator/distances.py
| M	testsuite/generator/dlist.py
| M	testsuite/generator/fileops.py
|  
* commit 895b80eda6708b619a9fe192e304a8f38a4ab60f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 30 14:41:01 2007 +0000
| 
|     Previous purge of Canberra/Hamming/ManhattanWordKernels was incomplete and
|     presumably broke build of other interfaces than python-modular.
| 
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/lib/common.h
|  
* commit a844a19736773622075f632308f8190345a9a638
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 30 14:39:22 2007 +0000
| 
|     Previous check-in was done in wrong directory, so these had been missing.
| 
| D	testsuite/data/distances/NormSquaredDistance.m
| M	testsuite/generator/distances.py
| M	testsuite/generator/dlist.py
|  
* commit 5d0f89eb8851b197e14876a546c7a35989332c2f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 30 14:21:05 2007 +0000
| 
|     Renamed SquaredNorm to Euclidian (with compute() modified to return the
|     result's sqrt).
| 
| M	src/clustering/KMeans.cpp
| M	src/distance/Distance.i
| A	src/distance/EuclidianDistance.cpp
| A	src/distance/EuclidianDistance.h
| A	src/distance/EuclidianDistance.i
| D	src/distance/NormSquaredDistance.cpp
| D	src/distance/NormSquaredDistance.h
| D	src/distance/NormSquaredDistance.i
| A	src/distance/SparseEuclidianDistance.cpp
| A	src/distance/SparseEuclidianDistance.h
| A	src/distance/SparseEuclidianDistance.i
| D	src/distance/SparseNormSquaredDistance.cpp
| D	src/distance/SparseNormSquaredDistance.h
| D	src/distance/SparseNormSquaredDistance.i
| M	src/guilib/GUIDistance.cpp
| M	src/lib/common.h
|  
* commit abcedbe75d5de2657d5d2f2528640c49d4388b8b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 30 11:53:54 2007 +0000
| 
|     Oopsie, forgot to rename two function calls.
| 
| M	python-modular/testcases/kernels.py
|  
* commit 6f8c5c425f7174fbeba9ea1bed4a8533a62614e3
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 30 11:50:04 2007 +0000
| 
|     Big testdata update and little import fix in generator's kernels.py.
| 
| D	testsuite/data/AUCKernel_Gaussian_10_15.m
| D	testsuite/data/Chi2Kernel_10_12.m
| D	testsuite/data/CombinedKernel_3_FixedDegreeString_10_DNA_DNA_DNA_60_LinearString_3_True_60_PolyMatchString_60_10_10.m
| D	testsuite/data/CommUlongStringKernel_False_60_0_2_False_DNA_3.m
| D	testsuite/data/CommWordStringKernel_False_60_0_2_False_DNA_3.m
| D	testsuite/data/ConstKernel_230.m
| D	testsuite/data/CustomKernel_7.m
| D	testsuite/data/DiagKernel_230.m
| D	testsuite/data/FixedDegreeStringKernel_60_3_DNA.m
| D	testsuite/data/GaussianKernel_13.m
| D	testsuite/data/GaussianShiftKernel_1_13_2.m
| D	testsuite/data/HistogramWordKernel.m
| D	testsuite/data/LinearByteKernel_60_RAWBYTE.m
| D	testsuite/data/LinearKernel_10.m
| D	testsuite/data/LinearStringKernel_60_DNA.m
| D	testsuite/data/LinearWordKernel.m
| D	testsuite/data/LocalAlignmentStringKernel_60_DNA.m
| D	testsuite/data/PolyKernel_False_3_False.m
| D	testsuite/data/PolyKernel_False_3_True.m
| D	testsuite/data/PolyKernel_True_3_False.m
| D	testsuite/data/PolyKernel_True_3_True.m
| D	testsuite/data/PolyMatchStringKernel_60_3_False_DNA.m
| D	testsuite/data/PolyMatchStringKernel_60_3_True_DNA.m
| D	testsuite/data/PolyMatchWordKernel_3_False.m
| D	testsuite/data/PolyMatchWordKernel_3_True.m
| D	testsuite/data/SigmoidKernel_05_07_10.m
| D	testsuite/data/SigmoidKernel_11_13_10.m
| D	testsuite/data/SimpleLocalityImprovedStringKernel_5_60_DNA_7_5.m
| D	testsuite/data/SparseGaussianKernel_13.m
| D	testsuite/data/SparseLinearKernel_10.m
| D	testsuite/data/SparsePolyKernel_True_True_3_10.m
| D	testsuite/data/WeightedCommWordStringKernel_False_60_0_2_False_DNA_3.m
| D	testsuite/data/WeightedDegreePositionStringKernel_60_20_DNA.m
| D	testsuite/data/WeightedDegreeStringKernel_60_20_DNA_0.m
| D	testsuite/data/WordMatchKernel_3.m
| M	testsuite/data/distances/NormSquaredDistance.m
| A	testsuite/data/kernels/AUC_Gaussian_10_15.m
| A	testsuite/data/kernels/Chi2_10_12.m
| A	testsuite/data/kernels/Combined_3_FixedDegreeString_10_DNA_DNA_DNA_60_LinearString_3_True_60_PolyMatchString_60_10_10.m
| A	testsuite/data/kernels/CommUlongString_False_60_0_2_False_DNA_3.m
| A	testsuite/data/kernels/CommWordString_False_60_0_2_False_DNA_3.m
| A	testsuite/data/kernels/Const_230.m
| A	testsuite/data/kernels/Custom_7.m
| A	testsuite/data/kernels/Diag_230.m
| M	testsuite/data/kernels/Distance_CanberraMetric_17.m
| A	testsuite/data/kernels/FixedDegreeString_60_3_DNA.m
| A	testsuite/data/kernels/GaussianShift_1_13_2.m
| A	testsuite/data/kernels/Gaussian_13.m
| A	testsuite/data/kernels/LinearByte_60_RAWBYTE.m
| A	testsuite/data/kernels/LinearString_60_DNA.m
| A	testsuite/data/kernels/LinearWord.m
| A	testsuite/data/kernels/Linear_10.m
| A	testsuite/data/kernels/LocalAlignmentString_60_DNA.m
| A	testsuite/data/kernels/PolyMatchString_60_3_False_DNA.m
| A	testsuite/data/kernels/PolyMatchString_60_3_True_DNA.m
| A	testsuite/data/kernels/PolyMatchWord_3_False.m
| A	testsuite/data/kernels/PolyMatchWord_3_True.m
| A	testsuite/data/kernels/Poly_False_3_False.m
| A	testsuite/data/kernels/Poly_False_3_True.m
| A	testsuite/data/kernels/Poly_True_3_False.m
| A	testsuite/data/kernels/Poly_True_3_True.m
| A	testsuite/data/kernels/Sigmoid_05_07_10.m
| A	testsuite/data/kernels/Sigmoid_11_13_10.m
| A	testsuite/data/kernels/SimpleLocalityImprovedString_5_60_DNA_7_5.m
| A	testsuite/data/kernels/SparseGaussian_13.m
| A	testsuite/data/kernels/SparseLinear_10.m
| A	testsuite/data/kernels/SparsePoly_True_True_3_10.m
| A	testsuite/data/kernels/WeightedCommWordString_False_60_0_2_False_DNA_3.m
| A	testsuite/data/kernels/WeightedDegreePositionString_60_20_DNA.m
| A	testsuite/data/kernels/WeightedDegreeString_60_20_DNA_0.m
| A	testsuite/data/kernels/WordMatch_3.m
| A	testsuite/data/kernels/svm_Gaussian_16_30_0001_-00252730695658_15_00001.m
| A	testsuite/data/kernels/svm_Gaussian_1_0017_001_-0984442849736_15_1e-05.m
| A	testsuite/data/kernels/svm_Gaussian_1_023_001_0800284844791_15_1e-05.m
| A	testsuite/data/kernels/svm_Gaussian_1_15_001_0482488626012_15_1e-05.m
| A	testsuite/data/kernels/svm_Gaussian_1_30_0001_-0496371444648_15_00001.m
| A	testsuite/data/kernels/svm_Gaussian_1_30_001_-000101252233711_15_1e-05.m
| A	testsuite/data/kernels/svm_Gaussian_1_30_001_0659730916612_15_00001.m
| D	testsuite/data/svm_GaussianKernel_16_30_0001_-009996189242_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_0017_001_-0987832464475_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_023_001_-0860104989336_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_15_001_-0654533112253_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_30_0001_00990309065949_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_30_001_-0547489361074_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_30_001_0738526615821_15_1e-05.m
| M	testsuite/generator/kernels.py
|  
* commit d35497da26bdca0fa96dc481effdb228804ba8a4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 30 11:44:39 2007 +0000
| 
|     Established infrastructure to test Distances (including an update to
|     NormSquaredDistance).
| 
| A	python-modular/testcases/distances.py
| M	python-modular/testcases/kernels.py
| M	python-modular/testcases/run.sh
| M	python-modular/testcases/test.py
| A	python-modular/testcases/util.py
| M	src/distance/Distance.cpp
| M	src/distance/Distance.i
| M	src/distance/NormSquaredDistance.cpp
| M	src/distance/NormSquaredDistance.h
| A	testsuite/data/distances/NormSquaredDistance.m
| A	testsuite/data/kernels/Distance_CanberraMetric_17.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/distances.py
| A	testsuite/generator/dlist.py
| M	testsuite/generator/fileops.py
| M	testsuite/generator/kernels.py
|  
* commit fc57df52608e327b55033424a7297743871da04d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Nov 29 20:25:36 2007 +0000
| 
|     Purged kernels Manhattan/Canberra/HammingWord.
| 
| D	src/kernel/CanberraWordKernel.cpp
| D	src/kernel/CanberraWordKernel.h
| D	src/kernel/CanberraWordKernel.i
| D	src/kernel/HammingWordKernel.cpp
| D	src/kernel/HammingWordKernel.h
| D	src/kernel/HammingWordKernel.i
| M	src/kernel/Kernel.i
| D	src/kernel/ManhattanWordKernel.cpp
| D	src/kernel/ManhattanWordKernel.h
| D	src/kernel/ManhattanWordKernel.i
| D	testsuite/data/CanberraWordKernel_17.m
| D	testsuite/data/CanberraWordKernel_False_60_0_17_DNA_3.m
| D	testsuite/data/DistanceKernel_CanberraMetric_15.m
| D	testsuite/data/DistanceKernel_CanberraWordDistance_17.m
| D	testsuite/data/DistanceKernel_HammingWordDistance_13.m
| D	testsuite/data/DistanceKernel_ManhattanWordDistance_15.m
| D	testsuite/data/HammingWordKernel_False_13.m
| D	testsuite/data/HammingWordKernel_False_60_False_0_13_DNA_3.m
| D	testsuite/data/ManhattanWordKernel_15.m
| D	testsuite/data/ManhattanWordKernel_False_60_0_15_DNA_3.m
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit 0cf52abe65c163b0fd681cfd393ac54ba192dc81
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Nov 29 20:07:32 2007 +0000
| 
|     Converted Manhattan/Hamming/CanberraWordKernel/Distance to String<WORD>.
|     As can be seen in the output generated by the testsuite, the aforementioned
|     kernels and distances yield the same results, so the kernels will be removed
|     with the next commit.
| 
| M	src/distance/CanberraWordDistance.cpp
| M	src/distance/CanberraWordDistance.h
| M	src/distance/CanberraWordDistance.i
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/distance/HammingWordDistance.cpp
| M	src/distance/HammingWordDistance.h
| M	src/distance/HammingWordDistance.i
| M	src/distance/ManhattanWordDistance.cpp
| M	src/distance/ManhattanWordDistance.h
| M	src/distance/ManhattanWordDistance.i
| M	src/kernel/CanberraWordKernel.cpp
| M	src/kernel/CanberraWordKernel.h
| M	src/kernel/DistanceKernel.cpp
| M	src/kernel/DistanceKernel.h
| M	src/kernel/HammingWordKernel.cpp
| M	src/kernel/HammingWordKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/ManhattanWordKernel.cpp
| M	src/kernel/ManhattanWordKernel.h
| A	testsuite/data/CanberraWordKernel_False_60_0_17_DNA_3.m
| A	testsuite/data/DistanceKernel_CanberraWordDistance_17.m
| A	testsuite/data/DistanceKernel_HammingWordDistance_13.m
| A	testsuite/data/DistanceKernel_ManhattanWordDistance_15.m
| A	testsuite/data/HammingWordKernel_False_60_False_0_13_DNA_3.m
| A	testsuite/data/ManhattanWordKernel_False_60_0_15_DNA_3.m
| M	testsuite/generator/__init__.py
| D	testsuite/generator/distance.py
| A	testsuite/generator/distances.py
| M	testsuite/generator/fileops.py
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit 22b43e775df9fa46a7b1813abf58e4941287309a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 27 19:40:18 2007 +0000
| 
|     - some cleanups while showing sebastian the code
|     - some more docu for SVM.h
| 
| M	src/base/Version.cpp
| M	src/base/Version.h
| M	src/classifier/Classifier.doxy
| M	src/classifier/Classifier.i
| M	src/classifier/KNN.cpp
| M	src/classifier/svm/SVM.h
| M	src/clustering/Clustering.i
| M	src/distance/DistanceMachine.i
| M	src/distributions/histogram/Histogram.cpp
|  
* commit 4ca73b528d6318d47817e9a5effe0f77ef8d7747
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 27 08:53:30 2007 +0000
| 
|     Forgot to update testdata after changes in data format in version 2477.
| 
| M	python-modular/testcases/kernels.py
| M	testsuite/data/AUCKernel_Gaussian_10_15.m
| M	testsuite/data/CanberraWordKernel_17.m
| M	testsuite/data/Chi2Kernel_10_12.m
| M	testsuite/data/CombinedKernel_3_FixedDegreeString_10_DNA_DNA_DNA_60_LinearString_3_True_60_PolyMatchString_60_10_10.m
| M	testsuite/data/CommUlongStringKernel_False_60_0_2_False_DNA_3.m
| M	testsuite/data/CommWordStringKernel_False_60_0_2_False_DNA_3.m
| M	testsuite/data/ConstKernel_230.m
| M	testsuite/data/CustomKernel_7.m
| M	testsuite/data/DiagKernel_230.m
| M	testsuite/data/DistanceKernel_CanberraMetric_15.m
| M	testsuite/data/FixedDegreeStringKernel_60_3_DNA.m
| M	testsuite/data/GaussianKernel_13.m
| M	testsuite/data/GaussianShiftKernel_1_13_2.m
| M	testsuite/data/HammingWordKernel_False_13.m
| M	testsuite/data/HistogramWordKernel.m
| M	testsuite/data/LinearByteKernel_60_RAWBYTE.m
| M	testsuite/data/LinearKernel_10.m
| M	testsuite/data/LinearStringKernel_60_DNA.m
| M	testsuite/data/LinearWordKernel.m
| M	testsuite/data/LocalAlignmentStringKernel_60_DNA.m
| M	testsuite/data/ManhattanWordKernel_15.m
| M	testsuite/data/PolyKernel_False_3_False.m
| M	testsuite/data/PolyKernel_False_3_True.m
| M	testsuite/data/PolyKernel_True_3_False.m
| M	testsuite/data/PolyKernel_True_3_True.m
| M	testsuite/data/PolyMatchStringKernel_60_3_False_DNA.m
| M	testsuite/data/PolyMatchStringKernel_60_3_True_DNA.m
| M	testsuite/data/PolyMatchWordKernel_3_False.m
| M	testsuite/data/PolyMatchWordKernel_3_True.m
| M	testsuite/data/SigmoidKernel_05_07_10.m
| M	testsuite/data/SigmoidKernel_11_13_10.m
| M	testsuite/data/SimpleLocalityImprovedStringKernel_5_60_DNA_7_5.m
| M	testsuite/data/SparseGaussianKernel_13.m
| M	testsuite/data/SparseLinearKernel_10.m
| M	testsuite/data/SparsePolyKernel_True_True_3_10.m
| M	testsuite/data/WeightedCommWordStringKernel_False_60_0_2_False_DNA_3.m
| M	testsuite/data/WeightedDegreePositionStringKernel_60_20_DNA.m
| M	testsuite/data/WeightedDegreeStringKernel_60_20_DNA_0.m
| M	testsuite/data/WordMatchKernel_3.m
| A	testsuite/data/svm_GaussianKernel_16_30_0001_-009996189242_15_00001.m
| D	testsuite/data/svm_GaussianKernel_16_30_0001_-0712411277882_15_00001.m
| A	testsuite/data/svm_GaussianKernel_1_0017_001_-0987832464475_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_0017_001_-0994840232717_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_023_001_-0860104989336_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_023_001_0738193374723_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_15_001_-0166814836078_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_15_001_-0654533112253_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_30_0001_00990309065949_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_30_0001_0515844230415_15_00001.m
| A	testsuite/data/svm_GaussianKernel_1_30_001_-0547489361074_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_30_001_-0604902457905_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_30_001_0131283057203_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_30_001_0738526615821_15_1e-05.m
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit e692b2ebc98bd55539aad5d44558303f15370ea8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 27 08:35:16 2007 +0000
| 
|     Put computation of DistanceKernel in testcase generator back into kernels.py
|     which was seperated due to a misunderstanding of how Distances are to be
|     tested.
| 
| M	testsuite/data/DistanceKernel_CanberraMetric_15.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/distance.py
| M	testsuite/generator/kernels.py
|  
* commit 492a767bf2b443a3820f8ac7b9b3821f5287ddc5
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Nov 26 20:10:15 2007 +0000
| 
|     Fixed some upper-/lowercase inconsistencies in testsuite.
| 
| M	python-modular/testcases/kernels.py
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit 246d7d753127081e3b958e0f7e90f01c81e6140b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Nov 26 18:27:26 2007 +0000
| 
|     First (wrong) attempt at testing HistogramWord (and SalzbergWord).
| 
| A	testsuite/data/HistogramWordKernel.m
| M	testsuite/generator/dataops.py
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit 7e9ae44b3624d74c0b5ff3c861ada8fedf50ca25
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Nov 26 14:36:47 2007 +0000
| 
|     Added README to define what build dependencies are necessary to generate
|     the documentation
| 
| A	doc/README.deps
|  
* commit 1e947ad873c72805cf22256b461786cc26b14036
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 26 13:05:47 2007 +0000
| 
|     let doxygen only scan .h files, ignore *_wrap.h files, speeds things up tremendously
| 
| M	src/classifier/Classifier.doxy
| M	src/clustering/Clustering.doxy
| M	src/distance/Distance.doxy
| M	src/distributions/Distribution.doxy
| M	src/features/Features.doxy
| M	src/kernel/Kernel.doxy
| M	src/lib/Library.doxy
| M	src/preproc/PreProc.doxy
| M	src/regression/Regression.doxy
| M	src/structure/Structure.doxy
|  
* commit af91987824efa29c16f1d9a130be08c07214cd12
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 26 12:50:25 2007 +0000
| 
|     add void deps to clustering/CLustering_doxygen.i
| 
| M	src/.generate_link_dependencies.py
|  
* commit 8e3ef5e3b269eaf888bb6fd7d5ae8a78c327fcaf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 25 21:21:20 2007 +0000
| 
|     clustering should include clustering stuff not classifiers... argh
|     cleanup Makefile
| 
| M	src/Makefile
| M	src/clustering/Clustering.i
|  
* commit 20b0cda151d579e9c89940b264c846d9c136d690
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 25 20:14:49 2007 +0000
| 
|     allow to disable doxygen python-modular doc generation
| 
| M	src/Makefile
| M	src/configure
|  
* commit 197dbdf56c49d4360dbc5bab8244c6774f6cbb9e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 25 20:07:15 2007 +0000
| 
|     adjust make clean
| 
| M	src/Makefile
|  
* commit 5342814f83eafa652c7daf5cf958704fa321f4e9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 25 19:59:02 2007 +0000
| 
|     USE -> HAVE
| 
| M	src/classifier/Classifier.i
| M	src/clustering/Clustering.i
| M	src/distance/Distance.i
| M	src/distributions/Distribution.i
| M	src/features/Features.i
| M	src/lib/Library.i
| M	src/preproc/PreProc.i
| M	src/regression/Regression.i
| M	src/structure/Structure.i
|  
* commit f38945c583985c9e06dec24cba510e661110caf6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 25 19:57:51 2007 +0000
| 
|     add build logic for shogun w/ doxyfile
| 
| M	src/.doxy2swig.py
| M	src/.generate_link_dependencies.py
| M	src/Makefile
| A	src/classifier/Classifier.doxy
| M	src/classifier/Classifier.i
| A	src/clustering/Clustering.doxy
| M	src/clustering/Clustering.i
| M	src/configure
| A	src/distance/Distance.doxy
| M	src/distance/Distance.i
| A	src/distributions/Distribution.doxy
| M	src/distributions/Distribution.i
| A	src/features/Features.doxy
| M	src/features/Features.i
| A	src/kernel/Kernel.doxy
| M	src/kernel/Kernel.i
| A	src/lib/Library.doxy
| M	src/lib/Library.i
| A	src/preproc/PreProc.doxy
| M	src/preproc/PreProc.i
| A	src/regression/Regression.doxy
| M	src/regression/Regression.i
| A	src/structure/Structure.doxy
| M	src/structure/Structure.i
|  
* commit 18a84bd4615a05c155ecb21862668756016e0734
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 25 15:27:48 2007 +0000
| 
|     argh, fix typo
| 
| M	src/configure
|  
* commit 435db81cb2e95db5b339835b2f9ccd8514e30468
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 25 11:44:27 2007 +0000
| 
|     Fixed tests for CustomKernel.
| 
| M	python-modular/testcases/kernels.py
| M	python-modular/testcases/test.py
| M	testsuite/data/CustomKernel_7.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/dataops.py
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit f597a5dbacfdd10c0378ad3ac36d3bf6cc99ab89
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 25 10:34:47 2007 +0000
| 
|     OK, the roadmap to 0.5.0 is clear, we aim for a complete test suite for
|     python-modular and doxygen online help in python (from cmdline), doxygen
|     documentation and examples
|     
|     - first steps to autodetect makefile/build depency integreation for doxygen
| 
| A	src/.doxy2swig.py
| M	src/Makefile
| M	src/NEWS
| M	src/configure
|  
* commit 544e9b4a3142f0e3ea48969b9152268f6ceb458e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 25 08:55:26 2007 +0000
| 
|     fixes for custom kernel, potentially needs adjustments in other interfaces
| 
| M	python-modular/testcases/kernels.py
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/CustomKernel.i
| M	src/lib/Mathematics.h
| M	testsuite/data/CustomKernel_7.m
| M	testsuite/data/LocalAlignmentStringKernel_60_DNA.m
| M	testsuite/generator/kernels.py
|  
* commit 55c90b15799dea3d7a92d3df972c750ac1e7f36e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Nov 24 13:55:34 2007 +0000
| 
|     Added testing for Custom kernel, while bugfixing and cleaning it. The testdata
|     looks weird, though, and has to be investigated further.
| 
| M	python-modular/testcases/kernels.py
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	testsuite/data/AUCKernel_Gaussian_10_15.m
| M	testsuite/data/CanberraWordKernel_17.m
| M	testsuite/data/Chi2Kernel_10_12.m
| D	testsuite/data/CombinedKernel_10_DNA_PolyMatchString_60_0_3_LinearString_FixedDegreeString_False_10_3_10_3_True.m
| A	testsuite/data/CombinedKernel_3_FixedDegreeString_10_DNA_DNA_DNA_60_LinearString_3_True_60_PolyMatchString_60_10_10.m
| M	testsuite/data/CommUlongStringKernel_False_60_0_2_False_DNA_3.m
| M	testsuite/data/CommWordStringKernel_False_60_0_2_False_DNA_3.m
| M	testsuite/data/ConstKernel_230.m
| A	testsuite/data/CustomKernel_7.m
| M	testsuite/data/DiagKernel_230.m
| M	testsuite/data/DistanceKernel_CanberraMetric_15.m
| M	testsuite/data/FixedDegreeStringKernel_60_3_DNA.m
| M	testsuite/data/GaussianKernel_13.m
| M	testsuite/data/GaussianShiftKernel_1_13_2.m
| M	testsuite/data/HammingWordKernel_False_13.m
| M	testsuite/data/LinearByteKernel_60_RAWBYTE.m
| M	testsuite/data/LinearKernel_10.m
| M	testsuite/data/LinearStringKernel_60_DNA.m
| M	testsuite/data/LinearWordKernel.m
| M	testsuite/data/LocalAlignmentStringKernel_60_DNA.m
| M	testsuite/data/ManhattanWordKernel_15.m
| M	testsuite/data/PolyKernel_False_3_False.m
| M	testsuite/data/PolyKernel_False_3_True.m
| M	testsuite/data/PolyKernel_True_3_False.m
| M	testsuite/data/PolyKernel_True_3_True.m
| M	testsuite/data/PolyMatchStringKernel_60_3_False_DNA.m
| M	testsuite/data/PolyMatchStringKernel_60_3_True_DNA.m
| M	testsuite/data/PolyMatchWordKernel_3_False.m
| M	testsuite/data/PolyMatchWordKernel_3_True.m
| M	testsuite/data/SigmoidKernel_05_07_10.m
| M	testsuite/data/SigmoidKernel_11_13_10.m
| M	testsuite/data/SimpleLocalityImprovedStringKernel_5_60_DNA_7_5.m
| M	testsuite/data/SparseGaussianKernel_13.m
| M	testsuite/data/SparseLinearKernel_10.m
| M	testsuite/data/SparsePolyKernel_True_True_3_10.m
| M	testsuite/data/WeightedCommWordStringKernel_False_60_0_2_False_DNA_3.m
| M	testsuite/data/WeightedDegreePositionStringKernel_60_20_DNA.m
| M	testsuite/data/WeightedDegreeStringKernel_60_20_DNA_0.m
| M	testsuite/data/WordMatchKernel_3.m
| A	testsuite/data/svm_GaussianKernel_16_30_0001_-0712411277882_15_00001.m
| D	testsuite/data/svm_GaussianKernel_16_30_0001_0137701197402_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_0017_001_-0992246586824_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_0017_001_-0994840232717_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_023_001_-0976073792555_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_023_001_0738193374723_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_15_001_-0166814836078_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_15_001_0572167113586_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_30_0001_-016890375816_15_00001.m
| A	testsuite/data/svm_GaussianKernel_1_30_0001_0515844230415_15_00001.m
| A	testsuite/data/svm_GaussianKernel_1_30_001_-0604902457905_15_00001.m
| A	testsuite/data/svm_GaussianKernel_1_30_001_0131283057203_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_30_001_0292947069007_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_30_001_0679912384665_15_1e-05.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/dataops.py
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit e9ed77295f5360cc7fcf07497fc83bc8fc38ef62
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 24 05:03:11 2007 +0000
| 
|     fix a compile warning
| 
| M	src/features/StringFeatures.h
|  
* commit 3649f7d33cabe6c9b026a1a35e9bc1b4518a0120
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 23 21:02:50 2007 +0000
| 
|     Added CommUlongStringKernel for testing.
| 
| M	python-modular/testcases/kernels.py
| M	src/features/StringFeatures.i
| A	testsuite/data/CommUlongStringKernel_False_60_0_2_False_DNA_3.m
| M	testsuite/data/CommWordStringKernel_False_60_0_2_False_DNA_3.m
| M	testsuite/data/WeightedCommWordStringKernel_False_60_0_2_False_DNA_3.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/featops.py
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit 22b6e263a212fe8ab3158729dfcdf534b50700da
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 23 12:58:48 2007 +0000
| 
|     Added a first testcase for Distance kernel with one Distance and broke
|     out some stuff into more modules in the test generator.
|     (unsorted Python dicts are annoying in file names, hence the long list of
|     changed data files)
| 
| M	python-modular/testcases/kernels.py
| M	src/distance/Canberra.i
| M	testsuite/data/CanberraWordKernel_17.m
| M	testsuite/data/Chi2Kernel_10_12.m
| D	testsuite/data/CombinedKernel_10_DNA_60_3_0_3_LinearString_FixedDegreeString_False_10_10_True_3_PolyMatchString.m
| M	testsuite/data/CombinedKernel_10_DNA_PolyMatchString_60_0_3_LinearString_FixedDegreeString_False_10_3_10_3_True.m
| A	testsuite/data/CommWordStringKernel_False_60_0_2_False_DNA_3.m
| D	testsuite/data/CommWordStringKernel_False_60_2_0_3_False_DNA.m
| M	testsuite/data/ConstKernel_230.m
| M	testsuite/data/DiagKernel_230.m
| A	testsuite/data/DistanceKernel_CanberraMetric_15.m
| D	testsuite/data/FixedDegreeStringKernel_3_DNA_60.m
| A	testsuite/data/FixedDegreeStringKernel_60_3_DNA.m
| M	testsuite/data/GaussianKernel_13.m
| M	testsuite/data/GaussianShiftKernel_1_13_2.m
| M	testsuite/data/HammingWordKernel_False_13.m
| M	testsuite/data/LinearByteKernel_60_RAWBYTE.m
| M	testsuite/data/LinearKernel_10.m
| A	testsuite/data/LinearStringKernel_60_DNA.m
| D	testsuite/data/LinearStringKernel_DNA_60.m
| M	testsuite/data/LinearWordKernel.m
| A	testsuite/data/LocalAlignmentStringKernel_60_DNA.m
| D	testsuite/data/LocalAlignmentStringKernel_DNA_60.m
| M	testsuite/data/ManhattanWordKernel_15.m
| M	testsuite/data/PolyKernel_False_3_False.m
| M	testsuite/data/PolyKernel_False_3_True.m
| M	testsuite/data/PolyKernel_True_3_False.m
| M	testsuite/data/PolyKernel_True_3_True.m
| D	testsuite/data/PolyMatchStringKernel_3_False_DNA_60.m
| D	testsuite/data/PolyMatchStringKernel_3_True_DNA_60.m
| A	testsuite/data/PolyMatchStringKernel_60_3_False_DNA.m
| A	testsuite/data/PolyMatchStringKernel_60_3_True_DNA.m
| M	testsuite/data/PolyMatchWordKernel_3_False.m
| M	testsuite/data/PolyMatchWordKernel_3_True.m
| M	testsuite/data/SigmoidKernel_05_07_10.m
| M	testsuite/data/SigmoidKernel_11_13_10.m
| A	testsuite/data/SimpleLocalityImprovedStringKernel_5_60_DNA_7_5.m
| D	testsuite/data/SimpleLocalityImprovedStringKernel_5_DNA_7_5_60.m
| M	testsuite/data/SparseGaussianKernel_13.m
| M	testsuite/data/SparseLinearKernel_10.m
| M	testsuite/data/SparsePolyKernel_True_True_3_10.m
| A	testsuite/data/WeightedCommWordStringKernel_False_60_0_2_False_DNA_3.m
| D	testsuite/data/WeightedCommWordStringKernel_False_60_2_0_3_False_DNA.m
| D	testsuite/data/WeightedDegreePositionStringKernel_20_DNA_60.m
| A	testsuite/data/WeightedDegreePositionStringKernel_60_20_DNA.m
| D	testsuite/data/WeightedDegreeStringKernel_20_DNA_0_60.m
| A	testsuite/data/WeightedDegreeStringKernel_60_20_DNA_0.m
| M	testsuite/data/WordMatchKernel_3.m
| D	testsuite/data/svm_GaussianKernel_16_30_0001_-0304929420736_15_00001.m
| A	testsuite/data/svm_GaussianKernel_16_30_0001_0137701197402_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_0017_001_-0990040918622_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_0017_001_-0992246586824_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_023_001_-0976073792555_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_023_001_0921399762702_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_15_001_-0535664969494_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_15_001_0572167113586_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_30_0001_-016890375816_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_30_0001_0190791921506_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_30_001_-073886063353_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_30_001_0292947069007_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_30_001_0386970626218_15_00001.m
| A	testsuite/data/svm_GaussianKernel_1_30_001_0679912384665_15_1e-05.m
| M	testsuite/generator/__init__.py
| A	testsuite/generator/dataops.py
| A	testsuite/generator/distance.py
| A	testsuite/generator/featops.py
| M	testsuite/generator/fileops.py
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit cab4c7deacedf4ed61f291f9b2c7a03d7e4d36e1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 23 11:25:57 2007 +0000
| 
|     Preparing for new Release shogun_0.4.4
| 
| M	R/Makefile
| M	R/sg/DESCRIPTION
|  
* commit 25266f09e652660df66fcf90e3ada4ce5b79f88d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 23 11:22:40 2007 +0000
| 
|     add Christoph Lampert to authors
| 
| M	src/.authors
|  
* commit c687546673caed00690577a1f2e9f13b8d726677
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 23 10:47:15 2007 +0000
| 
|     fix dates
| 
| M	src/NEWS
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/Hierarchical.h
| M	src/clustering/KMeans.h
|  
* commit cf0e04c08fbaf172fb1d5280252c5cbdd525ff84
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 23 10:46:50 2007 +0000
| 
|     fill in copyright information
| 
| M	src/classifier/svm/libocas.cpp
| M	src/classifier/svm/libocas.h
| M	src/classifier/svm/qpssvmlib.cpp
| M	src/classifier/svm/qpssvmlib.h
|  
* commit 34158739e8585da77e489dddab53f1fbd45a2dba
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 23 09:35:21 2007 +0000
| 
|     More Manhatten->Manhattan changes.
| 
| M	src/guilib/GUIDistance.cpp
| M	testsuite/data/CanberraWordKernel_17.m
| A	testsuite/data/CombinedKernel_10_DNA_PolyMatchString_60_0_3_LinearString_FixedDegreeString_False_10_3_10_3_True.m
| M	testsuite/data/HammingWordKernel_False_13.m
| M	testsuite/data/LinearWordKernel.m
| A	testsuite/data/ManhattanWordKernel_15.m
| D	testsuite/data/ManhattenWordKernel_15.m
| M	testsuite/data/PolyMatchWordKernel_3_False.m
| M	testsuite/data/PolyMatchWordKernel_3_True.m
| M	testsuite/data/WordMatchKernel_3.m
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit 7dc0746629e55997108187c0984e40441da03b60
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 23 09:28:28 2007 +0000
| 
|     include should not be needed
| 
| M	src/kernel/ManhattanWordKernel.i
|  
* commit 2c711818146a9f6e93a9cad508dbb9798f03a2f9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 23 09:25:07 2007 +0000
| 
|     Added/changed debug stuff which seemed helpful in finding fix mentioned in
|     previous check-in.
| 
| M	src/base/SGObject.h
| M	src/base/SGObject.i
| M	src/features/Features.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/Kernel.cpp
|  
* commit 72b5e02dd57c597617e31fe3b4ee953c78800e16
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 23 08:43:06 2007 +0000
| 
|     don't call delete but SG_UNREF for swig interface in list, should fix double free w/ combined kernel
| 
| M	src/lib/List.h
|  
* commit 7b8dc881f3a506bcc2fa3b67bfbab6eada8481fe
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Nov 21 20:36:43 2007 +0000
| 
|     While unsuccesfully finding a way to handle typemaps and templates properly in
|     features/StringFeatures.i, found and fixed a segfault in
|     features/StringFeatures.h:get_string.
| 
| M	src/features/StringFeatures.h
|  
* commit 4a28333b2d6c02522d0063cb02193aa154bf6ff9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 21 15:52:05 2007 +0000
| 
|     fix building of python interface update NEWS for new release
| 
| M	src/NEWS
| M	src/guilib/GUIPython.cpp
|  
* commit 99fb530953c02b518480044d39dc1cdf40699a60
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 20 17:39:19 2007 +0000
| 
|     Added capability for testing epsilon and tube epsilon in SVMs.
| 
| M	python-modular/testcases/kernels.py
| D	testsuite/data/svm_GaussianKernel_0017_16_-0986053229288_15.m
| D	testsuite/data/svm_GaussianKernel_0017_1_-0983232003456_15.m
| D	testsuite/data/svm_GaussianKernel_023_1_-085865028282_15.m
| D	testsuite/data/svm_GaussianKernel_15_1_0538093680275_15.m
| A	testsuite/data/svm_GaussianKernel_16_30_0001_-0304929420736_15_00001.m
| A	testsuite/data/svm_GaussianKernel_1_0017_001_-0990040918622_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_023_001_0921399762702_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_15_001_-0535664969494_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_30_0001_0190791921506_15_00001.m
| A	testsuite/data/svm_GaussianKernel_1_30_001_-073886063353_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_30_001_0386970626218_15_00001.m
| D	testsuite/data/svm_GaussianKernel_30_1_-0426399161444_15.m
| M	testsuite/generator/kernels.py
|  
* commit 20af286d0daca7de12c0b96545b1fee16d92d00a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 20 17:05:53 2007 +0000
| 
|     Added ASSERTs to prevent AUC kernel from segfaulting when subkernel is not
|     properly initialised; also added similar ASSERTs to kernel/Kernel.h:kernel().
| 
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/Kernel.h
|  
* commit 85fec1a88833a9a8abdf568d9514a775c6601402
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 20 16:01:48 2007 +0000
| 
|     fix memory leak in libsvm wrapper as reported by alexander binder
| 
| M	src/classifier/svm/LibSVM.cpp
|  
* commit 18876d78efe9fdb4f7fa511009a251cdac21fbbe
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 20 15:04:36 2007 +0000
| 
|     Fixed problem with NaNs in AUC kernel's output (which also influences the
|     other Word kernels).
| 
| M	python-modular/testcases/kernels.py
| M	testsuite/data/AUCKernel_Gaussian_10_15.m
| M	testsuite/data/CanberraWordKernel_17.m
| M	testsuite/data/HammingWordKernel_False_13.m
| M	testsuite/data/LinearByteKernel_60_RAWBYTE.m
| M	testsuite/data/LinearWordKernel.m
| M	testsuite/data/PolyMatchWordKernel_3_False.m
| M	testsuite/data/PolyMatchWordKernel_3_True.m
| M	testsuite/data/WordMatchKernel_3.m
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit 4cf7458f70270944b8d59d88d9bd04f24ff6e680
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 20 11:04:21 2007 +0000
| 
|     LinearByte now uses alphabet RAWBYTE in testsuite.
| 
| A	testsuite/data/LinearByteKernel_60_RAWBYTE.m
| D	testsuite/data/LinearByteKernel_DNA_60.m
| M	testsuite/generator/kernels.py
|  
* commit 5275d65c896fff1abb10fb731d816b8777150f0d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 19 22:24:05 2007 +0000
| 
|     - don't forget to SG_UNREF kernels in CombinedKernel on deletion
|     - add sparse distance
|     - add debug code to analyse double free in combined kernel
| 
| M	src/distance/Distance.i
| M	src/distance/RealDistance.i
| A	src/distance/SparseDistance.i
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	testsuite/generator/kernels.py
|  
* commit 4b3ee2b96667368a1931f0405c7aeebd4a8952fa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 19 15:34:08 2007 +0000
| 
|     manhattEn -> manhattAn
|     move align function from realfeatures to mathematics
| 
| M	src/features/RealFeatures.cpp
| M	src/features/RealFeatures.h
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.i
| A	src/kernel/ManhattanWordKernel.cpp
| A	src/kernel/ManhattanWordKernel.h
| A	src/kernel/ManhattanWordKernel.i
| D	src/kernel/ManhattenWordKernel.cpp
| D	src/kernel/ManhattenWordKernel.h
| D	src/kernel/ManhattenWordKernel.i
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/common.h
|  
* commit 28ceebe4479769c24166c0569b9903a1f78d631a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 18 17:12:32 2007 +0000
| 
|     Added AUC kernel. way too many NaNs, though...
| 
| M	python-modular/testcases/kernels.py
| A	testsuite/data/AUCKernel_Gaussian_10_15.m
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit 9bb912e57862597c9db70551c9ce9c806a0111db
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Nov 18 12:00:44 2007 +0000
| 
|     reenabled a feature that was disabled for optimization (but its still fast).
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
|  
* commit f038735628b3e5e93435e40aa07064c988597627
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Nov 18 01:13:21 2007 +0000
| 
|     fix uninitialized memory reads.
| 
| M	src/structure/DynProg.cpp
|  
* commit 9bacf89a357dbeedca34e573b71e9550feb955e0
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Nov 18 01:05:01 2007 +0000
| 
|     two fixes of some previous optimizations... :-|
| 
| M	src/structure/DynProg.cpp
|  
* commit eed25f6ae9bbf6e5b19734982fefae164d8e5698
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Nov 17 00:28:24 2007 +0000
| 
|     Speedups for the Viterbi-algorithm.
|     Runs now about twice as fast and still gives the same results for nbest=1.
|     Untestet for nbest>1.
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 879e9472b369cda9db2f56e0b54eb9c690734d32
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Nov 15 21:28:15 2007 +0000
| 
|     testing...
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/Plif.cpp
|  
* commit 697de5f82aa00bc69c2ddf97b9b38075d41edb18
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 15 13:14:22 2007 +0000
| 
|     argh! this is the whydidntanyonenoticethisearlier-bug which must have been around for almost a year...
|     
|     ASSERT was undefined in matlab interface... so THERE WAS NO ERROR CHECKING
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/structure/DynProg.cpp
|  
* commit 7cd8923c490b198432660de3df9ba3eba3d5aa2f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Nov 14 21:07:26 2007 +0000
| 
|     Added code for handling CombinedKernel (and presumably other kernels
|     using subkernels).
|     the little bugger does not behave nicely, though: currently, there is an
|     error like this: *** glibc detected *** python: corrupted double-linked
|     list: 0x082a9b58 on test, but not on generation of the test data (which
|     actually should be the same). also, when using kernels of different
|     feature classes, like String and Simple, it throws a Shogun exception.
|     will have to investigate further.
| 
| M	python-modular/testcases/kernels.py
| M	python-modular/testcases/test.py
| M	testsuite/data/CanberraWordKernel_17.m
| M	testsuite/data/Chi2Kernel_10_12.m
| A	testsuite/data/CombinedKernel_10_DNA_60_3_0_3_LinearString_FixedDegreeString_False_10_10_True_3_PolyMatchString.m
| D	testsuite/data/CommWordStringKernel_False_60_0_DNA_3_2_False.m
| A	testsuite/data/CommWordStringKernel_False_60_2_0_3_False_DNA.m
| M	testsuite/data/ConstKernel_230.m
| M	testsuite/data/DiagKernel_230.m
| A	testsuite/data/FixedDegreeStringKernel_3_DNA_60.m
| D	testsuite/data/FixedDegreeStringKernel_DNA_3_60.m
| M	testsuite/data/GaussianKernel_13.m
| M	testsuite/data/GaussianShiftKernel_1_13_2.m
| D	testsuite/data/HammingWordKernel_13_False.m
| A	testsuite/data/HammingWordKernel_False_13.m
| M	testsuite/data/LinearByteKernel_DNA_60.m
| M	testsuite/data/LinearKernel_10.m
| M	testsuite/data/LinearStringKernel_DNA_60.m
| M	testsuite/data/LinearWordKernel.m
| M	testsuite/data/LocalAlignmentStringKernel_DNA_60.m
| M	testsuite/data/ManhattenWordKernel_15.m
| D	testsuite/data/PolyKernel_3_False_False.m
| D	testsuite/data/PolyKernel_3_False_True.m
| D	testsuite/data/PolyKernel_3_True_False.m
| D	testsuite/data/PolyKernel_3_True_True.m
| A	testsuite/data/PolyKernel_False_3_False.m
| A	testsuite/data/PolyKernel_False_3_True.m
| A	testsuite/data/PolyKernel_True_3_False.m
| A	testsuite/data/PolyKernel_True_3_True.m
| A	testsuite/data/PolyMatchStringKernel_3_False_DNA_60.m
| A	testsuite/data/PolyMatchStringKernel_3_True_DNA_60.m
| D	testsuite/data/PolyMatchStringKernel_DNA_3_60_False.m
| D	testsuite/data/PolyMatchStringKernel_DNA_3_60_True.m
| M	testsuite/data/PolyMatchWordKernel_3_False.m
| M	testsuite/data/PolyMatchWordKernel_3_True.m
| A	testsuite/data/SigmoidKernel_05_07_10.m
| D	testsuite/data/SigmoidKernel_05_10_07.m
| D	testsuite/data/SigmoidKernel_11_10_13.m
| A	testsuite/data/SigmoidKernel_11_13_10.m
| A	testsuite/data/SimpleLocalityImprovedStringKernel_5_DNA_7_5_60.m
| D	testsuite/data/SimpleLocalityImprovedStringKernel_DNA_5_5_7_60.m
| M	testsuite/data/SparseGaussianKernel_13.m
| M	testsuite/data/SparseLinearKernel_10.m
| D	testsuite/data/SparsePolyKernel_3_10_True_True.m
| A	testsuite/data/SparsePolyKernel_True_True_3_10.m
| D	testsuite/data/WeightedCommWordStringKernel_False_60_0_DNA_3_2_False.m
| A	testsuite/data/WeightedCommWordStringKernel_False_60_2_0_3_False_DNA.m
| A	testsuite/data/WeightedDegreePositionStringKernel_20_DNA_60.m
| D	testsuite/data/WeightedDegreePositionStringKernel_DNA_20_60.m
| A	testsuite/data/WeightedDegreeStringKernel_20_DNA_0_60.m
| D	testsuite/data/WeightedDegreeStringKernel_DNA_0_20_60.m
| M	testsuite/data/WordMatchKernel_3.m
| D	testsuite/data/svm_GaussianKernel_0017_15_16_-0996620794062.m
| D	testsuite/data/svm_GaussianKernel_0017_15_1_-0987072649055.m
| A	testsuite/data/svm_GaussianKernel_0017_16_-0986053229288_15.m
| A	testsuite/data/svm_GaussianKernel_0017_1_-0983232003456_15.m
| D	testsuite/data/svm_GaussianKernel_023_15_1_-0888718286876.m
| A	testsuite/data/svm_GaussianKernel_023_1_-085865028282_15.m
| D	testsuite/data/svm_GaussianKernel_15_15_1_00600785466709.m
| A	testsuite/data/svm_GaussianKernel_15_1_0538093680275_15.m
| D	testsuite/data/svm_GaussianKernel_30_15_1_-034632271332.m
| A	testsuite/data/svm_GaussianKernel_30_1_-0426399161444_15.m
| M	testsuite/generator/fileops.py
| M	testsuite/generator/kernels.py
| A	testsuite/generator/klist.py
| D	testsuite/klist.py
|  
* commit d6b3a97197aeb04c6c7279c0c05dc48f57080559
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 14 18:36:48 2007 +0000
| 
|     now destroy tree then recreate an empty one
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
|  
* commit 63cf5978d84129136df16055c5a320f596442b7a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 14 15:30:03 2007 +0000
| 
|     really destroy the tree after doing a full batch computation run, this should
|     especially help the wd* kernels when many of them are chained via the combined
|     kernel to reduce memory usage
| 
| M	src/classifier/svm/SVMOcas.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit ad62f1af5b55fba76f9274b10f6f5c92592b56b4
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Nov 13 20:23:02 2007 +0000
| 
|     revert
| 
| M	src/structure/DynProg.cpp
|  
* commit 33cd15849b6a33ca2130d902f0e61b2fd4edbff1
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Nov 13 20:20:21 2007 +0000
| 
|     fixed typo
| 
| M	src/kernel/CombinedKernel.cpp
| M	src/structure/DynProg.cpp
|  
* commit a4bf25b5b34d30c206b1fd4fd86df59c453bbc18
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 13 20:16:14 2007 +0000
| 
|     fix serious bug in output computation which could occur only when a kernel
|     supporting batch computation was used in conjunction with a kernel neither
|     capable of batch computation and linadd AND the number of threads was > 1
|     
|     note that this may have lead to wrong svm - models on TRAINING if svm lightwas
|     used and could also lead to random corruptions when computing output via
|     classify
| 
| M	src/kernel/CombinedKernel.cpp
|  
* commit a2ccaec2808f3e32a43d79308e701e45df7e88c4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 13 15:38:46 2007 +0000
| 
|     Added support for multiple threads for testing SVMs.
| 
| M	python-modular/testcases/kernels.py
| D	testsuite/data/svm_GaussianKernel_0017_15_-0987072649055.m
| A	testsuite/data/svm_GaussianKernel_0017_15_16_-0996620794062.m
| A	testsuite/data/svm_GaussianKernel_0017_15_1_-0987072649055.m
| D	testsuite/data/svm_GaussianKernel_023_15_-0954281331585.m
| A	testsuite/data/svm_GaussianKernel_023_15_1_-0888718286876.m
| A	testsuite/data/svm_GaussianKernel_15_15_1_00600785466709.m
| A	testsuite/data/svm_GaussianKernel_30_15_1_-034632271332.m
| M	testsuite/generator/kernels.py
|  
* commit 3a1e7173a4ed0e5b466e2271ac1740fa82ae68c9
| Author: Christoph Lampert <chl@ist.ac.at>
| Date:   Tue Nov 13 10:23:30 2007 +0000
| 
|     fixed naming and type differences between get_svm and set_svm
| 
| M	src/guilib/GUIPython.cpp
|  
* commit 57e199db5471ab3364639e987ff341e0d6997252
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Nov 12 17:51:46 2007 +0000
| 
|     Primarily added constructor with Features to each kernel.
|     Testing system has been vastly expanded by this, adding new kernels and
|     their features.
|     Also cleaned up kernels' .h files and a bit .cpp files.
| 
| M	python-modular/examples/combined_features_svm.py
| M	python-modular/examples/wd_kernel.py
| M	python-modular/examples/wd_kernel_svm.py
| M	python-modular/examples/wd_kernel_svm_linadd_batch.py
| M	python-modular/examples/wds_kernel.py
| M	python-modular/testcases/kernels.py
| M	python-modular/testcases/test.py
| M	src/features/StringFeatures.i
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/AUCKernel.h
| M	src/kernel/CanberraWordKernel.cpp
| M	src/kernel/CanberraWordKernel.h
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/Chi2Kernel.i
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.cpp
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/DiagKernel.cpp
| M	src/kernel/DiagKernel.h
| M	src/kernel/DistanceKernel.cpp
| M	src/kernel/DistanceKernel.h
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/GaussianShiftKernel.cpp
| M	src/kernel/GaussianShiftKernel.h
| M	src/kernel/HammingWordKernel.cpp
| M	src/kernel/HammingWordKernel.h
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/HistogramWordKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/Kernel.i
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/KernelMachine.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearByteKernel.i
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearKernel.i
| M	src/kernel/LinearStringKernel.cpp
| M	src/kernel/LinearStringKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalAlignmentStringKernel.cpp
| M	src/kernel/LocalAlignmentStringKernel.h
| M	src/kernel/LocalityImprovedStringKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.h
| M	src/kernel/ManhattenWordKernel.cpp
| M	src/kernel/ManhattenWordKernel.h
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchStringKernel.h
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/PolyMatchWordKernel.h
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.h
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/StringKernel.i
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.i
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.i
| M	src/kernel/WordMatchKernel.cpp
| M	src/kernel/WordMatchKernel.h
| A	testsuite/data/CanberraWordKernel_17.m
| D	testsuite/data/Chi2Kernel_10.m
| A	testsuite/data/Chi2Kernel_10_12.m
| M	testsuite/data/CommWordStringKernel_False_60_0_DNA_3_2_False.m
| A	testsuite/data/ConstKernel_230.m
| A	testsuite/data/DiagKernel_230.m
| A	testsuite/data/FixedDegreeStringKernel_DNA_3_60.m
| M	testsuite/data/GaussianKernel_13.m
| A	testsuite/data/GaussianShiftKernel_1_13_2.m
| A	testsuite/data/HammingWordKernel_13_False.m
| A	testsuite/data/LinearByteKernel_DNA_60.m
| M	testsuite/data/LinearKernel_10.m
| A	testsuite/data/LinearStringKernel_DNA_60.m
| A	testsuite/data/LinearWordKernel.m
| A	testsuite/data/LocalAlignmentStringKernel_DNA_60.m
| A	testsuite/data/ManhattenWordKernel_15.m
| A	testsuite/data/PolyKernel_3_False_False.m
| A	testsuite/data/PolyKernel_3_False_True.m
| A	testsuite/data/PolyKernel_3_True_False.m
| M	testsuite/data/PolyKernel_3_True_True.m
| A	testsuite/data/PolyMatchStringKernel_DNA_3_60_False.m
| A	testsuite/data/PolyMatchStringKernel_DNA_3_60_True.m
| A	testsuite/data/PolyMatchWordKernel_3_False.m
| A	testsuite/data/PolyMatchWordKernel_3_True.m
| M	testsuite/data/SigmoidKernel_05_10_07.m
| M	testsuite/data/SigmoidKernel_11_10_13.m
| A	testsuite/data/SimpleLocalityImprovedStringKernel_DNA_5_5_7_60.m
| A	testsuite/data/SparseGaussianKernel_13.m
| A	testsuite/data/SparseLinearKernel_10.m
| A	testsuite/data/SparsePolyKernel_3_10_True_True.m
| M	testsuite/data/WeightedCommWordStringKernel_False_60_0_DNA_3_2_False.m
| D	testsuite/data/WeightedDegreePositionStringKernel_20_60_0_1_DNA_True.m
| A	testsuite/data/WeightedDegreePositionStringKernel_DNA_20_60.m
| D	testsuite/data/WeightedDegreeStringKernel_20_60_0_1_DNA_-1_False_True.m
| A	testsuite/data/WeightedDegreeStringKernel_DNA_0_20_60.m
| A	testsuite/data/WordMatchKernel_3.m
| A	testsuite/data/svm_GaussianKernel_0017_15_-0987072649055.m
| D	testsuite/data/svm_GaussianKernel_0017_15_-0990040918622.m
| A	testsuite/data/svm_GaussianKernel_023_15_-0954281331585.m
| M	testsuite/generator/fileops.py
| M	testsuite/generator/kernels.py
| M	testsuite/klist.py
|  
* commit be8108bfd1dc697d40865ff7dd08412f41fcc20f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 12 10:30:39 2007 +0000
| 
|     more %ld -> %p pointer printing fixes
| 
| M	src/features/Features.cpp
| M	src/features/RealFeatures.cpp
| M	src/features/SimpleFeatures.h
| M	src/kernel/Kernel.cpp
|  
* commit fc90b350d2f507cdcc9308b04a2cd580087f895c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 12 09:53:16 2007 +0000
| 
|     use %p to print pointers
| 
| M	src/guilib/GUIKernel.cpp
|  
* commit bb044fc8404bb7f8af83dd42b86ccbc4a82158d0
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Nov 11 00:45:48 2007 +0000
| 
|     fix
| 
| M	src/guilib/GUIKernel.cpp
|  
* commit a69241f33aa49b35d06871bcf150539a27cfa08f
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Nov 11 00:37:30 2007 +0000
| 
|     Implemented matlab interface for GaussianShift kernel.
|     (untested)
| 
| M	src/guilib/GUIKernel.cpp
|  
* commit e1616a435fac2079f0c44055ae008333e858196b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 9 10:47:49 2007 +0000
| 
|     fix Chi2 kernel / 2class label test bug reported by Christoph Lampert
| 
| M	src/features/Labels.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
|  
* commit 809cbec31d8c8391fbb8ce9953e2f26388a63029
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 9 09:27:37 2007 +0000
| 
|     - make all svms check that they indeed get a +1/-1 labeling bug reported by Sebastian Hensche - thanks!
|     - update kernel name printing / fix duplicate id, reported by Christoph Lampert
| 
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/kernel/Kernel.cpp
| M	src/lib/common.h
|  
* commit ca42feac838f415bd2b8df91bcd553902d4dbc71
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Nov 8 21:16:25 2007 +0000
| 
|     Reorganised testgenerator/test: now even less code to add for new
|     kernels (modifications due to new features pending, though).
| 
| A	python-modular/testcases/kernels.py
| M	python-modular/testcases/test.py
| D	python-modular/testcases/test_kernels.py
| M	testsuite/data/Chi2Kernel_10.m
| D	testsuite/data/CommWordStringKernel_0_False_DNA_10_3_2_False.m
| A	testsuite/data/CommWordStringKernel_False_60_0_DNA_3_2_False.m
| D	testsuite/data/FixedDegreeStringKernel_DNA_10_60_3.m
| D	testsuite/data/GaussianKernel_10_13.m
| A	testsuite/data/GaussianKernel_13.m
| A	testsuite/data/LinearKernel_10.m
| D	testsuite/data/LinearKernel_10_10.m
| D	testsuite/data/LinearStringKernel_DNA_10_10_60_True.m
| D	testsuite/data/LocalAlignmentStringKernel_DNA_10_60.m
| D	testsuite/data/LocalityImprovedStringKernel_51_5_7_DNA_10_60.m
| D	testsuite/data/PolyKernel_10_False_3_False.m
| D	testsuite/data/PolyKernel_10_False_3_True.m
| D	testsuite/data/PolyKernel_10_True_3_False.m
| D	testsuite/data/PolyKernel_10_True_3_True.m
| A	testsuite/data/PolyKernel_3_True_True.m
| D	testsuite/data/PolyMatchStringKernel_3_DNA_10_60_True_True.m
| M	testsuite/data/SigmoidKernel_05_10_07.m
| M	testsuite/data/SigmoidKernel_11_10_13.m
| D	testsuite/data/SimpleLocalityImprovedStringKernel_5_5_7_DNA_10_60.m
| D	testsuite/data/WeightedCommWordStringKernel_0_False_DNA_10_3_2_False.m
| A	testsuite/data/WeightedCommWordStringKernel_False_60_0_DNA_3_2_False.m
| D	testsuite/data/WeightedDegreePositionStringKernel_20_10_60_0_True_DNA_1.m
| A	testsuite/data/WeightedDegreePositionStringKernel_20_60_0_1_DNA_True.m
| A	testsuite/data/WeightedDegreeStringKernel_20_60_0_1_DNA_-1_False_True.m
| D	testsuite/data/WeightedDegreeStringKernel_20_DNA_10_60_True_0_-1_1_False.m
| A	testsuite/data/svm_GaussianKernel_0017_15_-0990040918622.m
| D	testsuite/data/svm_GaussianKernel_10_10_15.m
| D	testsuite/data/svm_GaussianKernel_10_1_15.m
| M	testsuite/generator/__init__.py
| A	testsuite/generator/fileops.py
| M	testsuite/generator/kernels.py
| A	testsuite/klist.py
|  
* commit 71f96a085a96c832a9c1f84f2f6287595f2025dc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 7 15:09:51 2007 +0000
| 
|     make test py ex.
| 
| M	python-modular/testcases/test.py
|  
* commit f48fa0a63308490a1061ebb6b7e00154257262ea
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Nov 7 09:32:56 2007 +0000
| 
|     Preliminarily added some testing for SparsePoly and SparseGaussian.
| 
| M	testsuite/data/LocalityImprovedStringKernel_51_5_7_DNA_10_60.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit c48f16099af8dac3ff49ba07c026e5a5665f927b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Nov 7 09:26:51 2007 +0000
| 
|     Added testing for SimpleLocalityImprovedStringKernel.
| 
| M	python-modular/testcases/test_kernels.py
| M	testsuite/data/LocalityImprovedStringKernel_51_5_7_DNA_10_60.m
| A	testsuite/data/SimpleLocalityImprovedStringKernel_5_5_7_DNA_10_60.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit 6bd5a6842dae4dd869d318c777d585490409419f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Nov 7 09:12:09 2007 +0000
| 
|     Added testing for PolyMatchStringKernel.
| 
| M	python-modular/testcases/test_kernels.py
| M	testsuite/data/LocalityImprovedStringKernel_51_5_7_DNA_10_60.m
| A	testsuite/data/PolyMatchStringKernel_3_DNA_10_60_True_True.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit 6bf5725f14c05d2b6e555fbdeee37f641d1de156
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Nov 7 09:02:39 2007 +0000
| 
|     Added testing for LocalAlignmentStringKernel.
|     Preliminarily added some testing for LinearWord.
| 
| M	python-modular/testcases/test.py
| M	python-modular/testcases/test_kernels.py
| A	testsuite/data/FixedDegreeStringKernel_DNA_10_60_3.m
| A	testsuite/data/LinearStringKernel_DNA_10_10_60_True.m
| A	testsuite/data/LocalAlignmentStringKernel_DNA_10_60.m
| A	testsuite/data/LocalityImprovedStringKernel_51_5_7_DNA_10_60.m
| A	testsuite/data/WeightedCommWordStringKernel_0_False_DNA_10_3_2_False.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit 1d752afaad339e72183b55fc6668ac7aaa9e60d6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 6 20:53:21 2007 +0000
| 
|     Added testing for LinearStringKernel.
| 
| M	python-modular/testcases/test_kernels.py
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit 0add4e3cb29d79820b481213e0ea12067816bdfb
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 6 20:45:00 2007 +0000
| 
|     Added testing for WeightedCommWordStringKernel.
| 
| M	python-modular/testcases/test_kernels.py
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit 76fd12f3299ca807e4510cc6695df97b0fba8a91
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 6 20:29:23 2007 +0000
| 
|     Added testing for FixedDegreeStringKernel.
| 
| M	python-modular/testcases/test_kernels.py
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit a07c145860ac37f7cc0b59dcdb5a47988e185b2b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 6 17:47:21 2007 +0000
| 
|     Added function to clean output dir before it is filled with fresh
|     testdata files.
| 
| M	testsuite/generator/__init__.py
|  
* commit 156650040ec04a96aed1056ded3a40d25476040d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 6 17:33:11 2007 +0000
| 
|     Unsuccesfully tried to establish tests for LocalityImprovedString and
|     SparseLinear kernels.
| 
| M	python-modular/testcases/test_kernels.py
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit 299c9a99b940ddc017d5cee4364c642e3cda8e64
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 6 15:55:34 2007 +0000
| 
|     Changed calling of C++ constructors
| 
| M	python-modular/testcases/test_kernels.py
| D	testsuite/data/WeightedDegreePositionStringKernel_0_True_20_DNA_10_60_1.m
| A	testsuite/data/WeightedDegreePositionStringKernel_20_10_60_0_True_DNA_1.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit 62c8f0ebc57d5fde5803e3ca5b2c74bca6b73a7b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 6 09:46:41 2007 +0000
| 
|     Implemented a multiplier to generate different labels for svm kernels.
| 
| M	testsuite/data/CommWordStringKernel_0_False_DNA_10_3_2_False.m
| M	testsuite/data/WeightedDegreePositionStringKernel_0_True_20_DNA_10_60_1.m
| M	testsuite/data/WeightedDegreeStringKernel_20_DNA_10_60_True_0_-1_1_False.m
| A	testsuite/data/svm_GaussianKernel_10_10_15.m
| D	testsuite/data/svm_GaussianKernel_10_15.m
| A	testsuite/data/svm_GaussianKernel_10_1_15.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit 00560f5e26a1f1f4209ab8831434812a33c95d90
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Nov 5 17:19:38 2007 +0000
| 
|     Enlargened testing of svm_GaussianKernel and slightly optimised writing
|     of testdata.
| 
| M	python-modular/testcases/test_kernels.py
| M	testsuite/data/Chi2Kernel_10.m
| M	testsuite/data/CommWordStringKernel_0_False_DNA_10_3_2_False.m
| M	testsuite/data/GaussianKernel_10_13.m
| M	testsuite/data/LinearKernel_10_10.m
| M	testsuite/data/PolyKernel_10_False_3_False.m
| M	testsuite/data/PolyKernel_10_False_3_True.m
| M	testsuite/data/PolyKernel_10_True_3_False.m
| M	testsuite/data/PolyKernel_10_True_3_True.m
| M	testsuite/data/SigmoidKernel_05_10_07.m
| M	testsuite/data/SigmoidKernel_11_10_13.m
| M	testsuite/data/WeightedDegreePositionStringKernel_0_True_20_DNA_10_60_1.m
| M	testsuite/data/WeightedDegreeStringKernel_20_DNA_10_60_True_0_-1_1_False.m
| M	testsuite/data/svm_GaussianKernel_10_15.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit ab243b194edf7a5c7b32b3f5c25573d4013245b8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Nov 5 14:07:45 2007 +0000
| 
|     Aligned parameters used in testsuite with C++-API.
| 
| M	python-modular/testcases/test_kernels.py
| A	testsuite/data/CommWordStringKernel_0_False_DNA_10_3_2_False.m
| D	testsuite/data/CommWordStringKernel_DNA_False_3_0.m
| D	testsuite/data/LinearKernel_10.m
| A	testsuite/data/LinearKernel_10_10.m
| A	testsuite/data/PolyKernel_10_False_3_False.m
| A	testsuite/data/PolyKernel_10_False_3_True.m
| A	testsuite/data/PolyKernel_10_True_3_False.m
| A	testsuite/data/PolyKernel_10_True_3_True.m
| D	testsuite/data/PolyKernel_False_10_False_3.m
| D	testsuite/data/PolyKernel_False_10_True_3.m
| D	testsuite/data/PolyKernel_True_10_False_3.m
| D	testsuite/data/PolyKernel_True_10_True_3.m
| M	testsuite/data/SigmoidKernel_05_10_07.m
| M	testsuite/data/SigmoidKernel_11_10_13.m
| A	testsuite/data/WeightedDegreePositionStringKernel_0_True_20_DNA_10_60_1.m
| D	testsuite/data/WeightedDegreePositionStringKernel_DNA_60_20.m
| A	testsuite/data/WeightedDegreeStringKernel_20_DNA_10_60_True_0_-1_1_False.m
| D	testsuite/data/WeightedDegreeStringKernel_DNA_60_20.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit 12d5b7d0fa644bc601cd7efa16f7c25262dacb96
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 4 20:11:49 2007 +0000
| 
|     Tried to implement tests for LocalityImproved, HammingWord, ManhattanWord and
|     realised that a) interface to Shogun incomplete, b) testsuite needed
|     some more spanking
| 
| M	python-modular/testcases/test.py
| M	testsuite/data/CommWordStringKernel_DNA_False_3_0.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit aaae03d51c6cdc334843b0fdab8c1f693283fc7c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 4 16:36:28 2007 +0000
| 
|     optimised 'functionname' away, reduced 'kernelname' to 'name' (wonder if
|     that will comply with matlab and others)
| 
| M	python-modular/testcases/test.py
| M	python-modular/testcases/test_kernels.py
| M	testsuite/data/Chi2Kernel_10.m
| M	testsuite/data/CommWordStringKernel_DNA_False_3_0.m
| M	testsuite/data/GaussianKernel_10_13.m
| M	testsuite/data/LinearKernel_10.m
| M	testsuite/data/PolyKernel_False_10_False_3.m
| M	testsuite/data/PolyKernel_False_10_True_3.m
| M	testsuite/data/PolyKernel_True_10_False_3.m
| M	testsuite/data/PolyKernel_True_10_True_3.m
| M	testsuite/data/SigmoidKernel_05_10_07.m
| M	testsuite/data/SigmoidKernel_11_10_13.m
| M	testsuite/data/WeightedDegreePositionStringKernel_DNA_60_20.m
| M	testsuite/data/WeightedDegreeStringKernel_DNA_60_20.m
| M	testsuite/data/svm_GaussianKernel_10_15.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit bb35280826c11784473b99de3163252d058c9bcb
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 4 15:52:03 2007 +0000
| 
|     rewrote test code for python-modular.
|     ATTENTION: previous upgrade of shogun seems to have an influence on the
|     PolyKernel. different data is generated and tests fail where inhom is
|     false: !(e-2<e-6).
| 
| D	python-modular/testcases/read_mfile.py
| M	python-modular/testcases/test.py
| M	python-modular/testcases/test_kernels.py
| M	testsuite/data/PolyKernel_False_10_False_3.m
| M	testsuite/data/PolyKernel_False_10_True_3.m
| M	testsuite/data/PolyKernel_True_10_False_3.m
| M	testsuite/data/PolyKernel_True_10_True_3.m
| M	testsuite/data/svm_GaussianKernel_10_15.m
| M	testsuite/generator/__init__.py
|  
* commit ae8e157b5e457da79ef511adb4436d09670270b6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 3 21:34:32 2007 +0000
| 
|     argh, fix C C++ mixup on make depend / fixes python-modular build
| 
| M	src/Makefile
|  
* commit ac72d23978513a72a81ec669c41edfe2c9ecc441
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 3 06:40:15 2007 +0000
| 
|     Use gcc -MM now to generate dependencies (and fall back to makedepend if gcc
|     is not available). This has the big advantage that we generate dependencies
|     only for non-system header files and that gcc knows all the preprocessor
|     macros and we don't need makedepend anymore :)
|     
|     Finally enable batch computation/linadd in kernelmachines by default
| 
| M	src/Makefile
| M	src/configure
| M	src/guilib/GUIClassifier.cpp
| M	src/kernel/KernelMachine.cpp
|  
* commit 851de7e89c196ac11d78511970c41cfe6c6cfdb7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 2 08:29:49 2007 +0000
| 
|     - check for existance of log2 in a more principled way + add fall back
|     - add support for Interix based on patches provided by S V N Vishwanathan
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/ssl.cpp
| M	src/configure
| M	src/lib/Mathematics.h
| M	src/lib/Signal.cpp
| M	src/regression/svr/SVR_light.cpp
|  
* commit 4a995e934f4cd57af29e80cdbb7caf299bcd97f2
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Nov 1 17:16:12 2007 +0000
| 
|     testdata generator revisited.
| 
| M	python-modular/testcases/test.py
| M	python-modular/testcases/test_kernels.py
| M	testsuite/data/Chi2Kernel_10.m
| M	testsuite/data/CommWordStringKernel_DNA_False_3_0.m
| M	testsuite/data/GaussianKernel_10_13.m
| A	testsuite/data/LinearKernel_10.m
| D	testsuite/data/LinearKernel_True.m
| M	testsuite/data/PolyKernel_False_10_False_3.m
| M	testsuite/data/PolyKernel_False_10_True_3.m
| M	testsuite/data/PolyKernel_True_10_False_3.m
| M	testsuite/data/PolyKernel_True_10_True_3.m
| M	testsuite/data/SigmoidKernel_05_10_07.m
| M	testsuite/data/SigmoidKernel_11_10_13.m
| M	testsuite/data/WeightedDegreePositionStringKernel_DNA_60_20.m
| M	testsuite/data/WeightedDegreeStringKernel_DNA_60_20.m
| M	testsuite/data/svm_GaussianKernel_10_15.m
| A	testsuite/generate_testdata.py
| A	testsuite/generator/__init__.py
| D	testsuite/generator/generate_testcases.py
| A	testsuite/generator/kernels.py
| D	testsuite/generator/m_print.py
|  
* commit ef95312d52217b1c3c3f9ec1801ab32534877279
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Oct 30 20:33:50 2007 +0000
| 
|     as it turned out, failed testing of a CommonWordString kernel with
|     matlab was _NOT_ due to an error in guilib/ or features/, the error was
|     in the matlab code which tried to convert the training features twice,
|     instead of using the test features. *sigh*
| 
| M	matlab/testcases/test_cws_kernel.m
| M	src/features/Alphabet.h
|  
* commit 069b4bb7bc34efd56503b85d8dcd8340296a1408
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Oct 30 17:39:29 2007 +0000
| 
|     winged something in matlab that succeeds test for WeightedDegreePositionString
| 
| M	matlab/testcases/test_wds_kernel.m
|  
* commit 1c55f5ae4a3aaf195c8a2c638c59da68013f84d8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Oct 30 11:18:06 2007 +0000
| 
|     blob of things in the regression tests; sort of first getting in touch
|     with it and finding bugs.
|     mainly moved generator and generated mfiles into testsuite/ and
|     added/implemented some tests for matlab. some tests still do not run
|     through, though.
| 
| M	matlab/testcases/run.sh
| A	matlab/testcases/test_cws_kernel.m
| M	matlab/testcases/test_kernels.m
| M	matlab/testcases/test_linear_kernel.m
| M	matlab/testcases/test_matlab.m
| M	matlab/testcases/test_poly_kernel.m
| A	matlab/testcases/test_svm.m
| A	matlab/testcases/test_wd_kernel.m
| D	matlab/testcases/test_wdchar_kernel.m
| A	matlab/testcases/test_wds_kernel.m
| D	python-modular/test_case_generator/generate_testcases.py
| D	python-modular/test_case_generator/m_print.py
| D	python-modular/testcases/mfiles/Chi2Kernel_10.m
| D	python-modular/testcases/mfiles/CommWordStringKernel_DNA_False_3_0.m
| D	python-modular/testcases/mfiles/GaussianKernel_10_13.m
| D	python-modular/testcases/mfiles/LinearKernel_False.m
| D	python-modular/testcases/mfiles/LinearKernel_True.m
| D	python-modular/testcases/mfiles/PolyKernel_False_10_False_3.m
| D	python-modular/testcases/mfiles/PolyKernel_False_10_True_3.m
| D	python-modular/testcases/mfiles/PolyKernel_True_10_False_3.m
| D	python-modular/testcases/mfiles/PolyKernel_True_10_True_3.m
| D	python-modular/testcases/mfiles/SigmoidKernel_05_10_07.m
| D	python-modular/testcases/mfiles/SigmoidKernel_11_10_13.m
| D	python-modular/testcases/mfiles/WeightedDegreePositionStringKernel_DNA_60_20.m
| D	python-modular/testcases/mfiles/WeightedDegreeStringKernel_DNA_60_20.m
| D	python-modular/testcases/mfiles/svm_GaussianKernel_10_15.m
| M	python-modular/testcases/run.sh
| M	python-modular/testcases/test_kernels.py
| M	src/features/Alphabet.h
| A	testsuite/data/Chi2Kernel_10.m
| A	testsuite/data/CommWordStringKernel_DNA_False_3_0.m
| A	testsuite/data/GaussianKernel_10_13.m
| A	testsuite/data/LinearKernel_True.m
| A	testsuite/data/PolyKernel_False_10_False_3.m
| A	testsuite/data/PolyKernel_False_10_True_3.m
| A	testsuite/data/PolyKernel_True_10_False_3.m
| A	testsuite/data/PolyKernel_True_10_True_3.m
| A	testsuite/data/SigmoidKernel_05_10_07.m
| A	testsuite/data/SigmoidKernel_11_10_13.m
| A	testsuite/data/WeightedDegreePositionStringKernel_DNA_60_20.m
| A	testsuite/data/WeightedDegreeStringKernel_DNA_60_20.m
| A	testsuite/data/svm_GaussianKernel_10_15.m
| A	testsuite/generator/generate_testcases.py
| A	testsuite/generator/m_print.py
|  
* commit 62017fa090019c31e0d6ca1b209b037175a816a8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Oct 30 11:14:56 2007 +0000
| 
|     added display_vector for long long int
| 
| M	src/lib/Mathematics.cpp
|  
* commit 230be12b06e50519d60be42ad912c6193afc240e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 29 17:04:46 2007 +0000
| 
|     megabytes -> INT
| 
| M	src/kernel/CanberraWordKernel.cpp
| M	src/kernel/CanberraWordKernel.h
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/DiagKernel.cpp
| M	src/kernel/DiagKernel.h
| M	src/kernel/DistanceKernel.cpp
| M	src/kernel/DistanceKernel.h
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/HammingWordKernel.cpp
| M	src/kernel/HammingWordKernel.h
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/HistogramWordKernel.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalityImprovedStringKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.h
| M	src/kernel/ManhattenWordKernel.cpp
| M	src/kernel/ManhattenWordKernel.h
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/PolyMatchWordKernel.h
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.h
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/kernel/WordMatchKernel.cpp
| M	src/kernel/WordMatchKernel.h
|  
* commit e6ca5a2a651b16f6026d65025dfa9dde58aae4c6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 29 15:10:35 2007 +0000
| 
|     make size the last argument with default=10
| 
| M	src/configure
| M	src/kernel/Kernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
|  
* commit 2ae7a3f4b6d3e343f0eac7f2cffb3aac49d8b5c8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 27 09:52:17 2007 +0000
| 
|     needed to add include of GCC header files on Debian (pre)lenny amd64 to make it compile
| 
| M	src/configure
|  
* commit 14c3fe2893d4ada5eab6f477d075a7433708d554
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 27 08:29:20 2007 +0000
| 
|     little bugfix: extra includes should be appended by '-I', not '-L'
| 
| M	src/configure
|  
* commit 27746b003f77c2c098cfe8ab0123cc7abc9b412a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 26 04:46:04 2007 +0000
| 
|     avoid a couple of (useless) memory init's / copies
| 
| M	src/classifier/svm/SVMOcas.cpp
|  
* commit 46c3d8bd75fe9e3482a2727cface4ffd60e1e3e9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 25 19:46:42 2007 +0000
| 
|     finally - ocas works
| 
| M	matlab/examples/liblinear.m
| M	matlab/examples/svmocas.m
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMOcas.h
| M	src/classifier/svm/libocas.cpp
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUICommands.h
|  
* commit 96176eac24be81e877447d45d1032512e1850ef1
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Thu Oct 25 18:46:22 2007 +0000
| 
|     addgin debug code
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/libocas.cpp
|  
* commit 6ad9706eb634fadfb0ec4e3156ecb6f17463e02f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 25 16:44:00 2007 +0000
| 
|     matlab testcases call test_matlab
| 
| M	matlab/examples/svmocas.m
| M	matlab/testcases/run.sh
| M	matlab/testcases/test_kernels.m
| A	matlab/testcases/test_matlab.m
| D	matlab/testcases/test_octave.m
|  
* commit c68b328b937709501f092bbed7c38b2d0efebd1c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 25 15:02:20 2007 +0000
| 
|     add mr. kodeaffe to list of authors + minor code edits we spotted while talking about the source
| 
| M	src/.authors
| M	src/base/SGObject.h
| M	src/classifier/LDA.h
| M	src/classifier/LinearClassifier.h
| M	src/lib/Mathematics.h
| M	src/preproc/NormOne.cpp
|  
* commit f8de5779c97472e8798ba04afc9d6c1f695ebf28
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 24 21:39:12 2007 +0000
| 
|     one bug less...
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMOcas.h
|  
* commit fd6e4871e0e9522cb668d20a878da68268a78c8d
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Wed Oct 24 17:56:10 2007 +0000
| 
|     fixed some of the bugs
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/features/SparseFeatures.h
|  
* commit bdb709f53a9280151772a824e43c1b3825b37f7f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 24 17:20:14 2007 +0000
| 
|     debugging ocas
| 
| A	matlab/examples/svmocas.m
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMOcas.h
| M	src/classifier/svm/libocas.cpp
| M	src/classifier/svm/libocas.h
| M	src/classifier/svm/libocas_common.h
| M	src/classifier/svm/qpssvmlib.cpp
| M	src/classifier/svm/qpssvmlib.h
| M	src/features/SparseFeatures.h
| M	src/lib/io.h
|  
* commit 84fd84724375196a7babd31c9bc00439ec23c2cb
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Oct 24 16:50:55 2007 +0000
| 
| M	src/lib/common.h
|  
* commit ce532418dd3ea795779983086effd8ee71d34ad0
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Oct 24 16:30:23 2007 +0000
| 
|     some timing routines and speedups for DynProg.
| 
| M	src/lib/common.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit fa0001bcd464de50e8631fd1b23085551b953825
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 23 19:13:51 2007 +0000
| 
|     start integration of libocas
|     (avoiding code duplication/resyncs between ocas/shogun)
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMOcas.h
| A	src/classifier/svm/libocas.cpp
| A	src/classifier/svm/libocas.h
| A	src/classifier/svm/libocas_common.h
| M	src/classifier/svm/qpssvmlib.cpp
| M	src/classifier/svm/qpssvmlib.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Mathematics.h
|  
* commit 92703fd50ca577a9cf0f3acc7988184e372028e4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 23 16:02:07 2007 +0000
| 
|     fix example as reported by jens auer
| 
| M	python-modular/examples/stringfeatures.py
|  
* commit 770099be2f45f498afe482dcd6a61596c941e3a6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 22 20:53:35 2007 +0000
| 
|     compile fix:
|     	static classes cannot access dynamic class members,
|     	thus make number of threads an argument to paraaaallel qsort
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/lib/Mathematics.h
| M	src/lib/common.h
|  
* commit 194171524357b1e35f2311c04b1238a058ac488b
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Oct 22 17:23:44 2007 +0000
| 
|     added the GaussianShiftKernel. Could not test it.
|     Hope it works.
| 
| A	src/kernel/GaussianShiftKernel.cpp
| A	src/kernel/GaussianShiftKernel.h
| A	src/kernel/GaussianShiftKernel.i
| M	src/kernel/Kernel.i
|  
* commit 55d0200bbc0764ad8892883abad5d185cf2a64ec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 21 19:43:07 2007 +0000
| 
|     dysfunctional inital merge-try of SVMOcas
| 
| M	src/classifier/SparseLinearClassifier.i
| A	src/classifier/svm/SVMOcas.cpp
| A	src/classifier/svm/SVMOcas.h
| A	src/classifier/svm/SVMOcas.i
| D	src/classifier/svm/SVMPerf.cpp
| D	src/classifier/svm/SVMPerf.h
| D	src/classifier/svm/SVMPerf.i
| A	src/classifier/svm/qpssvmlib.cpp
| A	src/classifier/svm/qpssvmlib.h
| M	src/features/SparseFeatures.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/common.h
|  
* commit da72e35a9fb962a54b3bb99f2dfc93cf8531f875
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Thu Oct 18 14:13:00 2007 +0000
| 
|     added support for faster gram addition
| 
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/guilib/GUIFeatures.h
| M	src/kernel/MindyGramKernel.cpp
|  
* commit b99168dac94aa737b315de4044d02e02c26436b5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 18 05:11:36 2007 +0000
| 
|     updated test used to detect recent memleak
| 
| M	python-modular/examples/check_commwordkernel_memleak.py
|  
* commit c990393b179a0f970fd1ecab900c07fa3846cdca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 18 03:39:51 2007 +0000
| 
|     fix a major memory leak (occured for all functions returning arrays to python)
|     	we still need some interface polishing here, i.e.
|     
|     	1. the array is malloc'd in the python typemaps
|     	2. the C++ functions fill in content
|     
|     	or
|     
|     	1. the C++ functions just return pointers to objects
|     	2. in the python typemaps the array is malloc'd and content is copied from
|     	the C++ functions
| 
| M	src/lib/python_typemaps.i
|  
* commit b67725ed7973e5b9ae1203c8f883cf5553077c24
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 17 17:10:45 2007 +0000
| 
|     forgotten makefile
| 
| A	libshogun/examples/Makefile
|  
* commit e6fb239d9c751976c46c6399ef46bb614f43e6f8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 17 17:10:27 2007 +0000
| 
|     add example for shogun's new library interface - libshogun
| 
| A	libshogun/examples/rbf_svm.cpp
| M	src/Makefile
| M	src/configure
|  
* commit 6a175f93fe2c9555904db5c667f088a957a34a85
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 14 14:03:47 2007 +0000
| 
|     add memleak test script
| 
| A	python-modular/examples/check_commwordkernel_memleak.py
|  
* commit fd92e196b0f90c6f7265bfa0e339b38f1ef59f09
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 14 08:13:10 2007 +0000
| 
|     - fix a memory leak in python modular interface (occurring with any kernel)
|     - remove some debug code
| 
| M	src/features/Features.cpp
| M	src/features/StringFeatures.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/Kernel.cpp
|  
* commit 520064f051d2fa4fb93b9cf661f5b81e1692f2bc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 10 17:47:26 2007 +0000
| 
|     Preparing for new Release shogun_0.4.3
| 
| M	R/Makefile
| M	R/sg/DESCRIPTION
|  
* commit 20c522823e80014b52e572bd358eefa8f83d25cf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 10 17:46:51 2007 +0000
| 
|     prepare for release 0.4.3
| 
| M	src/NEWS
|  
* commit 4ec12ed18b09764c49f012cc8b1bf12024eb31ee
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 9 14:07:48 2007 +0000
| 
|     add insertion sort
| 
| M	src/lib/Mathematics.h
|  
* commit bcbc51a83e18820abd0ff9065a48b6f3d4700746
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Oct 4 13:49:36 2007 +0000
| 
|     tests for first classifier encluded
| 
| M	python-modular/test_case_generator/generate_testcases.py
| M	python-modular/test_case_generator/m_print.py
| A	python-modular/testcases/mfiles/svm_GaussianKernel_10_15.m
| M	python-modular/testcases/test_kernels.py
|  
* commit 1c90c84508229e586390095c12cf8ff182ebf5aa
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Oct 4 12:52:47 2007 +0000
| 
| M	python-modular/test_case_generator/generate_testcases.py
| M	python-modular/testcases/mfiles/Chi2Kernel_10.m
| M	python-modular/testcases/mfiles/CommWordStringKernel_DNA_False_3_0.m
| M	python-modular/testcases/mfiles/LinearKernel_False.m
| M	python-modular/testcases/mfiles/LinearKernel_True.m
| M	python-modular/testcases/mfiles/PolyKernel_False_10_False_3.m
| M	python-modular/testcases/mfiles/PolyKernel_False_10_True_3.m
| M	python-modular/testcases/mfiles/PolyKernel_True_10_False_3.m
| M	python-modular/testcases/mfiles/PolyKernel_True_10_True_3.m
| M	python-modular/testcases/mfiles/SigmoidKernel_05_10_07.m
| M	python-modular/testcases/mfiles/SigmoidKernel_11_10_13.m
| M	python-modular/testcases/mfiles/WeightedDegreePositionStringKernel_DNA_60_20.m
| M	python-modular/testcases/mfiles/WeightedDegreeStringKernel_DNA_60_20.m
|  
* commit 7fd2c8f4be98c02b1c7fea20a2518e71f5cdb1c1
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Oct 4 10:34:46 2007 +0000
| 
| M	python-modular/test_case_generator/generate_testcases.py
| M	python-modular/testcases/mfiles/GaussianKernel_10_13.m
|  
* commit 10049d5988f0fa6118b59421c51e20589326598b
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Oct 4 10:03:29 2007 +0000
| 
| M	python-modular/test_case_generator/generate_testcases.py
| M	python-modular/testcases/mfiles/WeightedDegreePositionStringKernel_DNA_60_20.m
| M	python-modular/testcases/mfiles/WeightedDegreeStringKernel_DNA_60_20.m
|  
* commit b7a27efa7fc95413b2b1fe89419f1bbd3bab8f4b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 4 06:38:11 2007 +0000
| 
|     code cleanup in obtaining w - no function change
| 
| M	src/lib/Trie.cpp
|  
* commit fd23d6f1ed347a5c848421ad38d8ac0831ef238a
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Oct 3 09:54:54 2007 +0000
| 
| M	python-modular/test_case_generator/generate_testcases.py
|  
* commit e06ddd4d3fd43b9075e36d644c2e78797dc157b0
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Oct 3 09:20:30 2007 +0000
| 
| M	python-modular/test_case_generator/generate_testcases.py
| M	python-modular/testcases/mfiles/WeightedDegreePositionStringKernel_DNA_60_20.m
| A	python-modular/testcases/mfiles/WeightedDegreeStringKernel_DNA_60_20.m
| M	python-modular/testcases/test_kernels.py
|  
* commit 7e60ed596098690c85236b320b8ec570fb9b3044
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Oct 2 16:15:06 2007 +0000
| 
| A	python-modular/testcases/mfiles/CommWordStringKernel_DNA_False_3_0.m
|  
* commit ab9455da13f688870cb707c9f296bde9eff14ff8
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Oct 2 16:14:19 2007 +0000
| 
| M	python-modular/test_case_generator/generate_testcases.py
| M	python-modular/testcases/mfiles/Chi2Kernel_10.m
| M	python-modular/testcases/mfiles/GaussianKernel_10_13.m
| M	python-modular/testcases/mfiles/LinearKernel_False.m
| M	python-modular/testcases/mfiles/LinearKernel_True.m
| M	python-modular/testcases/mfiles/PolyKernel_False_10_False_3.m
| M	python-modular/testcases/mfiles/PolyKernel_False_10_True_3.m
| M	python-modular/testcases/mfiles/PolyKernel_True_10_False_3.m
| M	python-modular/testcases/mfiles/PolyKernel_True_10_True_3.m
| M	python-modular/testcases/mfiles/SigmoidKernel_05_10_07.m
| M	python-modular/testcases/mfiles/SigmoidKernel_11_10_13.m
| M	python-modular/testcases/mfiles/WeightedDegreePositionStringKernel_DNA_60_20.m
|  
* commit eda64d7cdd2392a698030ae9e78ea0bfc33ebc43
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Oct 2 15:53:41 2007 +0000
| 
| M	python-modular/test_case_generator/generate_testcases.py
| M	python-modular/testcases/mfiles/Chi2Kernel_10.m
| M	python-modular/testcases/mfiles/GaussianKernel_10_13.m
| M	python-modular/testcases/mfiles/LinearKernel_False.m
| M	python-modular/testcases/mfiles/LinearKernel_True.m
| M	python-modular/testcases/mfiles/PolyKernel_False_10_False_3.m
| M	python-modular/testcases/mfiles/PolyKernel_False_10_True_3.m
| M	python-modular/testcases/mfiles/PolyKernel_True_10_False_3.m
| M	python-modular/testcases/mfiles/PolyKernel_True_10_True_3.m
| M	python-modular/testcases/mfiles/SigmoidKernel_05_10_07.m
| M	python-modular/testcases/mfiles/SigmoidKernel_11_10_13.m
| M	python-modular/testcases/mfiles/WeightedDegreePositionStringKernel_DNA_60_20.m
| M	python-modular/testcases/test_kernels.py
|  
* commit df0a267d52be019713a224f61ea752e59716e5eb
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Oct 2 15:27:30 2007 +0000
| 
|     test for CommWordStringKernel added
| 
| M	python-modular/test_case_generator/generate_testcases.py
| M	python-modular/test_case_generator/m_print.py
|  
* commit d4a5dda3217ea7aafb8e7da2d6e7a0fe31e1d686
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 28 16:14:20 2007 +0000
| 
|     fix warnings
| 
| M	src/features/Alphabet.cpp
|  
* commit 07fcb82712a6b6ba8d242b4a178995ea76a7d322
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 28 16:00:57 2007 +0000
| 
|     * allow building with custom cc settings and add option to disable cpu detection
|     * adjust R build system
|     * fix weighted commword kernel (normalization was wrong due to change in
|     		commword kernel) and add support for sliding window init
| 
| M	R/Makefile
| D	R/Makefile.sed
| A	python-modular/examples/spectrum_kernel.py
| A	python-modular/examples/weighted_spectrum_kernel.py
| M	src/configure
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
|  
* commit 27b33bd0d669d7b6039a2b0071973a02b33e728a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 25 19:57:30 2007 +0000
| 
|     - this should fix a boundary bug in poim computation
|     - compile fix when cplex is available
| 
| M	src/classifier/SubGradientLPM.cpp
| M	src/lib/Trie.cpp
|  
* commit 2c549df9dd0c26bb5f2810d3f68156f07239a7cf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 19 22:12:16 2007 +0000
| 
|     for future releases allow creating packages from releases
| 
| M	Makefile
|  
* commit 9b17eb4192a4102b584002831a3af7a758ec40f5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 19 20:16:27 2007 +0000
| 
|     add version string on release
| 
| M	Makefile
|  
* commit a0b3721c0c89314bbe3bbc6ad644309cdc6b9b26
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 19 19:28:16 2007 +0000
| 
|     Preparing for new Release shogun_0.4.2
| 
| M	Makefile
| M	R/Makefile
|  
* commit 2642d59d576424e6545e3a4c89d9f13d8c7e94f0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 19 19:15:51 2007 +0000
| 
|     keep top level makefile, to allow later package building
| 
| M	Makefile
|  
* commit 56f44c2db52fdf2a59229fe73a64992912b86a9c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 19 19:10:15 2007 +0000
| 
|     Preparing for new Release shogun_0.4.2
| 
| M	Makefile
|  
* commit 0526c141b4b0b81c519ce6dc689135b81f4292db
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 19 19:04:36 2007 +0000
| 
|     Preparing for new Release shogun_0.4.2
| 
| M	Makefile
|  
* commit 43b8eefcbe0c0ca732266fd11caf25ee54f90fc6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 19 19:02:41 2007 +0000
| 
|     compile fixes for R/python-modular/python
| 
| M	Makefile
| M	src/gui/R.cpp
| M	src/guilib/GUIR.cpp
| M	src/kernel/Kernel.cpp
| M	src/lib/Mathematics.h
| M	src/lib/io.cpp
|  
* commit 5618e785a9d0da5796ed111828204c64ac14a47c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 19 18:28:07 2007 +0000
| 
|     fix final step in release creation
| 
| M	Makefile
|  
* commit 6f4c0e855bf7e8a341638681ca3eac52a47ac365
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 19 18:26:46 2007 +0000
| 
|     Preparing for new Release shogun_0.4.2
| 
| M	src/ChangeLog
|  
* commit 60994d387f4ab3b37f85b99e82a9f6e44ff4ef2c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 19 18:25:47 2007 +0000
| 
|     - make svn-tag-release now does a whole release (just make sure src/NEWS is updated)
|     - minor clustering fixes
| 
| M	Makefile
| M	R/sg/DESCRIPTION
| M	matlab/examples/cluster_hierarchical.m
| M	src/NEWS
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/KMeans.cpp
| M	src/lib/common.h
|  
* commit 135012fe2a8280d020869a5db4255da5ff881749
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 13 16:37:20 2007 +0000
| 
|     hierarchical clustering works now
| 
| M	matlab/examples/cluster_hierarchical.m
| M	src/classifier/KNN.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/Hierarchical.h
| M	src/distance/Chebyshew.cpp
| M	src/distance/Distance.h
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUICommands.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/lib/Mathematics.h
| M	src/structure/DynProg.cpp
|  
* commit ef77211969ae1cc002377f3b7aafeef2e9041900
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 12 15:36:18 2007 +0000
| 
|     still debugging hierarchical clustering
| 
| M	matlab/examples/cluster_hierarchical.m
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/Hierarchical.h
| M	src/distance/NormSquaredDistance.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Mathematics.h
|  
* commit 44e5ad0e20b9d5ccc62254381f692f8b08ab2227
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 12 10:22:21 2007 +0000
| 
|     add aggregative single linkage hierarchical clustering (to be debugged)
| 
| A	matlab/examples/cluster_hierarchical.m
| M	src/clustering/Clustering.i
| A	src/clustering/Hierarchical.cpp
| A	src/clustering/Hierarchical.h
| A	src/clustering/Hierarchical.i
| M	src/clustering/KMeans.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Mathematics.h
| M	src/lib/common.h
|  
* commit 114758fd8475d8d996a3758e1a3ccbc11ae7d0eb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 11 10:31:17 2007 +0000
| 
|     fix clustering and random number generation for INT/DREAL
| 
| M	matlab/examples/cluster_kmeans.m
| M	src/classifier/KNN.h
| M	src/clustering/KMeans.cpp
| M	src/clustering/KMeans.h
| M	src/distributions/hmm/HMM.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Mathematics.h
|  
* commit f1b91f46200a73eb9caf79bc0a5e9b264fa2ec4e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 11 08:06:39 2007 +0000
| 
|     add get_classifier support for KMeans and radius estimate fixes
| 
| M	matlab/examples/cluster_kmeans.m
| M	src/NEWS
| M	src/clustering/KMeans.cpp
| M	src/clustering/KMeans.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIMatlab.cpp
|  
* commit 7b276bd0ff990687650047194ab00f0aacd44567
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 11 06:48:53 2007 +0000
| 
|     add kmeans matlab exmaple
| 
| A	matlab/examples/cluster_kmeans.m
|  
* commit 14d3ff8c55b9c4f0b6f08c12f3c91720f535421e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 11 06:28:08 2007 +0000
| 
|     add clustering methods support
| 
| M	src/classifier/KNN.h
| A	src/clustering/Clustering.i
| A	src/clustering/KMeans.cpp
| A	src/clustering/KMeans.h
| A	src/clustering/KMeans.i
| M	src/distance/Distance.i
| A	src/distance/NormSquaredDistance.cpp
| A	src/distance/NormSquaredDistance.h
| A	src/distance/NormSquaredDistance.i
| A	src/distance/SparseDistance.h
| A	src/distance/SparseNormSquaredDistance.cpp
| A	src/distance/SparseNormSquaredDistance.h
| A	src/distance/SparseNormSquaredDistance.i
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIDistance.h
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/Kernel.i
| D	src/kernel/SparseNormSquaredKernel.cpp
| D	src/kernel/SparseNormSquaredKernel.h
| D	src/kernel/SparseNormSquaredKernel.i
| M	src/lib/common.h
|  
* commit 0e32f64d0b5970e2a7f0b4799901da6bbaa7a3ab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 5 21:57:53 2007 +0000
| 
|     convert Trie to template and add DNATrie, POIMTrie as examples; this is to not require the WDS kernel to use 24 extra bytes per node
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 99a6139c94f73d3626522f9e091cd3f6316932ae
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 5 15:33:22 2007 +0000
| 
|     use INT idx in Trie
|     fix compile warnings (gcc4.2 warns about const char*)
| 
| M	src/base/Version.cpp
| M	src/base/Version.h
| M	src/gui/Python.cpp
| M	src/guilib/GUIPython.cpp
| M	src/kernel/LocalAlignmentStringKernel.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit eb576524c00ae7b4b68c79bfba43360f78d4995a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 5 14:35:21 2007 +0000
| 
|     POIMs work...!
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 6d6aa3b710a8895136b27c33a6d68cc8e15a5de8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 3 19:05:30 2007 +0000
| 
|     fix compilation with --disable-lapack
| 
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/LibLinear.h
| M	src/classifier/svm/SVM_linear.cpp
| M	src/classifier/svm/SVM_linear.h
| M	src/classifier/svm/Tron.cpp
| M	src/classifier/svm/Tron.h
| M	src/guilib/GUIClassifier.cpp
|  
* commit f4b75094775e4832e494d88dde6373073cdb4f89
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Sep 1 17:52:52 2007 +0000
| 
|     merge changes from 0.4.1 branch
| 
| M	Makefile
| M	R/Makefile
| M	R/sg/DESCRIPTION
| A	matlab/examples/test_l2svm.m
| A	matlab/examples/test_svm_multiclass.m
|  
* commit b3315317879eac912f731a794e47d3414757c932
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 31 21:02:39 2007 +0000
| 
|     release 0.4.1
| 
| M	src/ChangeLog
|  
* commit 67747348fab30958532b99c05081dfe3dc54efb2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 31 21:00:54 2007 +0000
| 
|     cleanups, prepare for release 0.4.1
| 
| M	src/CONTRIBUTIONS
| M	src/NEWS
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/GaussianKernel.i
| M	src/kernel/KernelMachine.i
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/SimpleKernel.i
| M	src/lib/Trie.h
|  
* commit 54854a711206ecba1cb9488fc106b88d91adce65
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 31 13:31:06 2007 +0000
| 
|     subgradlpm interface file
| 
| A	src/classifier/SubGradientLPM.i
|  
* commit 2eea9e5117e29dcdbe17ab430486e5e754308828
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 31 13:29:36 2007 +0000
| 
|     add missing interface files
| 
| A	src/classifier/LPBoost.i
| M	src/classifier/SparseLinearClassifier.i
| A	src/classifier/svm/LibLinear.i
| A	src/classifier/svm/MPD.i
| A	src/kernel/CanberraWordKernel.i
| A	src/kernel/HammingWordKernel.i
| A	src/kernel/ManhattenWordKernel.i
|  
* commit 9d94009472ab21df2c53cc17494332f8230fe65b
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Aug 30 16:29:55 2007 +0000
| 
|     POIMS: Enabled to output partial scores, to aid debugging.
| 
| M	matlab/examples/test_poim_wds.m
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 57c7241cb2b572f08652846cfb04131eecf8df42
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 29 16:29:54 2007 +0000
| 
|     add support for POIMs and custom distributions
| 
| M	matlab/examples/test_poim_wds.m
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
|  
* commit 05ea118e0358a1bc465f107649ffedba161b439d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 29 14:57:05 2007 +0000
| 
|     move all the commands into a common header file GUICommands.h
| 
| M	src/distributions/histogram/Histogram.cpp
| M	src/gui/Matlab.cpp
| M	src/gui/Octave.cpp
| M	src/gui/Python.cpp
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| A	src/guilib/GUICommands.h
|  
* commit 0789225477daf71a1a3bc4254b197f08df153d3c
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Wed Aug 29 14:28:47 2007 +0000
| 
| M	matlab/examples/test_poim_wds.m
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 9b7abca4b5e932d2823f8fde81be9a5fc496cddc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 28 14:27:35 2007 +0000
| 
|     get poim
| 
| M	matlab/examples/test_poim_wds.m
| M	matlab/examples/test_spec_interp.m
|  
* commit 1727c3be49f134575023f84229d722eb10bdddef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 28 14:24:49 2007 +0000
| 
|     get normal support
| 
| M	matlab/examples/test_poim_wds.m
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
|  
* commit 598c6d6ef328b34f84481455900d2394e425feb5
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Tue Aug 28 13:33:49 2007 +0000
| 
| M	matlab/examples/test_poim_wds.m
|  
* commit 4ac383947866556acac3e7f4782dea499e289f51
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Tue Aug 28 12:44:00 2007 +0000
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
|  
* commit dadce6730e590ef9c9ffddd9511c1fbe05bf5f39
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Fri Aug 24 14:22:09 2007 +0000
| 
| M	matlab/examples/test_poim_wds.m
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
|  
* commit 89d3cb93a9f59a67449277eef0d71662418088f5
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Fri Aug 24 14:18:38 2007 +0000
| 
| M	matlab/examples/test_poim_wds.m
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Trie.cpp
|  
* commit 7497dacd8c2f4d8a56c3ad0fe2f2c212299989b5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 24 09:50:10 2007 +0000
| 
|     add POS2_NONORM kernel
| 
| M	matlab/examples/test_poim_wds.m
| M	src/guilib/GUIKernel.cpp
|  
* commit ddb4cd1ff9ae20e9d8bb82fbaf89bdec358230bb
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Fri Aug 24 09:35:48 2007 +0000
| 
| M	matlab/examples/test_poim_wds.m
|  
* commit a09935de089b28204b74fba9b3a9bc514bf273c7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 24 05:37:10 2007 +0000
| 
|     avoid copying and directly use SparseFeatures<DREAL> in liblinear
| 
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/SVM_linear.cpp
| M	src/classifier/svm/SVM_linear.h
|  
* commit b5d6247143cc9f5c034d4bb144344e72661943aa
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Aug 23 17:55:00 2007 +0000
| 
| M	matlab/examples/test_poim_wds.m
|  
* commit 42c57ff97cd376c832745be8d0ffbe3b2bfc698d
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Aug 23 17:49:41 2007 +0000
| 
| M	matlab/examples/test_poim_wds.m
|  
* commit eaaa82461a79ef18a3e417157e8f8e53b22bd6fd
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Aug 23 17:45:53 2007 +0000
| 
| M	matlab/examples/test_poim_wds.m
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 0c75ccda6918fec477c2d92265bf1ca7e59e25a2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 23 14:32:47 2007 +0000
| 
|     finally fix SVMLin+liblinear
| 
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/Tron.cpp
|  
* commit e0945a1ca9f35526cb980d6adc382f53ae136cec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 23 07:38:55 2007 +0000
| 
|     build whole tree...
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
|  
* commit 054624c3048e653fe69f145d47741b1d903200f2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 22 20:41:02 2007 +0000
| 
|     test whether kernel is inited on train()
| 
| M	src/regression/KRR.cpp
|  
* commit 307d8679a010490a1674660a8f0617784650191f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 22 19:39:14 2007 +0000
| 
|     add compute_poim_wd test script/matlab interface access function
| 
| A	matlab/examples/test_poim_wds.m
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Trie.h
|  
* commit fa48ae4c621a088eec5421290427cad0f564e452
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 22 18:54:16 2007 +0000
| 
|     add a combined features example
| 
| A	python-modular/examples/combined_features_svm.py
|  
* commit 02185c1d9fff4bb15a9d8c915d42a5345b831201
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Wed Aug 22 17:29:07 2007 +0000
| 
| M	src/lib/Trie.cpp
|  
* commit cc71728e870ac37f07e63c3320d4e17630c092a2
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Wed Aug 22 17:04:50 2007 +0000
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit b6b85722623acb17f732b84e826b9d7aae6a760a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 22 16:48:55 2007 +0000
| 
|     - add python-modular support for the custom kernel
|     - lots of fixes for SVMLin / Liblinear
| 
| A	python-modular/examples/custom_kernel.py
| M	src/classifier/LinearClassifier.i
| M	src/classifier/SparseLinearClassifier.i
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMLin.h
| M	src/classifier/svm/SVM_linear.cpp
| M	src/classifier/svm/Tron.cpp
| M	src/classifier/svm/Tron.h
| M	src/classifier/svm/ssl.cpp
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/CustomKernel.i
|  
* commit 8294137cfa2dfdcde13cd3d23adf74be8d6f81cd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 21 18:06:38 2007 +0000
| 
|     fix typo in configure
|     add option to disable bias in svmlin bias
| 
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMLin.h
| M	src/classifier/svm/ssl.cpp
| M	src/classifier/svm/ssl.h
| M	src/configure
| M	src/guilib/GUIClassifier.cpp
|  
* commit 12c5463c21c42ed566151e909ffa32092de3b06d
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Tue Aug 21 17:31:17 2007 +0000
| 
| D	src/kernel/WeightedDegreePositionStringKernel.POIM.cpp
| D	src/lib/Trie.POIM.cpp
| D	src/lib/Trie.POIM.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit dbb885e701ecb1322aaf1c4b2784dd89c0f4395b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 21 12:24:17 2007 +0000
| 
|     fix the python examples/python io
| 
| M	python/examples/svm_classificaton.py
| M	python/examples/svr_regression.py
| M	python/examples/test_mkl.py
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/io.cpp
|  
* commit d71f8902a51a092214e3c89fa3f766715b970c70
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Aug 20 13:59:42 2007 +0000
| 
|     add liblinear L2 / LR support including example. currently data is internally
|     copied, more intrusive changes to liblinear are required to fix this:
|     
|     ( liblinear uses 1-based indices and terminates sparse vectors with -1,
|       additionally a 'bias feature' may need to be added )
| 
| A	matlab/examples/liblinear.m
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/LibLinear.h
| M	src/classifier/svm/SVM_linear.cpp
| M	src/classifier/svm/SVM_linear.h
| M	src/classifier/svm/Tron.cpp
| M	src/features/SparseFeatures.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIMatlab.cpp
|  
* commit 467e537856ef8f030ad99cb48d45aeacecf9f655
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 17 17:03:29 2007 +0000
| 
|     add support for sliding window 'skip' option, which skips the first
|     n characters of the generated string (same thing as when using convert
|     		to do higher oder conversions)
|     
|     e.g. if you use:
|     sg('send_command', sprintf('convert TEST STRING CHAR STRING WORD %i %i', order, order-1));
|     
|     then for a window len of 50 the order-1 chars should be skipped:
|     sg('send_command', sprintf('slide_window TEST 50 1 %d', order-1));
|     
|     sg('from_position_list','TEST', 50, 0:(total_test_len-len-order+1), order-1);
| 
| M	matlab/examples/test_sliding_window.m
| M	src/features/StringFeatures.h
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIMatlab.cpp
|  
* commit 12ea9bf653e30f0704b80c925e9b2bb20affa2a7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 17 16:20:21 2007 +0000
| 
|     add a sliding window test
| 
| A	matlab/examples/test_sliding_window.m
|  
* commit 5fac3fd2c49dee2c3fd3b2196265a8d06d643def
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 17 16:17:42 2007 +0000
| 
|     - add matlab support for get features of type string/word
|     - make POIMs work with weighted spec kernel
|     - fix further issues with sliding window/spec (works for order=1 now)
| 
| M	matlab/examples/spec_interp.m
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
|  
* commit 61d7769ab6020443e65fd9cd30edf1b8ccf737f2
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Fri Aug 17 11:58:40 2007 +0000
| 
| A	src/kernel/WeightedDegreePositionStringKernel.POIM.cpp
| A	src/lib/Trie.POIM.cpp
| A	src/lib/Trie.POIM.h
|  
* commit c1c227dfc1cb4abb857a04310e40a36fb9b618a8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 17 11:00:58 2007 +0000
| 
|     add radix sort and make it the new default for spec* kernels, furthermore
|     add checks for spec kernel compute (whether all preprocs attached to features
|     		are actually applied). then also sort the the features when doing init
|     (potentially resolving the problem with sliding window/spec kernel)
| 
| M	matlab/examples/spec_interp.m
| M	src/features/StringFeatures.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/preproc/SortUlongString.cpp
| M	src/preproc/SortWord.cpp
| M	src/preproc/SortWordString.cpp
|  
* commit 26d324491669910a77a52f1cfb5e431e655247f3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 16 18:05:01 2007 +0000
| 
|     remove debug code
| 
| M	src/kernel/CommWordStringKernel.cpp
|  
* commit 0f82a58024e87a6c5edc6cea54774ec4c95eec7b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 16 17:54:40 2007 +0000
| 
|     create two explamples for spec-poims: one for testing/one for a real use case;
|     compute obj for lpboost
| 
| M	matlab/examples/lpboost.m
| M	matlab/examples/spec_interp.m
| A	matlab/examples/test_spec_interp.m
|  
* commit f4a5b0aec86c5bff7d0ed1f12a963ebc2de8af88
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 16 17:32:47 2007 +0000
| 
|     POIM for spec bugfixes
| 
| M	matlab/examples/spec_interp.m
| M	src/kernel/CommWordStringKernel.cpp
|  
* commit a6425c1f356831f95c73e52202fdf0d354c91071
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Thu Aug 16 09:27:18 2007 +0000
| 
|     removed several minor but fatal bugs in Mindy distance to kernel mapping. In essence either use RBF conversion or check that the distance is a negative CPD kernel.
| 
| M	src/features/MindyGramFeatures.h
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
|  
* commit d5e7d35b4826a284c900a6a1ece1c689ba5061f1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 15 15:18:53 2007 +0000
| 
|     new trie fields
| 
| M	src/lib/Trie.h
|  
* commit bc2d19d17d5babfbeeef9b676b27aedc84e84cc0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 15 14:19:38 2007 +0000
| 
|     rename A0 -> A_zero , B0 -> B_zero as there seems to be some
|     naming collision with numpy
| 
| M	src/classifier/svm/SubGradientSVM.cpp
|  
* commit 8f0195d8ee59f9d839798d701e8ffec1e591fad9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 15 13:39:51 2007 +0000
| 
|     fix R svm example/enhance matlab veriant
|     debugging spec poims
| 
| M	R/examples/svm_classification.R
| M	matlab/examples/spec_interp.m
| M	matlab/examples/svm_classification.m
| M	src/kernel/CommWordStringKernel.cpp
|  
* commit c003d2a90bf95fb64c795d393413dea9e7d0fdd3
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Mon Aug 13 08:46:16 2007 +0000
| 
|     added support for latest Mindy library
| 
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/kernel/MindyGramKernel.h
|  
* commit 14ddd23c3f3d74001be2d295f79c3e8bce881cef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 8 08:55:14 2007 +0000
| 
|     removed debug code/make toy example more convincing
| 
| M	matlab/examples/spec_interp.m
| M	src/kernel/CommWordStringKernel.cpp
|  
* commit 287f0d04d95be60c4956de3d73d5e43ec388a422
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 7 20:49:43 2007 +0000
| 
|     add example
| 
| A	matlab/examples/spec_interp.m
|  
* commit 486b4547ebcb519dfb4c17da2c0d41b8cf41c329
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 7 20:49:22 2007 +0000
| 
|     spectrum poim seems to work...
| 
| M	src/kernel/CommWordStringKernel.cpp
|  
* commit 8d7092884c921e30cb02cdb7fd45e1e59316bbc2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 7 14:08:37 2007 +0000
| 
|     - protein alphabet is now (as all the others) only UPPERCASE
|     - add example for LA kernel
| 
| A	matlab/examples/local_alignment_kernel.m
| M	src/features/Alphabet.cpp
| M	src/kernel/LocalAlignmentStringKernel.cpp
| M	src/kernel/LocalAlignmentStringKernel.h
|  
* commit f77636de13ebd33c96e927aef2db9173da26a497
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 7 13:35:19 2007 +0000
| 
|     add support for JP's local alignment kernel
| 
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/Kernel.i
| A	src/kernel/LocalAlignmentStringKernel.cpp
| A	src/kernel/LocalAlignmentStringKernel.h
| A	src/kernel/LocalAlignmentStringKernel.i
| M	src/lib/common.h
|  
* commit 804fd3cbd2acd0590ea9286bf0c343c00ef356f1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 7 08:16:35 2007 +0000
| 
|     add function to compute POIM from spectrum kernel
| 
| M	src/classifier/svm/Tron.cpp
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Mathematics.h
|  
* commit 5be8d19467275e2c23a210b9a2b7af7477f71071
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Aug 6 06:39:40 2007 +0000
| 
|     add Xiang-Rui Wang and Chih-Jen Lin's
|     liblinear (for LS-logistic regression / L2 svm)
| 
| M	src/CONTRIBUTIONS
| A	src/classifier/svm/LibLinear.cpp
| A	src/classifier/svm/LibLinear.h
| A	src/classifier/svm/SVM_linear.cpp
| A	src/classifier/svm/SVM_linear.h
| A	src/classifier/svm/Tron.cpp
| A	src/classifier/svm/Tron.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/common.h
|  
* commit 62188f55e9cd9e0cff93643818b1fb371fd097bc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 3 06:44:28 2007 +0000
| 
|     add support for BYTE/WORD/ULONG based stringfeatures for sliding
|     window/position list
| 
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIMatlab.cpp
|  
* commit a690b91c9dd94aabac4ef91d6c33c7c411fd70f3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 2 20:52:58 2007 +0000
| 
|     seems to work
| 
| M	matlab/examples/string_features.m
|  
* commit d2c34b0d8e115aa4918bd6b400abb124226ff0bf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 2 20:45:42 2007 +0000
| 
|     potentially fix the erraneous delete[] happening after calling from_window_list
| 
| M	src/features/StringFeatures.h
|  
* commit 8907e2145158db459cfe504f22bc6c4950991da4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 31 16:34:16 2007 +0000
| 
|     fix compilation with --disable-svm-light
| 
| M	src/kernel/Kernel.h
|  
* commit ca4d62296bd5c3349152ccd27aea9d8c30dd8a1d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 30 16:52:38 2007 +0000
| 
|     cplex 10 compat fixes as suggested by Gorden Jemwa
| 
| M	src/configure
| M	src/lib/Cplex.h
|  
* commit 6eb60e02e97358fbcabd8c9e8c4ccda549f5c8b8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 30 14:13:38 2007 +0000
| 
|     merge changes from 0.4.0
| 
| M	Makefile
| M	R/Makefile
| M	R/sg/DESCRIPTION
| M	src/Makefile
|  
* commit 25dd2edc5cd6b4e9f132482bcd08ee78798cf6b4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 30 13:02:20 2007 +0000
| 
|     release 0.4.0
| 
| M	src/ChangeLog
| M	src/Makefile
|  
* commit b01b53e4ddd46fc29391bf9fb775569261018356
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 30 12:36:07 2007 +0000
| 
|     update changelog
| 
| M	src/ChangeLog
|  
* commit c9a7e361046256882d5f74da55d2367abefedaaa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 30 12:31:14 2007 +0000
| 
|     marking 4.0
| 
| M	Makefile
|  
* commit 00c417640d14a06625ba182a25ba9284d0f2fd48
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 30 10:55:39 2007 +0000
| 
|     set default gcc first
| 
| M	src/configure
|  
* commit 22dee16e2419a715cee938393024c0f7e2e47aea
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 30 10:49:38 2007 +0000
| 
|     add four MKL examples
| 
| M	matlab/examples/lpboost.m
| M	matlab/examples/lpm.m
| A	matlab/examples/mkl_classify_christmas_star.m
| A	matlab/examples/mkl_pseudo_dna.m
| A	matlab/examples/mkl_regression_3sine_waves.m
| A	matlab/examples/mkl_regression_sine.m
|  
* commit d25a2bc5b14296bd29d85e24df97b59ff316201d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 30 10:15:04 2007 +0000
| 
|     forgotten break in pthread detection
| 
| M	src/configure
|  
* commit 3a67c6d192d4f2fc23ceebe198cab224c48acdbe
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 30 10:12:23 2007 +0000
| 
|     some cygwin/solaris configure fixes
|     
|     (though it still won't compile using solaris' compiler as it does not support
|      dynamic argument macros)
| 
| M	src/configure
|  
* commit c9757ff0e61d60f6edf8710ecaf1581a2d13ae78
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jul 29 11:57:20 2007 +0000
| 
|     remove undefined suppress from configure
| 
| M	src/configure
|  
* commit 61c3df995fb287f3b0d33a0ddbb783693f59cd6f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jul 29 10:49:28 2007 +0000
| 
|     fix the remaining python-modular interface examples
| 
| M	python-modular/examples/wd_kernel_svm.py
| M	python-modular/examples/wd_kernel_svm_linadd_batch.py
| M	src/base/Version.cpp
| M	src/base/Version.h
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/SVM_light.cpp
|  
* commit a1f1a89340b9f5531ea8be41f926dae38dc119e0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jul 28 22:43:38 2007 +0000
| 
|     many python-modular fixes - todo: wd kernels
| 
| M	python-modular/examples/multiple_svms_matplotlib.py
| M	python-modular/examples/numpy_krr_sinc.py
| M	python-modular/examples/numpy_svr_sinc.py
| D	python-modular/examples/spec_kernel.py
| M	python-modular/examples/wd_kernel_svm.py
| M	python-modular/examples/wds_kernel.py
|  
* commit 49638a8d0cbebfd3cec4de19a001e40a56315cd3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jul 28 20:12:41 2007 +0000
| 
| M	matlab/examples/test_complex_scenario.m
|  
* commit a48d0af28fc825fae2ea6378fb44692c47f46e98
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jul 28 20:12:28 2007 +0000
| 
|     fix get_svm for octave
| 
| M	matlab/examples/test_complex_scenario.m
| M	src/guilib/GUIOctave.cpp
|  
* commit 41c1f609d7e4288d7a3e8dbe5ccc81735805530f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jul 28 19:11:56 2007 +0000
| 
|     * argh, fix bug in spec kernels: normalize functions needs lhs on add_to_normal
|     and rhs on compute optimized
| 
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
|  
* commit 1400a610773505b8e6c411e6ff4a0d0a7b416a6d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jul 28 17:20:49 2007 +0000
| 
|     fix oneclass svm bug
| 
| M	src/classifier/Classifier.h
| M	src/guilib/GUIClassifier.cpp
|  
* commit 0f00c0c8ccd86250b7f287fd96b1217cc50223ce
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jul 27 22:39:34 2007 +0000
| 
|     * fix many of the script errors for matlab/octave,
|     	currently crashing: test_one_class_svm.m test_complex_scenario.m
| 
| M	octave/examples/hmm.m
| M	octave/examples/markov_chain.m
| M	octave/examples/wds_kernel.m
| M	src/classifier/KNN.h
| M	src/classifier/Perceptron.h
| M	src/classifier/SubGradientLPM.h
| M	src/classifier/svm/CPLEXSVM.h
| M	src/classifier/svm/GMNPSVM.h
| M	src/classifier/svm/GNPPSVM.h
| M	src/classifier/svm/GPBTSVM.h
| M	src/classifier/svm/LibSVM.h
| M	src/classifier/svm/LibSVM_multiclass.h
| M	src/classifier/svm/LibSVM_oneclass.h
| M	src/classifier/svm/MPD.h
| M	src/classifier/svm/SVMLin.h
| M	src/classifier/svm/SVMPerf.h
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/SubGradientSVM.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIOctave.cpp
| M	src/lib/Trie.cpp
| M	src/lib/common.h
| M	src/regression/svr/LibSVR.h
| M	src/regression/svr/SVR_light.h
|  
* commit 7e49a887c0616e6a9f25051ef20f60c396083f13
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jul 27 18:14:51 2007 +0000
| 
|     * fix compilation error in old python interfacew
|     * fix warning in new python interface
| 
| M	src/guilib/GUIPython.cpp
| M	src/kernel/Kernel.i
|  
* commit 95b3ad040bc2a59e2b65a0dca59a33245a30c466
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jul 27 17:07:42 2007 +0000
| 
|     * update NEWS
|     * fix remaining CharKernel occurances
| 
| M	src/NEWS
| M	src/kernel/FixedDegreeStringKernel.i
| M	src/kernel/LocalityImprovedStringKernel.i
|  
* commit 3fd465e7c9aa25cac57638aebe23a49d1169e2dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 26 17:56:40 2007 +0000
| 
|     fix test script
| 
| M	matlab/examples/test_weighted_spectrum.m
|  
* commit c5deabaa3d11a158576e4fbed73ee221fccde0c9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 23 15:30:23 2007 +0000
| 
|     + add linadd functionality + svm test case/example
| 
| A	matlab/examples/test_weighted_spectrum.m
| A	matlab/examples/weighted_spec.m
| M	src/features/StringFeatures.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
|  
* commit 86cc4784b762ee34a62d4bfa5b593afbc6b35569
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jul 22 13:19:10 2007 +0000
| 
|     an example on how to use the weighted spectrum kernel
| 
| M	src/features/StringFeatures.h
| M	src/guilib/GUIFeatures.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
|  
* commit 459afad46f040a8fd96e791feb22b2d3520384fd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jul 21 12:08:22 2007 +0000
| 
|     - update octave example
|     - approaching the WDCWS kernel :-)
| 
| M	octave/examples/spec_kernel.m
| M	python-modular/examples/wd_kernel.py
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
|  
* commit 02654d041df2e2ecb5557345bdf904a1f2f3131d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jul 21 10:59:21 2007 +0000
| 
|     - remove Spectrum Kernel / suffix arrays due to licensing conflict (MPL vs. GPL)
|     - remove CommWord kernel
|     - add WeightedCommWordString Kernel
| 
| M	src/features/StringFeatures.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIMatlab.cpp
| D	src/kernel/CommWordKernel.cpp
| D	src/kernel/CommWordKernel.h
| D	src/kernel/CommWordKernel.i
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.i
| D	src/kernel/SpectrumKernel.cpp
| D	src/kernel/SpectrumKernel.h
| D	src/kernel/SpectrumKernel.i
| A	src/kernel/WeightedCommWordStringKernel.cpp
| A	src/kernel/WeightedCommWordStringKernel.h
| A	src/kernel/WeightedCommWordStringKernel.i
| M	src/lib/common.h
| D	src/lib/suffixarray/BWT.cpp
| D	src/lib/suffixarray/BWT.h
| D	src/lib/suffixarray/BoundedRangeWeight.cpp
| D	src/lib/suffixarray/BoundedRangeWeight.h
| D	src/lib/suffixarray/ChildTable.cpp
| D	src/lib/suffixarray/ChildTable.h
| D	src/lib/suffixarray/ConstantWeight.cpp
| D	src/lib/suffixarray/ConstantWeight.h
| D	src/lib/suffixarray/DataType.h
| D	src/lib/suffixarray/ESA.cpp
| D	src/lib/suffixarray/ESA.h
| D	src/lib/suffixarray/ErrorCode.h
| D	src/lib/suffixarray/ExpDecayWeight.cpp
| D	src/lib/suffixarray/ExpDecayWeight.h
| D	src/lib/suffixarray/I_LCPFactory.h
| D	src/lib/suffixarray/I_SAFactory.h
| D	src/lib/suffixarray/I_WeightFactory.h
| D	src/lib/suffixarray/InductionSort.cpp
| D	src/lib/suffixarray/InductionSort.h
| D	src/lib/suffixarray/IntroSort.h
| D	src/lib/suffixarray/KSpectrumWeight.cpp
| D	src/lib/suffixarray/KSpectrumWeight.h
| D	src/lib/suffixarray/LCP.cpp
| D	src/lib/suffixarray/LCP.h
| D	src/lib/suffixarray/MSufSort.cpp
| D	src/lib/suffixarray/MSufSort.h
| D	src/lib/suffixarray/SConstruct
| D	src/lib/suffixarray/Stack.h
| D	src/lib/suffixarray/W_kasai_lcp.cpp
| D	src/lib/suffixarray/W_kasai_lcp.h
| D	src/lib/suffixarray/W_msufsort.cpp
| D	src/lib/suffixarray/W_msufsort.h
| M	src/preproc/SortWordString.cpp
|  
* commit b792a51463e82b6ad9fd978beb3ed2f0f258b6e9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 12 09:44:01 2007 +0000
| 
|     fix warning in base/SGObject
| 
| M	src/base/SGObject.h
|  
* commit 3c6efd954f69b2abda76410a17650211dca8f3ca
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Jul 11 14:50:58 2007 +0000
| 
|     fixed minor compilation problem
| 
| M	src/lib/Mathematics.cpp
|  
* commit b3cdb4cf510470c4db7d203df4de6991a3942b34
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 9 09:29:38 2007 +0000
| 
|     code cleanup for sparse/linear kernels
| 
| M	src/configure
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/CommWordKernel.h
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
|  
* commit 3c8b7270fae27840b09ac5746c3a791c1c9b51fb
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Jul 8 13:44:42 2007 +0000
| 
|     added a missing case switch.
| 
| M	src/kernel/Kernel.cpp
|  
* commit 362a9421c2e7a7db6a989dc6d30b6ec12e284826
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 18 12:45:38 2007 +0000
| 
|     fix syntax error in configure
| 
| M	src/configure
|  
* commit 13a67e856a27db276f5a60e14b8c28b60d8e74e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 18 09:22:41 2007 +0000
| 
|     split asserts and don't fail if string is already a sling window
|     string and shorter than window len
| 
| M	src/features/StringFeatures.h
|  
* commit 7fe91b9b2d7129390cd6fc62884b5ae84bed3256
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jun 16 17:40:21 2007 +0000
| 
|     gcc-4.2 warning fixes
| 
| M	doc/doxygen/Doxyfile
| M	src/NEWS
| M	src/base/Version.cpp
| M	src/base/Version.h
| M	src/classifier/Classifier.cpp
| M	src/configure
| M	src/distributions/hmm/HMM.h
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIHMM.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
|  
* commit 4c7697456426c4df5f7c5febb6c28ef3421bbdf9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 7 07:52:16 2007 +0000
| 
|     implement time limit also for subgradientsvm/lpm
| 
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
|  
* commit 6e64f26512653a948b4d7c4617ba02e9dd95e679
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 7 07:28:08 2007 +0000
| 
|     allow setting training time limit for LPM/LPBoost
| 
| M	src/classifier/Classifier.cpp
| M	src/classifier/Classifier.h
| M	src/classifier/LPBoost.cpp
| M	src/classifier/LPM.cpp
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
|  
* commit 8ad7cba4f9c0cdad48f89c5ff0a66b05e5533208
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 7 06:04:09 2007 +0000
| 
|     use abs(alpha*norm(w)^2) ... note that with floats abs may be negative
|     for values very close to zero
| 
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
|  
* commit caeea7eced95defc1e1ab250c416869631ede1b9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 7 05:09:26 2007 +0000
| 
|     remove <1e-6
| 
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
|  
* commit 4e120cc1ecb23f9aaf4011eb99872c985bdf760b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 7 05:01:22 2007 +0000
| 
|     argh, need to use abs(alpha) in convergence crit. of course
| 
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
|  
* commit 64f26aaed18a88190ad82ce91a1494d701013273
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 6 16:25:37 2007 +0000
| 
|     use speedups from subgradientsvm
| 
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/SubGradientLPM.h
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/guilib/GUIClassifier.cpp
|  
* commit e301c079addd9030854c0ac67ed44f1330c7d42e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 6 13:13:10 2007 +0000
| 
|     don't allocate columns on stack (fixes lpboost crash)
| 
| M	src/classifier/LPBoost.cpp
| M	src/lib/Cplex.cpp
|  
* commit 2922b5f13dce92008dba756744eae796f60bd767
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 6 09:02:23 2007 +0000
| 
|     uncomment debug code
| 
| M	src/lib/Cplex.cpp
|  
* commit 6bf39b3dafc35df6267afe6069dd86b8b2a0ba3a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 6 07:36:55 2007 +0000
| 
|     use cplex result directly
| 
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/Mathematics.cpp
|  
* commit 072648650fefb852deb0d168b6bb044aba3de28d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 5 21:04:50 2007 +0000
| 
|     still not 100% the same
| 
| M	src/classifier/SubGradientLPM.cpp
| M	src/lib/Cplex.cpp
|  
* commit d3ecacec488fdee871930114e101bafa1f5e920e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 5 18:49:48 2007 +0000
| 
|     add further ASSERTS
| 
| M	src/lib/Cplex.cpp
|  
* commit 89e240117d9e4611447d5d9dfb270fbf76f23bef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 5 17:32:42 2007 +0000
| 
|     subgradLPM works now on 2d toy data
| 
| M	src/classifier/SubGradientLPM.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Cplex.cpp
|  
* commit 7debdc164ef73c10e681193f7d8f832dff111128
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 5 15:15:52 2007 +0000
| 
|     finding minimum subgradient seems to work now... now for the line search
| 
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/SubGradientLPM.h
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
|  
* commit 6bb77e5c49856d50d9c05a9a9d66f4f8226ea5ac
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 5 13:26:20 2007 +0000
| 
| M	src/classifier/SubGradientLPM.cpp
|  
* commit 1d46c2f36d67a00a7d20984cbcb9294eb56517a6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 5 13:04:21 2007 +0000
| 
|     debuggin...
| 
| M	src/classifier/LPBoost.cpp
| M	src/classifier/LPM.cpp
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/svm/CPLEXSVM.cpp
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
|  
* commit b0c5fd593772a1f1caee5b077fe86fb9672354cf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 4 16:50:12 2007 +0000
| 
|     still not even close
| 
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/SubGradientLPM.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Mathematics.h
|  
* commit 277a26e4884c4503f78e487b75cf4124646ceb9d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 4 14:42:14 2007 +0000
| 
|     - fix lpboost now for the subgradientlpm
| 
| M	matlab/examples/lpboost.m
| M	src/classifier/LPBoost.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
|  
* commit c11ec2cd1c88b803e0c0942a45a6e6fce6e0f079
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 4 09:13:50 2007 +0000
| 
|     add stubs for SubGradientLPM
| 
| M	matlab/examples/test_subgradsvm.m
| M	src/classifier/LPBoost.cpp
| A	src/classifier/SubGradientLPM.cpp
| A	src/classifier/SubGradientLPM.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/common.h
|  
* commit 5d789976a221d6f156028d41cfa905eedd3cdef0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 4 05:45:56 2007 +0000
| 
|     lpboost still not working correctly...
| 
| M	src/classifier/LPBoost.cpp
| M	src/lib/Cplex.cpp
|  
* commit 791fd56a574c60504fa4b54f9236565516292cce
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 3 21:12:12 2007 +0000
| 
|     add lpboost code, I've yet to understand how to obtain the result...
| 
| A	matlab/examples/lpboost.m
| M	matlab/examples/lpm.m
| M	src/classifier/LPBoost.cpp
| M	src/classifier/LPBoost.h
| M	src/classifier/LPM.cpp
| M	src/classifier/LPM.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
|  
* commit 3031d103d8f0d741e3d340f075f27aa0302c1d90
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 3 16:54:13 2007 +0000
| 
|     LPM works now, now for LPBoos
| 
| A	matlab/examples/lpm.m
| M	src/classifier/LPM.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
|  
* commit 561dc2bf71a3966e8165c7c77813d3de810d1d0e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 3 14:34:08 2007 +0000
| 
|     + get_transpose() in sparse features
|     + wrap LPM
| 
| M	src/classifier/LPBoost.cpp
| M	src/classifier/LPBoost.h
| M	src/classifier/LPM.cpp
| M	src/classifier/LPM.h
| M	src/features/SparseFeatures.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
|  
* commit c4ce833703e553155db085ab421f171c83a3166d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 3 09:42:36 2007 +0000
| 
|     +stubs for LPM/LPBoost, doing LPM now
| 
| A	src/classifier/LPBoost.cpp
| A	src/classifier/LPBoost.h
| M	src/classifier/LPM.cpp
| M	src/classifier/LPM.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
| M	src/lib/common.h
|  
* commit 8255e669d993962203861493587be4b9690c60ed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 31 14:15:33 2007 +0000
| 
|     still playing with convergence criterion
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Mathematics.h
|  
* commit 99ce50f042d37ae46ba0bf9e58cb96f675d12702
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 31 06:39:39 2007 +0000
| 
|     add svm_use_bias option, and support in svm_light/subgradient svm
| 
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/pr_loqo.cpp
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
|  
* commit 380d7abdef256842c5e78becf2f769e61bffe9cc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 31 05:51:58 2007 +0000
| 
|     option to disable bias
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
|  
* commit cdf7fde98a292be1d9eda448d005c64197bcdf51
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 30 11:47:25 2007 +0000
| 
|     playing with convergence criterion
| 
| M	src/classifier/svm/SubGradientSVM.cpp
|  
* commit 333913220e6c2df1476e0a27ca12ec743484777c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 29 19:17:50 2007 +0000
| 
|     - fix early convergence of subgradient svm
|     - fix double free in wd kernel
| 
| M	matlab/examples/test_subgradsvm.m
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit 03f6146c761c7eaf84c5efec270f65fd76454bcc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 28 17:34:00 2007 +0000
| 
|     forgot to check in matlab build fix:
|     
|     #if !defined(MX_API_VER) || MX_API_VER<0x07040000
|     
|     then define mwSize to be INT etc...
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/matlab.h
|  
* commit 2fab2e054e90d15a4b4360941295690306ea1e59
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 25 20:03:22 2007 +0000
| 
|     -correct copyright
|     -add ctrl+c etc support to GPBTSVM
| 
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpdtsolve.h
| M	src/classifier/svm/gpm.cpp
| M	src/classifier/svm/gpm.h
|  
* commit c4cf8ea05033b1ac02eb2d6ba69d257800cf9580
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 25 14:06:47 2007 +0000
| 
|     make sparse matrices work with matlab 7.4
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/matlab.h
|  
* commit ef9f21d04b9bdd28042dbc5d8b3e25d050287e4b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 25 10:43:02 2007 +0000
| 
|     - fix & test get/set features for sparse vectors
|     - cleanup get/set features for dense vec's (lets hope no bugs)
|     - subgradsvm: check for overlap between qp's
| 
| M	matlab/examples/test_sparse.m
| M	matlab/examples/test_subgradsvm.m
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Mathematics.cpp
|  
* commit 944a125514454e2c00270ad3a0ca1c3abbd53ef0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 25 08:01:36 2007 +0000
| 
| M	src/guilib/GUIMatlab.cpp
|  
* commit 730d1472825195f1fe20dbfce19fb16a9822afaf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 25 06:21:00 2007 +0000
| 
|     add sparse matrix matalb i/o support
| 
| A	matlab/examples/test_sparse.m
| M	src/guilib/GUIMatlab.cpp
|  
* commit ece0b306171dc23fb32bd821ea4a4a6b45952a7d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 24 22:07:16 2007 +0000
| 
|     add gradient descent
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/classifier/svm/qpbsvmlib.h
|  
* commit 8ab3d070349675a05e0664a964cbd924758aedfd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 24 20:05:31 2007 +0000
| 
|     compute only 1/2 of the Q matrix
| 
| M	src/classifier/svm/SubGradientSVM.cpp
|  
* commit 5565b4e2374ddff9afd9ecc9e7ec299fdd4fe111
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 24 17:51:11 2007 +0000
| 
|     use gauss seidel by default
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/lib/Mathematics.h
|  
* commit 3a831ab354b7a7805342e7751a641c0a36b4da55
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 24 17:11:17 2007 +0000
| 
|     implement greedy gauss seidel
| 
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/classifier/svm/qpbsvmlib.h
|  
* commit 780e258dce2a1070f6f64dee2f2c9f262a164deb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 24 17:06:31 2007 +0000
| 
|     - let cplex timeout after 0.5 seconds
|     - option to set max qpsize in subgradientsvm
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/lib/Cplex.cpp
|  
* commit 415d095c52f263ed07c7ba6943c15bbf05ef81f6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 24 04:57:13 2007 +0000
| 
|     update gpbt svm to version nov 2006 (released in january 2007)
| 
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdtsolve.cpp
|  
* commit 865da19a632eaf228a9c5da6586f34fea4e2e71e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 23 18:05:57 2007 +0000
| 
|     - update subgradient svm example
|     - fix objective comput. for subgradient svm
|     - introduce limit to qpsize. if we cannot solve the problem with
|     500 vectors at bound we choose a random but valid subgradient
| 
| M	matlab/examples/test_subgradsvm.m
| M	src/classifier/svm/SubGradientSVM.cpp
|  
* commit 95db0ac430456eea20e3a8316967d2498081d6dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 23 13:20:55 2007 +0000
| 
|     - assign seperate types for sparselinear and sparsegaussian kernel
|     - support get_kernel_optimization for sparse linear kernel
|     
|     huh ?? gpbtsvm seems quite a bit faster than svmlight !!
| 
| M	src/features/SparseFeatures.h
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/lib/common.h
|  
* commit da2cffbe6898f41da334e2501675f72759e36e12
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 23 10:19:57 2007 +0000
| 
|     linadd fix #1
| 
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpdtsolve.h
|  
* commit e9d256a909f68209bc1ebebc4fb896539ca03af1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 23 10:03:04 2007 +0000
| 
|     * enable linadd for GPDT svm
| 
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.cpp
|  
* commit 2655cbea0dc7aa1f7e73a05fc7a1c2cdff47abb2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 23 08:40:23 2007 +0000
| 
|     make qpsize configurable
| 
| M	src/classifier/svm/SubGradientSVM.h
| M	src/guilib/GUIClassifier.cpp
|  
* commit ab61a6adc7fd213e5293fe3d270ec0a04a4e1459
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 22 18:46:09 2007 +0000
| 
|     remove debug output & cleanups
| 
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
|  
* commit 3677a1151be3ed1e3f943d3f52ef044eeb4648e5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 22 18:11:13 2007 +0000
| 
|     playing with covertype...
| 
| M	matlab/examples/test_subgradsvm.m
|  
* commit a20515d75f1418a57dddaea8aa316f4f27556994
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 22 16:10:53 2007 +0000
| 
|     muten subgrad svm
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/lib/Cplex.cpp
|  
* commit 47eaf95d09262117eae6412840e15a554e35ab42
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 22 11:06:46 2007 +0000
| 
|     ...debugging...
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/lib/Cplex.cpp
|  
* commit 818eecdf1ea36a3fb3c021df29a1109f1740df1e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 22 09:15:07 2007 +0000
| 
|     potential cplex fix
| 
| M	src/lib/Cplex.cpp
|  
* commit f9d27570b1ab780542dd967cb1ed31c21789974b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 22 08:58:25 2007 +0000
| 
|     debugging...
| 
| M	matlab/examples/test_subgradsvm.m
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
|  
* commit 0b6aa7622aa31bf223438f16a81af50c60e7fd0a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 22 06:45:01 2007 +0000
| 
|     cplex dense_to_cplex_sparse fix
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/lib/Cplex.cpp
|  
* commit 59906b3bb78cf7b41d7fa7b89b007fb6cbe3b488
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 21 20:26:56 2007 +0000
| 
|     - add lp and qp wrappers for cplex
|     - add cplex as a method in qpbsvmlib
| 
| M	matlab/examples/test_subgradsvm.m
| M	src/classifier/svm/CPLEXSVM.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/classifier/svm/qpbsvmlib.h
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
|  
* commit 17af76764a34f5c4658371cac4b78717873b30d2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 21 11:00:59 2007 +0000
| 
|     fix cplex autodetection
| 
| M	src/configure
|  
* commit 906cdae53559f4ef7618c0a61add44a52b98ee88
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 21 10:01:07 2007 +0000
| 
|     fix uninitialised variables
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/qpbsvmlib.cpp
|  
* commit 217178ae0312702f318415686e9ac5155ca027df
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 19 07:12:11 2007 +0000
| 
|     * fix copyright in grad proj techn. svm
|     * add pr_loqo to qpbsvmlib
| 
| M	matlab/examples/test_subgradsvm.m
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpm.cpp
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/classifier/svm/qpbsvmlib.h
| M	src/structure/Plif.cpp
|  
* commit 171b87dfe1529546c7d59a81f7f4cc9a10451ede
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 18 13:18:19 2007 +0000
| 
|     * fix matlab7.4 warnings (INT casts...)
|     * change argument order of vec1_plus_scalar_times_vec2
|     * turn pr_loqo warnings into debug messages
|     * add generic [bias,weights]=sg('get_classifier') call
|     * autoadjust epsilon for subgradient svm
| 
| A	matlab/examples/test_subgradsvm.m
| M	src/classifier/LinearClassifier.h
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/pr_loqo.cpp
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/lib/Mathematics.h
|  
* commit 85dfa6834265d63be5f728e7052ae9c89b2aa247
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 15 20:20:41 2007 +0000
| 
|     synonymize SVMLIGHT with LIGHT for compatibility
| 
| M	src/guilib/GUIClassifier.cpp
|  
* commit 3409aaa62eb1fcc42f2048d89b46de5b38a8e00e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 15 10:33:33 2007 +0000
| 
|     fix get_matrix stuff
| 
| M	R/testcases/read_mfile.R
| M	R/testcases/run.sh
| M	R/testcases/test_kernels.R
| M	src/guilib/GUIR.cpp
|  
* commit f84e9d3c34cc0be4b71033b947b0ba3330872719
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue May 15 09:27:32 2007 +0000
| 
| M	R/testcases/test_kernels.R
|  
* commit 52ae72b560273171cce73ec22bf4fd2f5d44899a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 15 09:16:11 2007 +0000
| 
|     R test update
| 
| M	R/testcases/run.sh
| M	R/testcases/test_kernels.R
| M	matlab/examples/test_sparse_methods.m
| M	src/Makefile
| M	src/classifier/svm/SubGradientSVM.cpp
|  
* commit f8a7ea2b043b29c38103d7d40221e9e87b783c1b
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Mon May 14 14:00:33 2007 +0000
| 
| M	R/testcases/test_kernels.R
|  
* commit be08ca64590cc6f4e3d99e6cf333332d74af1146
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 11 17:38:27 2007 +0000
| 
|     classifier interface build fixes for R/Octave
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/gui/Octave.cpp
| M	src/gui/R.cpp
| M	src/guilib/GUIOctave.h
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
|  
* commit 94ebad0c11abcb0250bd9b4cd714aef85aafabe0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 11 15:50:30 2007 +0000
| 
|     add problematic example
| 
| M	matlab/examples/test_sparse_methods.m
| M	src/classifier/svm/SubGradientSVM.cpp
|  
* commit 83c1bc6eb45b796511f0acbe9954d40601019010
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 11 15:03:06 2007 +0000
| 
|     -remove guisvm
|     -convert everything to work with guiclassifier
|     -fix subgradientsvm
| 
| M	matlab/examples/test_sparse_methods.m
| M	src/classifier/LDA.cpp
| M	src/classifier/LPM.cpp
| M	src/classifier/LinearClassifier.cpp
| M	src/classifier/LinearClassifier.h
| M	src/classifier/SparseLinearClassifier.cpp
| M	src/classifier/SparseLinearClassifier.h
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/features/SparseFeatures.h
| M	src/gui/GUI.h
| M	src/gui/Matlab.cpp
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| M	src/gui/TextGUI.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
| D	src/guilib/GUISVM.cpp
| D	src/guilib/GUISVM.h
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/KernelMachine.h
| M	src/lib/Mathematics.h
|  
* commit bb1b47910366cfd90780e51db1371c157b3bb9cc
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri May 11 12:37:16 2007 +0000
| 
| M	R/testcases/read_mfile.R
| M	R/testcases/test_kernels.R
|  
* commit 2f6e17383333d9c3c85b9924398b527601fa07da
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 10 20:54:05 2007 +0000
| 
|     - fix valgrind errors
|     - add classifier interface to octave
| 
| M	matlab/examples/test_sparse_methods.m
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/gui/Octave.cpp
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIOctave.h
|  
* commit 8e6333e029c62b9b669b7490e458245ba5d5ec78
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 10 16:00:50 2007 +0000
| 
|     ...debugging
| 
| A	matlab/examples/test_linear_methods.m
| M	matlab/examples/test_sparse_methods.m
| M	src/classifier/SparseLinearClassifier.h
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/features/SparseFeatures.h
| M	src/guilib/GUIClassifier.cpp
|  
* commit dbcc10a2d3d7045137ec6e5cb346353fb9fa3d48
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu May 10 14:57:15 2007 +0000
| 
| D	R/testcases/test_chi2_kernel.m
| D	R/testcases/test_gaussian_kernel.m
| D	R/testcases/test_kernels.m
| D	R/testcases/test_linear_kernel.m
| D	R/testcases/test_octave.m
| D	R/testcases/test_poly_kernel.m
| D	R/testcases/test_sigmoid_kernel.m
| D	R/testcases/test_wdchar_kernel.m
|  
* commit 645dc7512fa954d099954050ffbf139d7beb0ed6
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu May 10 14:50:00 2007 +0000
| 
| A	R/testcases/test_kernels.R
|  
* commit a225bd2291a7cfa4651b49c9c544c414fd1c6749
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu May 10 14:49:10 2007 +0000
| 
| A	R/testcases/read_mfile.R
|  
* commit 6e6276709ad4bd79a8f5823f26605184becb7d3e
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu May 10 14:48:50 2007 +0000
| 
| A	R/testcases/test_R.R
|  
* commit 73f5f37ed7fc6af15a39f66b733a5eaccae5133e
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu May 10 14:27:47 2007 +0000
| 
|     framework OK, tests not yet implemented
| 
| A	R/testcases/run.sh
| A	R/testcases/test_chi2_kernel.m
| A	R/testcases/test_gaussian_kernel.m
| A	R/testcases/test_kernels.m
| A	R/testcases/test_linear_kernel.m
| A	R/testcases/test_octave.m
| A	R/testcases/test_poly_kernel.m
| A	R/testcases/test_sigmoid_kernel.m
| A	R/testcases/test_wdchar_kernel.m
|  
* commit d19f86c140649508c44b4c63866e5e9e1c78cff9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 10 13:00:29 2007 +0000
| 
|     remove unused variable
| 
| M	src/guilib/GUIClassifier.cpp
|  
* commit 0c03469aba79a7b8c4677eb44a171d7dc70a4cb5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 10 12:58:50 2007 +0000
| 
|     fix a LDA bias sign bug
| 
| A	matlab/examples/lda_classification.m
| M	matlab/examples/wds_consensus.m
| M	src/classifier/LDA.cpp
| M	src/guilib/GUIClassifier.cpp
|  
* commit 9a9d4b968969c79b34769add4864da22b3121f30
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 10 12:23:55 2007 +0000
| 
|     generic sg('new_classifier FOO') / sg('classify')
|     functionality for lots of FOO
| 
| A	matlab/examples/test_sparse_methods.m
| M	src/classifier/LDA.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/qpbsvmlib.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/lib/Mathematics.h
| M	src/lib/common.h
|  
* commit 162f65fc662a714a5f1ff3918031c0eadb3a2199
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 9 14:02:16 2007 +0000
| 
|     make gbpsvmlib/gmnplib use CMath::max/min/abs
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/gmnplib.cpp
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/classifier/svm/qpbsvmlib.h
| M	src/lib/Mathematics.h
|  
* commit da017db2b91e720bce56708606580dd7285e7b54
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 9 07:18:17 2007 +0000
| 
|     add vojtechs QP solver
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| A	src/classifier/svm/qpbsvmlib.cpp
| A	src/classifier/svm/qpbsvmlib.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
|  
* commit 1bb7427f67ecc55acc3a572d7c4513a184f1780b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 8 21:30:19 2007 +0000
| 
|     add helper functions for sparse feature vectors:
|     
|     to compute dot products:
|      sparse x sparse
|      sparse x dense
|     to add sparse vectors to dense ones
|     
|     and let the sparse linear/poly kernel make use of them
| 
| M	src/classifier/Classifier.h
| M	src/classifier/svm/SVMPerf.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/features/SparseFeatures.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparsePolyKernel.cpp
| M	src/lib/Mathematics.h
|  
* commit 1e9e92d7d57d8d638d9d96084234ab7bac078147
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon May 7 17:43:41 2007 +0000
| 
| M	matlab/examples/test_wdshift_position_weights.m
|  
* commit bf90ba0e7f526cc589fb31c31981ec20641541c5
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon May 7 17:43:21 2007 +0000
| 
|     Implemented extensions in order to allow position weights per example.
|     Unsolved issues:
|     * normalization -> switch it off
|     * linadd & batch_computation -> switch it off
|     
|     An example script is given in matlab/examples/test_wdshift_position_weights.m.
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
|  
* commit e9cbd5dff0ee09581cbe1b69a06b3d8e2f8b3265
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon May 7 17:43:09 2007 +0000
| 
|     Implemented extensions in order to allow position weights per example.
|     Unsolved issues:
|     * normalization -> switch it off
|     * linadd & batch_computation -> switch it off
|     
|     An example script is given in matlab/examples/test_wdshift_position_weights.m.
| 
| A	matlab/examples/test_wdshift_position_weights.m
|  
* commit aa88ca14eb3aed9946a1b67ca3ef9cdbbc2c448e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 30 13:54:10 2007 +0000
| 
|     this infact is a scenario running on 4 threads, with lots of kernels and
|     chained preprocessors.  some kernels support linadd, some batch computation
|     (linadd/batch is all emulated for kernels that don't support it). so if this
|     works we have a good indication that lots of other stuff will
| 
| A	matlab/examples/test_complex_scenario.m
| D	matlab/examples/test_wdshift_kernel.m
|  
* commit 03b8dc3e7c8ed9fbb8a93d42cd9561976d9b0493
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 30 13:50:45 2007 +0000
| 
|     - fix threading bugs in WDS kernel (it was never working correctly with > 1
|     		thread), due to position_mask and max_shift vec being member variables.
|     
|     solution: make max_shift_vec a local variable and remove (the anyway unused)
|     	position_mask completely
| 
| A	matlab/examples/test_wds_kernel.m
| M	matlab/examples/test_wdshift_kernel.m
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
|  
* commit 050f0408ebb9d04411866aa682fa6ee1150aae40
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 30 07:51:13 2007 +0000
| 
|     print normalization_cons
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
|  
* commit 22c7fd3a41375682fe1e89948196d5c98c487d01
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 30 07:41:33 2007 +0000
| 
|     forgot adding lin contributions for last thread
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/kernel/CombinedKernel.cpp
|  
* commit e3cdc9ed4117fb7b67d3c311da9720ae4a7e03a9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 29 18:59:18 2007 +0000
| 
|     Fixed a stupid (variable name collision, t was used for time and threads in 2
|     		nested loops) SVM light training bug which occurred only with
|     
|     	threads>=2,
|     	linadd=0,
|     	batch_computation=0
|     	svm -> reactivate_inactive examples
|     
|     (got triggered by the test_wd_wds_parallel.m example). Judging from (previous)
|     comments in the code it looks like Gunnar has seen this at some point but
|     forgot to tell me...
| 
| M	matlab/examples/test_wd_wds_parallel.m
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 842600acfddbf69d30487911f1a59987bdbc8000
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 29 17:07:10 2007 +0000
| 
|     * remove obsolete/nonworking examples
|     * adjust examples to work with new stringfeatures
|     * fix one class svm crasher
| 
| M	matlab/examples/entropy.m
| D	matlab/examples/svmlight_hang_test.m
| M	matlab/examples/test_combined.m
| M	matlab/examples/test_combined2.m
| M	matlab/examples/test_custom_kernel.m
| D	matlab/examples/test_hmm.m
| D	matlab/examples/test_hmm_matlab.m
| M	matlab/examples/test_kernel_optimization.m
| D	matlab/examples/test_matlab_interface.m
| M	matlab/examples/test_one_class_svm.m
| D	matlab/examples/test_rbf_kernel.m
| M	matlab/examples/test_regression_linadd.m
| D	matlab/examples/test_svm.m
| M	matlab/examples/test_wd_linadd.m
| M	matlab/examples/test_wdshift_kernel.m
| D	matlab/examples/test_wdshiftphyl_kernel.m
| M	matlab/testcases/test_wdchar_kernel.m
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/guilib/GUIFeatures.cpp
|  
* commit ac309f569feb2c6e250f69f7ca584de366191bc0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 29 12:37:41 2007 +0000
| 
|     * remove PHYL kernel completely
|     * remove nonsense normalisation in WD*kernels (sqrtdiag lhs/rhs etc),
|     	the wd/wds kernel really need merging
|     * fix test_wdshift_kernel script
|     * add stubs for vojtechs subgradient svm and svmperf
| 
| M	matlab/examples/test_wdshift_kernel.m
| M	src/classifier/SparseLinearClassifier.cpp
| M	src/classifier/SparseLinearClassifier.i
| A	src/classifier/svm/SVMPerf.cpp
| A	src/classifier/svm/SVMPerf.h
| A	src/classifier/svm/SVMPerf.i
| A	src/classifier/svm/SubGradientSVM.cpp
| A	src/classifier/svm/SubGradientSVM.h
| A	src/classifier/svm/SubGradientSVM.i
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/lib/common.h
|  
* commit a7637d3bfccd661493e907b417ac72440fe2ee6e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 25 10:10:17 2007 +0000
| 
|     fix the 2-class case by introducing sign=model->label[0]
| 
| M	src/classifier/svm/LibSVM.cpp
|  
* commit e13d0fdb731ece63d5a98b6e26682991509399b4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 25 09:50:49 2007 +0000
| 
|     * multiclass libsvm fix for label permutations:
|     	libsvm internally relabels all examples and stores that label in model->label.
|     	thus the svm pair (i,j) translates to (model->label[i], model->label[j]), so
|     	the solution is to compute the svm index for the
|     	(model->label[i], model->label[j]) pair
|     * note that if (model->label[i] > model->label[j]), signs have to be flipped, which
|     also occured to us in the 2-class case, as libsvm internally uses +1 for the first
|     occuring class and -1 for the other (which is why have to flip signs if the
|     		first label<0) for 2-class problems too.
|     * apapart from that it delivers very similar results to vojtech's L2-multiclass b-svm
| 
| M	src/classifier/svm/LibSVM_multiclass.cpp
|  
* commit dc0a3562bfbf69e0c598c10866f147d5d5395af9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 25 08:32:01 2007 +0000
| 
|     * add LibSVM multiclass support + test script
|     * currently labelings maybe shuffled similiar to what we had with 2-class libsvm
|     * reshuffle python classifiers/regressors, add the other missing svms to the python interface
|     * apply dos2unix on gmnp svm
| 
| M	matlab/examples/svm_multiclass.m
| M	src/classifier/Classifier.i
| M	src/classifier/KernelPerceptron.i
| M	src/classifier/LDA.i
| M	src/classifier/LPM.i
| M	src/classifier/LinearClassifier.i
| M	src/classifier/Perceptron.i
| M	src/classifier/SparseLinearClassifier.i
| M	src/classifier/svm/GMNPSVM.cpp
| M	src/classifier/svm/GMNPSVM.i
| M	src/classifier/svm/GNPPSVM.i
| A	src/classifier/svm/GPBTSVM.i
| M	src/classifier/svm/LibSVM.i
| A	src/classifier/svm/LibSVM_multiclass.cpp
| A	src/classifier/svm/LibSVM_multiclass.h
| A	src/classifier/svm/LibSVM_multiclass.i
| M	src/classifier/svm/LibSVM_oneclass.cpp
| M	src/classifier/svm/LibSVM_oneclass.h
| A	src/classifier/svm/LibSVM_oneclass.i
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/classifier/svm/MultiClassSVM.h
| A	src/classifier/svm/MultiClassSVM.i
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM.i
| M	src/classifier/svm/SVMLin.i
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_libsvm.h
| M	src/classifier/svm/SVM_light.i
| M	src/classifier/svm/gmnplib.cpp
| M	src/distance/DistanceMachine.i
| M	src/guilib/GUISVM.cpp
| M	src/kernel/KernelMachine.i
| M	src/lib/common.h
| M	src/regression/Regression.i
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/LibSVR.i
| M	src/regression/svr/SVR_light.i
|  
* commit 23bb5d30eadd63fa6c59ce08f06f108acd103bc8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 23 13:48:05 2007 +0000
| 
|     * add shrinking method of libsvm 2.84
|     * implement end test 'finding the most likely sequence'
|       for spectrum kernel
|     * add sg('get_SPEC_consensus') command + matlab example,
|     * fix svm_lin/svm .py scripts (axis tight/dynamically adjust interval)
| 
| A	matlab/examples/test_spec_consensus.m
| M	python-modular/examples/numpy_svm_matplotlib.py
| M	python-modular/examples/numpy_svmlin_matplotlib.py
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_libsvm.h
| M	src/features/StringFeatures.h
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
|  
* commit d36f21036b874d526e41ad715cd5a77563b31af5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 20 12:57:21 2007 +0000
| 
|     add consensus test script & example
| 
| A	matlab/examples/test_wds_consensus.m
| M	matlab/examples/wds_consensus.m
|  
* commit edb911566533251ff77db1a3f77e80d06f8adc9e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 20 12:42:47 2007 +0000
| 
|     fix crashes when calling obtain_by_sliding_window
|     or obtain_from_position_list - TWICE
| 
| M	python-modular/examples/stringfeatures.py
| M	src/features/StringFeatures.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Trie.cpp
|  
* commit a6268084802aef1a481e95f1de9eacc7e7f8e590
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 20 08:55:37 2007 +0000
| 
|     get_WD_consensus is finally working correctly.
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 1648019b3850a30a728836ae8115c05078a6c599
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 17 19:18:59 2007 +0000
| 
|     b0rken: backtracking needs to go over full tree (max. all 4^d strings)
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Trie.cpp
|  
* commit 19a305624685b7a81d92f29ac0b3bdd1ebdbea63
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 16 18:47:27 2007 +0000
| 
|     consensus debug example
| 
| M	matlab/examples/wds_consensus.m
|  
* commit a8933a345d3270b1f6587f22dd49a2eebf51fe19
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 16 18:46:47 2007 +0000
| 
|     display matrix column major + further consensus work
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Mathematics.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 28d5ecc36e4123a9afbb943fee40e8b130ec4057
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 16 10:38:49 2007 +0000
| 
|     +fix string/char features, kernels before based on charfeatures should work
|     again in matlab
|     +add code + example for consensus computation for WDS kernel
| 
| A	matlab/examples/wds_consensus.m
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit db3de68fb29adafdd8b72c76e4e0f5a1cc304fc2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 15 17:02:02 2007 +0000
| 
| M	matlab/examples/string_features.m
|  
* commit 459795057f87b8400f11d42479e22c2be6a40385
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 15 16:58:47 2007 +0000
| 
|     -fix from_position_list for TEST data (strlen(TEST) == 4 !!!)
|     -start impl. of consensus
|     -whitespace cleanups
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 72becea7dab272542e944aab5b83404e8c680ff5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 12 13:53:04 2007 +0000
| 
|     -add multiclass svm wrapper
|     -add L2-b-svm multiclass matlab example
|     -vojtechs multiclass svm is now working
| 
| A	matlab/examples/svm_multiclass.m
| M	src/classifier/svm/GMNPSVM.cpp
| M	src/classifier/svm/GMNPSVM.h
| A	src/classifier/svm/MultiClassSVM.cpp
| A	src/classifier/svm/MultiClassSVM.h
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/gmnplib.cpp
| M	src/classifier/svm/gmnplib.h
| M	src/guilib/GUIPython.cpp
|  
* commit 7f19df189128eb39985651a7faf8f0297ea72e23
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 5 09:26:32 2007 +0000
| 
|     + add vojtech's multiclass bsvm
| 
| A	src/classifier/svm/GMNPSVM.cpp
| A	src/classifier/svm/GMNPSVM.h
| A	src/classifier/svm/GMNPSVM.i
| A	src/classifier/svm/gmnplib.cpp
| A	src/classifier/svm/gmnplib.h
| M	src/classifier/svm/gnpplib.h
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/guilib/GUISVM.cpp
| M	src/lib/common.h
|  
* commit 1ba061d4463d213bef7c31c7d94ecadb579ffff4
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 4 14:34:55 2007 +0000
| 
|     wds-kernel encluded
| 
| M	python-modular/testcases/mfiles/Chi2Kernel_10.m
| M	python-modular/testcases/mfiles/GaussianKernel_10_13.m
| M	python-modular/testcases/mfiles/LinearKernel_False.m
| M	python-modular/testcases/mfiles/LinearKernel_True.m
| M	python-modular/testcases/mfiles/PolyKernel_False_10_False_3.m
| M	python-modular/testcases/mfiles/PolyKernel_False_10_True_3.m
| M	python-modular/testcases/mfiles/PolyKernel_True_10_False_3.m
| M	python-modular/testcases/mfiles/PolyKernel_True_10_True_3.m
| M	python-modular/testcases/mfiles/SigmoidKernel_05_10_07.m
| M	python-modular/testcases/mfiles/SigmoidKernel_11_10_13.m
| D	python-modular/testcases/mfiles/WeightedDegreeCharKernel_True_DNA_20_True_3.m
| A	python-modular/testcases/mfiles/WeightedDegreePositionStringKernel_DNA_60_20.m
| M	python-modular/testcases/test_kernels.py
|  
* commit 292ebe788e312e5b9567ffe72fe8dd3325da138a
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 4 12:54:55 2007 +0000
| 
| M	src/guilib/GUIPython.cpp
|  
* commit d91e86ad339cc460962ccafca372c6465476f119
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 4 08:28:59 2007 +0000
| 
|     solved transpose-problem of old python interface
| 
| M	src/guilib/GUIPython.cpp
|  
* commit c8021ee978e60bd6d72236bf31cdc27c71ad8848
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 4 07:48:38 2007 +0000
| 
|     Enable tests for Python interface
| 
| A	python/testcases/m_print.py
| A	python/testcases/read_mfile.py
| A	python/testcases/run.sh
| A	python/testcases/test.py
| A	python/testcases/test_kernels.py
| A	python/testcases/test_python
|  
* commit e01dc3facfac4a2f53788de202f25fb43d5ce403
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 2 12:08:22 2007 +0000
| 
|     R/python/octave interface compile fixes + trivial warning in LIK
| 
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIR.cpp
| M	src/kernel/LocalityImprovedStringKernel.cpp
|  
* commit bef2e1ecf8ae85e331bb673b2f353cc98d4ef363
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:45 2007 +0000
| 
|     CSimpleLocalityImprovedStringKernel: simplify init()
|     
|     This trivial patch gets rid of an identation by immediately returning
|     false in case result==false.
| 
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
|  
* commit 7cdac91e9120c12b8e0d96272cef26ff6a895036
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:44 2007 +0000
| 
|     CSimpleLocalityImprovedStringKernel: change type of size parameter from LONG to INT
| 
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/kernel/SimpleLocalityImprovedStringKernel.h
|  
* commit 8d9d1390e9826ccd122d62d1fb152e72a2a4aa9f
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:44 2007 +0000
| 
|     SimpleLocalityImprovedStringKernel: trivial whitespace cleanups
| 
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/kernel/SimpleLocalityImprovedStringKernel.h
|  
* commit fd3ddda21d7ac580c3a6f87b2c90547047f459b3
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:43 2007 +0000
| 
|     SimpleLocalityImprovedCharKernel -> SimpleLocalityImprovedStringKernel conversion
|     
|     This gets rid of the last remaining char kernel.
| 
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/Kernel.i
| D	src/kernel/SimpleLocalityImprovedCharKernel.cpp
| D	src/kernel/SimpleLocalityImprovedCharKernel.h
| D	src/kernel/SimpleLocalityImprovedCharKernel.i
| A	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| A	src/kernel/SimpleLocalityImprovedStringKernel.h
| A	src/kernel/SimpleLocalityImprovedStringKernel.i
|  
* commit 87f7bd059d62ad03bc03402103489e20a4c07408
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:43 2007 +0000
| 
|     make the matlab interface work again
|     
|     In the beginning was the plan, and then the specification;
|     And the plan was without form, and the specification was void.
|     
|     [...]
|     
|     And the President looked upon the product, and saw that it was very good.
| 
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIMatlab.cpp
|  
* commit a824911a585f7b3973f007b96087f269d1249fb8
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:42 2007 +0000
| 
|     remove WeightedDegreeCharKernel and WeightedDegreePositionCharKernel
|     
|     These have been replaced by the corresponding string kernel.
| 
| M	src/kernel/Kernel.i
| D	src/kernel/WeightedDegreeCharKernel.cpp
| D	src/kernel/WeightedDegreeCharKernel.h
| D	src/kernel/WeightedDegreeCharKernel.i
| D	src/kernel/WeightedDegreePositionCharKernel.cpp
| D	src/kernel/WeightedDegreePositionCharKernel.h
| D	src/kernel/WeightedDegreePositionCharKernel.i
|  
* commit 5a5772b3fcb352e9a07f335e72d3bddd7d30ebca
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:41 2007 +0000
| 
|     LinearStringKernel: simplify compute_optimized()
| 
| M	src/kernel/LinearStringKernel.cpp
|  
* commit 3c1b42c2517af2ca99b85e76044817a37d988064
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:41 2007 +0000
| 
|     LinearStringKernel: Use clear_normal() to initialize the normal vector.
| 
| M	src/kernel/LinearStringKernel.cpp
|  
* commit b39b3b3da11b624c28d185c7a1f28f9d87746d98
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:41 2007 +0000
| 
|     LinearStringKernel: Kill result variable
|     
|     Also, add a comment to don't open code the dot product but to use
|     the corresponding function from Mathematics.h once this works with
|     templates.
| 
| M	src/kernel/LinearStringKernel.cpp
|  
* commit b02d66f1f6852ba2b64e7b7a7522b7d110eb7282
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:38 2007 +0000
| 
|     LinearStringKernel: Simplify clear_normal()
|     
|     Just use memset() to zero-out the array.
| 
| M	src/kernel/LinearStringKernel.cpp
|  
* commit 6f8a2ff9ba0017276351026e9ae48884b133b931
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:38 2007 +0000
| 
|     LinearStringKernel: Kill pointless cast
| 
| M	src/kernel/LinearStringKernel.cpp
|  
* commit d1c05eaa2a0f474c5a103cd5e2fbf6c13482c996
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:37 2007 +0000
| 
|     CLinearStringKernel: Change type of size parameter from LONG to INT
| 
| M	src/kernel/LinearStringKernel.cpp
| M	src/kernel/LinearStringKernel.h
|  
* commit e532d93679629b9eb0d3f14afbd390517b2369a5
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:37 2007 +0000
| 
|     LinearStringKernel: Trivial whitespace cleanups
| 
| M	src/kernel/LinearStringKernel.cpp
| M	src/kernel/LinearStringKernel.h
|  
* commit f6160a9515708a5cddb50c7b68646a8ec44bf4d3
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:37 2007 +0000
| 
|     rename LinearCharKernel to LinearStringKernel
|     
|     and make it compile again.
| 
| M	src/kernel/Kernel.i
| D	src/kernel/LinearCharKernel.cpp
| D	src/kernel/LinearCharKernel.h
| D	src/kernel/LinearCharKernel.i
| A	src/kernel/LinearStringKernel.cpp
| A	src/kernel/LinearStringKernel.h
| A	src/kernel/LinearStringKernel.i
|  
* commit 36dad3c0d0215e755dabe797ccdc26e9343d779d
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:36 2007 +0000
| 
|     Remove WeightedDegreeCharKernelPolyA and WeightedDegreePositionPhylCharKernel
|     
|     They are unused according to Soeren, so changing them to become a
|     String kernel is a waste of time.
|     
|     deleted:    trunk/src/kernel/WeightedDegreeCharKernelPolyA.cpp
|     deleted:    trunk/src/kernel/WeightedDegreeCharKernelPolyA.h
|     deleted:    trunk/src/kernel/WeightedDegreeCharKernelPolyA.i
|     deleted:    trunk/src/kernel/WeightedDegreePositionPhylCharKernel.cpp
|     deleted:    trunk/src/kernel/WeightedDegreePositionPhylCharKernel.h
| 
| D	src/kernel/WeightedDegreeCharKernelPolyA.cpp
| D	src/kernel/WeightedDegreeCharKernelPolyA.h
| D	src/kernel/WeightedDegreeCharKernelPolyA.i
| D	src/kernel/WeightedDegreePositionPhylCharKernel.cpp
| D	src/kernel/WeightedDegreePositionPhylCharKernel.h
|  
* commit 2ce107af9684def025b25986e2ac336b0b243152
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:35 2007 +0000
| 
|     PolyMatchStringKernel.i: Fix missing char->string replacement
| 
| M	src/kernel/PolyMatchStringKernel.i
|  
* commit 82f4f00c89bf33091a0f925a2a0d56ff79aeb2eb
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:35 2007 +0000
| 
|     PolyMatchStringKernel: Simplify compute()
|     
|     Also, change the "size" parameter of the contructor from LONG to INT
| 
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchStringKernel.h
|  
* commit b614ce43c3c68a770a4d6dc304c6f3ef00fcd058
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:35 2007 +0000
| 
|     PolyMatchStringKernel: use init_sqrt_diag()
| 
| M	src/kernel/PolyMatchStringKernel.cpp
|  
* commit 974e0be0637e06992f7f27e2cd2df6dfc2598402
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:34 2007 +0000
| 
|     PolyMatchStringKernel: Kill pointless initializations with 1
| 
| M	src/kernel/PolyMatchStringKernel.cpp
|  
* commit f5539d9459b54eb6ae65a3fb9bf47d6186fad961
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:34 2007 +0000
| 
|     move init_sqrt_diag() from CFixedDegreeStringKernel to CKernel
|     
|     It is needed for other kernels as well, so this will aid in
|     removing duplicated code.
| 
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
|  
* commit a83b4d4c72b26b0689cd0707e8b7c2d0f3f9e70d
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:33 2007 +0000
| 
|     char -> string conversion for kernel/Kernel.i
| 
| M	src/kernel/Kernel.i
|  
* commit f25b4af34e5b4c923563fa56657420a01cd4e6ea
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:33 2007 +0000
| 
|     PolyMatchStringKernel: more trivial whitespace cleanups
| 
| M	src/kernel/PolyMatchStringKernel.cpp
|  
* commit 6e76a9cde837e0895ee60a18a87be54ef9d050e5
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:32 2007 +0000
| 
|     PolyMatchStringKernel: Trivial whitespace cleanup
| 
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchStringKernel.h
|  
* commit ebfd7bd87ec344f27a0a9e8d04820b494bcd4d55
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:32 2007 +0000
| 
|     PolyMatchStringKernel: replace char features by string features
| 
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchStringKernel.h
| M	src/kernel/PolyMatchStringKernel.i
|  
* commit faa1815fbd74df887e19363b098e4d87b8979d6e
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:31 2007 +0000
| 
|     rename PolyMatchCharKernel to PolyMatchStringKernel
|     
|     renamed:    trunk/src/kernel/PolyMatchCharKernel.cpp -> trunk/src/kernel/PolyMatchStringKernel.cpp
|     renamed:    trunk/src/kernel/PolyMatchCharKernel.h -> trunk/src/kernel/PolyMatchStringKernel.h
|     renamed:    trunk/src/kernel/PolyMatchCharKernel.i -> trunk/src/kernel/PolyMatchStringKernel.i
| 
| M	src/guilib/GUIKernel.cpp
| D	src/kernel/PolyMatchCharKernel.cpp
| D	src/kernel/PolyMatchCharKernel.h
| D	src/kernel/PolyMatchCharKernel.i
| A	src/kernel/PolyMatchStringKernel.cpp
| A	src/kernel/PolyMatchStringKernel.h
| A	src/kernel/PolyMatchStringKernel.i
|  
* commit d33e9333fa0b4f19be4329f0ccf5b5623f5e0880
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:30 2007 +0000
| 
|     FixedDegreeStringKernel: Introduce init_sqrt_diag()
|     
|     This private method computes the vector containing the square root
|     of the diagonal elements of the kernel. This computation is needed
|     twice in the current code, so it makes sense to move that code into
|     its own helper function.
| 
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
|  
* commit b1f62cf8be7bff37c9ea2de85e1c97c74ce5277f
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:30 2007 +0000
| 
|     FixedDegreeStringKernel: Kill pointless initialization
|     
|     The entries of sqrtdiag_lhs and sqrtdiag_rhs are all set to one, only
|     to reset them to their proper value a few lines later (without using
|     them in between of course). So kill that pointless initialization.
| 
| M	src/kernel/FixedDegreeStringKernel.cpp
|  
* commit 33ec791d0990c90498cf65ca84d23c9c6c7d62c5
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:29 2007 +0000
| 
|     FixedDegreeStringKernel: Fix ASSERT() placement
|     
|     It's pointless to check for memory allocation failure _after_ using
|     the return value of new.
| 
| M	src/kernel/FixedDegreeStringKernel.cpp
|  
* commit 4a1a197a62cf4545c6031abe689246b2b79d9798
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:29 2007 +0000
| 
|     FixedDegreeStringKernel: Kill pointless NULL assignment
|     
|     A new value is assigned to sqrtdiag_lhs one line below.
| 
| M	src/kernel/FixedDegreeStringKernel.cpp
|  
* commit 65d235087531380dfaf7a9660f1ba4c4770d58bb
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:28 2007 +0000
| 
|     FixedDegreeStringKernel: Use DREAL instead of double
|     
|     We're returning DREAL, so this makes more sense.
| 
| M	src/kernel/FixedDegreeStringKernel.cpp
|  
* commit 5dd8c560a4a1c4e833c756dcc675f07c700ba61a
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:28 2007 +0000
| 
|     FixedDegreeStringKernel: Simplify compute()
|     
|     Only the product of the squareroots of lhs and rhs
|     is used, so compute it in one go.
| 
| M	src/kernel/FixedDegreeStringKernel.cpp
|  
* commit 61ea88346b16ba17ba45a67fe1e68fdbf1f474d6
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:28 2007 +0000
| 
|     FixedDegreeStringKernel: Trivial whitespace fixes
| 
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
|  
* commit b1283113b3cde7586e5173a4dc1e89eef2f385bf
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:27 2007 +0000
| 
|     FixedDegreeStringKernel: replace char features by string features
| 
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/FixedDegreeStringKernel.i
|  
* commit 58386a2039d05d7fcd5a89b4151c9b811db4c5ad
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:27 2007 +0000
| 
|     Rename FixedDegreeCharKernel to FixedDegreeStringKernel
|     
|     renamed:    trunk/src/kernel/FixedDegreeCharKernel.cpp -> trunk/src/kernel/FixedDegreeStringKernel.cpp
|     renamed:    trunk/src/kernel/FixedDegreeCharKernel.h -> trunk/src/kernel/FixedDegreeStringKernel.h
|     renamed:    trunk/src/kernel/FixedDegreeCharKernel.i -> trunk/src/kernel/FixedDegreeStringKernel.i
| 
| M	src/guilib/GUIKernel.cpp
| D	src/kernel/FixedDegreeCharKernel.cpp
| D	src/kernel/FixedDegreeCharKernel.h
| D	src/kernel/FixedDegreeCharKernel.i
| A	src/kernel/FixedDegreeStringKernel.cpp
| A	src/kernel/FixedDegreeStringKernel.h
| A	src/kernel/FixedDegreeStringKernel.i
|  
* commit 865ac6603ee728aa50b2c88ba0c6e4b59db00f7e
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:26 2007 +0000
| 
|     LocalityImprovedStringKernel: Kill another instance of open coded pow()
| 
| M	src/kernel/LocalityImprovedStringKernel.cpp
|  
* commit 13556f7b1ecf7d80c35c199c5ebe77ab698fe94b
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:25 2007 +0000
| 
|     LocalityImprovedStringKernel: Final whitespace cleanups
| 
| M	src/kernel/LocalityImprovedStringKernel.cpp
|  
* commit 4e090e534000eedee09217e5d937c46bf4f31c5d
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:25 2007 +0000
| 
|     LocalityImprovedStringKernel: Don't open code the pow() function.
| 
| M	src/kernel/LocalityImprovedStringKernel.cpp
|  
* commit b260ee45ab20b1f79bcda0e4e46932be60b4eb5b
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:25 2007 +0000
| 
|     LocalityImprovedStringKernel: More trivial whitespace cleanups
|     
|     Replace spaces by tabs and add additional spaces according to Coding style.
| 
| M	src/kernel/LocalityImprovedStringKernel.cpp
|  
* commit b2f8409904fc7f4b257ba2422257ae82dc164f6c
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:24 2007 +0000
| 
|     LocalityImprovedStringKernel: Simplify for loop
|     
|     One line of code is obviously equivalent to the six lines we've had before.
| 
| M	src/kernel/LocalityImprovedStringKernel.cpp
|  
* commit 3cda91f53966a61c0c07008afc7a4df83eb672b1
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:24 2007 +0000
| 
|     LocalityImprovedStringKernel: Trivial whitespace cleanup
|     
|     Only replace leading spaces by tabs.
| 
| M	src/kernel/LocalityImprovedStringKernel.cpp
|  
* commit 810251c5447f3c8a7f3ef903d09ac41520af8a34
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:23 2007 +0000
| 
|     LocalityImprovedStringKernel: minor cleanup in init()
| 
| M	src/kernel/LocalityImprovedStringKernel.cpp
|  
* commit 99d104e0b46acff55437deae2753a692ba2cc1d4
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:23 2007 +0000
| 
|     LocalityImprovedStringKernel: replace char features by string features
| 
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.h
| M	src/kernel/LocalityImprovedStringKernel.i
|  
* commit 8b595103594775a4ea4b92e1d8ffe922d948d59c
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:21 2007 +0000
| 
|     rename LocalityImprovedCharKernel to LocalityImprovedStringKernel
|     
|     The change to GUIKernel.cpp was neccessary to make it compile again.
|     
|     modified:   trunk/src/guilib/GUIKernel.cpp
|     renamed:    trunk/src/kernel/LocalityImprovedCharKernel.cpp -> trunk/src/kernel/LocalityImprovedStringKernel.cpp
|     renamed:    trunk/src/kernel/LocalityImprovedCharKernel.h -> trunk/src/kernel/LocalityImprovedStringKernel.h
|     renamed:    trunk/src/kernel/LocalityImprovedCharKernel.i -> trunk/src/kernel/LocalityImprovedStringKernel.i
| 
| M	src/guilib/GUIKernel.cpp
| D	src/kernel/LocalityImprovedCharKernel.cpp
| D	src/kernel/LocalityImprovedCharKernel.h
| D	src/kernel/LocalityImprovedCharKernel.i
| A	src/kernel/LocalityImprovedStringKernel.cpp
| A	src/kernel/LocalityImprovedStringKernel.h
| A	src/kernel/LocalityImprovedStringKernel.i
|  
* commit 00eaf6e97e35eea2314f20c1c9394cd6fc7ffdc7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Mar 31 12:59:37 2007 +0000
| 
|     readd the undefined suppress to the configure options
|     whether the rest works only time will tell :-)
| 
| M	src/configure
|  
* commit cfc9c19e11366b8bcb282df0680056d31465c592
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Mar 25 17:52:24 2007 +0000
| 
|     fixed some problems on intel macs... soeren, please check it.
|     G
| 
| M	src/Makefile
|  
* commit 47bd88eb03f2f72c2b6c9847de1dc04dfeecb71b
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Mar 22 06:36:52 2007 +0000
| 
|     fixed some configure issues on imacs. seems to work.
| 
| M	src/configure
|  
* commit f154c4e4126cac0e959ecb584a444ef9f3d1c7af
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 14 13:20:24 2007 +0000
| 
|     test script
| 
| M	matlab/examples/string_features.m
|  
* commit 3b4ef34d8f29221ec471f328f3b642ece880c0fc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 14 13:20:12 2007 +0000
| 
|     WD kernel string support
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIMatlab.cpp
|  
* commit b8c46439ff97f2ef4f26d117c29873f69f971098
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Wed Mar 14 11:54:27 2007 +0000
| 
|     Trie.h: Simplify check_treemem()
|     
|     and reduce line length and white space usage according
|     to the shogun coding style.
| 
| M	src/lib/Trie.h
|  
* commit 97f49106921fe2c375507468dfd9081fac233556
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Wed Mar 14 11:54:27 2007 +0000
| 
|     Trie.h: Trivial whitespace cleanups
| 
| M	src/lib/Trie.h
|  
* commit 9fcd1f7d2934cdaf9aa01bdfc73a2828bec5b0ce
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 14 09:50:06 2007 +0000
| 
|     matlab example on how to use sliding window
| 
| A	matlab/examples/string_features.m
|  
* commit 8dd92a40a3aeae5b294e89fff0103f63550523e9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 14 09:37:50 2007 +0000
| 
|     matlab interface compile fix
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
|  
* commit 8798bec92bea89684891967dba4c18a995658d2d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 14 09:25:27 2007 +0000
| 
|     octave example for sliding window
| 
| A	octave/examples/stringfeatures.m
|  
* commit 445581378feb96d9a8abe39f6b1f681ee6b1c5d9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 14 09:20:19 2007 +0000
| 
|     obtain by sliding window / by position list
| 
| M	python-modular/examples/stringfeatures.py
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/gui/Matlab.cpp
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/guilib/GUIOctave.cpp
| M	src/kernel/Kernel.i
| M	src/kernel/WeightedDegreeCharKernel.h
| A	src/kernel/WeightedDegreeStringKernel.cpp
| A	src/kernel/WeightedDegreeStringKernel.h
| A	src/kernel/WeightedDegreeStringKernel.i
| M	src/lib/common.h
|  
* commit 48fb6ab111497ce5cd937793b38bc96a56cd3fad
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 13 09:25:50 2007 +0000
| 
|     by default use linadd
| 
| M	src/guilib/GUISVM.cpp
|  
* commit 8cf98ffc4bc4ca9516470af31736a1bcd94e4115
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 12 19:21:50 2007 +0000
| 
|     also add missing init to wds -string kernel
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
|  
* commit 1ad3815880b4ce94cef4d4cb997ce22baf698ae4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 12 16:50:57 2007 +0000
| 
|     fix WDS (missing NULL init of shifts)
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit c5463478c27f4a890257874363e2d7121daf5578
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 12 11:46:13 2007 +0000
| 
|     snapshot for non DEBIAN
| 
| M	Makefile
|  
* commit cdd53dddd6d38954dba20fe8b52999795bca5ff7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 12 11:42:59 2007 +0000
| 
|     * merge changes from 0.3.2
|     * add sliding window stringfeatures example
|     * allow features to be None for WDS kernel
| 
| M	Makefile
| M	R/Makefile
| M	R/sg/DESCRIPTION
| M	python-modular/examples/stringfeatures.py
| M	src/features/StringFeatures.h
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.i
|  
* commit f757ed31cbb1a26d471a0b8255b223a983505396
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 11 09:31:42 2007 +0000
| 
|     svm lin example
| 
| A	python-modular/examples/numpy_svmlin_matplotlib.py
|  
* commit 6097743c494a2260325b59ace5421b118f9b294b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 9 16:49:32 2007 +0000
| 
|     filter swig array Overloaded warnings
| 
| M	src/lib/Array.i
| M	src/lib/Array2.i
| M	src/lib/Array3.i
|  
* commit ae0240454b0f682e39b499ea2ec5c0396ff4ec0b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 9 14:55:42 2007 +0000
| 
|     add locality improved kernel example
| 
| A	octave/examples/lik_kernel.m
| M	src/kernel/SimpleLocalityImprovedCharKernel.cpp
|  
* commit a8eee00ec06c42f7deb89f287bd817b252b04564
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 9 09:17:56 2007 +0000
| 
|     * allow the alphabet type in the Stringfeatures constructor
|     * add support for wds CHAR kernel / update example
|     
|     important issue valid for all kernels:
|     	in init(lhs, rhs), the first call should be SuperClass::init(lhs,rhs);
|     	as this will check for NULL ptr, valid feature class & type
|     
|     this was broken for the WD* kernels and lead to hard to track erros.
| 
| M	python-modular/examples/wds_kernel.py
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.i
| M	src/features/StringFeatures.h
| M	src/kernel/DistanceKernel.cpp
| M	src/kernel/SpectrumKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernelPolyA.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.i
| M	src/kernel/WeightedDegreePositionPhylCharKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
|  
* commit 2c80bbe633c1826b7ac013395ff76fd0820d5512
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 9 08:00:41 2007 +0000
| 
|     wds STRING kernel now works from inside of python.
|     
|     although it means code duplication, I will merge changes to the wds CHAR kernel
| 
| M	python-modular/examples/wds_kernel.py
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.i
|  
* commit 59012984dd0fbe07709a5d7ab99cfface0df8ea6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 8 16:05:22 2007 +0000
| 
|     introduce lib/matlab.h which encapsulates
|     the compatibilty define (as we already have
|     		for python)
|     
|     note that the plif & best_path_trans functions
|     spit out quite some warnings...breakage to be expected
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/lib/io.cpp
| A	src/lib/matlab.h
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit 4a5a70bce5c85cbbebe897c220e51de04e4725cf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 8 15:55:19 2007 +0000
| 
|     matlab 7.4 compile/compatibility fix
| 
| M	src/guilib/GUIMatlab.h
|  
* commit 3d4a599d711596f81c4e8f06953bae7de0faf814
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 8 15:08:40 2007 +0000
| 
|     include markov chain example and add missing features/kernels to
|     the python interface (though I really only wanted to interface
|     		the WDS kernel ...)
| 
| A	octave/examples/markov_chain.m
| M	src/Makefile
| M	src/base/SGObject.i
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/features/FKFeatures.i
| M	src/features/Features.i
| M	src/features/RealFileFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/features/TOPFeatures.h
| M	src/features/TOPFeatures.i
| M	src/features/WordFeatures.cpp
| M	src/kernel/CommWordKernel.i
| M	src/kernel/CustomKernel.i
| M	src/kernel/DiagKernel.i
| M	src/kernel/DistanceKernel.i
| M	src/kernel/FixedDegreeCharKernel.i
| M	src/kernel/GaussianKernel.i
| M	src/kernel/HistogramWordKernel.i
| M	src/kernel/Kernel.i
| M	src/kernel/LinearByteKernel.i
| M	src/kernel/LinearCharKernel.i
| M	src/kernel/LinearKernel.i
| M	src/kernel/LinearWordKernel.i
| M	src/kernel/LocalityImprovedCharKernel.i
| M	src/kernel/PolyKernel.i
| M	src/kernel/PolyMatchCharKernel.i
| M	src/kernel/PolyMatchWordKernel.i
| M	src/kernel/SalzbergWordKernel.i
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SimpleLocalityImprovedCharKernel.i
| M	src/kernel/SparseGaussianKernel.i
| M	src/kernel/SparseKernel.i
| M	src/kernel/SparseLinearKernel.i
| M	src/kernel/SparseNormSquaredKernel.i
| M	src/kernel/SparsePolyKernel.i
| M	src/kernel/WeightedDegreeCharKernelPolyA.i
| M	src/kernel/WordMatchKernel.i
| M	src/lib/io.i
|  
* commit e31b5a292fb5f5318b723dc7d54adf921e846907
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 7 22:04:36 2007 +0000
| 
|     remove debug output
| 
| M	src/kernel/GaussianKernel.cpp
|  
* commit 65fc203bb238cc641d79f0ff5aa328d12d038e10
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 7 18:19:02 2007 +0000
| 
|     * update to 0.3.2
|     * start wds kernel python interf.
| 
| M	python-modular/examples/wds_kernel.py
| M	src/ChangeLog
| M	src/TODO
| M	src/kernel/WeightedDegreePositionCharKernel.i
| M	src/kernel/WeightedDegreePositionStringKernel.i
|  
* commit 88e698e6e036dd51fd6e90ad66e1b6986485d725
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Mar 7 09:38:29 2007 +0000
| 
|     generalize for char values
| 
| M	python-modular/test_case_generator/generate_testcases.py
| M	python-modular/test_case_generator/m_print.py
|  
* commit a0ab2ae6fddcad88755ed2b12b0b035fd8ec76ff
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 6 15:26:12 2007 +0000
| 
|     merge changes back to trunk
| 
| M	matlab/examples/test_wdshift_kernel.m
| M	src/base/Version.h
| M	src/distributions/hmm/HMM.cpp
| M	src/gui/Octave.cpp
|  
* commit 54a857afa4036d50759c1c7bef58a6465071d5df
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 6 15:00:26 2007 +0000
| 
|     release shogun 0.3.2 fixing a number of bugs in the examples
|     and several valgrind hits in octave/hmm adding support for
|     numpy boolean -> for msplicer v0.2
| 
| M	src/NEWS
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIOctave.cpp
| M	src/structure/DynProg.i
|  
* commit ce375764eaf16eeb2ee1fbcec616241041999419
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Mar 5 08:32:31 2007 +0000
| 
|     fixed version string.
|     G
| 
| M	src/base/Version.h
|  
* commit 751712caed9923e36065c866a382548a63488521
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 4 21:05:02 2007 +0000
| 
|     * much more detailed error outputs when types/dims don't match
|     * workaround a numpy issue when long == int (long and int are different
|     		types inside of numpy, but both are 32bit on 32bit machines)
|     	if they are 32bit and same size then treat long as int
| 
| M	src/lib/python_typemaps.i
|  
* commit bc418e061e37fc6ddb0a6d79b70335048898b5ab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Mar 3 17:53:25 2007 +0000
| 
|     make obj->ref() / obj->unref() a macro
|     	SG_REF(obj)
|     	SG_UNREF(obj)
|     which is empty for the static interfaces
| 
| M	src/README.developer
| M	src/base/SGObject.h
| M	src/classifier/Classifier.cpp
| M	src/classifier/Classifier.h
| M	src/features/CombinedFeatures.h
| M	src/features/StringFeatures.h
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/KernelMachine.h
|  
* commit b94bcb02728a6c83771d91d29c8413ee10af6b32
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Mar 3 09:53:58 2007 +0000
| 
|     as we now unref() objects on destruction we have to
|     make sure no one else killed the object before we unref() it
|     this however may happen in all the static guis (matlab,...) so
|     all interfaces except the python-modular one are broken if commands
|     like clean_features/clean_kernels are called in wrong order
|     
|     this fixes just enough to make the test_wd_kernel script run
| 
| M	src/base/SGObject.h
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/KernelMachine.h
| M	src/kernel/WeightedDegreePositionCharKernel.i
|  
* commit 02964714b49d09f031410a16881c0b684a1e43eb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 2 19:44:20 2007 +0000
| 
|     this adds support for string featuers in python as follows:
|     
|     >>> from shogun.Features import *
|     >>> x=StringCharFeatures(Alphabet(DNA))
|     >>> x.set_string_features(['blafoo','hallo','dummdidumm'])
|     >>> x.select_feature_vector(1)
|     >>> x.get_str()
|     array(['h', 'a', 'l', 'l', 'o'],
|     			  dtype='|S1')
|     
|     there is a certain overhaul in the WD* kernels necessary -
|     as the shift kernel is not yet really supported (and we are losing
|     		control if we go on duplicating the code like this...)
| 
| M	matlab/examples/test_wd_kernel.m
| M	python-modular/examples/stringfeatures.py
| A	python-modular/examples/wds_kernel.py
| M	src/classifier/svm/SVM.cpp
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.i
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/lib/python_typemaps.i
|  
* commit f8ce89344ae54889d707556ae9cf68510f35e597
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Mar 2 11:13:01 2007 +0000
| 
|     cleaned up a bit. still works.
| 
| M	src/structure/DynProg.cpp
|  
* commit dfeff851f0452cd2a97b796e7a9e96517e19696a
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Mar 2 11:05:04 2007 +0000
| 
|     Mainly debug changes... cleanup soon.
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/structure/DynProg.cpp
|  
* commit f1157d3f2911f2109f8a9d24c3de5efe4bb1f3b7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 1 10:38:43 2007 +0000
| 
|     get rid of unused function definitions causing compile
|     problems
| 
| M	src/ChangeLog
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/lib/python_typemaps.i
|  
* commit 5adae808764ba0a1736721386a8420950c28fd03
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 1 09:34:27 2007 +0000
| 
|     add missing files and include WDS kernel in Kernel.i
| 
| M	src/kernel/Kernel.i
| M	src/kernel/WeightedDegreePositionCharKernel.i
| A	src/kernel/WeightedDegreePositionStringKernel.i
| A	src/lib/python.h
|  
* commit 8acdc70b61349c39dba472db126a36ca82a6d161
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 1 09:32:27 2007 +0000
| 
|     * this adds a obtain_by_sliding_window function to StringFeatures
|     * for that to work we need the WD kernel to work on string features
|     which is what WeightedDegreePositionStringKernel introduces. as this is
|     yet another code duplication we should get rid of (or creat a generic
|     		WD kernel object every WD kernel derives from).
|     * numpy.i is renamed to python_typemaps.i (as we need lists of
|     		strings to be mapped to string features - not exactly a numeric
|     		problem)
| 
| M	src/ChangeLog
| M	src/classifier/LinearClassifier.i
| M	src/classifier/SparseLinearClassifier.i
| M	src/classifier/svm/SVM.i
| M	src/distance/Distance.i
| M	src/features/Alphabet.i
| M	src/features/ByteFeatures.i
| M	src/features/CharFeatures.i
| M	src/features/Labels.i
| M	src/features/RealFeatures.i
| M	src/features/ShortFeatures.i
| M	src/features/SimpleFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/features/WordFeatures.i
| M	src/guilib/GUIPython.cpp
| M	src/kernel/Kernel.i
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| A	src/kernel/WeightedDegreePositionStringKernel.cpp
| A	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/io.cpp
| D	src/lib/numpy.i
| A	src/lib/python_typemaps.i
| M	src/regression/svr/SVR_light.cpp
| M	src/structure/Structure.i
|  
* commit 98c24755931d33f8d92c413a5e5de0e7be1c4adf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 27 23:43:07 2007 +0000
| 
|     replace $self -> self as this seems to be troublesome on
|     older swig versions
| 
| M	src/features/StringFeatures.i
|  
* commit 31baed4a1163d2c0aefba6eaf51bc6eca514d62e
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Feb 27 23:31:41 2007 +0000
| 
|     fixed another wrong free...
| 
| M	src/lib/Array.h
|  
* commit 3f7ece4989180611f8ab78cf550db85a4e3882fa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 27 23:26:47 2007 +0000
| 
|     workaround some broken swig oddities (which were working using
|     swig 1.3.2x): swig does not apply typemaps to templated classes
|     anymore... use %extend and define wrapper functions to call
|     the real functions...
| 
| M	python-modular/examples/stringfeatures.py
| M	src/ChangeLog
| M	src/features/Features.i
| M	src/features/ShortFeatures.h
| M	src/features/ShortFeatures.i
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/features/WordFeatures.h
| M	src/features/WordFeatures.i
|  
* commit b541b5d22899511d2194f840f647ef7a08c7c226
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Feb 27 22:00:44 2007 +0000
| 
| M	src/lib/numpy.i
| M	src/structure/DynProg.i
|  
* commit 47f513f4c2cc552e744a6e086dd506b46bf2c516
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 27 20:52:07 2007 +0000
| 
|     * this fixes the many pointer related warnings
|     * also fixes configure for atlas/lapack
| 
| M	src/ChangeLog
| M	src/base/SGObject.h
| M	src/configure
|  
* commit 747f9223f793c2761d2f8f6d1b223b00c9fd2a24
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 26 16:21:57 2007 +0000
| 
| A	python-modular/testcases/test_references.py
|  
* commit f1c0d934cd353f65b74928dbb267d9d3734ead7e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 26 09:47:26 2007 +0000
| 
|     * introduced reference counted objects for automagic swig object deallocation
|     * fixed a crasher bug in Array destructor
|     * updated developer readme
|     * added python signal handling: ctrl+c now raises a keyboard exception if not
|     in a big loop. in big loops it asks whether to immediately stop/prematurely stop
|     * fix crasher bugs (array out of bounds read/write) in translate_from_single_order
|     
|     using the reference counts from above we may now think of taking references
|     to numpy objects instead of copying them :-)
| 
| M	src/README.developer
| M	src/base/Parallel.cpp
| M	src/base/Parallel.h
| M	src/base/SGObject.h
| M	src/base/SGObject.i
| M	src/classifier/Classifier.cpp
| M	src/classifier/Classifier.h
| M	src/classifier/Classifier.i
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/svm/GNPPSVM.cpp
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/GPBTSVM.h
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/gnpplib.cpp
| M	src/distance/Distance.cpp
| M	src/distributions/Distribution.cpp
| M	src/features/Alphabet.cpp
| M	src/features/CombinedFeatures.h
| M	src/features/Features.cpp
| M	src/features/Labels.cpp
| M	src/features/SimpleFeatures.h
| M	src/features/StringFeatures.h
| M	src/gui/Matlab.cpp
| M	src/gui/Octave.cpp
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUILabels.cpp
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUISVM.cpp
| M	src/guilib/GUITime.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/KernelMachine.h
| M	src/lib/Array.h
| M	src/lib/Cache.h
| M	src/lib/Cplex.cpp
| M	src/lib/DynamicArray.h
| M	src/lib/File.cpp
| M	src/lib/Mathematics.cpp
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.cpp
| M	src/lib/Trie.cpp
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/preproc/PreProc.cpp
| M	src/structure/DynProg.cpp
|  
* commit e0097b56c03bc598de64a4e475277fd469f645ed
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Fri Feb 23 10:12:17 2007 +0000
| 
|     io.cpp: trivial whitespace cleanup
| 
| M	src/lib/io.cpp
|  
* commit b6a84e843079e5817e7e2c55dcd529b5bff743cb
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Thu Feb 22 18:18:10 2007 +0000
| 
|     add myself to authors
| 
| M	src/.authors
|  
* commit f1cb6757d5fa20ab25434889defd26b5f717cf72
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Thu Feb 22 18:17:43 2007 +0000
| 
|     further Array.h cleanups
|     
|     - remove unneccessary template
|     - simplify resize_array()
|     - reduce line width
|     - get rid of some duplicate SG_PRINT()s
|     - add myself to authors
| 
| M	src/lib/Array.h
|  
* commit 720ff7c1284bbfe945032276a2cc479d3bd5c053
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 22 17:45:35 2007 +0000
| 
|     * added jonas to authors
|     * added andre's array cleanup patches - now it is readable again!!
|     
|     	- The whole file was indented by one tab. Why?
|     	- This patch replaces the #ifdef ARRAY_STATISTICS mess we've had before
|     	by a set of macros which expand to nothing if ARRAY_STATISTICS is
|     	not defined.
| 
| M	src/.authors
| M	src/ChangeLog
| M	src/lib/Array.h
|  
* commit 57ab6be31e6d009fd08e7b31fb91b0eff3d4fbda
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 22 17:03:33 2007 +0000
| 
|     svn cp matlab testcases to octave
| 
| A	octave/testcases/run.sh
| A	octave/testcases/test_chi2_kernel.m
| A	octave/testcases/test_gaussian_kernel.m
| A	octave/testcases/test_kernels.m
| A	octave/testcases/test_linear_kernel.m
| A	octave/testcases/test_octave.m
| A	octave/testcases/test_poly_kernel.m
| A	octave/testcases/test_sigmoid_kernel.m
| A	octave/testcases/test_wdchar_kernel.m
|  
* commit 44eef9b2be70b935d3cff6a02492fe00e0db3592
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 22 16:39:49 2007 +0000
| 
|     +impl. bias in svmlin
| 
| M	python-modular/examples/svm_lin.py
| M	src/ChangeLog
| M	src/classifier/SparseLinearClassifier.cpp
| M	src/classifier/SparseLinearClassifier.h
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/ssl.cpp
| M	src/classifier/svm/ssl.h
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
|  
* commit 4344f6492fdbf0f0728a6813ddd7399ea997ac45
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Feb 22 16:21:31 2007 +0000
| 
|     fixed bug
| 
| M	matlab/testcases/test_kernels.m
| M	matlab/testcases/test_wdchar_kernel.m
|  
* commit 6be21f01384541995f1a87ddd45ae7fd40edaea8
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Feb 22 16:15:23 2007 +0000
| 
|     add wdcharkernel
| 
| M	matlab/testcases/test_kernels.m
| M	matlab/testcases/test_poly_kernel.m
| A	matlab/testcases/test_wdchar_kernel.m
|  
* commit bc35b8209b1a835893da37845e6f270e408ab42f
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Feb 22 15:17:52 2007 +0000
| 
|     add test for char kernels
| 
| D	python-modular/testcases/m_print.py
| M	python-modular/testcases/mfiles/Chi2Kernel_10.m
| M	python-modular/testcases/mfiles/GaussianKernel_10_13.m
| M	python-modular/testcases/mfiles/LinearKernel_False.m
| M	python-modular/testcases/mfiles/LinearKernel_True.m
| M	python-modular/testcases/mfiles/PolyKernel_False_10_False_3.m
| M	python-modular/testcases/mfiles/PolyKernel_False_10_True_3.m
| M	python-modular/testcases/mfiles/PolyKernel_True_10_False_3.m
| M	python-modular/testcases/mfiles/PolyKernel_True_10_True_3.m
| M	python-modular/testcases/mfiles/SigmoidKernel_05_10_07.m
| M	python-modular/testcases/mfiles/SigmoidKernel_11_10_13.m
| A	python-modular/testcases/mfiles/WeightedDegreeCharKernel_True_DNA_20_True_3.m
| A	python-modular/testcases/read_mfile.py
| A	python-modular/testcases/run.sh
| M	python-modular/testcases/test.py
| M	python-modular/testcases/test_kernels.py
| D	python-modular/testcases/test_python
|  
* commit f8eb3db29073a98de648aa1cea944fbe45ce5106
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 22 10:11:59 2007 +0000
| 
|     make SVMLin work in practice (works only w/o bias sofa)
| 
| M	src/classifier/SparseLinearClassifier.cpp
| M	src/classifier/SparseLinearClassifier.h
| M	src/classifier/SparseLinearClassifier.i
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMLin.h
| M	src/classifier/svm/ssl.cpp
| M	src/classifier/svm/ssl.h
|  
* commit 1b3bb6504ba3145bd4d3fa0905d68b1bd5dca25a
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Feb 22 09:46:07 2007 +0000
| 
|     add octave test script
| 
| A	matlab/testcases/run.sh
| A	matlab/testcases/test_octave.m
|  
* commit cf9d7e5a886d01a6e47b408b34678bcbdc011999
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Feb 22 09:44:55 2007 +0000
| 
|     add octave test script
| 
| M	matlab/testcases/test_kernels.m
| D	matlab/testcases/test_matlab.m
|  
* commit 1449cc58d35baf3c276311d48064034b623c4d0b
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Feb 22 09:37:06 2007 +0000
| 
|     * removed CharPolyKernel
|     * add make test
| 
| M	src/Makefile
| M	src/guilib/GUIKernel.cpp
|  
* commit 460c6e2940baa0c71b16f7d97d0dcfdcdf4055d3
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Feb 21 14:09:07 2007 +0000
| 
|     print before exec#ing test
| 
| M	python-modular/testcases/test_python
|  
* commit 4af263daa001b58dae4a9ba8224dfd09314c66e4
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Feb 21 13:49:13 2007 +0000
| 
|     move generator to python-modular
| 
| A	python-modular/test_case_generator/generate_testcases.py
| A	python-modular/test_case_generator/m_print.py
| D	python/test_case_generator/generate_testcases.py
| D	python/test_case_generator/m_print.py
|  
* commit 4a11d90614031ac0158b8da2517c92b1b4b13a3d
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Feb 21 13:47:45 2007 +0000
| 
|     move testcases to python-modular directory
| 
| A	python-modular/testcases/m_print.py
| A	python-modular/testcases/mfiles/Chi2Kernel_10.m
| A	python-modular/testcases/mfiles/GaussianKernel_10_13.m
| A	python-modular/testcases/mfiles/LinearKernel_False.m
| A	python-modular/testcases/mfiles/LinearKernel_True.m
| A	python-modular/testcases/mfiles/PolyKernel_False_10_False_3.m
| A	python-modular/testcases/mfiles/PolyKernel_False_10_True_3.m
| A	python-modular/testcases/mfiles/PolyKernel_True_10_False_3.m
| A	python-modular/testcases/mfiles/PolyKernel_True_10_True_3.m
| A	python-modular/testcases/mfiles/SigmoidKernel_05_10_07.m
| A	python-modular/testcases/mfiles/SigmoidKernel_11_10_13.m
| A	python-modular/testcases/test.py
| A	python-modular/testcases/test_kernels.py
| A	python-modular/testcases/test_python
| A	python/test_case_generator/m_print.py
| D	python/testcases/m_print.py
| D	python/testcases/mfiles/Chi2Kernel_10.m
| D	python/testcases/mfiles/GaussianKernel_10_13.m
| D	python/testcases/mfiles/LinearKernel_False.m
| D	python/testcases/mfiles/LinearKernel_True.m
| D	python/testcases/mfiles/PolyKernel_False_10_False_3.m
| D	python/testcases/mfiles/PolyKernel_False_10_True_3.m
| D	python/testcases/mfiles/PolyKernel_True_10_False_3.m
| D	python/testcases/mfiles/PolyKernel_True_10_True_3.m
| D	python/testcases/mfiles/SigmoidKernel_05_10_07.m
| D	python/testcases/mfiles/SigmoidKernel_11_10_13.m
| D	python/testcases/test.py
| D	python/testcases/test_kernels.py
| D	python/testcases/test_python
|  
* commit e6333dd4e28b2ca1ba2514aa1ad2df5a77c16c22
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Feb 21 13:45:11 2007 +0000
| 
|     removed unused CharPolyKernel
|     updated test scripts
| 
| M	python/test_case_generator/generate_testcases.py
| M	python/testcases/mfiles/Chi2Kernel_10.m
| M	python/testcases/mfiles/GaussianKernel_10_13.m
| M	python/testcases/mfiles/LinearKernel_False.m
| M	python/testcases/mfiles/LinearKernel_True.m
| M	python/testcases/mfiles/PolyKernel_False_10_False_3.m
| M	python/testcases/mfiles/PolyKernel_False_10_True_3.m
| M	python/testcases/mfiles/PolyKernel_True_10_False_3.m
| M	python/testcases/mfiles/PolyKernel_True_10_True_3.m
| M	python/testcases/mfiles/SigmoidKernel_05_10_07.m
| M	python/testcases/mfiles/SigmoidKernel_11_10_13.m
| D	src/kernel/CharPolyKernel.cpp
| D	src/kernel/CharPolyKernel.h
| D	src/kernel/CharPolyKernel.i
|  
* commit 14fca607317287dcd2d2721c4054312e71ff7dae
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Feb 21 12:58:01 2007 +0000
| 
| M	matlab/testcases/test_poly_kernel.m
|  
* commit 862b646c742a09b63ef104545a8f9647dfc33403
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Feb 21 12:53:46 2007 +0000
| 
|     Test module for matlab interface. Testscript: test_matlab.m
| 
| A	matlab/testcases/test_chi2_kernel.m
| A	matlab/testcases/test_gaussian_kernel.m
| A	matlab/testcases/test_kernels.m
| A	matlab/testcases/test_linear_kernel.m
| A	matlab/testcases/test_matlab.m
| A	matlab/testcases/test_poly_kernel.m
| A	matlab/testcases/test_sigmoid_kernel.m
|  
* commit adc91326be38333a3e95c829582de59f4a3d8bc7
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Feb 21 12:49:49 2007 +0000
| 
|     Testcase generator and test module for python swig interface. Testscript: test_python
| 
| A	python/test_case_generator/generate_testcases.py
| A	python/testcases/m_print.py
| A	python/testcases/mfiles/Chi2Kernel_10.m
| A	python/testcases/mfiles/GaussianKernel_10_13.m
| A	python/testcases/mfiles/LinearKernel_False.m
| A	python/testcases/mfiles/LinearKernel_True.m
| A	python/testcases/mfiles/PolyKernel_False_10_False_3.m
| A	python/testcases/mfiles/PolyKernel_False_10_True_3.m
| A	python/testcases/mfiles/PolyKernel_True_10_False_3.m
| A	python/testcases/mfiles/PolyKernel_True_10_True_3.m
| A	python/testcases/mfiles/SigmoidKernel_05_10_07.m
| A	python/testcases/mfiles/SigmoidKernel_11_10_13.m
| A	python/testcases/test.py
| A	python/testcases/test_kernels.py
| A	python/testcases/test_python
|  
* commit 8e8dfad3ff407b1ff6e59be0319deee38c70a331
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 21 10:54:15 2007 +0000
| 
|     * further cleanup patches from andre (Mathematics.h):
|     	- The code fails badly in case size==1.
|     	-Also, clean up the placement of spaces of that function according
|     	 to README.developers.
|     	 The code was broken for n<=0: For n==0 it would print only
|     	 "name=[", and it would segfault for n<0. Fix that up as well.
|     	 We're compiling with -O, so gcc will unroll the last iteration of
|     	 the loop, i.e. the new code should not be slower than the old code.
|     	- Kill four pointless loops and don't segfault for rows<=0 or cols<=0.
|     * remove broken KerthiPrimalSVM
|     * implement CSparseLinearClassifier
|     * derive CSVMLin from CSparseLinearClassifier
|     * add example on how to use SVMLin from python
|     * update AUTHORS, CONTRIBUTIONS
|     * make all the cache sizes in all the feature objects Constructors
|     	INT (as they are in MB anyway)
|     
|     Yes. We now have Sindhwani/Keerthis primal svm in shogun.
| 
| A	python-modular/examples/svm_lin.py
| M	src/CONTRIBUTIONS
| M	src/ChangeLog
| M	src/classifier/Classifier.i
| A	src/classifier/SparseLinearClassifier.cpp
| A	src/classifier/SparseLinearClassifier.h
| A	src/classifier/SparseLinearClassifier.i
| D	src/classifier/svm/KerthiPrimalSVM.cpp
| D	src/classifier/svm/KerthiPrimalSVM.h
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMLin.h
| M	src/classifier/svm/ssl.cpp
| M	src/classifier/svm/ssl.h
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.h
| M	src/features/FKFeatures.cpp
| M	src/features/FKFeatures.h
| M	src/features/Features.i
| M	src/features/RealFeatures.h
| M	src/features/RealFileFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/features/StringFeatures.i
| M	src/features/TOPFeatures.cpp
| M	src/features/TOPFeatures.h
| M	src/features/WordFeatures.h
| M	src/lib/Mathematics.h
|  
* commit f5438ed28cdbb2cf458334befcda732ec2abe17e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 20 17:19:25 2007 +0000
| 
|     3.1 merging
| 
| M	Makefile
| M	R/Makefile
| M	R/sg/DESCRIPTION
| M	src/configure
|  
* commit ce0639c056fcae420811962836e5a96add6a80d9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 20 16:54:51 2007 +0000
| 
|     releasing
| 
| M	src/ChangeLog
|  
* commit 555e91a208a19a9545774e688ac428585b16f8c1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 20 16:48:55 2007 +0000
| 
|     build fix on osx
| 
| M	src/base/Parallel.h
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMLin.h
|  
* commit 137f31df8d011da1b39817dd07246cb6c03f7a69
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 20 16:14:34 2007 +0000
| 
|     * number of processors autodetection for LINUX/DARWIN
|     removed that part from configure
| 
| M	src/ChangeLog
| M	src/base/Parallel.h
| M	src/configure
|  
* commit 92ef6f5f893793bb05b6e9ac509585eac31488cb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 20 15:49:14 2007 +0000
| 
|     bugfix release 0.3.1
| 
| M	src/NEWS
| M	src/configure
|  
* commit a511b837d4196ef2d184878a4ff9f216d5c5f536
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Tue Feb 20 10:36:46 2007 +0000
| 
| A	doc/pseudocode/poim.txt
|  
* commit 5f1c581cbc24bd74464e2c3981b26f8e055eaa10
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 20 00:47:34 2007 +0000
| 
|     define a binary search helper function as suggested by andre
| 
| M	src/ChangeLog
| M	src/lib/Mathematics.h
|  
* commit e7e42c2e850d58ffafdbacfcd5eedbf7710e0d0f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 20 00:21:58 2007 +0000
| 
|     (more of andre's cleanups)
|     
|     More or less a trivial cleanup that reduces lines of code quite a bit
|     while improving readability.
|     
|     The only nontrivial change is the skip of the register keyword for
|     the diff variable. Nowadays, register should not be used anymore as
|     it does more harm than good. We're using -O anyway.
| 
| M	src/lib/Mathematics.h
|  
* commit 0f664a9c9209f957b7c2b6799f5e45f0a6e595bd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 19 23:19:25 2007 +0000
| 
|     * fix configure check for sysconf _SC_NPROCESSORS_ONLN (should work now on macs)
|     * use cxx_check to test for powl()
|     * use random() in randperm()
| 
| M	src/base/Parallel.h
| M	src/configure
| M	src/lib/Mathematics.h
|  
* commit 4392084a3bf7013e665377ed56804c5e4252e210
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 19 09:46:11 2007 +0000
| 
|     * applied andre's cleanup patches
|     * some more SVMLin fixes
| 
| M	src/ChangeLog
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMLin.h
| M	src/lib/Mathematics.h
|  
* commit 6cf5fd37f18321a35d2d36d056e7c0f56a6a75d2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 18 07:52:35 2007 +0000
| 
|     rework configure to put -D$OS also into DEFINES
| 
| M	src/configure
| M	src/lib/io.h
|  
* commit 0d01e7d57ced76b328eac7cb515dd22eca14ec90
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 17 22:16:29 2007 +0000
| 
|     * update install instructions ( --enable-<interface> -> --interface=<interface> )
|     * select functions seems to require a non const dirent* on DARWIN
| 
| M	src/ChangeLog
| M	src/INSTALL
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/structure/DynProg.cpp
|  
* commit be353a37fa800804cf8e37c88432cf89a16bb4a2
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Feb 17 19:52:42 2007 +0000
| 
|     had to fix a few thinks to get it to compile on intel macs.
| 
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/structure/DynProg.cpp
|  
* commit b2e548bb9613cba9bad93906c2c4e337410d8c99
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 16 16:13:23 2007 +0000
| 
|     make con/destructor public
| 
| M	src/distributions/hmm/GHMM.h
|  
* commit 7a051499ed777f030db7fca3d62da63297e252b4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 15 17:17:23 2007 +0000
| 
|     minimize includes
| 
| M	python-modular/examples/wd_kernel.py
|  
* commit 84e2a716344004e162871e6e0ebdea1669143a77
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 14 19:09:30 2007 +0000
| 
|     merge 0.3.0 changes back to trunk
| 
| M	Makefile
| M	R/Makefile
| M	R/sg/DESCRIPTION
| M	R/sg/inst/doc/sg.Rnw
|  
* commit cf38a22c2c5ace53d98243d635fac7bf4a53fdaa
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Wed Feb 14 19:04:03 2007 +0000
| 
|     Don't count empty lines.
| 
| M	src/Makefile
|  
* commit 46d3598b9ea38a9dabccd14977f292c5ceebe8ce
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 14 17:15:43 2007 +0000
| 
|     * Release 0.3.0
|     * update developer README
| 
| M	src/README.developer
|  
* commit 4cfcc2aac1e4dbb25a2cf496ce3efd680202b025
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 14 17:11:52 2007 +0000
| 
|     this will be version 0.3.0, add io set_target_to_stderr/stdout functions
| 
| M	src/ChangeLog
| M	src/NEWS
| M	src/lib/io.cpp
| M	src/lib/io.h
|  
* commit 33a5fcc55a51af5e0522f707b2d05e50812cac77
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 14 11:14:51 2007 +0000
| 
|     NPP ->GNPP
| 
| M	matlab/examples/svm_classification.m
|  
* commit 39f1b4dd5aec1460e5df16467b971951164a985e
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Wed Feb 14 10:40:51 2007 +0000
| 
|     Copyright info updated, fixed stopping condition bug.
| 
| M	matlab/examples/svm_classification.m
| M	matlab/examples/test_gnpp_svm.m
| M	src/classifier/svm/GNPPSVM.cpp
| M	src/classifier/svm/GNPPSVM.h
| M	src/classifier/svm/gnpplib.cpp
| M	src/classifier/svm/gnpplib.h
|  
* commit 0886349171f4af4b3ecb2acd54d242e8260a7704
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 14 06:16:37 2007 +0000
| 
|     remove debug code, prepare for new release 0.3.1
| 
| M	src/ChangeLog
| M	src/NEWS
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 4bd92bf13a1090f6274ce3688c00206d34a9c9d8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 13 17:28:05 2007 +0000
| 
|     add vojtech to authors / finish relabeling to GNPP SVM
| 
| M	src/.authors
| M	src/ChangeLog
| M	src/guilib/GUISVM.cpp
|  
* commit e43f1ca7845ce762ffb6289c930d1c58baa55873
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 13 17:03:11 2007 +0000
| 
|     rename to gnpp
| 
| A	matlab/examples/test_gnpp_svm.m
| D	matlab/examples/test_npp_svm.m
|  
* commit 85e2c8c9c64e1cc5946784fafe39fedd6cc9c412
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 13 17:02:57 2007 +0000
| 
| A	matlab/examples/test_npp_svm.m
|  
* commit 9067e3601df866c799c69bbc06c6974116edf1d8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 13 16:57:23 2007 +0000
| 
|     + fixed some (?) npp svm bugs
| 
| M	src/ChangeLog
| M	src/classifier/svm/GNPPSVM.cpp
| M	src/classifier/svm/gnpplib.cpp
| M	src/kernel/Kernel.cpp
|  
* commit 03efdddf54138e1e030ba349d06141a31740391a
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Tue Feb 13 15:46:24 2007 +0000
| 
|     swig interface
| 
| A	src/classifier/svm/GNPPSVM.i
|  
* commit cad22a45f14d27cb72de71683f8b3fdf5921e36e
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Tue Feb 13 15:45:59 2007 +0000
| 
|     added GNPP (Generalized Nearest Point Problem) SVM
| 
| A	src/classifier/svm/GNPPSVM.cpp
| A	src/classifier/svm/GNPPSVM.h
| M	src/classifier/svm/SVM.i
| A	src/classifier/svm/gnpplib.cpp
| A	src/classifier/svm/gnpplib.h
| M	src/guilib/GUISVM.cpp
| M	src/lib/common.h
|  
* commit 6921ec6509ee25df7151c58967053c20af3385de
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 13 11:28:13 2007 +0000
| 
|     updated sections about macros
| 
| M	src/README.developer
|  
* commit f24eaf4cf80d6d0143a4658f3d0259e4a6f80a61
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 13 10:46:23 2007 +0000
| 
| M	src/README.developer
|  
* commit 08f387d7be98caeb62df0119494833d58eaf9ffc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 13 10:45:53 2007 +0000
| 
|     + update coding conventions (limit #ifdef usage)
| 
| M	src/README.developer
|  
* commit b12ac51d16976497eb5a203e60d59b11e5334f59
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 13 09:28:37 2007 +0000
| 
|     updated authors and coding conventions
| 
| M	src/.authors
| M	src/ChangeLog
| M	src/INSTALL
| M	src/README.developer
| M	src/classifier/svm/SVM.cpp
| M	src/features/CombinedFeatures.cpp
|  
* commit 3701bbc0bd218e59b41c91f4a121c44dab82467c
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 18:20:41 2007 +0000
| 
|     works.
|     cleanup.
| 
| M	src/structure/Plif.cpp
| M	src/structure/PlifArray.cpp
|  
* commit 2fe281aaef2a34355f804a39a30290d01f8a007d
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 17:37:42 2007 +0000
| 
| M	src/structure/Plif.cpp
|  
* commit 164f153402858c92715f92cfe3a528c7ed841433
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 17:33:21 2007 +0000
| 
| M	src/structure/Plif.cpp
|  
* commit dd1034928dc9ab5f5ecb7a4539864e569237f270
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 17:15:30 2007 +0000
| 
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit ef8076a3214f1be3de28a4b33e373625bd44d2ac
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 17:08:35 2007 +0000
| 
| M	src/structure/Plif.cpp
|  
* commit 6d45785c00ca3b6e77ea8fb865371e3dd2c16c71
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 16:50:53 2007 +0000
| 
|     more debug output...
|     
|     PS: need this many checkins since I'm comparing matlab and python to give same results and need two svn checkouts in sync.
| 
| M	src/structure/Plif.cpp
|  
* commit cdc9a2dfb3fe70627e6e644e89c46e4d619f75a3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 12 12:07:23 2007 +0000
| 
|     * add combined kernel / combined features to python interf.
| 
| M	src/ChangeLog
| M	src/features/CombinedFeatures.i
| M	src/features/Features.i
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CombinedKernel.i
| M	src/kernel/Kernel.i
|  
* commit d95a7ab3e1a89b27f20102250714a6c10e2da6c3
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 11:41:17 2007 +0000
| 
| M	src/structure/Plif.cpp
| M	src/structure/PlifArray.cpp
|  
* commit f62ac829e9802997142b0ee8073cb98a68b499ba
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 11:37:17 2007 +0000
| 
|     some more fixes...
| 
| M	src/structure/Plif.cpp
| M	src/structure/PlifArray.cpp
|  
* commit b32c7db97dfb14a4f480636c6df9553589bb9f1a
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 11:35:30 2007 +0000
| 
|     *** empty log message ***
| 
| M	src/structure/Plif.cpp
|  
* commit a069fa2abdf0f1b8131938bcae72ce307b2fbb26
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 11:20:08 2007 +0000
| 
|     more debug stuff ... (sorry for the spam).
| 
| M	src/structure/PlifArray.cpp
|  
* commit c9bc407a1b77b25a45714b5da4785fd46d95a7b5
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 11:10:22 2007 +0000
| 
|     *** empty log message ***
| 
| M	src/structure/PlifArray.cpp
|  
* commit f56f90a2b96658547bfaba61802c2d92f1b4854d
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 11:04:47 2007 +0000
| 
| M	src/structure/DynProg.cpp
|  
* commit ee4eca8f4572b458065b8aff8dd9e5e07e3d5057
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 12 10:05:25 2007 +0000
| 
|     * more examples cleanup
| 
| D	python-modular/examples/test_wdk.py
| A	python-modular/examples/wd_kernel.py
| D	python-modular/examples/wd_kernel2.py
| D	python-modular/examples/wd_kernel_debug.py
| A	python-modular/examples/wd_kernel_svm_linadd_batch.py
|  
* commit c9c0c94dae9d23fac2791c006025ae7458daec77
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 12 10:02:41 2007 +0000
| 
|     * put python-modular examples in separate directory
|     * fix get_hist()
| 
| A	python-modular/examples/krr.py
| A	python-modular/examples/lda.py
| A	python-modular/examples/multiple_svms.py
| A	python-modular/examples/multiple_svms_matplotlib.py
| A	python-modular/examples/numpy_commands.py
| A	python-modular/examples/numpy_krr_matplotlib.py
| A	python-modular/examples/numpy_krr_sinc.py
| A	python-modular/examples/numpy_lda_matplotlib.py
| A	python-modular/examples/numpy_svm.py
| A	python-modular/examples/numpy_svm_matplotlib.py
| A	python-modular/examples/numpy_svr_sinc.py
| A	python-modular/examples/rbf_kernel.py
| A	python-modular/examples/spec_kernel.py
| A	python-modular/examples/stringfeatures.py
| A	python-modular/examples/test_wdk.py
| A	python-modular/examples/wd_kernel2.py
| A	python-modular/examples/wd_kernel_debug.py
| A	python-modular/examples/wd_kernel_svm.py
| D	python/examples/krr.py
| D	python/examples/lda.py
| D	python/examples/multiple_svms.py
| D	python/examples/multiple_svms_matplotlib.py
| D	python/examples/numpy_commands.py
| D	python/examples/numpy_krr_matplotlib.py
| D	python/examples/numpy_krr_sinc.py
| D	python/examples/numpy_lda_matplotlib.py
| D	python/examples/numpy_svm.py
| D	python/examples/numpy_svm_matplotlib.py
| D	python/examples/numpy_svr_sinc.py
| D	python/examples/rbf_kernel.py
| D	python/examples/spec_kernel.py
| D	python/examples/stringfeatures.py
| M	python/examples/test_mkl.py
| D	python/examples/test_wdk.py
| D	python/examples/testsuite.py
| D	python/examples/ut.py
| D	python/examples/wd_kernel.py
| D	python/examples/wd_kernel2.py
| D	python/examples/wd_kernel_debug.py
| M	src/features/Alphabet.i
|  
* commit e0980f2639c4c6e8d4ec55a4631d18fff188212b
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Feb 11 18:58:58 2007 +0000
| 
|     minor debug changes.
|     G
| 
| M	src/structure/DynProg.cpp
|  
* commit 6dd7d26d4aef9e06d7a884ad2d01aa81406a66b9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 11 17:58:37 2007 +0000
| 
|     * add a configure test for powl(), as the ifdef construct in
|     lib/Mathmatics.h was flawed (damn!). now HAVE_POWL is set if
|     powl() exists
| 
| M	src/ChangeLog
| M	src/configure
| M	src/lib/Mathematics.h
|  
* commit 5482323d6b7f15bfcc05f66d33ece5d535d9c069
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 11 16:43:34 2007 +0000
| 
|     * add powl function again (actually only the ifdef needed removal)
| 
| M	src/lib/Mathematics.h
|  
* commit ec2cb2f7ebaf7935bf5566efd583e8922b9f982b
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Feb 11 14:55:31 2007 +0000
| 
|     finally... the pow problem is gone.
|     G
| 
| M	src/lib/Mathematics.h
| M	src/structure/DynProg.cpp
|  
* commit dc2e11d6ff77b04def3e6c3956bfd5fb21201c5b
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Feb 11 14:50:04 2007 +0000
| 
|     more problems with the pow function
| 
| M	src/lib/Mathematics.h
|  
* commit 96a5760c9c0a265cc76e1c87d0d93be264d51a81
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Feb 11 14:47:03 2007 +0000
| 
|     *** empty log message ***
| 
| M	src/lib/Mathematics.h
|  
* commit ddb05fa98f114a605e59af0dc20c2349f5a1bcbd
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Feb 11 14:27:15 2007 +0000
| 
|     somebody did not complete code here ...
|     G
| 
| M	src/lib/Mathematics.h
|  
* commit b6f55a479d088a499729f8509cb7d9ce875cff8a
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Sat Feb 10 20:06:29 2007 +0000
| 
|     added support for similarity coefficients (which boils down to some strange normalization of the histogram intersection kernel. this is unpublished, btw.)
| 
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
|  
* commit a0a04badc0134638ec3d0aaee78c18ef748270b0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 10 06:34:59 2007 +0000
| 
|     + fall back to double precision pow if powl is not available
| 
| M	src/ChangeLog
| M	src/lib/Mathematics.h
|  
* commit 75c09ef7b2e28fa2d0f1d1afba81ac027124952a
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Fri Feb 9 17:22:29 2007 +0000
| 
|     improved mindy features and kernel
|     cur_time fix in time class
|     support for max_train_time in svm light
| 
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUISVM.cpp
| M	src/guilib/GUISVM.h
| M	src/kernel/MindyGramKernel.cpp
| M	src/lib/Time.h
|  
* commit ba46de2b47dc49b4966c82564ef88561da995704
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Fri Feb 9 11:56:48 2007 +0000
| 
|     fixed incorrect matlab interface to changed Mindy functions
| 
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIKernel.cpp
|  
* commit adc69fcbaa12d0901ac544d28ad8b9bcd184ef60
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 9 11:32:22 2007 +0000
| 
|     * make empty files (strings) a fatal error
| 
| M	src/features/StringFeatures.h
|  
* commit 55bb809ba24847e6cda3438a3e6c9110deaf6e6b
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Fri Feb 9 10:34:02 2007 +0000
| 
|     removed annoying goto statement
| 
| M	src/kernel/MindyGramKernel.cpp
|  
* commit 4be39b77fbef0e59d129f85aaf6d99c1aa5fb208
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Fri Feb 9 10:32:31 2007 +0000
| 
|     more mindy changes
| 
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
|  
* commit ad98c89cb3c99ac5015c3443cc88e3ab0dae9043
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 9 10:29:31 2007 +0000
| 
|     fix for spectrum kernel (yet another init problem)
| 
| M	src/ChangeLog
| M	src/features/MindyGramFeatures.i
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/MindyGramKernel.i
|  
* commit 4d72140a075b08531f2d4893a8a7ecb0e8ac7c19
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 8 19:59:06 2007 +0000
| 
|     * add typemapped get_hist() function
| 
| M	src/ChangeLog
| M	src/features/Alphabet.h
| M	src/features/Alphabet.i
|  
* commit 85ef7ee88b11c849a64f0601bac96f7e3e669dd4
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Thu Feb 8 15:27:54 2007 +0000
| 
|     untested patches for matlab gui
| 
| M	src/guilib/GUIFeatures.h
|  
* commit 8c657f18d894ff6ac3d9a8ecb2cfe4e7a8a50607
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Thu Feb 8 15:23:23 2007 +0000
| 
|     fixed bugs in mindy and improved swig support
| 
| M	src/configure
| M	src/features/Features.i
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/features/MindyGramFeatures.i
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/Kernel.i
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
| M	src/kernel/MindyGramKernel.i
|  
* commit e88908000efd79c778b2ed2c8059c2572ce7e3b8
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Wed Feb 7 18:49:58 2007 +0000
| 
|     * don't use grep to count lines
| 
| M	src/Makefile
|  
* commit 11b32f0f7ef83aa85aa181055b8042919a66e783
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Mon Feb 5 13:00:12 2007 +0000
| 
|     NULL may not be defined.
| 
| M	src/configure
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
|  
* commit 6eb0b185284b3267372d79737774c7ce29a55763
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Feb 1 14:12:37 2007 +0000
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
|  
* commit 5f2593c6ee00abadc782dc784af6e7f1567101d1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 1 13:39:15 2007 +0000
| 
|     * updated make linecount ... hmmhh 83556 lines
| 
| M	src/Makefile
| M	src/TODO
| M	src/configure
|  
* commit 0206c7ed1b8e241d22efe264b598dd7d6c70ef8e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 31 09:56:30 2007 +0000
| 
|     * rename  best_path_set_seq to best_path_set_seq3d
|     
|     GU -> please NOTE!
| 
| M	src/ChangeLog
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 741931ecc9b8f7721ee250dfe404cdf694e49cca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 31 08:02:24 2007 +0000
| 
|     * the forgotten file...
| 
| A	src/lib/ShogunException.i
|  
* commit 786b92000323d024a4fdf1ec2c57dfe7c94b6349
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 31 07:58:18 2007 +0000
| 
|     * also call base constructors here
| 
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVM_oneclass.cpp
| M	src/classifier/svm/MPD.cpp
| M	src/regression/KRR.cpp
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/SVR_light.cpp
|  
* commit 649b214bdd2b1290355db4c8dbcca39c314a1187
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 31 07:45:09 2007 +0000
| 
|     * updated wd examples
|     * fix init for wd kernel
|     * call KernelMachine Constructor in SVM constructor
| 
| M	python/examples/test_wdk.py
| M	python/examples/wd_kernel.py
| M	python/examples/wd_kernel2.py
| M	python/examples/wd_kernel_debug.py
| M	src/ChangeLog
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM.i
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.i
|  
* commit 3421b96af552d6a2b890a507ee74b690ee881980
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 29 14:33:50 2007 +0000
| 
|     * swig exception handling
|     * LDA examples
|     * updated krr/svm examples
| 
| A	python/examples/lda.py
| M	python/examples/numpy_krr_matplotlib.py
| A	python/examples/numpy_lda_matplotlib.py
| M	python/examples/numpy_svm_matplotlib.py
| M	src/.generate_link_dependencies.py
| M	src/ChangeLog
| M	src/classifier/Classifier.i
| M	src/distance/Distance.i
| M	src/distributions/Distribution.i
| M	src/features/Features.i
| M	src/kernel/Kernel.i
| M	src/lib/Library.i
| M	src/lib/ShogunException.cpp
| M	src/lib/ShogunException.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/io.i
| M	src/preproc/PreProc.i
| M	src/regression/Regression.i
| M	src/structure/Structure.i
|  
* commit 0bbd78640359b6130b02ce2a10a74d52a7d62a0e
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Mon Jan 29 14:20:05 2007 +0000
| 
|     added DistanceKernel creation to create_kernel method
| 
| M	src/guilib/GUIKernel.cpp
|  
* commit e0c4f9161f2b462b691a1b11aefd9bcc27f80cfc
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Mon Jan 29 14:03:36 2007 +0000
| 
|     added CanberraWordDistance
| 
| M	src/guilib/GUIDistance.cpp
|  
* commit b1589dadc668e141246bf37495ef894233c84e5e
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Mon Jan 29 13:39:44 2007 +0000
| 
|     change init (init call for CKernel) and delete (Distance=NULL)
| 
| M	src/kernel/DistanceKernel.cpp
|  
* commit 7ac392e98f0d540545479cab36c201218c3d2e70
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 29 09:31:21 2007 +0000
| 
|     * finally a working pinv and LDA :-)
|     * overload classify() for linear / kernel methods
|     * compile fixes for suffixarray/Spec kernel
|     * trying to get exceptions working
| 
| M	src/ChangeLog
| M	src/Makefile
| M	src/classifier/Classifier.h
| M	src/classifier/LDA.cpp
| M	src/classifier/LDA.h
| M	src/classifier/LinearClassifier.cpp
| M	src/classifier/LinearClassifier.h
| M	src/configure
| M	src/features/StringFeatures.i
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/KernelMachine.h
| M	src/kernel/SpectrumKernel.cpp
| M	src/lib/Array2.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/io.i
| M	src/lib/lapack.cpp
| M	src/lib/lapack.h
| M	src/lib/suffixarray/ESA.cpp
| M	src/lib/suffixarray/ESA.h
| M	src/lib/suffixarray/ErrorCode.h
|  
* commit cdcf196db1bf8172d0725087d749b806cec0b823
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Jan 28 17:50:20 2007 +0000
| 
|     changed dimensionality of seq_matrix in best_path_trans.
|     It is three dimensional now and the third dimension has to match with the second dimension of state_signals.
|     untestet
|     
|     @Soeren, when you use it, just drop the second column of state_signals (with all zeros in it).
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 2749893f1be5f6a3631e5566b9d87ee5feea88be
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 26 15:34:59 2007 +0000
| 
|     * quieten status printouts for modular python interface
| 
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
|  
* commit 2b494fa26f5802d79bd6ee3ead9370291e8232f8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 26 13:58:58 2007 +0000
| 
|     compile fix for distance stuff
| 
| M	src/ChangeLog
| M	src/distance/RealDistance.h
| M	src/distance/StringDistance.h
|  
* commit 5f73bb09d7513bb6c5f92bed3998c48c77603f0b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 26 13:55:04 2007 +0000
| 
|     * move CMath math declaration into base/SGObject.cpp
|     * move version printout into CMath ...
| 
| M	src/ChangeLog
| M	src/base/SGObject.cpp
| M	src/distance/CanberraWordDistance.cpp
| M	src/gui/TextGUI.cpp
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
|  
* commit fda7d43a65662b2f15bfe24bb8438ca245d16c9e
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Thu Jan 25 14:49:24 2007 +0000
| 
|     change some lines; add new distance interfaces
| 
| M	src/distance/Distance.i
| M	src/distance/SimpleDistance.i
|  
* commit 457ba421e530fa793801f24ef82d0b7f7f699fe6
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Thu Jan 25 14:48:28 2007 +0000
| 
|     swig interface files
| 
| A	src/distance/CanberraWordDistance.i
| A	src/distance/HammingWordDistance.i
| A	src/distance/ManhattanWordDistance.i
|  
* commit a9e3ae51d2d1269d5235347b05e316e637cc4203
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Thu Jan 25 14:27:58 2007 +0000
| 
|     swig interface: DistanceKernel
| 
| A	src/kernel/DistanceKernel.i
|  
* commit ee33b95baee9bce6f69857851b1888b7a311d8cd
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Thu Jan 25 14:25:06 2007 +0000
| 
|     new kernel; uses distance objects
| 
| A	src/kernel/DistanceKernel.cpp
| A	src/kernel/DistanceKernel.h
|  
* commit 8f59cc994b38937d2b60ead7c74c770986a041d4
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Thu Jan 25 14:20:37 2007 +0000
| 
|     distance adjustment
|      Diese und die folgenden Zeilen werden ignoriert --
|     
|     M    GUIDistance.cpp
| 
| M	src/guilib/GUIDistance.cpp
|  
* commit 31c412982908032238ac19f81e32839fe4f9511d
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Thu Jan 25 14:18:35 2007 +0000
| 
|     renewed
| 
| M	src/distance/StringDistance.h
|  
* commit 03f6c64ba75c7fcdaa3ab5cd929982e508b78882
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Thu Jan 25 14:17:52 2007 +0000
| 
|     new distances
| 
| A	src/distance/CanberraWordDistance.cpp
| A	src/distance/CanberraWordDistance.h
| A	src/distance/HammingWordDistance.cpp
| A	src/distance/HammingWordDistance.h
| A	src/distance/ManhattanWordDistance.cpp
| A	src/distance/ManhattanWordDistance.h
|  
* commit 2700cb263eb4d2e5007a57c4657757c2ac7c5d0c
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Thu Jan 25 14:15:40 2007 +0000
| 
|      renewed distance
| 
| M	src/distance/Canberra.cpp
| M	src/distance/Canberra.h
| M	src/distance/Chebyshew.cpp
| M	src/distance/Chebyshew.h
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/distance/Geodesic.cpp
| M	src/distance/Geodesic.h
| M	src/distance/Jensen.cpp
| M	src/distance/Jensen.h
| M	src/distance/Manhattan.cpp
| M	src/distance/Manhattan.h
| M	src/distance/Minkowski.cpp
| M	src/distance/Minkowski.h
| M	src/distance/SimpleDistance.h
|  
* commit f1342d6ee451ddef8e5c28d95aad59b93128ecbd
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Thu Jan 25 13:57:28 2007 +0000
| 
|     added K_DISTANCE and D_CANBERRA
| 
| M	src/lib/common.h
|  
* commit 5c057d65178b9a5b96c86c3d38feab7bc359e7b4
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Jan 25 13:41:12 2007 +0000
| 
|     + added 'const' in overloaded operator=
| 
| M	src/lib/Array.h
| M	src/lib/Array3.h
|  
* commit 78a5cc5cc1cf8fd2ef82f8115e63a144710fda21
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 25 12:48:12 2007 +0000
| 
|     * quieten svn2cl error (if svn2cl does not exist)
| 
| M	src/Makefile
|  
* commit a3d5e9fe8e63e0ae54afe7bf40566d8b1871b3f3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 25 11:37:35 2007 +0000
| 
|     * remove some debug output
|     * array display functions use name now
| 
| M	src/ChangeLog
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/structure/DynProg.cpp
|  
* commit 10132c685ae920a703860db07a3042d4c7f81efb
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Jan 24 18:45:11 2007 +0000
| 
|     preparation for changes ... should work as before...
|     G
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 31dd5d249c1bb5ee5bb2ab689d5e9ac791810c09
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 24 11:00:18 2007 +0000
| 
|     -updates for the debian package
|     	* compile fix for don't use svmlight
|     	* updated project URL
| 
| M	Makefile
| M	R/Makefile
| M	R/Makefile.sed
| M	src/README
| M	src/regression/Regression.i
|  
* commit 30d1362194311fa03717f3f59e5b8c4923614218
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 23 16:40:31 2007 +0000
| 
|     + add c.gehl to authors
|     + create a global cio variable for static interfaces that points
|      to the static io variable in CSGObject to get a global loglevel option;
|      for modular interfaces this is tweakably per class (except for static
|     		 functions/ C-files where a global sg_io variable is used)
| 
| M	src/.authors
| M	src/ChangeLog
| M	src/base/SGObject.cpp
| M	src/base/SGObject.h
| M	src/gui/GUI.cpp
| M	src/gui/Matlab.cpp
| M	src/gui/Octave.cpp
| M	src/gui/R.cpp
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/structure/DynProg.cpp
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit 2fe8a32681fa8d3647b08b5a7d6c3d4599885db0
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Tue Jan 23 15:15:47 2007 +0000
| 
|     new distance types
| 
| M	src/lib/common.h
|  
* commit 312ad04fabdcf312136e0ce3536ffe71713587e3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 23 12:18:17 2007 +0000
| 
|     +get_loglevel()
| 
| M	src/ChangeLog
| M	src/base/Version.cpp
| M	src/base/Version.h
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/preproc/SortUlongString.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/DynProg.i
|  
* commit 5b2f875486b82e4e822a19b5829105cf318bfd7f
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Jan 22 14:13:34 2007 +0000
| 
|     scores & losses should be return arguments...
|     
|     G
| 
| M	src/structure/DynProg.h
|  
* commit fb05a0bd7b046df865112e616389135b5c8d7cbe
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 22 13:51:33 2007 +0000
| 
|     - don't regroup changelog
| 
| M	src/ChangeLog
| M	src/Makefile
|  
* commit 87fbfab2ba1e69b733642f3e7fb34bf7a3f8fa51
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 22 10:05:39 2007 +0000
| 
|     + matlab build fix
| 
| M	src/guilib/GUIMatlab.cpp
|  
* commit 05918ece834c080974225525721d0cbb48effaf3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 22 09:50:01 2007 +0000
| 
|     - forgotten wd kernel example
| 
| A	python/examples/wd_kernel_debug.py
|  
* commit e02afe1e1b85baf40b82c3ccd588d422f9076467
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 22 09:46:02 2007 +0000
| 
|     + updated python examples
| 
| M	python/examples/krr.py
| M	python/examples/multiple_svms_matplotlib.py
| M	python/examples/numpy_krr_matplotlib.py
| M	python/examples/numpy_krr_sinc.py
| M	python/examples/numpy_svm.py
| M	python/examples/numpy_svm_matplotlib.py
| A	python/examples/numpy_svr_sinc.py
| M	python/examples/rbf_kernel.py
| M	python/examples/wd_kernel.py
|  
* commit eb24cab2fe465cb2d387b0392cd73d70c43c71ce
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 22 09:45:19 2007 +0000
| 
|     - configure now uses ./configure --interface=INTERFACE
|     	where INTERFACE is one of cmdline, python-modular, python, R,
|     	R-modular octave or matlab
|     - moved Kernel Ridge Regression into regression/
|     - python swig interface now has a fully wrapped Regression, Preprocessor and Distribution module
|     - version class functions are now static
|     - HMM now uses #parallel threads as specified by CParallel
|     - enabled typed autodoc for all modules
|     - update copyright -> 2007
|     - updated swig python examples (new: svr regression, updated: krr regression/svm examples)
| 
| M	src/Makefile
| A	src/base/SGObject.cpp
| M	src/base/SGObject.h
| M	src/base/SGObject.i
| M	src/base/Version.cpp
| M	src/base/Version.h
| M	src/classifier/Classifier.i
| D	src/classifier/KRR.cpp
| D	src/classifier/KRR.h
| D	src/classifier/KRR.i
| M	src/classifier/KernelPerceptron.i
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/configure
| A	src/distance/Canberra.i
| A	src/distance/Chebyshew.i
| M	src/distance/Distance.cpp
| M	src/distance/Distance.i
| M	src/distance/DistanceMachine.i
| A	src/distance/Geodesic.i
| A	src/distance/Jensen.i
| A	src/distance/Manhattan.i
| A	src/distance/Minkowski.i
| A	src/distance/RealDistance.i
| A	src/distance/SimpleDistance.i
| A	src/distance/StringDistance.i
| M	src/distributions/Distribution.i
| A	src/distributions/histogram/Histogram.i
| M	src/distributions/hmm/GHMM.cpp
| M	src/distributions/hmm/GHMM.h
| A	src/distributions/hmm/GHMM.i
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/HMM.i
| M	src/distributions/hmm/LinearHMM.h
| A	src/distributions/hmm/LinearHMM.i
| M	src/features/Features.i
| M	src/features/SparseFeatures.h
| M	src/gui/GUI.cpp
| M	src/gui/Python.cpp
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIR.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.i
| M	src/kernel/KernelMachine.h
| M	src/kernel/KernelMachine.i
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/lib/Library.i
| A	src/preproc/LogPlusOne.i
| A	src/preproc/NormDerivativeLem3.i
| A	src/preproc/NormOne.i
| M	src/preproc/PCACut.cpp
| A	src/preproc/PCACut.i
| M	src/preproc/PreProc.i
| A	src/preproc/PruneVarSubMean.i
| A	src/preproc/RealPreProc.i
| A	src/preproc/ShortPreProc.i
| A	src/preproc/SimplePreProc.i
| A	src/preproc/SortWord.i
| A	src/preproc/SortWordString.i
| A	src/preproc/SparsePreProc.i
| M	src/preproc/StringPreProc.i
| A	src/preproc/WordPreProc.i
| A	src/regression/KRR.cpp
| A	src/regression/KRR.h
| A	src/regression/KRR.i
| A	src/regression/Regression.i
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/LibSVR.h
| A	src/regression/svr/LibSVR.i
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
| A	src/regression/svr/SVR_light.i
| M	src/structure/DynProg.cpp
| M	src/structure/Structure.i
|  
* commit 4aa296dbd61102a81e36badaae331f70e89980cd
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Jan 21 22:04:13 2007 +0000
| 
| M	src/structure/DynProg.cpp
|  
* commit b61b97760bff93e33813607d391c040ec3e10254
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Jan 21 21:50:35 2007 +0000
| 
|     first version ... for what's needed to go on with mSplicer.
|     
|     G
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit a9eadbb4edeea0412f050422f68f73271fa1da4d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 20 18:22:29 2007 +0000
| 
|     - matlab build fix
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/Plif.cpp
|  
* commit 9b6dd6d04275db340c18d70733ddc8d07bd74458
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 20 17:44:53 2007 +0000
| 
|     - updated coding conventions
|     - new io functions SG_DEBUG, SG_ERROR etc - use only those!
|     	this will through exceptions in python
|     - kernel init function takes only lhs + rhs
|     - all objects now derive from CSGObject
| 
| M	Makefile
| M	src/ChangeLog
| M	src/README.developer
| M	src/base/SGObject.h
| M	src/base/Version.cpp
| M	src/classifier/Classifier.h
| M	src/classifier/KNN.cpp
| M	src/classifier/KNN.h
| M	src/classifier/LDA.cpp
| M	src/classifier/Perceptron.cpp
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/svm/CPLEXSVM.cpp
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVM_oneclass.cpp
| M	src/classifier/svm/MPD.cpp
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpdtsolve.h
| M	src/classifier/svm/pr_loqo.cpp
| M	src/classifier/svm/ssl.cpp
| M	src/distance/Distance.cpp
| M	src/distance/SimpleDistance.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| D	src/exceptions/AlphabetException.cpp
| D	src/exceptions/AlphabetException.h
| D	src/exceptions/ClassifierException.cpp
| D	src/exceptions/ClassifierException.h
| D	src/exceptions/Exception.h
| D	src/exceptions/FeatureException.cpp
| D	src/exceptions/FeatureException.h
| D	src/exceptions/KernelException.cpp
| D	src/exceptions/KernelException.h
| D	src/exceptions/LabelException.cpp
| D	src/exceptions/LabelException.h
| D	src/exceptions/PluginException.cpp
| D	src/exceptions/PluginException.h
| D	src/exceptions/SVMException.cpp
| D	src/exceptions/SVMException.h
| D	src/exceptions/ShogunException.cpp
| D	src/exceptions/ShogunException.h
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.cpp
| M	src/features/CharFeatures.cpp
| M	src/features/CombinedFeatures.cpp
| M	src/features/FKFeatures.cpp
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/features/RealFeatures.cpp
| M	src/features/RealFileFeatures.cpp
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.cpp
| M	src/features/WordFeatures.cpp
| M	src/gui/GUI.cpp
| M	src/gui/GUI.h
| M	src/gui/Matlab.cpp
| M	src/gui/Octave.cpp
| M	src/gui/Python.cpp
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIDistance.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKNN.cpp
| M	src/guilib/GUIKNN.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUILabels.cpp
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIOctave.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIPython.h
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
| M	src/guilib/GUISVM.cpp
| M	src/guilib/GUISVM.h
| M	src/guilib/GUITime.h
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/AUCKernel.h
| M	src/kernel/CanberraWordKernel.cpp
| M	src/kernel/CanberraWordKernel.h
| M	src/kernel/CharPolyKernel.cpp
| M	src/kernel/CharPolyKernel.h
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordKernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.cpp
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/FixedDegreeCharKernel.cpp
| M	src/kernel/FixedDegreeCharKernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/HammingWordKernel.cpp
| M	src/kernel/HammingWordKernel.h
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/HistogramWordKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearCharKernel.cpp
| M	src/kernel/LinearCharKernel.h
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalityImprovedCharKernel.cpp
| M	src/kernel/LocalityImprovedCharKernel.h
| M	src/kernel/ManhattenWordKernel.cpp
| M	src/kernel/ManhattenWordKernel.h
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchCharKernel.cpp
| M	src/kernel/PolyMatchCharKernel.h
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/PolyMatchWordKernel.h
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.h
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleLocalityImprovedCharKernel.cpp
| M	src/kernel/SimpleLocalityImprovedCharKernel.h
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparseNormSquaredKernel.cpp
| M	src/kernel/SparseNormSquaredKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreeCharKernelPolyA.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WeightedDegreePositionPhylCharKernel.cpp
| M	src/kernel/WordMatchKernel.cpp
| M	src/kernel/WordMatchKernel.h
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/lib/Cache.h
| M	src/lib/Cplex.cpp
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| A	src/lib/ShogunException.cpp
| A	src/lib/ShogunException.h
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.cpp
| M	src/lib/Time.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
| M	src/lib/common.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/numpy.i
| M	src/preproc/PCACut.cpp
| M	src/preproc/PreProc.cpp
| M	src/preproc/PreProc.h
| M	src/preproc/PruneVarSubMean.cpp
| M	src/preproc/SortUlongString.cpp
| M	src/preproc/SortUlongString.h
| M	src/preproc/SortWordString.cpp
| M	src/preproc/SortWordString.h
| M	src/preproc/StringPreProc.h
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/SVR_light.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
| M	src/structure/PlifArray.cpp
|  
* commit 5b5a34357b41d142ecffab3d30ca56edb2abdabb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 19 17:05:18 2007 +0000
| 
|     +best_path*deriv setup functions
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/DynProg.i
|  
* commit 20b96faddae1936cefce5653f5f74bcf00d5f218
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 19 15:59:21 2007 +0000
| 
|     + rbf kernel example
|     + preproc + sortulong fix
| 
| A	python/examples/rbf_kernel.py
| M	src/preproc/PreProc.i
| M	src/preproc/SortUlongString.i
|  
* commit 63ee6e88b7c6f812765d7ac1538c595cfaafbc59
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 19 13:55:01 2007 +0000
| 
|     +added SGObject to object hierarchy
|     +fixed forward declaration of StringFeatures
| 
| M	src/ChangeLog
| M	src/classifier/Classifier.i
| M	src/distance/Distance.i
| M	src/distributions/hmm/HMM.i
| M	src/features/Features.i
| M	src/features/StringFeatures.h
| M	src/kernel/Kernel.i
| M	src/lib/Library.i
| M	src/preproc/PreProc.i
| M	src/structure/Structure.i
|  
* commit 6b37a456ff7d00f18fbe1329a263b416339f2aa9
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jan 19 13:41:00 2007 +0000
| 
|     + added first preprocessing interfaces
| 
| M	src/kernel/Kernel.i
| A	src/preproc/PreProc.i
| A	src/preproc/SortUlongString.i
| A	src/preproc/StringPreProc.i
|  
* commit 6c044f4fe40765413780bfadcad3a041f6da06a7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 19 11:53:31 2007 +0000
| 
|     automagic ChangeLog generation using svn2cl
|     (debian package subversion-tools)
| 
| A	src/.authors
| M	src/ChangeLog
| M	src/Makefile
| A	src/NEWS
|  
* commit c80dc3ddb4324545d9c4e7872575d955537244f3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 19 10:44:06 2007 +0000
| 
|     -move the `base' objects (Parallel/SGObject/Version) into base/
|     -except for the GUI and io everything should be (directly or indirectly)
|     	derived from SGObject
| 
| A	src/base/Parallel.cpp
| A	src/base/Parallel.h
| A	src/base/Parallel.i
| A	src/base/SGObject.h
| A	src/base/SGObject.i
| A	src/base/Version.cpp
| A	src/base/Version.h
| A	src/base/Version.i
| M	src/classifier/Classifier.h
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/distributions/Distribution.h
| M	src/distributions/hmm/HMM.cpp
| M	src/features/Features.h
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIR.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionPhylCharKernel.cpp
| M	src/lib/Array.h
| M	src/lib/Cache.h
| M	src/lib/Cplex.h
| M	src/lib/DynamicArray.h
| M	src/lib/File.h
| M	src/lib/Library.i
| M	src/lib/Mathematics.h
| D	src/lib/Parallel.cpp
| D	src/lib/Parallel.h
| D	src/lib/Parallel.i
| D	src/lib/SGObject.h
| D	src/lib/SGObject.i
| M	src/lib/Signal.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.h
| M	src/lib/Trie.h
| D	src/lib/Version.cpp
| D	src/lib/Version.h
| D	src/lib/Version.i
| M	src/preproc/PreProc.h
| M	src/regression/svr/SVR_light.cpp
| M	src/structure/DynProg.h
| M	src/structure/PlifBase.h
|  
* commit 3aca8c518ef238da7cbb6881a5f539da5af3bd23
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 19 10:14:18 2007 +0000
| 
|     make all objects to be derived from SGObject
| 
| M	src/classifier/Classifier.h
| M	src/classifier/LDA.cpp
| M	src/classifier/LDA.h
| M	src/classifier/LinearClassifier.h
| M	src/classifier/LinearClassifier.i
| M	src/distance/Distance.h
| M	src/distributions/Distribution.h
| M	src/features/Features.h
| M	src/kernel/Kernel.h
| M	src/lib/Array.h
| M	src/lib/Cache.h
| M	src/lib/Cplex.h
| M	src/lib/DynamicArray.h
| M	src/lib/File.h
| M	src/lib/Library.i
| M	src/lib/Mathematics.h
| A	src/lib/SGObject.h
| A	src/lib/SGObject.i
| M	src/lib/Signal.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.h
| M	src/lib/Trie.h
| M	src/lib/Version.cpp
| M	src/lib/Version.h
| M	src/preproc/PreProc.h
| M	src/structure/DynProg.h
| M	src/structure/PlifBase.h
|  
* commit d1bea94477532e9b9a299966101bf0693821bc88
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 18 16:04:50 2007 +0000
| 
|     get path interf.
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.i
|  
* commit d67667712b9b110287aa99c685c21edc09f224ec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 18 09:30:12 2007 +0000
| 
|     +yesterdays msplicer related fixes/debug output
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/DynProg.i
|  
* commit 5b50130c5026f429a95f32023a533a5303645a76
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Jan 17 10:10:05 2007 +0000
| 
|     some more outputs...
|     G
| 
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/structure/DynProg.cpp
|  
* commit b0f59aded96974a51c5437cffb3994f944d1b635
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Jan 15 17:01:33 2007 +0000
| 
|     some fixes and checks for oldtempvv and oldtempii.
|     (taking Soerens valgrind runs into account)
| 
| M	src/structure/DynProg.cpp
|  
* commit 45387a05176a2ef4bd964ed79b056757f3f203b4
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Jan 11 15:55:51 2007 +0000
| 
|     additional check ...
| 
| M	src/kernel/WeightedDegreeCharKernel.cpp
|  
* commit 4545d6601f5cb163a0ef8c4b9c83827aa5c374ab
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Jan 11 11:28:58 2007 +0000
| 
|     *** empty log message ***
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 4c68f55f2bdb7baa650d636be2136a963030b002
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 10 20:08:15 2007 +0000
| 
|     + configure/Makefile install path fix
| 
| M	src/Makefile
| M	src/configure
|  
* commit 14eb30950bf6f2fe064a9b7311041643cc04bd4f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 10 19:27:29 2007 +0000
| 
|     fix
| 
| M	Makefile
|  
* commit 47a0f5ac3a0193a5ab5efd1c67f689f906fbe35e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 10 19:22:36 2007 +0000
| 
|     + improved debian target / version generation
| 
| M	Makefile
| M	src/.version.sh
|  
* commit 4682221b52aafb63c5c734f2a1f9cf4031af8c8d
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Wed Jan 10 15:13:41 2007 +0000
| 
|     removed testfile
| 
| D	src/testfile
|  
* commit 402325697cd03ebe752025b47f004a1698f08cd2
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Wed Jan 10 14:41:31 2007 +0000
| 
|     added just to see whether the SVNPoller script works
| 
| A	src/testfile
|  
* commit 9f1e75bcc1c8b108b49e06ef3882fb0b397b4989
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 8 14:30:38 2007 +0000
| 
|     .version.sh calls svn info again, as $Id is not regularly updated...
| 
| M	src/.version.sh
|  
* commit ffa2d77c58b867b80822fe02b65448274ae76263
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 8 10:13:24 2007 +0000
| 
|     update copyright info
|     1999-2006 -> 1999-2007
| 
| M	src/classifier/Classifier.cpp
| M	src/classifier/Classifier.h
| M	src/classifier/KNN.cpp
| M	src/classifier/KNN.h
| M	src/classifier/KRR.cpp
| M	src/classifier/KRR.h
| M	src/classifier/KernelPerceptron.cpp
| M	src/classifier/KernelPerceptron.h
| M	src/classifier/LDA.cpp
| M	src/classifier/LDA.h
| M	src/classifier/LPM.cpp
| M	src/classifier/LPM.h
| M	src/classifier/LinearClassifier.cpp
| M	src/classifier/LinearClassifier.h
| M	src/classifier/Perceptron.cpp
| M	src/classifier/Perceptron.h
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/svm/CPLEXSVM.cpp
| M	src/classifier/svm/CPLEXSVM.h
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/GPBTSVM.h
| M	src/classifier/svm/KerthiPrimalSVM.cpp
| M	src/classifier/svm/KerthiPrimalSVM.h
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVM.h
| M	src/classifier/svm/LibSVM_oneclass.cpp
| M	src/classifier/svm/LibSVM_oneclass.h
| M	src/classifier/svm/MPD.cpp
| M	src/classifier/svm/MPD.h
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_libsvm.h
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpm.cpp
| M	src/classifier/svm/pr_loqo.cpp
| M	src/classifier/svm/pr_loqo.h
| M	src/distance/Canberra.h
| M	src/distance/Chebyshew.h
| M	src/distance/Distance.cpp
| M	src/distance/DistanceMachine.cpp
| M	src/distance/DistanceMachine.h
| M	src/distance/Jensen.h
| M	src/distance/Manhattan.h
| M	src/distance/Minkowski.cpp
| M	src/distance/Minkowski.h
| M	src/distance/RealDistance.h
| M	src/distance/StringDistance.h
| M	src/distributions/Distribution.cpp
| M	src/distributions/Distribution.h
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/hmm/GHMM.cpp
| M	src/distributions/hmm/GHMM.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/distributions/hmm/LinearHMM.h
| M	src/features/ByteFeatures.cpp
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.h
| M	src/features/CombinedFeatures.cpp
| M	src/features/CombinedFeatures.h
| M	src/features/FKFeatures.cpp
| M	src/features/FKFeatures.h
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/RealFeatures.cpp
| M	src/features/RealFeatures.h
| M	src/features/RealFileFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.cpp
| M	src/features/ShortFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/StringFeatures.cpp
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.cpp
| M	src/features/TOPFeatures.h
| M	src/features/WordFeatures.cpp
| M	src/features/WordFeatures.h
| M	src/gui/GUI.cpp
| M	src/gui/GUI.h
| M	src/gui/Matlab.cpp
| M	src/gui/Octave.cpp
| M	src/gui/Python.cpp
| M	src/gui/Python.h
| M	src/gui/TextGUI.cpp
| M	src/gui/TextGUI.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIDistance.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKNN.cpp
| M	src/guilib/GUIKNN.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUILabels.cpp
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIOctave.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIPython.h
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
| M	src/guilib/GUISVM.cpp
| M	src/guilib/GUISVM.h
| M	src/guilib/GUITime.cpp
| M	src/guilib/GUITime.h
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/AUCKernel.h
| M	src/kernel/CanberraWordKernel.cpp
| M	src/kernel/CanberraWordKernel.h
| M	src/kernel/CharPolyKernel.cpp
| M	src/kernel/CharPolyKernel.h
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordKernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.cpp
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/DiagKernel.cpp
| M	src/kernel/DiagKernel.h
| M	src/kernel/FixedDegreeCharKernel.cpp
| M	src/kernel/FixedDegreeCharKernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/HammingWordKernel.cpp
| M	src/kernel/HammingWordKernel.h
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/HistogramWordKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/KernelMachine.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearCharKernel.cpp
| M	src/kernel/LinearCharKernel.h
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalityImprovedCharKernel.cpp
| M	src/kernel/LocalityImprovedCharKernel.h
| M	src/kernel/ManhattenWordKernel.cpp
| M	src/kernel/ManhattenWordKernel.h
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchCharKernel.cpp
| M	src/kernel/PolyMatchCharKernel.h
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/PolyMatchWordKernel.h
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.h
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleLocalityImprovedCharKernel.cpp
| M	src/kernel/SimpleLocalityImprovedCharKernel.h
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparseNormSquaredKernel.cpp
| M	src/kernel/SparseNormSquaredKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreeCharKernelPolyA.cpp
| M	src/kernel/WeightedDegreeCharKernelPolyA.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WeightedDegreePositionPhylCharKernel.cpp
| M	src/kernel/WeightedDegreePositionPhylCharKernel.h
| M	src/kernel/WordMatchKernel.cpp
| M	src/kernel/WordMatchKernel.h
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/lib/Cache.h
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
| M	src/lib/DynamicArray.h
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/List.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/Parallel.cpp
| M	src/lib/Parallel.h
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.cpp
| M	src/lib/Time.h
| M	src/lib/Trie.h
| M	src/lib/Version.cpp
| M	src/lib/Version.h
| M	src/lib/common.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/lapack.cpp
| M	src/lib/lapack.h
| M	src/preproc/LogPlusOne.cpp
| M	src/preproc/LogPlusOne.h
| M	src/preproc/NormDerivativeLem3.cpp
| M	src/preproc/NormDerivativeLem3.h
| M	src/preproc/NormOne.cpp
| M	src/preproc/NormOne.h
| M	src/preproc/PCACut.cpp
| M	src/preproc/PCACut.h
| M	src/preproc/PreProc.cpp
| M	src/preproc/PreProc.h
| M	src/preproc/PruneVarSubMean.cpp
| M	src/preproc/PruneVarSubMean.h
| M	src/preproc/RealPreProc.h
| M	src/preproc/ShortPreProc.cpp
| M	src/preproc/ShortPreProc.h
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SortUlongString.cpp
| M	src/preproc/SortUlongString.h
| M	src/preproc/SortWord.cpp
| M	src/preproc/SortWord.h
| M	src/preproc/SortWordString.cpp
| M	src/preproc/SortWordString.h
| M	src/preproc/SparsePreProc.h
| M	src/preproc/StringPreProc.h
| M	src/preproc/WordPreProc.cpp
| M	src/preproc/WordPreProc.h
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/LibSVR.h
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
| M	src/structure/PlifArray.cpp
| M	src/structure/PlifArray.h
| M	src/structure/PlifBase.h
|  
* commit bf9438644d4418605f043eb68bf2a0f6a6b2cc1b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 8 10:06:56 2007 +0000
| 
|     -remove obsolete tests dir
| 
| D	src/tests/script2
| D	src/tests/test_it.scr
| D	src/tests/test_it2.scr
|  
* commit 2d83174548d1949cefc8678565590c031c678c34
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 8 09:23:29 2007 +0000
| 
|     +fix configure/parallel to really detect __SC_NPROCESSORS_ONLN
|     +allow setting of a single genestr
| 
| M	src/configure
| M	src/lib/Parallel.h
| M	src/structure/DynProg.h
| M	src/structure/DynProg.i
|  
* commit 792aca84b55c4681c3ff2625e2f5a55ecce2faed
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Jan 8 09:21:27 2007 +0000
| 
| M	src/structure/DynProg.cpp
|  
* commit 5911a0e82269efbb02f0a470096470caa5e2288d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 6 10:49:45 2007 +0000
| 
|     +#ifdef _SC_NPROCESSORS_ONLN
| 
| M	src/lib/Parallel.h
|  
* commit 58219ae9074793d25227faa0d7c70740ebbf4f62
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 5 17:16:10 2007 +0000
| 
|     +remove more of svmlight
|     +compiler tuning now takes place after compiler is detected
|     and only valid options are added
| 
| M	Makefile
| M	src/configure
|  
* commit eaaad53209e8d59b7a2da2acc025085893b3da1a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 5 15:18:24 2007 +0000
| 
|     +really remove all copyrighted "all rights reserved" SVMLight files + parts
|     
|      when called with, e.g.:
|     
|     	$ make vanilla-package COMPRESS=gzip EXTRAVERSION=+svn20070105 SVMLIGHT=no
| 
| M	Makefile
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/SVM.i
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUISVM.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/regression/svr/SVR_light.h
|  
* commit 1d21919d1d614d4498c64f26afc7142ca40da044
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 4 17:03:32 2007 +0000
| 
|     +all the necessary stuff for spam detection works now
|     	speed & accuracy are still an isssue
| 
| M	python/examples/stringfeatures.py
| M	src/features/Alphabet.cpp
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/gui/Matlab.cpp
| M	src/gui/R.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/guilib/GUIR.cpp
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommUlongStringKernel.i
| M	src/kernel/CommWordStringKernel.i
| M	src/kernel/Kernel.h
| M	src/kernel/Kernel.i
| M	src/kernel/StringKernel.i
| M	src/lib/common.h
|  
* commit d3bcba4988503eabeca98b7ecfc5b138ba5662a6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 3 23:50:46 2007 +0000
| 
|     +string features can now easily read strings-files from a directory (to classify e.g. spam)
| 
| A	python/examples/stringfeatures.py
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
|  
* commit 228883bc3344fd99a3c878c8c8b795b1054b4f13
| Author: Mikio Braun <mikio@cs.tu-berlin.de>
| Date:   Wed Jan 3 17:17:47 2007 +0000
| 
|     added a todo to KRR.cpp
| 
| M	src/classifier/KRR.cpp
|  
* commit 8f9d4039fee6257cffd463aa3aaed7b66711985a
| Author: Mikio Braun <mikio@cs.tu-berlin.de>
| Date:   Wed Jan 3 17:16:26 2007 +0000
| 
|     Hello!
|     
|     KRR is working now, together with two examples for python.
|     Yuhu!
|     
|     -M
| 
| A	python/examples/krr.py
| A	python/examples/numpy_krr_matplotlib.py
| A	python/examples/numpy_krr_sinc.py
| M	src/classifier/Classifier.i
| M	src/classifier/KRR.cpp
| M	src/classifier/KRR.h
| M	src/classifier/KRR.i
|  
* commit c9c39a5df4783559775ab3d8e222c0708349eb45
| Author: Mikio Braun <mikio@cs.tu-berlin.de>
| Date:   Wed Jan 3 15:59:16 2007 +0000
| 
|     forgot something
| 
| M	src/lib/common.h
| M	src/lib/lapack.cpp
| M	src/lib/lapack.h
|  
* commit c796534a1ce945c1ea8f06e281dd07ea47bc4a03
| Author: Mikio Braun <mikio@cs.tu-berlin.de>
| Date:   Wed Jan 3 15:52:21 2007 +0000
| 
|     Kernel-ridge-regression
| 
| A	src/classifier/KRR.cpp
| A	src/classifier/KRR.h
| A	src/classifier/KRR.i
|  
* commit 69975f2e7d556d31f9fef2eda52c209652ed5b67
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 3 11:39:55 2007 +0000
| 
|     +LINK is now is set from COMP_CPP
|     +Array uses ASSERT again and undefs/defs ASSERT
| 
| M	src/configure
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
|  
* commit d63b9765ab7a15b598542275ce02a63d6b1c7bde
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 30 00:08:35 2006 +0000
| 
| M	src/features/StringFeatures.h
|  
* commit 063796add0ac77bdb6e78fbde37225421df87403
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Dec 29 23:56:50 2006 +0000
| 
|     now with conservation.
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
|  
* commit 3e079f27d9d6daaacaa2cdfb6f53db29cf8b5e8f
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Dec 29 23:13:11 2006 +0000
| 
|     before I change the conservation stuff...
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/structure/DynProg.cpp
|  
* commit c336de49e6a762bfa0094569011815c2a893d479
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 29 23:01:34 2006 +0000
| 
|     +read_dir
| 
| M	src/features/StringFeatures.h
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/io.cpp
| M	src/lib/io.h
|  
* commit c0c739dddeddcf4bb85eb483475e8ace392ecfc9
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Dec 29 16:26:35 2006 +0000
| 
|     should work for nGASP cat-1
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/PlifArray.cpp
|  
* commit 2d0efc758902787198c26c8b3a25327ca5b40ba9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 29 16:20:54 2006 +0000
| 
|     missing endif
| 
| M	src/lib/lapack.h
|  
* commit 7635c10607c3f0379b094f9bd7c11d7cd6f3bbf3
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Dec 29 11:00:27 2006 +0000
| 
|     optimized best_path_trans svm computations.
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/CommWordKernel.h
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/lib/Mathematics.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit a83055135ea8c0f45f122220b7a65545a0dabf6b
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Dec 28 17:44:52 2006 +0000
| 
|     fixed ifndef -> ifdef line 118
| 
| M	src/lib/Array.h
|  
* commit 8979ef19ef67919c31434ef6fee1e49460f8c34e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 28 16:18:07 2006 +0000
| 
|     get rid of another bazillion of warnings
| 
| M	src/lib/io.cpp
| M	src/lib/io.h
|  
* commit 355a6e60e10113ac3bac732dee1be7cd96c87dab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 28 16:13:41 2006 +0000
| 
|     compile fix
| 
| M	src/structure/DynProg.cpp
|  
* commit 664cc2fee7d824f24b2eb0560feb66ad3bd355b7
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Dec 28 16:02:23 2006 +0000
| 
|     + sorry, forgot to check-in these files
| 
| A	src/exceptions/ShogunException.cpp
| A	src/exceptions/ShogunException.h
|  
* commit 0a88560672192ad749aca90ba69a5edd2afbcbc9
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 27 14:23:44 2006 +0000
| 
|     reverted to the old Array.h version including the statistics.
| 
| M	src/lib/Array.h
|  
* commit f0f476d563b2cb606d5a094025017938452386d8
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 27 13:34:18 2006 +0000
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit f76c120a233f84a9cfd4aabc4e4759eb2c341060
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Dec 22 12:11:19 2006 +0000
| 
|     + removed the rest of the ugly ifdefs
| 
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 855c54fe8cd64fcb85f93af81897c957758b2750
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Dec 22 11:48:01 2006 +0000
| 
|     + added sg_error function so lib/io
|     + removed ugly #ifdef HAVE_PYTHON throw Exception else CIO
|       by sg_error(func_ptr,fmt,...)
|     
|     TODO:
|     + not all exceptions were removed.
| 
| M	src/classifier/LDA.cpp
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/svm/MPD.cpp
| M	src/classifier/svm/Optimizer.cpp
| M	src/exceptions/Exception.h
| M	src/features/Alphabet.cpp
| M	src/features/ByteFeatures.cpp
| M	src/features/CharFeatures.cpp
| M	src/features/Features.cpp
| M	src/features/Labels.cpp
| M	src/features/MindyGramFeatures.cpp
| M	src/features/RealFeatures.cpp
| M	src/features/TOPFeatures.cpp
| M	src/features/WordFeatures.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearCharKernel.cpp
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionPhylCharKernel.cpp
| M	src/kernel/WordMatchKernel.cpp
| M	src/lib/io.cpp
| M	src/lib/io.h
|  
* commit eff3de69c6bf9e9866e3ac191500d1b8f2fffdca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 21 18:28:20 2006 +0000
| 
|     +tiny fixes
| 
| M	src/lib/io.h
| M	src/structure/DynProg.i
|  
* commit 3b265860b0975d04ec99e3c43d82f9b3dd58b221
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 21 13:23:10 2006 +0000
| 
|     +forgotten interface files
| 
| A	src/lib/Array.i
| A	src/lib/Array2.i
| A	src/lib/Array3.i
| A	src/lib/DynamicArray.i
|  
* commit dc122cd830d90228b714701c7ab0851bb0d83b50
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 21 11:26:31 2006 +0000
| 
|     -remove array profiling stuff (what are profilers for huh ?)
|     +dynprog now uses dynarray...
|     +actually anything that requires a list should use DynamicArray !
| 
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/lib/Library.i
| M	src/lib/io.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit d2eab0963890ecd6ea9242c20535040ca2987e75
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 20 23:36:03 2006 +0000
| 
|     a few changes related to path sampling.
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Array.h
| M	src/lib/Mathematics.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit e0599fce62452e1d25139066890e825f61021240
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 20 23:25:24 2006 +0000
| 
|     implemented some kind of suboptimal path sampling.
| 
| M	src/structure/DynProg.cpp
|  
* commit 96aec387424e1905fbe1ba040b545ec68f879aaf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 20 21:01:32 2006 +0000
| 
|     +split up r-package & vanilla-package build
| 
| M	Makefile
|  
* commit 842a7483377937b180fcc70cb13bb75e2e6a9e6e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 20 20:55:39 2006 +0000
| 
| M	src/gui/R.cpp
|  
* commit d3945fc242c77be2621f24c555e4c21874b5e5a4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 20 20:33:41 2006 +0000
| 
|     +build fix
|     -remove obsolete @hmm
| 
| D	matlab/examples/@hmm/backward.m
| D	matlab/examples/@hmm/bw_a.m
| D	matlab/examples/@hmm/bw_b.m
| D	matlab/examples/@hmm/bw_p.m
| D	matlab/examples/@hmm/bw_q.m
| D	matlab/examples/@hmm/forward.m
| D	matlab/examples/@hmm/gamma.m
| D	matlab/examples/@hmm/hmm.m
| D	matlab/examples/@hmm/xi.m
| M	src/gui/R.cpp
|  
* commit 3552f4ab26eeef861db14061316d36c3b7211e9e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 20 20:09:42 2006 +0000
| 
|     compile fix
| 
| M	src/lib/io.cpp
|  
* commit ec4ede1939c9b4b389192a2b712d1f7f8b160886
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 20 19:47:04 2006 +0000
| 
| A	src/structure/PlifArray.i
|  
* commit 9d05d730011baf3d372b59c793dc0b10efadbdfa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 20 18:21:36 2006 +0000
| 
|     +CAUTION: reverted DynamicArray to original dynarray (+some bugfixes)
| 
| D	src/g.R
| M	src/lib/DynamicArray.h
| M	src/structure/DynProg.cpp
| M	src/structure/PlifArray.cpp
| M	src/structure/Structure.i
|  
* commit 07a62605c1ad87ba0b7bc436f5fb7c8616008665
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 20 15:48:47 2006 +0000
| 
|     *** empty log message ***
| 
| M	src/lib/DynamicArray.h
|  
* commit 851f7ce0b41c3e43c43fded679332e0c45d5ae7f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 20 12:43:08 2006 +0000
| 
|     ifndef  -> ifdef HAVE_MATLAB...
| 
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
|  
* commit a6b8c7630ff2d9c02d785930451c597f01f679c8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 20 10:42:00 2006 +0000
| 
|     also erase .R files on clean
| 
| M	src/Makefile
| M	src/lib/Time.i
|  
* commit d874c710c3d492875ad3e0e99c2c783c05bbe7f9
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 20 10:38:17 2006 +0000
| 
|     does not compile without this fix.
| 
| M	src/guilib/GUIHMM.cpp
|  
* commit e2b95c27d4a9965806e0e8efb8f0d8a00049e836
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 20 09:10:08 2006 +0000
| 
|     +make configure append CFLAGS, CXXFLAGS from environment
|     +./configure --cflags= --cxxflags=
|     +COMPFLAGS_SWIG_CPP is generated from COMPFLAGS_CPP but does not give any warnings
|     +fix renaming Classes CTime -> Time
|     +fix several format string errors
|     +make gpdt svm use CIO::message
|     
|     want to know how many CPUs your machine has ? then do:
|     
|     from shogun.Library import Parallel
|     print Parallel.get_num_cpus()
|     
|     (msplicer already uses this :)
| 
| M	src/Makefile
| M	src/classifier/Classifier.h
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/configure
| M	src/lib/File.cpp
| M	src/lib/Library.i
| M	src/lib/List.i
| M	src/lib/Mathematics.i
| M	src/lib/Parallel.i
| M	src/lib/Signal.i
| M	src/lib/SimpleFile.i
| M	src/lib/Time.i
| M	src/lib/Trie.i
| M	src/lib/Version.i
| D	src/lib/config.i
| M	src/lib/io.cpp
| M	src/lib/io.i
|  
* commit 100cd82cae3ff1b70ac7471d334e9645c5fbba91
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 19 21:43:55 2006 +0000
| 
|     +export everything under lib as shogun.Library
|     (for that it was necessary to make the local classes in CTrie local)
| 
| M	src/distributions/hmm/HMM.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/lib/Cache.i
| M	src/lib/File.i
| A	src/lib/Library.i
| M	src/lib/List.i
| M	src/lib/Mathematics.i
| M	src/lib/Parallel.cpp
| M	src/lib/Parallel.h
| M	src/lib/Parallel.i
| M	src/lib/Signal.i
| M	src/lib/SimpleFile.i
| M	src/lib/Time.i
| M	src/lib/Trie.h
| M	src/lib/Trie.i
| M	src/lib/Version.i
| M	src/lib/common.h
| M	src/lib/io.i
|  
* commit 918290d7abf9363f8a082cedf806419b3355745c
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Tue Dec 19 17:41:19 2006 +0000
| 
|     + changed typecode error message to be part of a standard python 'TypeError' exception
| 
| M	src/lib/numpy.i
|  
* commit 2259cb96c4cd0bcba09861317ef6dadcc2f24554
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 19 17:06:23 2006 +0000
| 
|     + R swig support ( --enable-swig-R)
| 
| M	src/classifier/Classifier.i
| M	src/classifier/svm/SVM.i
| M	src/configure
| M	src/distance/Distance.i
| M	src/features/ByteFeatures.i
| M	src/features/CharFeatures.i
| M	src/features/Features.i
| M	src/features/Labels.i
| M	src/features/RealFeatures.i
| M	src/features/ShortFeatures.i
| M	src/features/SimpleFeatures.i
| M	src/features/WordFeatures.i
| M	src/kernel/Kernel.i
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/lib/common.h
| M	src/lib/common.i
| M	src/lib/numpy.i
| M	src/structure/DynProg.h
| M	src/structure/DynProg.i
| M	src/structure/Plif.i
| M	src/structure/Structure.i
|  
* commit 9fe9c87638427b2409ca3e8530cf30ffad6f057b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 19 13:58:30 2006 +0000
| 
|     at least all interfaces DO compile now
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/guilib/GUIOctave.h
| M	src/guilib/GUIPython.h
| M	src/guilib/GUIR.h
| M	src/lib/io.cpp
|  
* commit da1db6ef1226cc20d2cf878e5bb7ec48851e14a2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 19 13:30:21 2006 +0000
| 
|     gpdt compile fixes
|     octave string/char features fix
| 
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdt.h
| M	src/guilib/GUIOctave.cpp
|  
* commit 3e6ca259d3f051565463a5c0ef7713559778689b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 19 13:04:36 2006 +0000
| 
|     remove cplex related shadows...
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/lib/numpy.i
| M	src/regression/svr/SVR_light.cpp
|  
* commit 071d986fea41795d912c2423db27515f0af4fa33
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 19 12:35:03 2006 +0000
| 
|     +fix returning matrices #%#!#@? !!fortran order!!
| 
| M	src/classifier/svm/SVM.h
| M	src/lib/numpy.i
|  
* commit af748ef093b9346bd7d3429efd5f1226356018b5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 19 11:04:19 2006 +0000
| 
|     +don't include any of the gui/* guilib/* classes when building with HAVE_SWIG
|     (#ifndef SWIG ... #endif)
| 
| M	src/gui/GUI.cpp
| M	src/gui/GUI.h
| M	src/gui/Matlab.cpp
| M	src/gui/Octave.cpp
| M	src/gui/Python.cpp
| M	src/gui/Python.h
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| M	src/gui/TextGUI.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIDistance.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKNN.cpp
| M	src/guilib/GUIKNN.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUILabels.cpp
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIOctave.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIPython.h
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
| M	src/guilib/GUISVM.cpp
| M	src/guilib/GUISVM.h
| M	src/guilib/GUITime.cpp
| M	src/guilib/GUITime.h
|  
* commit c4a9dea278b7cb75ff50177f9d30215c2270f8df
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 19 10:37:21 2006 +0000
| 
|     + do not allow type conversion
|     + print out errors on wrong types
| 
| M	src/lib/numpy.i
| M	src/structure/Plif.i
| M	src/structure/PlifBase.h
|  
* commit f66746dbb72e6a71b5a0482a543d3e379f5ada3d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 19 09:59:55 2006 +0000
| 
|     +configure now enables further warnings: -Wall -Wformat -Wshadow
|     +removed rest of the shadow warnings
|     						- !WE NEED A CLEAR POLICY ON NAMING VARIABLES!
|     +introduced new hidden bugs
|     +Plifbase swigify
|     
|     NOTE: swig generates a bazillion of shadowed code, some is due to us
|     (naming in function headers), a lot is not
| 
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVM_oneclass.cpp
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpdtsolve.h
| M	src/classifier/svm/gpm.cpp
| M	src/classifier/svm/ssl.cpp
| M	src/configure
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/features/ByteFeatures.cpp
| M	src/features/CharFeatures.cpp
| M	src/features/FKFeatures.cpp
| M	src/features/RealFeatures.cpp
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/LinearCharKernel.cpp
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SparseNormSquaredKernel.cpp
| M	src/kernel/SpectrumKernel.cpp
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.cpp
| M	src/lib/numpy.i
| M	src/lib/suffixarray/ChildTable.cpp
| M	src/lib/suffixarray/ChildTable.h
| M	src/lib/suffixarray/ESA.cpp
| M	src/preproc/PruneVarSubMean.cpp
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
| M	src/structure/Plif.cpp
| A	src/structure/PlifBase.i
| M	src/structure/Structure.i
|  
* commit 96db54a85e5579d0feb242866f2699b6c4ad24b8
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Dec 18 23:55:19 2006 +0000
| 
|     minor fixes.
| 
| M	src/lib/DynamicArray.h
| M	src/structure/DynProg.cpp
|  
* commit 575d0696125dec9ec5ee45ea214be677f0d5e347
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Dec 18 18:34:51 2006 +0000
| 
|     extension to codon-based content sensors.
|     few fixes and cleanups.
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Array.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 1919750ed4c77e4b5cd965035197fe820244b8a9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 18 16:57:20 2006 +0000
| 
| M	src/lib/numpy.i
|  
* commit d231ee3e8ce600c3e53a253e23ea9108423d7df1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 18 15:14:00 2006 +0000
| 
| M	src/classifier/svm/SVM.h
|  
* commit 31cb67683fcfe8dbf059ffc80d84d1d0bcbcafc9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 18 15:09:50 2006 +0000
| 
|     debugging...
| 
| M	src/classifier/svm/SVM.h
|  
* commit fd836f543eee2121d968dbbfe925b8bcfef62541
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Dec 18 13:55:22 2006 +0000
| 
|     cleanup
| 
| M	src/structure/Plif.cpp
|  
* commit eb4f0cc53a9bb491171dca65e205d2730458ee97
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Dec 18 13:49:33 2006 +0000
| 
|     few more bugfixes in PlifArray and cleanup in GUIMatlab
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/DynamicArray.h
| M	src/structure/PlifArray.cpp
| M	src/structure/PlifArray.h
|  
* commit 4e42ee3faafbf9f0fed6b56c41ff88584aa8b124
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Dec 18 13:31:00 2006 +0000
| 
|     Many, many minor changes to avoid shadowing, which can easily lead (and has led) to mistakes.
| 
| M	src/classifier/KNN.cpp
| M	src/classifier/KNN.h
| M	src/distance/Distance.cpp
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/features/Labels.cpp
| M	src/features/SimpleFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/WordFeatures.cpp
| M	src/gui/Matlab.cpp
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordKernel.h
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/SpectrumKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WeightedDegreePositionPhylCharKernel.cpp
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/lib/DynamicArray.h
| M	src/lib/List.h
| M	src/lib/Trie.h
| M	src/preproc/PCACut.cpp
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
| M	src/structure/PlifArray.cpp
| M	src/structure/PlifArray.h
|  
* commit 62f33ac8e66048f9119d00372623483a6add6de2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 18 11:07:26 2006 +0000
| 
| M	src/lib/Mathematics.h
|  
* commit 3b9caad7068b33182fc940423a03a2bd5f290289
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 18 11:06:28 2006 +0000
| 
|     fix floor/ceil/round
| 
| M	src/lib/Mathematics.h
|  
* commit 521b4f432b7492487ffdc27626d9446b6336bcae
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Dec 18 10:20:19 2006 +0000
| 
|     ceil hangs on amd64 ... do you know a fix?
|     (I avoid using it).
| 
| M	src/lib/Mathematics.h
|  
* commit 6bd9dbd59230c521563e3d92556c1fb9e7dcfb82
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Dec 18 09:10:31 2006 +0000
| 
|     use DynamicArray instead of Array.
| 
| M	src/structure/PlifArray.cpp
|  
* commit 65e78b462043d4dc0b458d4d0d16e1bc8ff7e13c
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Dec 18 09:09:48 2006 +0000
| 
|     fixes in append_element() and element().
| 
| M	src/lib/DynamicArray.h
|  
* commit fbb4c6ddec267afa137e2293d06bf7e4a8ab4f87
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Dec 18 07:45:06 2006 +0000
| 
|     FibHeap cleanup.
| 
| M	src/structure/DynProg.cpp
|  
* commit e1aa674a9a5614a482df6a2bbf631b0a37fecb3f
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Dec 18 07:34:40 2006 +0000
| 
|     removed uneeded feature.
| 
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit 019fd98041b163ebf02635e58968c718c204278e
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Dec 18 07:20:29 2006 +0000
| 
|     missing file.
| 
| A	src/structure/PlifBase.h
|  
* commit 0c0b1531ade1855de9bf99531db8061e3ab7ec46
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Dec 17 23:04:34 2006 +0000
| 
|     improved the special case of only one plif for a transition.
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/PlifArray.h
|  
* commit b47e128daed68b13c928f55e159ab9e2d2501851
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Dec 17 22:59:35 2006 +0000
| 
|     Many changes related to Plifs:
|     - removed field next_pen in Plif
|     - created pure virtual parent class PlifBase
|     - created an container class PlifArray that can store several plifs
|     - changed the matlab interface:
|     	* plif structure ignores the next_pen field
|     	* the penalties matrix can be three dimensional now to support many plifs
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Array.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
| A	src/structure/PlifArray.cpp
| A	src/structure/PlifArray.h
|  
* commit 63ef1195e1f610d35616bb000b1bf2957f8a5db7
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Dec 17 19:55:45 2006 +0000
| 
|     tested version of the WeightedDegree kernel with shifts that allows to use conservation features.
|     use set_weights to set weights of the size seq_length x num_examples.
|     These weights have to be set for training *and* test examples. If not initialized, then 1 is used.
| 
| A	matlab/examples/test_wdshiftphyl_kernel.m
| M	python/examples/wd_kernel.py
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WeightedDegreePositionPhylCharKernel.cpp
| M	src/kernel/WeightedDegreePositionPhylCharKernel.h
| M	src/lib/Trie.h
|  
* commit a237b6127c422d58e9bec743a9fe5ce00c5e0a53
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Dec 17 19:46:34 2006 +0000
| 
|     more of the same kind ...
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 134e7c7605506e56f4faf56482ab0a80a2994a44
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Dec 17 19:39:47 2006 +0000
| 
|     *** empty log message ***
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 4c3fa4e302b3f13407770ee6a042191b99676407
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Dec 17 19:38:32 2006 +0000
| 
|     fixed a bug that affected the correct usage of the position weights in
|     combination with shifts.
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 1ea5536806f914f155d1d6bb6e1adc7c0001ec6f
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Dec 17 09:57:03 2006 +0000
| 
|     integrated phyl kernel in matlab interface.
|     Still untested.
| 
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WeightedDegreePositionPhylCharKernel.h
| M	src/lib/common.h
|  
* commit 413b91bacd9a44277652dbbfcbd5bdedb718e01b
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Dec 16 17:56:48 2006 +0000
| 
|     experimental code for using conservation weights in the WD shift kernel.
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| A	src/kernel/WeightedDegreePositionPhylCharKernel.cpp
| A	src/kernel/WeightedDegreePositionPhylCharKernel.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
| M	src/lib/common.h
|  
* commit 58e938df9e0b6c0313019018f95a4464bb131ec2
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Dec 16 17:01:10 2006 +0000
| 
|     cleanup
| 
| M	src/kernel/WeightedDegreePositionCharKernel.h
|  
* commit a4cce4cdbb499717e715d9cd3d775849617947d1
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Dec 16 17:00:57 2006 +0000
| 
|     cleanup
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 8cf041bd2d85343a6eda89743eddfea5cbd68b93
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 15 14:27:06 2006 +0000
| 
|     +typemap fix
|     +debugging..
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/DynProg.i
|  
* commit 53761c31932489db1570d80b51efd6b4f7c32bed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 15 11:52:05 2006 +0000
| 
|     cleanups
| 
| M	src/structure/DynProg.h
|  
* commit 464c86874dbb8a677003f6ef8601361687087fad
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 15 11:11:24 2006 +0000
| 
|     die on non linux arch / print err msg
| 
| M	src/configure
|  
* commit ac0c343e4812fdfc21ac75518e45e982f5671eda
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 15 11:08:42 2006 +0000
| 
|     +put -lcplex also in POSTLINKFLAGS
| 
| M	src/configure
|  
* commit 5bde4b1e38cdaeb741dab4823b2b1e190225e896
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 15 10:59:35 2006 +0000
| 
|     make cplex autodetection work on x86 & x86_64 ... all the others need to specify --includes --libs
| 
| M	src/configure
|  
* commit 2f5a9515d63f1e643dd295cca944944c698256e9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 15 10:34:38 2006 +0000
| 
|     remove obsolete file
| 
| D	src/kernel/WDCharKernel.i
|  
* commit 5b281678938a75399b3967572fa7916c0fc858e0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 15 10:33:36 2006 +0000
| 
|     +cplex autodetection
| 
| M	src/configure
|  
* commit 39f1a5f01efe2b25b899a48932caa308fd99a739
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 14 13:59:05 2006 +0000
| 
|     +document --destdir option
| 
| M	src/configure
|  
* commit 3d03ae566011f97066a4b2db5b1b2acf86281638
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 14 13:36:18 2006 +0000
| 
|     +configure fixes
|     +ceil,floor
|     +plif limits are now real valued
| 
| M	src/configure
| M	src/lib/Mathematics.h
| M	src/structure/DynProg.cpp
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit 36731756a3772382480427c7b2ca24a1b1e252f9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 14 07:19:12 2006 +0000
| 
|     + get_penalty access funcitons
| 
| M	src/structure/Plif.h
|  
* commit 767c151eb2f5d0976f7823cb0675e8ce77ed312d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 13 21:53:19 2006 +0000
| 
| M	R/Makefile
|  
* commit a0d880615b3f6e2f9a1e9168dea20fa589934cf2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 13 21:48:44 2006 +0000
| 
|     +debian target for R
|     +add licensing note for Msuffsort
| 
| M	R/Makefile
| M	src/LICENSE
|  
* commit 0bcc1480e6b28f884b153cb15350c10c597a3d8f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 12 10:58:21 2006 +0000
| 
|     remove unused fibheap file (which has unclear license)
| 
| D	src/lib/fibheap.cpp
| D	src/lib/fibheap.h
| M	src/structure/DynProg.cpp
|  
* commit 0111059e4fc76741adb1e434c46f5331edf2bd14
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 12 08:40:28 2006 +0000
| 
|     +autodetection for -fPIC/-fpic for R frontend
|     +./configure --enable-swig --enable-python is now ./configure --enable-swig-python
|     (just one configure option per interface for consistency)
|     +top level makefile is removed from distribution
|     +added SVMLin source code
| 
| M	Makefile
| M	src/CONTRIBUTIONS
| M	src/Makefile
| M	src/classifier/Classifier.i
| A	src/classifier/svm/SVMLin.cpp
| A	src/classifier/svm/SVMLin.h
| A	src/classifier/svm/SVMLin.i
| A	src/classifier/svm/ssl.cpp
| A	src/classifier/svm/ssl.h
| M	src/configure
| M	src/lib/common.h
|  
* commit ea11d9f0e71dc6e325d3cf7016f0f83dff4901d4
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 6 12:03:53 2006 +0000
| 
|     minor fixes.
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
|  
* commit 6f40c20a643bcf6aaeece85aa981d87d6cdb4a7d
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 6 11:09:16 2006 +0000
| 
|     many bug fixes.
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
|  
* commit caa31f5c7d79965ae98862332a6b3c5c1ac9c1e1
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 6 08:13:43 2006 +0000
| 
| M	src/structure/DynProg.cpp
|  
* commit 2a47e254ef7f35bb9d2a2cf30eefa7efdb605827
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 6 08:00:17 2006 +0000
| 
|     many fixes.
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Array.h
| M	src/structure/DynProg.cpp
|  
* commit e138ef957cf7b2d56cc1d8b6b4e5ed800d87628c
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 6 04:39:51 2006 +0000
| 
|     *** empty log message ***
| 
| M	src/guilib/GUIMatlab.cpp
|  
* commit 3978ca3839a02c111b7ed074f8ae304e3bfec167
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 6 04:31:34 2006 +0000
| 
|     extension for Dynamic programming with loss relative to another segmentation.
|     G
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 5906c4c81a5dd22f2a745110adf11c926efcf6d4
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Dec 5 20:50:21 2006 +0000
| 
|     minor bug fixed
|     G
| 
| M	src/structure/Plif.cpp
|  
* commit d78733a5ecdc74ed87a5d56298224cffd43b9210
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 5 20:08:36 2006 +0000
| 
| M	matlab/examples/hmm.m
|  
* commit fb8bf65409f030b7b52245932242c6a4ae9c7fbb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 5 17:58:12 2006 +0000
| 
| M	src/ChangeLog
|  
* commit da09401180f60ffaa8db1c56f31822e03c343db6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 5 17:56:36 2006 +0000
| 
|     preparing release 0.2.1
| 
| M	Makefile
| M	R/sg/DESCRIPTION
| M	doc/manual/Makefile
| M	matlab/examples/svm_classification.m
| M	python/examples/multiple_svms.py
| M	python/examples/multiple_svms_matplotlib.py
| M	python/examples/numpy_svm.py
| M	python/examples/numpy_svm_matplotlib.py
| M	python/examples/testsuite.py
| M	python/examples/wd_kernel2.py
| M	src/classifier/svm/SVM.i
| A	src/kernel/SpectrumKernel.i
| A	src/structure/DynProg.i
| A	src/structure/Plif.i
| A	src/structure/Structure.i
|  
* commit 90de1d0c767fcf00b291ba81154fe266536f2d60
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 5 01:56:59 2006 +0000
| 
|     +fix matlab build/compile for macosx (intel and ppc)
| 
| M	src/configure
| M	src/gui/Matlab.cpp
|  
* commit 6f9bb8a8ad5c39e4397e95058b5737745df4c213
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Dec 5 01:18:00 2006 +0000
| 
| M	src/structure/Plif.cpp
|  
* commit 960f1a3893873b908e09d1c01284499b32d792c3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 4 22:13:55 2006 +0000
| 
|     fix makefile for make 3.80
| 
| M	src/Makefile
|  
* commit 5befb8ea3ccacae60df8f44757544381bb07f06a
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Dec 4 12:55:38 2006 +0000
| 
|     removed binary files
|  
* commit e8e1b2cd614424de071e58e1c8a6b7bb29c3969c
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Dec 4 12:55:23 2006 +0000
| 
|     added forgotten files
| 
| A	src/exceptions/AlphabetException.cpp
| A	src/exceptions/AlphabetException.h
| A	src/exceptions/ClassifierException.cpp
| A	src/exceptions/FeatureException.cpp
| A	src/exceptions/KernelException.cpp
| A	src/exceptions/LabelException.cpp
| A	src/exceptions/PluginException.cpp
| A	src/exceptions/PluginException.h
| A	src/exceptions/SVMException.cpp
|  
* commit 3286fdca9178bc2ca46bba39abf6213eef18a624
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Dec 4 11:01:44 2006 +0000
| 
|     + added variable argument support for Exception constructors
|     + Wrapped all CIO(ERROR,.. -> Exception with
|        #ifdef HAVE_PYTHON
| 
| M	src/classifier/KNN.h
| M	src/classifier/LDA.cpp
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/svm/MPD.cpp
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/exceptions/ClassifierException.h
| M	src/exceptions/Exception.h
| M	src/exceptions/FeatureException.h
| M	src/exceptions/KernelException.h
| M	src/exceptions/LabelException.h
| M	src/exceptions/SVMException.h
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.cpp
| M	src/features/CharFeatures.cpp
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/features/Labels.cpp
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/features/RealFeatures.cpp
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.cpp
| M	src/features/WordFeatures.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearCharKernel.cpp
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleLocalityImprovedCharKernel.cpp
| M	src/kernel/SparseKernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WordMatchKernel.cpp
| M	src/preproc/PreProc.h
|  
* commit fcdfdcbf9b3705478db9ce221415c4a16dd7f6c0
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Sun Dec 3 12:20:44 2006 +0000
| 
|     some refactoring
| 
| M	src/Makefile
|  
* commit 9d36959db75eff71a0a9e88c77f21f3dcff1ba75
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Sun Dec 3 11:19:48 2006 +0000
| 
|     - make it possible to build the package without SVMlight
|     - .version.sh:
|       - don't call 'svn info' anymore
|       - use 'Id' keyword instead
|       - rationale: it should work in every source tree, not only in svn working dirs
| 
| M	Makefile
| M	R/Makefile
| M	src/.version.sh
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/SVM.i
| M	src/configure
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUISVM.cpp
| M	src/regression/svr/SVR_light.h
|  
* commit 9ff5b5f1008f512f090c7ee1a3db2226806ba51c
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Sat Dec 2 22:22:04 2006 +0000
| 
|     fix and beautify R build
| 
| M	R/Makefile
| A	R/Makefile.sed
| M	src/LICENSE.SVMlight
|  
* commit 8dbf84785df5e7a38f8d4cad1b9f5e06db10ed30
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Sat Dec 2 20:25:59 2006 +0000
| 
|     remove svn:executable from a file without shebang line
| 
| M	octave/examples/spec_kernel.m
|  
* commit 7074224ad336764270564e74a8ef62180b5d025c
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Sat Dec 2 19:29:30 2006 +0000
| 
|     fixed installation of non swig python module
| 
| M	src/Makefile
| M	src/configure
|  
* commit c83b3f98b58ee2242575285036c1fa5b14875276
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Sat Dec 2 18:29:08 2006 +0000
| 
|     fix permissions of installed python files
| 
| M	src/Makefile
|  
* commit ec22551ea9cae55ecc70cf23b461176bce90e1f7
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Sat Dec 2 17:20:33 2006 +0000
| 
|     more refactoring
| 
| M	src/Makefile
|  
* commit 2ed4e1a4f45e07e5d658f7e967095dd46a1a7f7a
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Sat Dec 2 17:13:29 2006 +0000
| 
|     - a little bit refactoring
| 
| M	Makefile
|  
* commit 1678f5af9b1b3819694cda68b73bee30d65dd672
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Sat Dec 2 17:01:42 2006 +0000
| 
|     - src/.version.sh: make sure we use a sane locale
|     - src/Makefile: simplified
|     - Makefile: bugfix + use svn in release target
| 
| M	Makefile
| M	src/.version.sh
| M	src/Makefile
|  
* commit 706c8999cd9e876d8189fb3483aa71d41d17c61a
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Sat Dec 2 16:20:45 2006 +0000
| 
|     make top level Makefile
|     - more flexible
|     - more readable
|     - less buggy (fixed the find command)
| 
| M	Makefile
|  
* commit f322dd1c9c7e5dfa3ca6511fc3ba13786434b444
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Dec 2 09:41:00 2006 +0000
| 
|     little extension...
|     G
| 
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit 26041b4e2186a7f3a6b01deeb010ab923179f322
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 1 14:17:21 2006 +0000
| 
|     +make clean now also kills *wrap.h
|     +more poster pics
| 
| M	doc/doxygen/Doxyfile
| M	src/Makefile
|  
* commit 9fb4a7941f84c5fe756435bf90b09d6a1ec2c266
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 30 15:44:27 2006 +0000
| 
| M	python/examples/svm_classificaton.py
|  
* commit 17fb94b481700cae6e24b277c26984175d32c49c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 30 15:30:13 2006 +0000
| 
|     fix string features in R
| 
| M	src/guilib/GUIR.cpp
|  
* commit bcbf39c26204318f0479d0d364d21bf9acd1e121
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Nov 30 14:53:11 2006 +0000
| 
|     + Moved exceptions to own folder.
|     TODO
|     + implement variable arguments stuff using streams
| 
| M	src/classifier/Classifier.h
| M	src/classifier/svm/SVM.h
| A	src/exceptions/ClassifierException.h
| A	src/exceptions/Exception.h
| A	src/exceptions/FeatureException.h
| A	src/exceptions/KernelException.h
| A	src/exceptions/LabelException.h
| A	src/exceptions/SVMException.h
| M	src/features/Features.h
| M	src/features/Labels.h
| M	src/kernel/Kernel.h
|  
* commit 82d2788176d1d7794faf739c971d79352898dbe8
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Nov 30 12:24:50 2006 +0000
| 
|     + added PluginException, SVMException and ClassifierException
|     + all python test cases are still running
| 
| M	src/classifier/Classifier.h
| M	src/classifier/KNN.h
| M	src/classifier/LDA.cpp
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/svm/MPD.cpp
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM.i
| M	src/classifier/svm/SVM_light.cpp
|  
* commit afe27414dc7c1d4dabaac6539e755fa3b09871c0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 30 12:09:29 2006 +0000
| 
|     +updated makefile/confiugre for R
| 
| M	src/Makefile
| M	src/configure
|  
* commit 0094cb4002b07c3d78576c2e71c96c9901808d59
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 30 12:09:00 2006 +0000
| 
|     +now
|     	make package
|     		builds a R package
|     	make install
|     		directly installs from the sg dir (w/o creating a additional package)
| 
| M	R/Makefile
| D	R/configure
| D	R/sg/inst/doc/sg.pdf
|  
* commit fa3fd6713423559d8d02e5e12585cfdad482fdda
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Nov 30 11:32:19 2006 +0000
| 
|     + Added classes LabelException, FeatureException and AlphabetException.
|     + Replaced all CIO::message(ERROR.. by the corresponding Exception.
| 
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.cpp
| M	src/features/CharFeatures.cpp
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/features/RealFeatures.cpp
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.cpp
| M	src/features/WordFeatures.cpp
|  
* commit 69400c7555ab04a8d27120db5e9190e19e02dd75
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Nov 30 10:53:27 2006 +0000
| 
|     + added class KernelException to Kernel.h
|     + modified whole kernel directory to support KernelException instead of using CIO::message(ERROR..
|       all other CIO::messages are untouched.
|     TODO:
|     + generate FeatureException and ClassifierException and modify files according the above rule.
| 
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearCharKernel.cpp
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleLocalityImprovedCharKernel.cpp
| M	src/kernel/SparseKernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WordMatchKernel.cpp
|  
* commit e952bc1e823cb2f772f1cccb60f1a463af571123
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 29 20:27:01 2006 +0000
| 
|     +octave install dir fixes
| 
| M	src/Makefile
| M	src/configure
|  
* commit 0bb132716ae2d19158d4ae043fa2f8dcf0a7dbaa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 29 19:17:32 2006 +0000
| 
|     +integrated torsten werners rpath/destdir configure patches
| 
| M	src/Makefile
| M	src/classifier/LDA.cpp
| M	src/configure
|  
* commit a69f6a8c07288cbabc187cb7b451fc367ceba483
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 29 12:04:59 2006 +0000
| 
|     +some asserts in Plif
|     +some work on lda
| 
| M	src/classifier/LDA.cpp
| M	src/classifier/LDA.h
| M	src/lib/Mathematics.cpp
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit 0b321a89ee8a2f3ce8816b004fe50ab7d8615d17
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 29 10:40:53 2006 +0000
| 
|     fix configure typo for lapack
| 
| M	src/configure
| M	src/structure/Plif.h
|  
* commit e792b957256a1a37591cd694230d1920effdd680
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Nov 28 19:27:53 2006 +0000
| 
|     nicer printing...
|     G
| 
| M	src/structure/DynProg.cpp
|  
* commit 5b8fbb7494b60f79375d6191fffc6543a30b458f
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Nov 28 17:44:19 2006 +0000
| 
|     bug fixed.
|     G
| 
| M	src/structure/DynProg.cpp
|  
* commit 72e1c7f70e7aa0ab03217d69f661d91afd45e50a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 28 15:44:30 2006 +0000
| 
|     +plif constructor has now has a len argument
| 
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit 0af374c789f4e7a25402357fdb546cef25e99ad7
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Nov 28 15:35:38 2006 +0000
| 
|     fixed a bug in Plif cache initialization.
|     other minor changes.
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/structure/DynProg.cpp
| M	src/structure/Plif.cpp
|  
* commit c09b4adf09d85c9fc023588d1af89da350e11536
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 28 14:17:35 2006 +0000
| 
|     +compile fixes for win32/cygwin (now matlab/R work at least partially)
|     +update install guide
| 
| M	doc/Makefile
| M	src/INSTALL
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/configure
| M	src/distance/Distance.cpp
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/lib/Mathematics.h
| M	src/lib/Parallel.h
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/io.cpp
| M	src/regression/svr/SVR_light.cpp
| M	src/structure/Plif.h
|  
* commit fc3b62be07834b8884452b7bdaa6ed85f4020b75
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 26 15:08:56 2006 +0000
| 
|     +many fixes...
| 
| M	python/examples/svm_classificaton.py
| M	python/examples/wd_kernel.py
| M	src/Makefile
| M	src/classifier/Classifier.h
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM.i
| M	src/classifier/svm/SVM_light.cpp
| M	src/configure
|  
* commit 8e70fca8dc6f6c9a5c11ba0f8cd502fcda450829
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 24 22:39:54 2006 +0000
| 
|     allow configure to be run from a path outside of shogun
| 
| M	src/configure
|  
* commit f9a89e40ddf560fef87700972efacf14b9d40b48
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 24 22:13:28 2006 +0000
| 
|     make shogun compile without svmlight
|     
|     !!!! NEVER EVER UNCOMMENT THE CHECKS FOR USE_SVMLIGHT !!!
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
|  
* commit 6b4d6bec390e5f6c74e9d9ac69283671420abfc1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 24 15:09:02 2006 +0000
| 
|     +add get_alphas
| 
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM.i
|  
* commit 609bc9cb85aa62eb300a63025e9f3c43df93cb5a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 24 08:20:46 2006 +0000
| 
|     SVM should be under Classifier:
|     
|     so: from shogun.Classifier import SVM
| 
| M	src/classifier/Classifier.i
| M	src/classifier/svm/SVM.i
|  
* commit 9be5f3a73796be062c195f5a2199de651d17e8f6
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Nov 23 13:43:16 2006 +0000
| 
|     a few mem leaks fixed..
|     
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Array.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit 2de3fec18caa7e6781788d8052a9c4e82348860e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 23 13:24:09 2006 +0000
| 
|     +cygwin path magic
| 
| M	src/configure
|  
* commit 02a3f47b299aeda216b5016a0ee624259762a8b3
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Nov 23 10:35:50 2006 +0000
| 
|     minor fixes/extensions in structure stuff.
|     G
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/Plif.cpp
|  
* commit 5c2cc5a9ff0fc9e1af2d1f6a2d4117bc2f2fde1c
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Nov 21 16:09:49 2006 +0000
| 
| M	src/structure/DynProg.cpp
|  
* commit acc2b3ac0744e7ae63e87bae0cee3444b5147f4c
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Nov 21 15:46:54 2006 +0000
| 
|     quite a few hacks...
|     G
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit a5945d39574907868f098b536db9ad39906c2d25
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 20 22:09:37 2006 +0000
| 
|     towards cygwin + matlab.
| 
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/configure
| M	src/distributions/hmm/HMM.cpp
| M	src/gui/GUI.cpp
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIHMM.cpp
| M	src/kernel/SpectrumKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/lib/Mathematics.h
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/io.cpp
| M	src/lib/suffixarray/BoundedRangeWeight.cpp
| M	src/lib/suffixarray/ChildTable.cpp
| M	src/lib/suffixarray/ConstantWeight.cpp
| M	src/lib/suffixarray/ESA.cpp
| M	src/lib/suffixarray/ExpDecayWeight.cpp
| M	src/lib/suffixarray/KSpectrumWeight.cpp
| M	src/lib/suffixarray/LCP.cpp
| M	src/lib/suffixarray/LCP.h
| M	src/lib/suffixarray/W_msufsort.cpp
|  
* commit 3aa9becb5b60a32f5b57d56813275174b884ab43
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Nov 20 16:39:27 2006 +0000
| 
|     DynProg derivatives work now in matlab.
|     G
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Array.h
| M	src/lib/Array3.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 413f625aee97a4c5a6c8196d9a42238d9a3f20d5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 18 15:50:17 2006 +0000
| 
|     + use die "error message" when something is missing + some matlab/win32 checks
| 
| M	src/configure
|  
* commit 37549dafa228d522e33e4a7dd613e7cbd977ac66
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 16 13:20:33 2006 +0000
| 
|     + a much much cooler python example with smoothed output
|     and a working colorbar :)
| 
| M	python/examples/svm_classificaton.py
|  
* commit 24e07050a1395749a1ec2f778d0c81ec2c3dbe52
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 16 13:00:04 2006 +0000
| 
|     +fix configure for R interface on osx
|     +updated readme/installation instructions, as I now **trommelwirbel**
|     managed to build all the interfaces (well lets ignore matlab) on OSX too.
|     +this *should* make the dynamic array resize function work with zero size again.
|     +configure now checks for lapack-3 first, as this is indeed different
|     from standard lapack (it uses a completely different api - and we need exactly
|     that one) I also enhanced the lapack .c compile test in configure.
| 
| M	src/INSTALL
| M	src/Makefile
| M	src/README
| M	src/configure
| M	src/lib/DynamicArray.h
|  
* commit c63192bbccd4380ed8f82e607e8f5cbdae0954f3
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Nov 15 20:27:16 2006 +0000
| 
|     increased to max_order=12.
|     G
| 
| M	src/guilib/GUIMatlab.cpp
|  
* commit 80d73a5187de77b8e8b9344026f3eb223810fa6a
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Nov 15 20:07:19 2006 +0000
| 
|     extended max_order for visualization from 8 to 10.
|     G
| 
| M	src/guilib/GUIMatlab.cpp
|  
* commit 95d8c1c6a7a70befb015f0b1c6cc200be0805e03
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Wed Nov 15 17:38:48 2006 +0000
| 
|     + addded support for "numpy_matrix = svm.get_alphas()"
| 
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM.i
|  
* commit d567ffeeb610890cd73c3d76557ec08dfad66ecc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 15 15:58:13 2006 +0000
| 
|     tiny fixes
| 
| M	R/Makefile
| M	R/sg/DESCRIPTION
| M	python/examples/testsuite.py
|  
* commit 6ffb1a8977f6a92bd31de6f01ec8d56351e34986
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 15 14:42:20 2006 +0000
| 
|     configure don't use lapack-3
| 
| M	src/configure
| M	src/guilib/GUIR.cpp
|  
* commit ba2b1600d8e90d8de0d167460acdd68eba132ae5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 14 23:33:51 2006 +0000
| 
|     +fix bug in set_features. the feature object should be created *AFTER* the alphabet
|     has a fully initialized histogram
| 
| M	src/guilib/GUIMatlab.cpp
|  
* commit 4fa2a9829eca103360d99d2e51955af1af3a774d
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Nov 14 13:16:22 2006 +0000
| 
|     implemented interface for best_path_trans_deriv.
|     Untested.
|     G
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/Plif.h
|  
* commit 3d60c9e407054c3884e2c7fe2f468d2dc368f567
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 12 16:43:01 2006 +0000
| 
|     this should make wd / wds kernel work for vanilla+linadd+batch kernel computation
|     
|     a) single threaded in svm training + testing
|     b) multi threaded in svm training + testing (including reactive_inactive_examples)
|     
|     I've found some bugs in combined kernel / batch computation/linadd ...
|     so be cautious with that... though it should work
|     
|     this of course helps all kernels in testing too and speed up other linadd enabled
|     kernels in svm training / testing too
|     
|     yay :-)
| 
| A	matlab/examples/test_wd_wds_parallel.m
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit c3795d4e95ec935463cb80e80e283440c8b971c6
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Nov 12 14:24:41 2006 +0000
| 
| M	python/examples/numpy_svm_matplotlib.py
| M	python/examples/wd_kernel.py
|  
* commit c4441df7b74fa09c9d0d83de76ab0de379369e47
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 12 12:38:12 2006 +0000
| 
|     THIS IS ALL UNTESTED AND PROBABLY BROKEN CODE
|     
|     +this should parallelize:
|     
|     SVM evaluation for:
|     	batch computation (WD kernel, WDS kernel, combined kernel)
|     	linadd / vanilla kernel computation
|     
|     SVM training for
|     	batch computation
|     	linadd / vanilla kernel computation
|     
|     THIS IS ALL UNTESTED AND PROBABLY BROKEN CODE
|     
|     I probably need help testing it...
| 
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 60ce0739167f7b2d1dc52ed04d86cfbbea9b77ff
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 12 10:44:20 2006 +0000
| 
|     experimental: parallelized compute_batch
| 
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
|  
* commit ac15e0612aaeeb8a9c14ba295d169cc450651689
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 10 20:41:06 2006 +0000
| 
|     + batch computation now needs an index array (enumeration of vectors for which output is to be computed)
|     + fix serious bug (which probably (not yet) never ever occured): batch computation + combined kernel assigned
|      the weight of the combined kernel not the subkernel
|     + stuff is only tested for wds kernel (same result as before + valgrind verified) but I am quite confident
|     this works for wd kernel (trivially) too / combined kernel untested same applies here
|     + fixed a valgrind error in WD_scoring
| 
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
|  
* commit ce94b6a32aa0f8ec57610301d74ebd4abd5c7755
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 10 18:07:03 2006 +0000
| 
|     +print out whether batch comput is on / on svm training
|     +fix make clean
|     +fix batch computation on reactivate_inactive_examples (should work,
|       i.e. in testing got same results
|     		a) with linadd on, batch off
|     		b) linadd off (batch on/off)
|     		c) linadd on, batch on
| 
| M	src/Makefile
| M	src/classifier/svm/SVM_light.cpp
| M	src/guilib/GUISVM.cpp
|  
* commit b8ce1872171a49f541b237a2325cc8cdff747399
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Nov 10 17:43:20 2006 +0000
| 
|     Fixed a problem with "compute_scoring". It previously produced different results on WDS and WD (actually the implementation was different). I copied the code from WDS... (not so nice). Alex is currently testing it.
|     G
| 
| M	src/kernel/WeightedDegreeCharKernel.cpp
|  
* commit 412be2486c9648e4c40b8428de18bd8ea1bce7a6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 10 17:10:29 2006 +0000
| 
|     call batchcomput only if num_suppvec >0 / free temporary arrays afterwards
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 83e1c12d1a07adca7b472503636cce491029a64c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 10 17:04:03 2006 +0000
| 
|     use cut -c 1 instead of head -c 1 (non posix...)
| 
| M	src/configure
|  
* commit 580144471fe2a4d9c355b4cf9554730e85c3ccbc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 10 07:08:42 2006 +0000
| 
|     + add a lot more build instructions in INSTALL
|     + fix configure etc to make python, octave, python/swig work on windows/cygwin
| 
| M	src/.generate_link_dependencies.py
| M	src/INSTALL
| M	src/Makefile
| M	src/configure
|  
* commit ced70524cdbc5d19be5ef984d5c2d1b03fd43142
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Nov 9 07:05:12 2006 +0000
| 
|     Implemented batch computation in svm_light inactive example reactivation.
|     UNTESTED. Soeren.. please have a look at it and try it.
|     Its still not optimal, as it computes the output for all examples...
|     
|     Gu
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 149473de22c087084018d116d220e2d53afc570c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 8 17:58:43 2006 +0000
| 
|     +fix == syntax error in configure
|     +ignore configure- files on make
|     +print test error in wd kernel py example
| 
| M	python/examples/wd_kernel.py
| M	src/Makefile
| M	src/configure
|  
* commit 3f455b78d18f929b177f0ff9e92d36d85b66fedd
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Nov 8 10:43:37 2006 +0000
| 
| M	python/examples/wd_kernel.py
|  
* commit cc58f5bf8e5e67372111bae5ae200bb6b665fdc6
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Tue Nov 7 18:17:59 2006 +0000
| 
|     + added module for io
|     + setting of loglevels is now possible
| 
| M	src/lib/io.h
| M	src/lib/io.i
|  
* commit fdc2460759fdbc99aa4400aa06b50167e2715565
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 7 07:48:13 2006 +0000
| 
|     matlab devel check only when matlab is on
| 
| M	src/configure
|  
* commit b9dc1b49007cc98d17bf9f87566456a5c82a4b82
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 6 22:01:15 2006 +0000
| 
|     matlab autodetection for cygwin
| 
| M	src/configure
|  
* commit 5c6d900f96458e9f770cf11704878ff523add521
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 6 21:52:58 2006 +0000
| 
|     now matlab should be autodetected
| 
| M	src/configure
|  
* commit 9c97f854093a92fdc503a254a13472bf0c2151e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 6 21:29:53 2006 +0000
| 
|     matlab autodetection
| 
| M	src/configure
|  
* commit ea8ca6150c2be893a65382ff51002c208a9a4819
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 6 21:21:50 2006 +0000
| 
|     configure+matlab autodetection
| 
| M	src/configure
|  
* commit 39568afc6526b197b1857321eb71a80babae4142
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Nov 6 16:52:19 2006 +0000
| 
|     + added Sigmoid and Chi2 kernel interfaces
| 
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/Chi2Kernel.i
| M	src/kernel/Kernel.i
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SigmoidKernel.i
|  
* commit 109171ba27d9c780245331a074497c6cf04f6dc1
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Nov 6 16:51:49 2006 +0000
| 
|     added Sigmoid and Chi2 Kernels to test cases
| 
| M	python/examples/testsuite.py
|  
* commit 86167d19aa1f0ea39e389ebc3fba30da496c0f99
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Nov 6 16:16:21 2006 +0000
| 
|     + added a testsuite for the shogun kernels
| 
| M	python/examples/testsuite.py
|  
* commit 8000898b853f9ae3c4e5fe735f5335fa6f8c1df2
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Nov 6 15:55:42 2006 +0000
| 
|     + added Constructors for RealFeatures
| 
| M	src/kernel/Kernel.i
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearKernel.i
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyKernel.i
|  
* commit 175a24ad2b2c098f8f4d78d63a6261c8a977e424
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Nov 6 13:03:46 2006 +0000
| 
|     + added framework for testsuite for the kernels
|     + modified interfaces for Poly and Linear Kernel
|     + added doctstring support via the %feature("autodoc", "0")
|     directive
|     TODO
|     + write some test cases for Poly, Gaussian and Linear
| 
| A	python/examples/testsuite.py
| A	python/examples/ut.py
| M	src/kernel/Kernel.i
| M	src/kernel/LinearKernel.i
| M	src/kernel/PolyKernel.i
|  
* commit 34780c0516b20ba63a5476ddda83a3ae9c7af949
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Nov 6 11:48:41 2006 +0000
| 
|     + added AUCKernel
| 
| M	src/kernel/AUCKernel.i
| M	src/kernel/Kernel.i
|  
* commit 00bc4ebdc29353cee75bfd3de212073142a2bdc1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 6 09:44:23 2006 +0000
| 
|     try to be smart and convert ~ into $HOME
| 
| M	src/configure
|  
* commit 37a68142e8d1bc4557a3bfccb44bd6341fa0d4eb
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Nov 6 09:17:47 2006 +0000
| 
| M	octave/examples/wd_kernel.m
| M	octave/examples/wds_kernel.m
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/structure/Plif.h
|  
* commit 3e422ed138f406471b0d07621d60f9501bfe3308
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 6 09:13:36 2006 +0000
| 
|     exclusive or for --enable-matlab --enable-python etc
| 
| M	src/configure
|  
* commit 4957e897f4c54874b4cf7432ba3b6cdb549dad80
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 5 12:25:13 2006 +0000
| 
|     +Distance .i files
| 
| A	src/distance/Distance.i
| A	src/distance/DistanceMachine.i
|  
* commit 4f88e8f643933d5d5550a16e8e1f463f7ffebe51
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 5 12:08:03 2006 +0000
| 
|     this fixes linadd/batch computation w/ WD kernel
| 
| M	python/examples/wd_kernel.py
| M	src/classifier/svm/SVM.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 1eedf077d15fe7e5f8390a03de5e19e88c619c61
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 5 08:00:24 2006 +0000
| 
|     ok this is what the what the wd kernel python interface now looks like:
|     
|     wdk = WeightedDegreeCharKernel(trainfeat, trainfeat, degree)
|     
|     or:
|     
|     weights = arange(1,degree+1,dtype=double)[::-1]/sum(arange(1,degree+1,dtype=double))
|     wdk = WeightedDegreeCharKernel(trainfeat, trainfeat, degree, weights=weights)
|     
|     
|     see:
|     python/examples/test_wdk.py
| 
| M	python/examples/multiple_svms.py
| M	python/examples/multiple_svms_matplotlib.py
| M	python/examples/numpy_svm.py
| M	python/examples/numpy_svm_matplotlib.py
| M	python/examples/test_wdk.py
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/WeightedDegreeCharKernel.i
|  
* commit 4f7b5d4c62aa45519ef62b4f9343b3ceb8458764
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 4 13:51:00 2006 +0000
| 
|     w/o batch computation/kernel optimization the py wd kernel
|     is now equiv to the oct/matlab versions
| 
| A	python/examples/test_wdk.py
| M	python/examples/wd_kernel.py
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreeCharKernel.i
|  
* commit 273c1d5585b7b017a6fee5bdb7c15c1d0861e05d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 3 19:14:08 2006 +0000
| 
|     make it compile again ...
| 
| M	src/classifier/Classifier.i
| M	src/classifier/svm/SVM.i
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/kernel/KernelMachine.i
|  
* commit 470627bfd902887d0835b980620c5685d1514f97
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Nov 3 14:48:45 2006 +0000
| 
|     fixed some bugs
| 
| M	src/classifier/Classifier.i
| M	src/classifier/svm/SVM.i
| M	src/kernel/KernelMachine.i
|  
* commit 9c31b2667c9beb559f77d45ccd56f4c2e003c2fd
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Nov 2 15:40:15 2006 +0000
| 
|     + basic hmm stuff is working under python
|     + need more tests
| 
| A	src/distributions/hmm/HMM.i
|  
* commit c34db1e4193bed0b65586f4dbb3c25a14aaca599
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Nov 1 21:25:16 2006 +0000
| 
|     compile-error fixed.
|     G
| 
| M	src/structure/DynProg.h
|  
* commit 278acc5d811831d355a71d3cb6c3afc21025d935
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 1 20:53:43 2006 +0000
| 
|     remove the structure stuff from guioctave to make it compile again -> we need a build bot!!!
| 
| M	src/gui/Octave.cpp
| M	src/guilib/GUIOctave.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
|  
* commit 257dddd8f31294f68d29860b8a7ddab10a8cc106
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Nov 1 18:46:45 2006 +0000
| 
| M	src/structure/DynProg.cpp
|  
* commit 6ea9e80020ccb2efb895f54f25d53870acdf68ac
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Nov 1 18:34:53 2006 +0000
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit f09f323da769a09692b792b6781bfc352ceceac0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 1 15:29:06 2006 +0000
| 
|     trying to fix the wd kernel... / python interf. for struct stuff
| 
| M	src/classifier/Classifier.i
| M	src/classifier/KNN.h
| M	src/classifier/KNN.i
| M	src/classifier/svm/SVM.i
| M	src/configure
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/KernelMachine.i
| D	src/kernel/WDCharKernel.cpp
| D	src/kernel/WDCharKernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/lib/fibheap.cpp
| M	src/structure/DynProg.h
| M	src/structure/Plif.cpp
|  
* commit 5ca0990d5e3c31de553070652ace073a9b0addae
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Nov 1 00:30:20 2006 +0000
| 
|     Implemented support for computing cumulative derivatives of the Plifs.
|     G
| 
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit e421788e9471334eb517cdcbb3dee4eee63d933b
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Nov 1 00:28:48 2006 +0000
| 
|     fixed a few bug that only appeared if ARRAY_ASSERT is used.
|     G
| 
| M	src/lib/DynamicArray.h
|  
* commit 0be3044bb1b981d152a6b731a5394ed4f8a2f6a8
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Oct 31 17:33:55 2006 +0000
| 
|     fixed a few bugs in the WD and WDS kernel related to position_weights.
|     G
| 
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit ac8d1dd0fc955f362fee1d9439e1e5eb24b0ad2a
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Oct 30 08:59:40 2006 +0000
| 
|     remove the old files.
|     G
| 
| D	src/lib/DynArray.h
| D	src/lib/DynArray.i
| D	src/lib/DynArray2.h
| D	src/lib/DynArray3.h
|  
* commit a730934efbc33eb22beba1eacecdddda6cbb2b80
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Oct 30 08:58:41 2006 +0000
| 
|     Created a static array class and added the automatic resize stuff in a derived class CDynamicArray. All higher dimensional arrays are derived from the static array class.
|     
|     G
| 
| M	src/kernel/CommUlongStringKernel.h
| A	src/lib/Array.h
| A	src/lib/Array2.h
| A	src/lib/Array3.h
| A	src/lib/DynamicArray.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 1577f0e0cb0f82fc120baee035a801dce595b455
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Oct 29 18:57:57 2006 +0000
| 
|     some last changes.
|     Should be all nice and smooth now.
|     G
| 
| M	src/lib/DynArray2.h
| M	src/lib/DynArray3.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 993c1ad20f1ffcbad64dec3bb09b5e56da650242
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Oct 29 18:42:19 2006 +0000
| 
| M	src/lib/io.h
|  
* commit b1c3dccad2e02ee358c8cfaed6b55cbbd07df2e9
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Oct 29 18:05:43 2006 +0000
| 
| M	src/structure/DynProg.cpp
|  
* commit 75c2dc1af00e2a537489a5f7566f944ab81e3909
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Oct 29 17:35:03 2006 +0000
| 
| M	src/lib/DynArray.h
|  
* commit 8e7d383dd89fe8b2a24d668d6ad05bdfb60afa30
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Oct 29 17:27:36 2006 +0000
| 
|     speedups and debug.
|     G
| 
| M	src/lib/DynArray.h
| M	src/lib/DynArray2.h
| M	src/lib/DynArray3.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 4f7201439c21bb8fd59fe61b9ef2813cfda32023
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 28 23:56:46 2006 +0000
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 9519e046a2081fcbb9d8758376ce96eda4b75c04
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 28 23:25:22 2006 +0000
| 
| M	src/structure/DynProg.cpp
|  
* commit 6df0281b82de1f10a140871558c1e635eeafe392
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 28 22:55:23 2006 +0000
| 
| M	src/lib/DynArray.h
| M	src/structure/DynProg.cpp
|  
* commit 7ce5a992ed8fe08496ac1d025cfd7787b87a92d9
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 28 22:36:03 2006 +0000
| 
| M	src/structure/DynProg.cpp
|  
* commit 969e67acd0d329543e22e8807afc0c2bacb8168e
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 28 21:27:02 2006 +0000
| 
|     *** empty log message ***
| 
| M	src/lib/DynArray.h
|  
* commit 6df0c950deb1210bf774c3af008549379394c5a7
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 28 21:20:14 2006 +0000
| 
|     minor fix.
|     G
| 
| M	src/lib/DynArray.h
|  
* commit d60361019a23c1b25646ea878344692c436151cd
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 28 21:07:01 2006 +0000
| 
|     added some statistics functions for DynArrays.
|     G
| 
| M	src/lib/DynArray.h
| M	src/lib/DynArray2.h
| M	src/lib/DynArray3.h
| M	src/lib/Trie.h
| M	src/structure/DynProg.cpp
|  
* commit 5008fda0a1474fd69e4746e21037df17199eb189
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Oct 27 11:54:14 2006 +0000
| 
|     seems to work, but it is slower...
|     G
| 
| M	src/lib/DynArray.h
| M	src/lib/DynArray3.h
| M	src/lib/io.h
| M	src/structure/DynProg.cpp
|  
* commit 513bbc29dc4ee4bfd64d9c27ac6c01119e33d1b3
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Oct 27 09:31:18 2006 +0000
| 
|     the matlab interface seems to still work after a few minor bug fixes.
|     performing more checks now.
|     
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/DynArray.h
| M	src/lib/DynArray2.h
| M	src/lib/DynArray3.h
| M	src/lib/io.h
| M	src/structure/DynProg.cpp
| M	src/structure/Plif.cpp
|  
* commit d3ea97fabbf11537410690a67cddf6a9ceb10de6
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Oct 27 08:36:03 2006 +0000
| 
|     Code is done.. now it needs some testing.
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/DynArray.h
| M	src/lib/DynArray2.h
| M	src/lib/DynArray3.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 639dfb2774d4504e313d33e033f52a2050cc9391
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 22:03:50 2006 +0000
| 
|     fixed a few DynArray bugs.
|     G
| 
| M	src/lib/DynArray.h
| M	src/lib/DynArray2.h
| M	src/lib/DynArray3.h
|  
* commit 51420473f9dad185e7fe87f38df81e5ab2d86a37
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 21:56:22 2006 +0000
| 
|     @Soeren: do I have to alloc the return argument as well, or is this done outside? (e.g. in best_path_get_states)
|     G
| 
| M	src/structure/DynProg.cpp
|  
* commit eb44b4af80a3363702bbe66940eefa91a0acca73
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 21:48:19 2006 +0000
| 
|     minor fix
|     G
| 
| M	src/structure/DynProg.cpp
|  
* commit 0c676ad22e4b6cca2d7bbf2c117ef80aaeca5647
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 21:46:24 2006 +0000
| 
|     The functions to be swigged are implemented... but not tested yet.
|     Please swig them.
|     
|     Gu
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 75c24b06f941297cf68899847d60aa3bf9fdae5d
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 21:17:27 2006 +0000
| 
| M	src/lib/DynArray.h
| M	src/lib/DynArray2.h
| M	src/lib/DynArray3.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 2b58b2de23888e9e0916f6406c59b9750659f2bf
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 20:31:27 2006 +0000
| 
|     compiles again
|     G
| 
| M	src/lib/DynArray2.h
| M	src/lib/DynArray3.h
|  
* commit 71d4f984a39b4fedb0c8ef504e1de1217fdbc531
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 19:38:21 2006 +0000
| 
| M	src/lib/DynArray2.h
| M	src/lib/DynArray3.h
| M	src/structure/DynProg.cpp
|  
* commit 893ac55dc0935bb91d92b2cfb1f2ff57584225d7
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 19:27:40 2006 +0000
| 
|     does not compile...
|     G
| 
| M	src/lib/DynArray.h
| M	src/lib/DynArray2.h
| M	src/lib/DynArray3.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit d860ca37466a9bf8279a4a85c0c9279e4cb69755
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 17:52:34 2006 +0000
| 
|     *** empty log message ***
| 
| M	src/structure/DynProg.h
|  
* commit 76a3d646366181de670d72416fac075eb75c5e4c
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Thu Oct 26 14:39:14 2006 +0000
| 
|     example with temporary python hack to overcome bug in svm.classify()
| 
| A	python/examples/wd_kernel2.py
|  
* commit efdf0c952bb13741a70be408b0b02452a4176cd1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 26 14:27:40 2006 +0000
| 
| M	src/TODO
|  
* commit 9c1e57ee6b3bbe971b404ef8351d6ffa825e1652
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 13:44:37 2006 +0000
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit d38943fccb846218ffcea0fc954e91205da7a685
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 13:12:45 2006 +0000
| 
| A	src/lib/DynArray3.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 7472cf088cfb36aa194ee013250389a4eb22d760
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 26 13:06:15 2006 +0000
| 
|     +wd scoring AAA example
| 
| A	matlab/examples/wds_shift_interp.m
|  
* commit 2d4bb0b24e44a2ab622e8aceac7cf1275ab6a097
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 12:39:13 2006 +0000
| 
|     removed model_prob_no_b_trans.
|     Hope nobody needs it.
|     G
| 
| M	src/gui/Matlab.cpp
|  
* commit e49fe93504b14332fc8825b28a2317cfd1273631
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 12:37:26 2006 +0000
| 
|     a lot of changes for the Dynamic Programing stuff.
|     It is in a new class now and in a new sub directory "structure".
|     
|     Gu
| 
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| D	src/distributions/hmm/HMM_bestpath.cpp
| D	src/distributions/hmm/HMM_bestpath_2struct.cpp
| D	src/distributions/hmm/HMM_bestpath_simple.cpp
| D	src/distributions/hmm/fibheap.cpp
| D	src/distributions/hmm/fibheap.h
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/lib/DynArray.h
| A	src/lib/DynArray2.h
| D	src/lib/Plif.cpp
| D	src/lib/Plif.h
| A	src/lib/fibheap.cpp
| A	src/lib/fibheap.h
| A	src/structure/DynProg.cpp
| A	src/structure/DynProg.h
| A	src/structure/Plif.cpp
| A	src/structure/Plif.h
|  
* commit 1108ce6e6dd22b05ae9112f4b9e166445f3c53ec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 26 11:42:10 2006 +0000
| 
|     forgotten fix for <float.h>
| 
| M	src/distance/Distance.h
| M	src/lib/Mathematics.h
|  
* commit 3f76e4814ce1243f352977295bdf3d1d2e330c01
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Oct 26 08:45:27 2006 +0000
| 
|     + added interface for several classifiers (not tested yet)
|     + changed "float.h" to <float.h> in distance/Distance.h
|     TODO
|     + add -lcblas -llapack -latlas to linking flags for swig _wrap files
| 
| M	src/classifier/Classifier.i
| M	src/classifier/KNN.i
| M	src/classifier/KernelPerceptron.i
| M	src/classifier/LDA.i
| M	src/classifier/LPM.i
| M	src/classifier/LinearClassifier.i
| M	src/classifier/Perceptron.i
| M	src/classifier/PluginEstimate.i
| M	src/distance/Distance.h
| M	src/kernel/Kernel.i
|  
* commit 151baeafdc63d27c44a2a66e6e237a9ac4a7bd5f
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 07:18:23 2006 +0000
| 
|     new Plifs compile and should also work.
|     Now working on the bestpath stuff.
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Plif.h
|  
* commit 720eebe766887cdf571cdae5f21e759def355b87
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Oct 25 20:45:54 2006 +0000
| 
| M	src/distributions/hmm/HMM_bestpath_2struct.cpp
|  
* commit 74aa8b2d3e38af8c1b9c953e93c30737562b58d2
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Oct 25 16:48:21 2006 +0000
| 
|     almost there...
| 
| M	src/distributions/hmm/HMM_bestpath.cpp
| M	src/lib/Plif.cpp
| M	src/lib/Plif.h
|  
* commit 7f1ed8c5b190dbe07a485c981bddf958cbc27f76
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Oct 25 16:40:08 2006 +0000
| 
| D	src/distributions/hmm/penalty_info.cpp
| D	src/distributions/hmm/penalty_info.h
|  
* commit de73d125d0f1823637931dd587074d975b21ed08
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Oct 25 16:39:58 2006 +0000
| 
|     tmp ci.
|     G
| 
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/HMM_bestpath.cpp
| M	src/distributions/hmm/penalty_info.cpp
| M	src/distributions/hmm/penalty_info.h
| M	src/guilib/GUIMatlab.cpp
| A	src/lib/Plif.cpp
| A	src/lib/Plif.h
|  
* commit 6aab9be9670326bc6ee2a12eeaef334408e77c3b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 25 13:41:33 2006 +0000
| 
|     +fix mathematics / realsparse features include
| 
| M	src/distance/Distance.h
| M	src/guilib/GUIDistance.cpp
|  
* commit 8b1a2240760d8a1207eb62e1de9306963fd6a4ea
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 25 13:34:20 2006 +0000
| 
|     + distances (christians work)
| 
| A	matlab/examples/test_knn.m
| M	src/classifier/KNN.cpp
| M	src/classifier/KNN.h
| A	src/distance/Canberra.cpp
| A	src/distance/Canberra.h
| A	src/distance/Chebyshew.cpp
| A	src/distance/Chebyshew.h
| A	src/distance/Distance.cpp
| A	src/distance/Distance.h
| A	src/distance/DistanceMachine.cpp
| A	src/distance/DistanceMachine.h
| A	src/distance/Geodesic.cpp
| A	src/distance/Geodesic.h
| A	src/distance/Jensen.cpp
| A	src/distance/Jensen.h
| A	src/distance/Manhattan.cpp
| A	src/distance/Manhattan.h
| A	src/distance/Minkowski.cpp
| A	src/distance/Minkowski.h
| A	src/distance/RealDistance.h
| A	src/distance/SimpleDistance.h
| A	src/distance/StringDistance.h
| M	src/gui/GUI.h
| M	src/gui/TextGUI.cpp
| M	src/gui/TextGUI.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| A	src/guilib/GUIDistance.cpp
| A	src/guilib/GUIDistance.h
| M	src/guilib/GUIKNN.cpp
| M	src/lib/common.h
|  
* commit f180488428c4e40859e27bb5435e13d4ee358ca7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 25 13:27:04 2006 +0000
| 
| M	python/examples/wd_kernel.py
|  
* commit 9babe4cfa952498f5e7fe5b41ac4eb9c2153e4ac
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Oct 25 10:57:44 2006 +0000
| 
| M	src/classifier/svm/CPLEXSVM.cpp
|  
* commit 6b775ebc4cf889257daf85fd5b4c7e8394ff9157
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Oct 24 10:16:57 2006 +0000
| 
| M	octave/examples/wd_kernel.m
|  
* commit 05b4b1773e9b8378d13fad17434ef90ec3ac6f53
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Oct 24 10:14:19 2006 +0000
| 
| M	src/lib/Trie.h
|  
* commit 111b686ca14a4426a1633a8527d7002466f3c570
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Oct 24 10:13:44 2006 +0000
| 
|     made sure nobody uses compact tries with mismatches (conceptually not really possible).
|     G
| 
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 4e83607d2fed5d78b5ffac9dc7a72465d2068e18
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Oct 24 08:10:18 2006 +0000
| 
| M	octave/examples/wds_kernel.m
|  
* commit 226c8f61e84ff62f6886aeca9f611667cf8500b9
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Oct 24 08:10:04 2006 +0000
| 
|     I moved the experimental code to WDS kernel class..
|     The function compute_scoring is still in the WDS class, most of the dependent functions are to be found in the class CTrie.
|     G
| 
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| D	src/kernel/WeightedDegreePositionCharKernel_new.cpp
| D	src/kernel/WeightedDegreePositionCharKernel_new.h
|  
* commit c5316fdd240ba6282fc00142fdb8ad7a70fb04bd
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Oct 23 20:59:21 2006 +0000
| 
|     transformed the compute_scoring code.
|     G
| 
| M	src/kernel/WeightedDegreePositionCharKernel_new.cpp
| M	src/kernel/WeightedDegreePositionCharKernel_new.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 051e91ac75c90e3a1b8592dea1604f36e515f267
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Oct 23 20:34:25 2006 +0000
| 
|     the test scripts for WD and WDS.
|     They should give deviations of about 1e-8.
|     G
| 
| M	octave/examples/wd_kernel.m
| M	octave/examples/wds_kernel.m
|  
* commit 643e1200e467ed699b6a991587c7ab93306b6920
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Oct 23 20:33:38 2006 +0000
| 
|     WD and WDS_new should be usable now with all combinations of options.
|     I did not test MKL.
|     
|     I will migrate the compute_scoring functions now and then rename the class to WeightedDegreePositionCharKernel (from WeightedDegreePositionCharKernel_new).
|     
|     Gu
| 
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel_new.cpp
| M	src/kernel/WeightedDegreePositionCharKernel_new.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 601807e117d73ba00746dcbf77b86208da18a317
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Oct 23 19:29:51 2006 +0000
| 
|     Was still working. I cannot find the bug. It has something to do with the terminal nodes, but I cannot figure it out.
|     Have to disable compact nodes for FASTBUTMEMHUNGRY WDS kernel..
|     G
| 
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel_new.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit fda70f7ffe1e744ff7d0e3e746cc828250a51787
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Oct 22 01:51:51 2006 +0000
| 
|     wds_kernel example with some more tests...
|     G
| 
| M	octave/examples/wds_kernel.m
|  
* commit df1590450f3eef811196703a4b255126afacbbed
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Oct 22 01:45:12 2006 +0000
| 
|     minor change.
|     G
| 
| M	src/lib/Trie.h
|  
* commit 60fd964aac3ef18f9200ee1b9d27c05c75a2196d
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Oct 22 01:43:48 2006 +0000
| 
|     Introduced SLOWBUTMEMEFFICIENT for batch_computation. Gives the same results as with normal kernels and with init_kernel_optimization.
|     
|     But there are still differences of up to 1e-3 in the outputs when I use FASTBUTMEMHUNGRY.
|     I explain it with numerical difficulties, but I'm not sure...
|     
|     Gu
| 
| M	src/kernel/WeightedDegreePositionCharKernel_new.cpp
|  
* commit b2db142c4da66a0dfbb8466831a68d567cbfd02e
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Oct 22 00:39:36 2006 +0000
| 
|     The option SLOWBUTMEMEFFICIENT works, but FASTBUTMEMHUNGRY still deviates (also batch_computation) for WDS kernel.
|     Numerical problems?
|     G
| 
| M	src/lib/Trie.h
|  
* commit cf575fdb6b479227a01fbeffff0a0c583e74f0d8
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Oct 22 00:29:26 2006 +0000
| 
|     there are still minor differences...
|     Why?
|     Gu
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel_new.cpp
| M	src/lib/Trie.h
|  
* commit bace6683ae9ec032d3c23a139dbd9c913b9586e2
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 21 21:55:10 2006 +0000
| 
|     almost works...
|     G
| 
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel_new.cpp
| M	src/lib/Trie.h
|  
* commit 9f68e397bbec590d8c4995e736fd60031c3e9dfc
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 21 18:00:40 2006 +0000
| 
|     WD kernel works again.
|     The new WDS kernel does not work yet.
|     If you don't use WeightedDegreePositionCharKernel_new, you are not affected.
|     G
| 
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel_new.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 2b53e187fc9455e90a70c73dfe2074f4c102cf94
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 21 17:08:32 2006 +0000
| 
|     still working.
|     G
| 
| M	src/lib/Trie.h
|  
* commit 1b0591cecdebeeb9d58edc52b5e5a02f1bd500b1
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 21 17:03:28 2006 +0000
| 
| M	src/lib/Trie.h
|  
* commit 111539ef5b9df387db470deb44208107ad92c283
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 21 16:56:38 2006 +0000
| 
| M	src/lib/Trie.h
|  
* commit 8533ee778cf168dd2a89257d3e355c2f21d8de7f
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 21 16:24:07 2006 +0000
| 
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel_new.h
|  
* commit a3d2a07c25bd489c4cb70fa2ce912e6a190934bf
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 21 16:18:46 2006 +0000
| 
|     Experimental... changed quite a few things in the WD and WDs code...
|     Still trying.
|     G
| 
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| A	src/kernel/WeightedDegreePositionCharKernel_new.cpp
| A	src/kernel/WeightedDegreePositionCharKernel_new.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit e817459efebe69c8277222245a92333af5ed8f27
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 21 16:13:21 2006 +0000
| 
| A	python/examples/spec_kernel.py
| M	python/examples/wd_kernel.py
|  
* commit 5b4938b00b9e09bfa96dadc2383e707d6d117ca0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 21 15:52:27 2006 +0000
| 
|     + spec kernel w/ sa (not working...)
| 
| M	src/classifier/svm/SVM.cpp
| M	src/features/Alphabet.i
| M	src/features/Features.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/kernel/Kernel.i
| M	src/kernel/SpectrumKernel.cpp
| M	src/kernel/SpectrumKernel.h
| M	src/kernel/StringKernel.i
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/lib/common.h
| M	src/lib/suffixarray/BWT.h
| M	src/lib/suffixarray/BoundedRangeWeight.cpp
| M	src/lib/suffixarray/BoundedRangeWeight.h
| M	src/lib/suffixarray/ChildTable.cpp
| M	src/lib/suffixarray/ChildTable.h
| M	src/lib/suffixarray/ConstantWeight.cpp
| M	src/lib/suffixarray/ConstantWeight.h
| M	src/lib/suffixarray/ESA.cpp
| M	src/lib/suffixarray/ESA.h
| M	src/lib/suffixarray/ErrorCode.h
| M	src/lib/suffixarray/ExpDecayWeight.cpp
| M	src/lib/suffixarray/ExpDecayWeight.h
| M	src/lib/suffixarray/I_LCPFactory.h
| M	src/lib/suffixarray/I_SAFactory.h
| M	src/lib/suffixarray/I_WeightFactory.h
| M	src/lib/suffixarray/InductionSort.cpp
| M	src/lib/suffixarray/InductionSort.h
| M	src/lib/suffixarray/KSpectrumWeight.cpp
| M	src/lib/suffixarray/KSpectrumWeight.h
| M	src/lib/suffixarray/LCP.cpp
| M	src/lib/suffixarray/LCP.h
| M	src/lib/suffixarray/MSufSort.cpp
| M	src/lib/suffixarray/MSufSort.h
| M	src/lib/suffixarray/Stack.h
| M	src/lib/suffixarray/W_kasai_lcp.cpp
| M	src/lib/suffixarray/W_kasai_lcp.h
| M	src/lib/suffixarray/W_msufsort.cpp
| M	src/lib/suffixarray/W_msufsort.h
|  
* commit 4606baead54234221c014ec2eebb229c66c02f77
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Fri Oct 20 17:44:46 2006 +0000
| 
|     massive speedup of compute_scoring
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
|  
* commit 1f42356f9d8e9406fd7cd65b0c68be1dad62a3af
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 20 11:22:50 2006 +0000
| 
|     +init_kernel_optimization in svm object
|     +fix numpy_svm exmaple
| 
| M	python/examples/numpy_svm.py
| M	python/examples/wd_kernel.py
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
|  
* commit 2f55ae6b032569cab61c83780c2520673c1522d1
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Oct 20 11:01:00 2006 +0000
| 
|     fixed batch computation bug.
|     G
| 
| M	src/classifier/svm/SVM.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit a89970a900af2523c8a97306ae1da73b60d5cc44
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 20 11:00:31 2006 +0000
| 
|     +fix wrong mem access
|     +return all degrees at once (reshape necessary...)
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 9e7ddf0721677b4e571b26cf891643fce5e2b36a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 20 10:38:04 2006 +0000
| 
| M	src/classifier/svm/SVM.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit ac3105f6855dfc87eb3f95268138051af41f6446
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Fri Oct 20 09:29:54 2006 +0000
| 
|     one more wd score computation fix
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit e2bef4f05f9e560725d54b71b19058a045e2d29c
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Fri Oct 20 09:08:02 2006 +0000
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 6d50f3efcd2f4cee5498022854e7f62fde811ce7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 20 07:31:04 2006 +0000
| 
|     wd kernel python example works...
|     BUT: not anymore w/ batchcomputation (gunnar ???)
|     	and gives different results w/ linadd - hmmhh...
| 
| M	python/examples/wd_kernel.py
|  
* commit 54ec47186f611cdc00a9593a05a805ddbb86cc83
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 19 23:25:54 2006 +0000
| 
|     + a wd kernel example, random acgt vs. aaaaa ...
|     	kernel matrix gives neat results,
|     but svm currently leads to a constant result (whoops ?)
| 
| M	src/configure
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/lib/io.cpp
| M	src/lib/numpy.i
|  
* commit 3d8a94f05e0c104d7ffce123a2d64114e9f1665b
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 22:24:20 2006 +0000
| 
| M	octave/examples/wd_kernel.m
|  
* commit a56b05c736b7b6983443317af33ed13fb7cece21
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 22:22:42 2006 +0000
| 
| M	src/lib/Trie.h
|  
* commit 433a93d8b105a7df275641ac7222f62346650554
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 22:19:21 2006 +0000
| 
|     WD Kernel with compacted leaves works ... finally.
|     In some toy experiments needed about 7 times less memory and is even a bit faster:
|     
|     10k trainings daten, 500k test daten, ohne optimierung
|     8642059 tree elements
|     49.59s svm training
|     0.64s  init_kernel_optimization
|     22.24s testing
|     
|     10k trainings daten, 500k test daten, mit optimierung
|     1395742 tree elements
|     45.37s svm training
|     0.37s init_kernel_optimization
|     17.78s testing
|     
|     max(abs(out-out2))=3.3993e-08
|     
|     Cheers, G
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 0710633f5e7348af12e0afd46e442b382168faaf
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 21:23:06 2006 +0000
| 
|     *** empty log message ***
| 
| M	src/classifier/svm/SVM.cpp
|  
* commit ec2873d85ed5466dd7a4a1003d7987cb5ef3c021
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 21:19:48 2006 +0000
| 
|     *** empty log message ***
| 
| M	src/lib/io.cpp
|  
* commit fc51f55012a5973389978b234b91feae4b806144
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 21:09:54 2006 +0000
| 
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 22f0cf787446baae333b7a5f987b1372cdd0d15b
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 20:38:31 2006 +0000
| 
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 8f9bb9705d0a17def0c4e585e2ddc2efdf1cf9bc
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 19:44:05 2006 +0000
| 
|     renamed Mathmatics into Mathematics
|     Many subsequent changes.
|     G
| 
| M	src/classifier/KNN.cpp
| M	src/classifier/KernelPerceptron.cpp
| M	src/classifier/LDA.cpp
| M	src/classifier/LPM.cpp
| M	src/classifier/Perceptron.cpp
| M	src/classifier/svm/KerthiPrimalSVM.cpp
| M	src/classifier/svm/MPD.cpp
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/pr_loqo.cpp
| M	src/distributions/Distribution.cpp
| M	src/distributions/Distribution.h
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/hmm/GHMM.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/HMM_bestpath.cpp
| M	src/distributions/hmm/HMM_bestpath_2struct.cpp
| M	src/distributions/hmm/HMM_bestpath_simple.cpp
| M	src/distributions/hmm/penalty_info.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.cpp
| M	src/guilib/GUIMath.cpp
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearCharKernel.cpp
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WordMatchKernel.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
| M	src/lib/io.cpp
| M	src/preproc/LogPlusOne.cpp
| M	src/preproc/NormOne.cpp
| M	src/preproc/PCACut.cpp
| M	src/preproc/PruneVarSubMean.cpp
| M	src/preproc/SortUlongString.cpp
| M	src/preproc/SortWord.cpp
| M	src/preproc/SortWordString.cpp
| M	src/regression/svr/SVR_light.cpp
|  
* commit 5da74cf0804218309e50974940b59b7384ad5847
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 19:30:21 2006 +0000
| 
| A	src/lib/Mathematics.i
| D	src/lib/Mathmatics.i
|  
* commit 120d93e082fc081b56afca9dc0bcbafd054b2bc1
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 19:29:45 2006 +0000
| 
|     many changes still working.
|     G
| 
| M	src/lib/Cache.h
| M	src/lib/DynArray.h
| A	src/lib/Mathematics.cpp
| A	src/lib/Mathematics.h
| D	src/lib/Mathmatics.cpp
| D	src/lib/Mathmatics.h
| M	src/lib/Mathmatics.i
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
| M	src/lib/io.cpp
|  
* commit 9dde5629feb3473aaf5936ab31516aecf799124e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 19 19:02:43 2006 +0000
| 
|     ...looks promising... but needs another check by alex
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/lib/suffixarray/MSufSort.h
|  
* commit 51ec3c919b247123257b2dae959a917e69b589c7
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Oct 19 16:41:07 2006 +0000
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
|  
* commit 00d91e95b1e76ff61b48b4689cb6c8e796d3f0d7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 19 15:04:20 2006 +0000
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
|  
* commit 7f513296d09858f338a8297bbbababfead30f7ff
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 19 14:09:54 2006 +0000
| 
| M	src/README.developer
|  
* commit aa35bb0bd9e30a86952dbfd2376b239ab5d367f2
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Oct 19 13:01:46 2006 +0000
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
|  
* commit 641d79469bfd56dfaf3c7627a3837c0db01e00de
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 19 10:49:03 2006 +0000
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
|  
* commit 16d43006c913326cbdc3d85eec5df6d7a4860cf7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 19 10:21:53 2006 +0000
| 
| M	python/examples/wd_kernel.py
| M	src/features/ByteFeatures.h
| M	src/features/ByteFeatures.i
| M	src/features/CharFeatures.h
| M	src/features/CharFeatures.i
| M	src/features/RealFeatures.i
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/lib/numpy.i
|  
* commit 10727b0001b1bd2a3dd03f4fd466a3509d6a572f
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 10:09:45 2006 +0000
| 
|     fixed bug.
|     G
| 
| M	src/features/Alphabet.cpp
|  
* commit 403327df22e6f6ea30a32d1a28b9d5e4cfe064ed
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 10:02:23 2006 +0000
| 
|     Introduced an "RNA" alphabet.
|     G
| 
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/lib/common.h
|  
* commit ad4a701e1c1e40fdfaaae684a4425d550079480e
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 09:51:36 2006 +0000
| 
|     still working...
|     G
| 
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 2110f7cc643f81a95714e7ab6d667c1d3e9473a0
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 08:46:50 2006 +0000
| 
|     experimental WD kernel with compacted ends...
|     I'm still testing.
|     G
| 
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit a188ab999ee7d11584e9ac723d18cf5db66eb380
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 18 16:21:31 2006 +0000
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 6a06e858293e20959cdf13b192d325a00eea20f6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 18 11:48:27 2006 +0000
| 
| M	src/configure
|  
* commit 65aba04739c7ee43f43cc6077a74a1c450cbd972
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 18 11:44:38 2006 +0000
| 
|     +disable -fexception w/ matlab as pthreads won't compile (syntax errr...
|     +exclude configure-* from linking
| 
| M	src/Makefile
| M	src/configure
|  
* commit fa36326f34404b58c130d45a5431d778a87b65dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 18 10:43:27 2006 +0000
| 
|     +some more matlab detection
| 
| M	src/configure
|  
* commit 31c2e848d5ef3b52d78b00b420c88a29467e5e89
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 18 10:25:06 2006 +0000
| 
| A	src/kernel/ConstKernel.i
|  
* commit bbb96065c06e127e892461511f0380efec7da027
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 18 09:18:37 2006 +0000
| 
| M	src/README.developer
| M	src/TODO
|  
* commit c7734de6ce8375152f1bcaffd4ee4eea14a00ab6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 18 08:58:32 2006 +0000
| 
|     +updated examples (retreat talk)
|     +fix makefile dependency generation
|     +fix swig IN/OUT typemaps to use fortran order
| 
| M	octave/examples/spec_kernel.m
| M	octave/examples/wds_kernel.m
| M	python/examples/multiple_svms_matplotlib.py
| A	python/examples/numpy_svm_matplotlib.py
| M	python/examples/wd_kernel.py
| M	src/.generate_link_dependencies.py
| M	src/Makefile
| M	src/features/Labels.cpp
| M	src/features/RealFeatures.h
| M	src/features/RealFeatures.i
| M	src/features/SimpleFeatures.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/Kernel.i
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/lib/numpy.i
|  
* commit cb9e965a0e92e8d43b1cbed3d2515be741fc72c3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 15 21:52:22 2006 +0000
| 
|     oopsi, wrong malloc sizes
| 
| M	src/lib/numpy.i
|  
* commit b7c011d54656b9fb56b882555817faacd232c0a9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 15 21:19:56 2006 +0000
| 
| M	R/examples/hmm.R
|  
* commit 3981c19dff507e206d1b5ba950d8bfe2c1fa38f5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 15 20:33:52 2006 +0000
| 
|     +fix octave support under osx
| 
| M	src/configure
|  
* commit 601aade3ddb48dc1b562ce8db6fb08aac7246591
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 15 19:37:42 2006 +0000
| 
|     create a .dll (not .so) for R/python under cygwin
| 
| M	src/configure
|  
* commit 3385303b8c2012b59d037ec61e3eb09f0046cb95
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 15 18:56:48 2006 +0000
| 
|     +make configure work on osx w/ python
|     	try ./configure --enable-python --python=python2.4
|     if python -c "import numpy;" fails
| 
| M	src/Makefile
| M	src/configure
| M	src/guilib/GUIPython.cpp
|  
* commit 2d4cb1369187d12e51011b38babc9a4ef08e8891
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 15 17:38:26 2006 +0000
| 
|     +configure now does a lot more checks (tries to build simple R,octave,python,numpy
|     		scripts, checks for makedepend,swig etc...)
|     +Makefile should take care of swig dependencies now (incorporated in .generate_link_dep...)
|     +fixed octave,python and R interface to work again :-)
|     +python now uses compatibility layer of numpy -> no more numarray necessary
|     +updated all (oct/py/R) examples to work again
| 
| M	R/Makefile
| M	R/examples/hmm.R
| M	R/sg/DESCRIPTION
| M	R/sg/inst/doc/sg.pdf
| M	octave/examples/hmm.m
| M	octave/examples/wd_kernel.m
| M	octave/examples/wds_kernel.m
| D	python/examples/fabio_test.py
| D	python/examples/fileA.dna
| D	python/examples/fileB.dna
| M	python/examples/multiple_svms.py
| M	python/examples/numpy_commands.py
| M	python/examples/svm_classificaton.py
| M	python/examples/svr_regression.py
| M	src/.generate_link_dependencies.py
| M	src/Makefile
| M	src/configure
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.cpp
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.h
| M	src/features/FKFeatures.cpp
| M	src/features/FKFeatures.h
| M	src/features/RealFeatures.cpp
| M	src/features/RealFeatures.h
| M	src/features/RealFeatures.i
| M	src/features/RealFileFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.cpp
| M	src/features/ShortFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/TOPFeatures.cpp
| M	src/features/TOPFeatures.h
| M	src/features/WordFeatures.cpp
| M	src/features/WordFeatures.h
| M	src/gui/Octave.cpp
| M	src/gui/Python.h
| M	src/gui/R.cpp
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIR.cpp
| M	src/lib/io.cpp
| M	src/lib/lapack.cpp
| M	src/lib/numpy.i
| M	src/lib/suffixarray/MSufSort.h
|  
* commit 780d5d6c17bdcebe2fcb76ef2a70b01089b65599
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Oct 13 16:03:27 2006 +0000
| 
|     *** empty log message ***
| 
| M	python/examples/numpy_svm.py
|  
* commit cdfffc32d3fffcb85acb43113fb09ef7041ea054
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 13 15:56:29 2006 +0000
| 
| M	src/ChangeLog
| M	src/TODO
|  
* commit 20df41d077fa0980e22aefe3c8c6a217c349584e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 13 15:49:16 2006 +0000
| 
|     ...finally working numpy & swig
| 
| A	python/examples/numpy_svm.py
| M	src/Makefile
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVM.h
| M	src/classifier/svm/LibSVM.i
| M	src/classifier/svm/SVM.i
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/SVM_light.i
| M	src/features/ByteFeatures.i
| M	src/features/CharFeatures.i
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/Labels.i
| M	src/features/RealFeatures.i
| M	src/features/ShortFeatures.i
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/WordFeatures.i
| M	src/kernel/GaussianKernel.i
| M	src/kernel/Kernel.i
| M	src/lib/numpy.i
|  
* commit 2564faccdcfaf5b91d43c9b2d94f0f2586ec42f4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 12 16:03:05 2006 +0000
| 
|     this works now :)
|     
|     import features.Features as f
|     import numpy as N
|     
|     feat1 = f.CharFeatures(N.chararray((10,5),1),f.DNA)
|     feat2 = f.ShortFeatures(N.zeros((10,5),N.short))
|     feat3 = f.WordFeatures(N.zeros((10,5),N.uint16))
|     feat4 = f.RealFeatures(N.zeros((10,5),N.double))
|     feat5 = f.ByteFeatures(N.zeros((10,5),N.uint8),f.DNA)
|     lab = f.Labels(N.array([1,2.,3]))
| 
| A	python/examples/numpy_commands.py
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.i
| M	src/features/CharFeatures.h
| M	src/features/CharFeatures.i
| M	src/features/Features.i
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/Labels.i
| M	src/features/RealFeatures.h
| M	src/features/RealFeatures.i
| M	src/features/ShortFeatures.i
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/WordFeatures.i
| M	src/lib/numpy.i
|  
* commit 6cc467b0f0e2dbd95e078ecc5d34b50e4b599c50
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Oct 12 14:06:41 2006 +0000
| 
|     dadfa
| 
| M	src/features/CharFeatures.i
| M	src/features/Features.i
| M	src/lib/numpy.i
|  
* commit e421f171999d8a675e524996e916e6d8e6a0ffb5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 12 12:08:11 2006 +0000
| 
|     ...
| 
| M	octave/examples/wd_kernel.m
| M	python/examples/wd_kernel.py
| M	src/Makefile
| M	src/features/CharFeatures.h
| M	src/features/CharFeatures.i
| M	src/lib/numpy.i
|  
* commit 6603757737dbc60e7d16cb9f8eafc6f73add4968
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Oct 12 08:38:35 2006 +0000
| 
|     example
| 
| M	python/examples/wd_kernel.py
|  
* commit 43b6cf46faef77bfbb111e81e93d6a450ff8c8a9
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Oct 12 08:31:43 2006 +0000
| 
|     trying to get numpy typemapping to work.
| 
| M	src/features/CharFeatures.h
| M	src/features/CharFeatures.i
| M	src/lib/numpy.i
|  
* commit 70f4c395f2cebf17dd757d5233bff83cb58c7f7c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 11 20:26:16 2006 +0000
| 
|     it works :-)
|     
|     import numpy as N
|     import features.Features as f
|     a=f.CCharFeatures(f.DNA, 10)
|     print a.doubleSum(N.array([1.,2.,3.,4.,5.]))
|     a.testNumpy2(N.zeros((5,10),'i'))
|     
|     x=N.chararray((3,10),1)
|     for i in xrange(10):
|     	x[(0,i)]='a'
|     for i in xrange(10):
|     	x[(1,i)]='b'
|     for i in xrange(10):
|     	x[(2,i)]='c'
|     
|     a.testNumpy(x)
|     
|     a.doubleSum([1,2,3.14,4])
| 
| M	src/features/CharFeatures.h
| M	src/features/CharFeatures.i
| M	src/features/Features.i
| M	src/lib/numpy.i
|  
* commit 0b0d94236b47cce72e6f3470e1fe002e22b324a9
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Wed Oct 11 17:29:00 2006 +0000
| 
|     added some shit
| 
| M	src/features/CharFeatures.h
| M	src/features/CharFeatures.i
| M	src/lib/numpy.i
|  
* commit 7e1ed9a2634ef8cfee39d77f5a5991e01b43a5e1
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Wed Oct 11 14:13:15 2006 +0000
| 
|     cleaned up numpy file added numpy.i to Features.
| 
| M	src/features/Features.i
| M	src/lib/numpy.i
|  
* commit 07bbdf40a05eb09dba42b5c6f22b9c7e792b7050
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Wed Oct 11 14:00:53 2006 +0000
| 
|     added numpy typemaps
| 
| A	src/lib/numpy.i
|  
* commit 4211113c280171d40ba824704e55cdfda3ff3a48
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Wed Oct 11 13:41:23 2006 +0000
| 
|     removed LONG from WeightedDegreeCharKernel, fix for the "thisown" problem.
| 
| M	src/features/CharFeatures.i
| M	src/features/Features.i
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/Labels.i
| M	src/features/SimpleFeatures.h
| M	src/kernel/Kernel.i
| M	src/kernel/SimpleKernel.i
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/lib/common.i
|  
* commit 55b27489ada1b4398d2933926af3653747259a8d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 11 13:00:51 2006 +0000
| 
|     + also check alphabet for uint8 charfeatures (not just string*freatures)
| 
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/guilib/GUIMatlab.cpp
|  
* commit b56cb397e5a97fefcfba1e70dfc31a37ebd2273e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 11 12:24:10 2006 +0000
| 
|     + IUPAC_NUCLEIC_ACID and IUPAC_AMINO_ACID alphabets (16 / 23 symbols)
| 
| M	src/features/Alphabet.cpp
| M	src/lib/common.h
|  
* commit d60cd92353280ec59e4fce60d054f6f4ecdf063a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 11 11:03:32 2006 +0000
| 
|     -removed sparserealfeatures
|     +introduce strict alphabet checking on set features (valid number of symbols
|     		and whether each symbol is valid will be checked)
|     - remove B_n B_* etc from DNA alphabet as DNA == ACGT
| 
| M	src/distributions/hmm/HMM.cpp
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/ShortFeatures.cpp
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| D	src/features/SparseRealFeatures.cpp
| D	src/features/SparseRealFeatures.h
| D	src/features/SparseRealFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/WordFeatures.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIPreProc.cpp
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparseNormSquaredKernel.cpp
| M	src/kernel/SparseNormSquaredKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 806d31fdeb3668eb7e475187300830235c93247e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 11 10:02:50 2006 +0000
| 
| M	src/Makefile
| M	src/TODO
| M	src/classifier/svm/SVM_light.h
|  
* commit a3312140d4cab145264c4403f0eccf8eb4967686
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Wed Oct 11 09:45:30 2006 +0000
| 
|     modified interfaces for SVMs, still a problem with inheritance.
| 
| M	src/Makefile
| M	src/classifier/svm/SVM.i
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/SVM_light.i
| M	src/classifier/svm/__init__.py
|  
* commit 58c88896d8f8bb0f8d3c020c2580295ab419ad49
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 11 09:14:43 2006 +0000
| 
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparseNormSquaredKernel.cpp
| M	src/kernel/SparseNormSquaredKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
| A	src/kernel/SpectrumKernel.cpp
| A	src/kernel/SpectrumKernel.h
| D	src/kernel/SpektrumKernel.cpp
| D	src/kernel/SpektrumKernel.h
| A	src/lib/suffixarray/BWT.cpp
| A	src/lib/suffixarray/BWT.h
| A	src/lib/suffixarray/BoundedRangeWeight.cpp
| A	src/lib/suffixarray/BoundedRangeWeight.h
| A	src/lib/suffixarray/ChildTable.cpp
| A	src/lib/suffixarray/ChildTable.h
| A	src/lib/suffixarray/ConstantWeight.cpp
| A	src/lib/suffixarray/ConstantWeight.h
| A	src/lib/suffixarray/DataType.h
| A	src/lib/suffixarray/ESA.cpp
| A	src/lib/suffixarray/ESA.h
| A	src/lib/suffixarray/ErrorCode.h
| A	src/lib/suffixarray/ExpDecayWeight.cpp
| A	src/lib/suffixarray/ExpDecayWeight.h
| A	src/lib/suffixarray/I_LCPFactory.h
| A	src/lib/suffixarray/I_SAFactory.h
| A	src/lib/suffixarray/I_WeightFactory.h
| A	src/lib/suffixarray/InductionSort.cpp
| A	src/lib/suffixarray/InductionSort.h
| A	src/lib/suffixarray/IntroSort.h
| A	src/lib/suffixarray/KSpectrumWeight.cpp
| A	src/lib/suffixarray/KSpectrumWeight.h
| A	src/lib/suffixarray/LCP.cpp
| A	src/lib/suffixarray/LCP.h
| A	src/lib/suffixarray/MSufSort.cpp
| A	src/lib/suffixarray/MSufSort.h
| A	src/lib/suffixarray/SConstruct
| A	src/lib/suffixarray/Stack.h
| A	src/lib/suffixarray/W_kasai_lcp.cpp
| A	src/lib/suffixarray/W_kasai_lcp.h
| A	src/lib/suffixarray/W_msufsort.cpp
| A	src/lib/suffixarray/W_msufsort.h
| D	src/lib/suffixarrays/BWT.cpp
| D	src/lib/suffixarrays/BWT.h
| D	src/lib/suffixarrays/BoundedRangeWeight.cpp
| D	src/lib/suffixarrays/BoundedRangeWeight.h
| D	src/lib/suffixarrays/ChildTable.cpp
| D	src/lib/suffixarrays/ChildTable.h
| D	src/lib/suffixarrays/ConstantWeight.cpp
| D	src/lib/suffixarrays/ConstantWeight.h
| D	src/lib/suffixarrays/DataType.h
| D	src/lib/suffixarrays/ESA.cpp
| D	src/lib/suffixarrays/ESA.h
| D	src/lib/suffixarrays/ErrorCode.h
| D	src/lib/suffixarrays/ExpDecayWeight.cpp
| D	src/lib/suffixarrays/ExpDecayWeight.h
| D	src/lib/suffixarrays/I_LCPFactory.h
| D	src/lib/suffixarrays/I_SAFactory.h
| D	src/lib/suffixarrays/I_WeightFactory.h
| D	src/lib/suffixarrays/InductionSort.cpp
| D	src/lib/suffixarrays/InductionSort.h
| D	src/lib/suffixarrays/IntroSort.h
| D	src/lib/suffixarrays/KSpectrumWeight.cpp
| D	src/lib/suffixarrays/KSpectrumWeight.h
| D	src/lib/suffixarrays/LCP.cpp
| D	src/lib/suffixarrays/LCP.h
| D	src/lib/suffixarrays/MSufSort.cpp
| D	src/lib/suffixarrays/MSufSort.h
| D	src/lib/suffixarrays/SConstruct
| D	src/lib/suffixarrays/Stack.h
| D	src/lib/suffixarrays/W_kasai_lcp.cpp
| D	src/lib/suffixarrays/W_kasai_lcp.h
| D	src/lib/suffixarrays/W_msufsort.cpp
| D	src/lib/suffixarrays/W_msufsort.h
|  
* commit 2711a3c7edc28c02867e9d1d22c9d5318532ccde
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 11 08:50:38 2006 +0000
| 
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SparseKernel.h
| D	src/kernel/SparseRealKernel.h
| D	src/kernel/SparseRealKernel.i
| M	src/kernel/SpektrumKernel.cpp
| M	src/kernel/SpektrumKernel.h
| M	src/kernel/StringKernel.h
|  
* commit 6ae3e4c1417adc73efa74937212b69d062c0d151
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Tue Oct 10 17:30:17 2006 +0000
| 
|     modified swig interfaces to work with SVM module
| 
| M	src/classifier/svm/SVM.i
| M	src/classifier/svm/SVM_light.i
| M	src/features/Features.i
| M	src/features/RealFeatures.i
|  
* commit 7267c2e22e40c832ec9c3397eb4966b90f079b00
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Tue Oct 10 16:23:13 2006 +0000
| 
|     modified Classifier and KernelMachine to be modules in order to get the director proxy classes right.
| 
| M	src/classifier/Classifier.i
| M	src/classifier/svm/SVM.i
| M	src/features/ByteFeatures.i
| M	src/features/Features.i
| M	src/features/SimpleFeatures.i
| M	src/kernel/Kernel.i
| M	src/kernel/KernelMachine.i
| M	src/kernel/WeightedDegreeCharKernel.h
|  
* commit 86d998a2f59a3cc49114b8dd3080c0727eaa6514
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 10 15:19:37 2006 +0000
| 
| M	src/.generate_link_dependencies.py
|  
* commit 3b8edacae584acda12bcd7478490096031c287d8
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Tue Oct 10 15:06:16 2006 +0000
| 
|     added swig director support
| 
| M	src/kernel/Kernel.i
|  
* commit 48bef95453ed8065e5461f61c6f0628f5b15f2aa
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Tue Oct 10 14:43:04 2006 +0000
| 
|     modified Features
| 
| M	src/features/Features.i
|  
* commit dc428957a0a0b63fec7db8838b24b179f1988916
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 10 13:58:43 2006 +0000
| 
|     +fixed makefile for swig
| 
| M	src/.generate_link_dependencies.py
| M	src/Makefile
| D	src/features/allFeatures.i
|  
* commit 17ec76c3f7d746c448c2b124dc199ae38b16e521
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Tue Oct 10 13:19:54 2006 +0000
| 
|     modified some interfaces
| 
| M	src/features/Features.i
| M	src/features/__init__.py
| M	src/kernel/CommWordKernel.i
| M	src/kernel/GaussianKernel.i
| M	src/kernel/HistogramWordKernel.i
| M	src/kernel/Kernel.i
| M	src/kernel/PolyMatchCharKernel.i
| M	src/kernel/PolyMatchWordKernel.i
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SparseGaussianKernel.i
| M	src/kernel/SparseKernel.i
| M	src/kernel/SparseRealKernel.i
| M	src/kernel/StringKernel.i
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/kernel/__init__.py
|  
* commit 2e2626626f109fbd5a4771759baf62198c8a5737
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 10 10:38:05 2006 +0000
| 
| M	src/Makefile
|  
* commit 1b2306187255cbb77b5b58f4995be293b2d3fb1c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 10 10:06:46 2006 +0000
| 
|     + refactoring swig... now everything is broken
| 
| M	src/classifier/Classifier.i
| M	src/classifier/KNN.i
| M	src/classifier/KernelPerceptron.i
| M	src/classifier/LDA.i
| M	src/classifier/LPM.i
| M	src/classifier/LinearClassifier.i
| M	src/classifier/Perceptron.i
| M	src/classifier/PluginEstimate.i
| M	src/classifier/svm/LibSVM.i
| M	src/classifier/svm/SVM.i
| M	src/classifier/svm/SVM_light.i
| M	src/distributions/Distribution.i
| M	src/features/Alphabet.i
| M	src/features/ByteFeatures.i
| M	src/features/CharFeatures.i
| M	src/features/CombinedFeatures.i
| M	src/features/FKFeatures.i
| M	src/features/Features.i
| M	src/features/Labels.i
| M	src/features/MindyGramFeatures.i
| M	src/features/RealFeatures.i
| M	src/features/RealFileFeatures.i
| M	src/features/ShortFeatures.i
| M	src/features/SimpleFeatures.i
| M	src/features/SparseFeatures.i
| M	src/features/SparseRealFeatures.i
| M	src/features/StringFeatures.i
| M	src/features/TOPFeatures.i
| M	src/features/WordFeatures.i
| M	src/features/allFeatures.i
| M	src/kernel/AUCKernel.i
| M	src/kernel/CharPolyKernel.i
| M	src/kernel/Chi2Kernel.i
| M	src/kernel/CombinedKernel.i
| M	src/kernel/CommUlongStringKernel.i
| M	src/kernel/CommWordKernel.i
| M	src/kernel/CommWordStringKernel.i
| M	src/kernel/CustomKernel.i
| M	src/kernel/DiagKernel.i
| M	src/kernel/FixedDegreeCharKernel.i
| M	src/kernel/GaussianKernel.i
| M	src/kernel/HistogramWordKernel.i
| M	src/kernel/Kernel.i
| M	src/kernel/KernelMachine.i
| M	src/kernel/LinearByteKernel.i
| M	src/kernel/LinearCharKernel.i
| M	src/kernel/LinearKernel.i
| M	src/kernel/LinearWordKernel.i
| M	src/kernel/LocalityImprovedCharKernel.i
| M	src/kernel/MindyGramKernel.i
| M	src/kernel/PolyKernel.i
| M	src/kernel/PolyMatchCharKernel.i
| M	src/kernel/PolyMatchWordKernel.i
| M	src/kernel/SalzbergWordKernel.i
| M	src/kernel/SigmoidKernel.i
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SimpleLocalityImprovedCharKernel.i
| M	src/kernel/SparseGaussianKernel.i
| M	src/kernel/SparseKernel.i
| M	src/kernel/SparseLinearKernel.i
| M	src/kernel/SparseNormSquaredKernel.i
| M	src/kernel/SparsePolyKernel.i
| M	src/kernel/SparseRealKernel.i
| M	src/kernel/StringKernel.i
| M	src/kernel/WDCharKernel.i
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/kernel/WeightedDegreeCharKernelPolyA.i
| M	src/kernel/WeightedDegreePositionCharKernel.i
| M	src/kernel/WordMatchKernel.i
| M	src/lib/Cache.i
| M	src/lib/DynArray.i
| M	src/lib/File.i
| M	src/lib/List.i
| M	src/lib/Mathmatics.i
| M	src/lib/Parallel.i
| M	src/lib/Signal.i
| M	src/lib/SimpleFile.i
| M	src/lib/Time.i
| M	src/lib/Trie.i
| M	src/lib/Version.i
| M	src/lib/common.i
| M	src/lib/config.i
| M	src/lib/io.i
| M	src/lib/lapack.i
|  
* commit 947502dce0f889f47b7eeb2b6bb695282248d3ce
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 10 09:59:06 2006 +0000
| 
|     spektrum kernel based on SA (not working yet)
| 
| A	src/kernel/SpektrumKernel.cpp
| A	src/kernel/SpektrumKernel.h
|  
* commit 1e858c3a955d4f9d2b4152dc18db6322bacdf041
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 10 09:58:38 2006 +0000
| 
| D	src/lib/suffixarrays/.ltp-sa-nsl.cpp.swp
|  
* commit 887dc526fc4984960116541c08411634869c83c3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 10 09:58:27 2006 +0000
| 
|     +suffix arrays
| 
| A	src/lib/suffixarrays/.ltp-sa-nsl.cpp.swp
| A	src/lib/suffixarrays/BWT.cpp
| A	src/lib/suffixarrays/BWT.h
| A	src/lib/suffixarrays/BoundedRangeWeight.cpp
| A	src/lib/suffixarrays/BoundedRangeWeight.h
| A	src/lib/suffixarrays/ChildTable.cpp
| A	src/lib/suffixarrays/ChildTable.h
| A	src/lib/suffixarrays/ConstantWeight.cpp
| A	src/lib/suffixarrays/ConstantWeight.h
| A	src/lib/suffixarrays/DataType.h
| A	src/lib/suffixarrays/ESA.cpp
| A	src/lib/suffixarrays/ESA.h
| A	src/lib/suffixarrays/ErrorCode.h
| A	src/lib/suffixarrays/ExpDecayWeight.cpp
| A	src/lib/suffixarrays/ExpDecayWeight.h
| A	src/lib/suffixarrays/I_LCPFactory.h
| A	src/lib/suffixarrays/I_SAFactory.h
| A	src/lib/suffixarrays/I_WeightFactory.h
| A	src/lib/suffixarrays/InductionSort.cpp
| A	src/lib/suffixarrays/InductionSort.h
| A	src/lib/suffixarrays/IntroSort.h
| A	src/lib/suffixarrays/KSpectrumWeight.cpp
| A	src/lib/suffixarrays/KSpectrumWeight.h
| A	src/lib/suffixarrays/LCP.cpp
| A	src/lib/suffixarrays/LCP.h
| A	src/lib/suffixarrays/MSufSort.cpp
| A	src/lib/suffixarrays/MSufSort.h
| A	src/lib/suffixarrays/SConstruct
| A	src/lib/suffixarrays/Stack.h
| A	src/lib/suffixarrays/W_kasai_lcp.cpp
| A	src/lib/suffixarrays/W_kasai_lcp.h
| A	src/lib/suffixarrays/W_msufsort.cpp
| A	src/lib/suffixarrays/W_msufsort.h
|  
* commit d7826cdd3b5590962e4fee6c443b3ecf7eab6c54
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 10 09:57:50 2006 +0000
| 
|     +make use of templates wherever possible,
|     	this removes all the {Byte,Char,Word,Real}Kernel* fils
| 
| M	src/ChangeLog
| M	src/README.developer
| M	src/TODO
| M	src/classifier/svm/SVM.i
| M	src/features/CharFeatures.h
| M	src/features/RealFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/WordFeatures.h
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/AUCKernel.h
| D	src/kernel/ByteKernel.h
| D	src/kernel/ByteKernel.i
| M	src/kernel/CanberraWordKernel.cpp
| M	src/kernel/CanberraWordKernel.h
| D	src/kernel/CharKernel.h
| D	src/kernel/CharKernel.i
| M	src/kernel/CharPolyKernel.cpp
| M	src/kernel/CharPolyKernel.h
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordKernel.h
| M	src/kernel/FixedDegreeCharKernel.cpp
| M	src/kernel/FixedDegreeCharKernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/GaussianKernel.i
| M	src/kernel/HammingWordKernel.cpp
| M	src/kernel/HammingWordKernel.h
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/HistogramWordKernel.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearCharKernel.cpp
| M	src/kernel/LinearCharKernel.h
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalityImprovedCharKernel.cpp
| M	src/kernel/LocalityImprovedCharKernel.h
| M	src/kernel/ManhattenWordKernel.cpp
| M	src/kernel/ManhattenWordKernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchCharKernel.cpp
| M	src/kernel/PolyMatchCharKernel.h
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/PolyMatchWordKernel.h
| D	src/kernel/RealKernel.h
| D	src/kernel/RealKernel.i
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.h
| D	src/kernel/ShortKernel.h
| D	src/kernel/ShortKernel.i
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SimpleLocalityImprovedCharKernel.cpp
| M	src/kernel/SimpleLocalityImprovedCharKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/WDCharKernel.cpp
| M	src/kernel/WDCharKernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/kernel/WeightedDegreeCharKernelPolyA.cpp
| M	src/kernel/WeightedDegreeCharKernelPolyA.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.i
| D	src/kernel/WordKernel.h
| D	src/kernel/WordKernel.i
| M	src/kernel/WordMatchKernel.cpp
| M	src/kernel/WordMatchKernel.h
|  
* commit cfe4d07b0135802e98a8ecfd0bb8d25d717a063c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 8 15:11:33 2006 +0000
| 
|     +swig Makefile fixes
| 
| M	src/Makefile
| M	src/features/Alphabet.i
| M	src/features/RealFeatures.i
|  
* commit 0082e2ad1deb5f4ca0cbb1e0122894cca3ffb51b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 7 22:59:51 2006 +0000
| 
|     +really introduce shrinking
|     +make the multiple svms example work again w/ swig
| 
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/guilib/GUISVM.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/GaussianKernel.i
| M	src/kernel/Kernel.h
| M	src/kernel/Kernel.i
| M	src/kernel/RealKernel.h
| M	src/kernel/RealKernel.i
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
|  
* commit f6a9be2521a107efeb857198cb50b285a6348825
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 7 09:30:16 2006 +0000
| 
|     + option to disable shrinking in svm training
| 
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUISVM.cpp
| M	src/guilib/GUISVM.h
| M	src/kernel/Kernel.i
|  
* commit cd654e05b9ebf010c967e96008d35efb43b44d0b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 6 17:38:43 2006 +0000
| 
|     +forgot the alphabet for swig
| 
| A	src/features/Alphabet.i
|  
* commit 5eff2b2d29c21299cb3aac3937b11c27e9af890f
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Fri Oct 6 16:38:32 2006 +0000
| 
|     fixed bugs in mindy conversion routines
| 
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
|  
* commit 03bf2481569df488a459c81f05e4da25567158c1
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Fri Oct 6 16:04:04 2006 +0000
| 
|     templates to support various conversions, e.g. string byte to string ulong or string char to string word, or or or...
| 
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/features/StringFeatures.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
|  
* commit a8788dbbb79f66eeba17e8c67e349dadc535b3e6
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Fri Oct 6 15:02:38 2006 +0000
| 
|     added matlab support byte matrices and cell arrays of bytes
| 
| M	src/guilib/GUIMatlab.cpp
|  
* commit be8c780b57189a230d1ac6e54906f6fb074af675
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 6 14:48:04 2006 +0000
| 
|     +really use alphabet for byte features
|     +freak out w/ swig
| 
| M	src/features/ByteFeatures.cpp
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.i
| M	src/features/RealFeatures.i
| M	src/guilib/GUIFeatures.cpp
| M	src/kernel/Kernel.i
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/lib/Trie.h
| M	src/lib/Trie.i
| M	src/lib/common.i
|  
* commit 605752f8e664084f1b86ba23f6198ceec33f87fc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 6 14:38:58 2006 +0000
| 
|     +byte features now also have an alphabet
| 
| M	src/features/ByteFeatures.cpp
| M	src/features/ByteFeatures.h
|  
* commit 912a2c07985f24e8eb905b114c61d937efdfb223
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 6 09:26:15 2006 +0000
| 
|     +optional zero terminate the strings again as sscanf fails if we don't
| 
| M	octave/examples/spec_kernel.m
| M	octave/examples/wd_kernel.m
| M	octave/examples/wds_kernel.m
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
|  
* commit 3e36298c93372e7e7b5dc61abe6129f87c5a889e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 6 08:58:39 2006 +0000
| 
|     + make getstring function not use mxGetString as it is locale sensitive and
|     might screw up no ascii (0x80-0xff) chars, but do it manually instead. On
|     the way I've done some input sanitizing (no more buffer overflows as we now
|     use strncmp & friends everywhere + no more strlen). this also save 1 byte
|     per string in stringfeatures and has different code for char matrices too
|     (testme!)
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
|  
* commit 860996892462fe2d2823ce19737c2a2fc54f01ab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 5 16:20:45 2006 +0000
| 
|     this should now really fix the 8bit alphabet case
| 
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/StringFeatures.h
| M	src/guilib/GUIMatlab.cpp
|  
* commit 54ad27d16afcc51d244b2320ef10e2e546d747ea
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 5 08:38:39 2006 +0000
| 
|     hopefully fixes spec* kernels for too long strings
| 
| M	src/features/Alphabet.cpp
| M	src/features/StringFeatures.h
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordStringKernel.cpp
|  
* commit 9e268814a51e6c91c5a2e6e74c0c6a93f0b11ee4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 4 12:14:35 2006 +0000
| 
|     gf( -> sg(
| 
| M	matlab/examples/svmlight_hang_test.m
| M	matlab/examples/test_combined2.m
| M	matlab/examples/test_custom_kernel.m
| M	matlab/examples/test_hmm_matlab.m
| M	matlab/examples/test_kernel_optimization.m
| M	matlab/examples/test_linadd.m
| M	matlab/examples/test_matlab_interface.m
| M	matlab/examples/test_mkl.m
| M	matlab/examples/test_mkl_svr_wrapper.m
| M	matlab/examples/test_rbf_kernel.m
| M	matlab/examples/test_regression.m
| M	matlab/examples/test_regression_linadd.m
|  
* commit 96efdf50b01261214bbe344d01221fe9ea100932
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 3 21:21:48 2006 +0000
| 
|     + for very long repetitive strings INT as result might not be enough (overflow)
|     	-> make it a DREAL
| 
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordStringKernel.cpp
|  
* commit 6a2b5dc9cbab0e6a983e51a4833e8629f5fefcef
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Oct 2 20:40:33 2006 +0000
| 
|     Fixed two bugs in the new trie code related to uninitialized variables.
|     Gu
| 
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/lib/Trie.cpp
|  
* commit e1cffa13b5cd8ac0185f125f51b8db3c55c30eb8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 2 13:23:44 2006 +0000
| 
|     move trie to lib (to list & dynarray)
| 
| D	src/kernel/Trie.cpp
| D	src/kernel/Trie.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| A	src/lib/Trie.cpp
| A	src/lib/Trie.h
| A	src/lib/Trie.i
|  
* commit 4b14a3156e97c55c971e6ca6f062ebe4de1fb44d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 2 13:07:58 2006 +0000
| 
|     + really learn to the set accuracy svm_epsilon, works with rbf/ wds+linadd /wds-linadd
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 2250467da028d3d4c08be93bb934a9f9c5a7d2dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 2 10:06:49 2006 +0000
| 
|     fully screw svm light
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 3e35a185d1f978262b13c8a090a542de756791e5
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Sep 29 16:57:38 2006 +0000
| 
| D	src/kernel/WeightedDegreeCharKernel.cpp_orig
| D	src/kernel/WeightedDegreeCharKernel.h_orig
|  
* commit 5fab97d11fe1b754750df15cb205a78bf6e7e478
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Sep 29 16:57:07 2006 +0000
| 
|     Major change in Weighted Degree kernel (experimental):
|     
|     I moved all the trie-related code a separate class CTrie.
|     In principle, nothing should change, but I did not try it..
|     
|     Gu
| 
| M	src/kernel/Trie.cpp
| M	src/kernel/Trie.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp_orig
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreeCharKernel.h_orig
|  
* commit 709ad921ef958e938583c0a1f54037bb1c1ecd83
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Sep 29 16:46:17 2006 +0000
| 
| A	src/kernel/Trie.cpp
| A	src/kernel/Trie.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| A	src/kernel/WeightedDegreeCharKernel.cpp_orig
| M	src/kernel/WeightedDegreeCharKernel.h
| A	src/kernel/WeightedDegreeCharKernel.h_orig
|  
* commit 6f3d4311cd2bb4ee23fe6ebe3a63e8fcc71a0f0e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 29 14:22:31 2006 +0000
| 
|     +workaround for broken powl() (powl is crashing on congo!!!)
| 
| M	src/features/StringFeatures.h
| M	src/lib/Mathmatics.h
|  
* commit 7f5a0a875a5b3367d50d2ac438a26d21f9b8ab5c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 29 14:15:38 2006 +0000
| 
|     +fail on unknown alphabet
| 
| M	src/features/Alphabet.cpp
|  
* commit 2248a7ca609d04ad0e3eb5d7bb2ca2052819558f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 29 12:15:49 2006 +0000
| 
| M	src/configure
|  
* commit 61ab285dc1be9c983cf93517e8ce68d8099b8129
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Sep 24 19:21:03 2006 +0000
| 
|     +this *should* fix the scoring computation function
| 
| M	octave/examples/wds_kernel.m
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
|  
* commit c023b0e6480ed1fe71c0c79db64e4cb63d07f128
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 22 15:12:42 2006 +0000
| 
| A	matlab/examples/test_one_class_svm.m
| M	octave/examples/wds_kernel.m
|  
* commit 87d23fdd5df4acc6f94059d59cc001db8b22eb22
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 22 14:47:15 2006 +0000
| 
|     + LIBSVM_ONECLASS
| 
| A	src/classifier/svm/LibSVM_oneclass.cpp
| A	src/classifier/svm/LibSVM_oneclass.h
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUISVM.cpp
| M	src/guilib/GUISVM.h
| M	src/kernel/Kernel.cpp
| M	src/lib/common.h
|  
* commit acbe952e26d075f162b2ade77d418b2e2706d3bf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 20 19:44:45 2006 +0000
| 
|     +cell array support in octave (strings of different length :)
| 
| M	src/guilib/GUIOctave.cpp
|  
* commit 0bd5d287242c8ba4aa925143aa3ed337a85e5d43
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 20 16:23:07 2006 +0000
| 
|     +configure now checks for math, posix threads, atlas/lapack, readline
|     +compile fixes for R & python, the RAW alphabet type is now RAWBYTE
|     (as it was conflicting with R)
| 
| M	src/classifier/svm/LibSVM.h
| M	src/configure
| M	src/features/Alphabet.cpp
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
| M	src/lib/common.h
|  
* commit 55f1ce311427fadaec2f8bb1b40fc6df99318f30
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 20 15:01:34 2006 +0000
| 
| M	src/configure
|  
* commit 9a6ad82a59494ef67292fe1ca3712dd174300bb0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 20 12:36:10 2006 +0000
| 
| M	src/configure
|  
* commit b928e26764f7480f8293a3fb31a94d94aac83df3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 20 11:45:10 2006 +0000
| 
| M	src/configure
|  
* commit f067a85cbf58ad9ec61e031c1fcec351682db99b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 20 11:42:10 2006 +0000
| 
|     further configure updates / more docu in INSTALL
| 
| D	src/.cpuinfo.c
| M	src/INSTALL
| M	src/configure
|  
* commit 1c9f6db22cda00f0d57e3361ce6ec5dfe8a7e4ed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 20 08:30:12 2006 +0000
| 
|     further configure fixes ...
| 
| M	src/.cpuinfo.c
| M	src/configure
|  
* commit 7ca9733491185d6d84c930d98030e5d381e38c63
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 18 10:42:20 2006 +0000
| 
|     +make install
|     +make -C src install DESTDIR=$(pwd)/debian/
|     +fixed name for binary
| 
| M	src/Makefile
| M	src/configure
|  
* commit 521dc18f0eb96cbc043603d166995d48a51d801f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 18 09:51:55 2006 +0000
| 
|     This *should* fix kernel cache stuff for svmlight:
|     
|     +kernel cache indices are now checked to fit in KERNELCACHE_IDX type
|     	an assertion is thrown if not
|     +kernel cache is reduced to totdoc*totdoc*sizeof(KERNELCACHE_ELEM) if larger
|     +KERNELCACHE_IDX is now LONG again, access operations to the cache buffer do a
|     	cast to KERNELCACHE_IDX, while the cache lines are limited to INTs only
|     	(i.e. caching max ~2^31 cache lines (~2^62 elements) is possible)
| 
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/lib/common.h
|  
* commit c7cacd29301e6882fc14949789338a8e86bcf5b6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 11 09:49:32 2006 +0000
| 
| M	octave/examples/wds_kernel.m
|  
* commit 928e01981775ea1b6ebf8bb3310261592801d677
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 11 09:34:02 2006 +0000
| 
|     make configure work when $INCLUDES / $LIBS are empty
| 
| M	src/configure
|  
* commit 38f81234c036769fd578aaf96e5914983dca32a0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 11 09:27:28 2006 +0000
| 
|     + compile fixes for octave
|     + modify configure to obey INCLUDES/LIBS environment variables as well as
|      --libs --includes options
|     + fix compilation on g++-4.1.2
|     + note the GPL exception in LICENSE (i.e. when compiled with --enable-svm-light binary is under LICENSE.SVMlight)
| 
| M	src/ChangeLog
| M	src/LICENSE
| M	src/configure
| M	src/features/StringFeatures.h
| M	src/guilib/GUIOctave.cpp
| M	src/lib/Mathmatics.h
|  
* commit 6905ef1d326a3b5792ae60c965960f558d41bb45
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 11 09:21:57 2006 +0000
| 
|     + wds example update (to use get_WD_scoring)
| 
| M	matlab/examples/test_svmlight_libsvm.m
| M	octave/examples/wds_kernel.m
|  
* commit 2b1855df87d1dff7c86c8f1b65940fd9075021c5
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Wed Sep 6 10:28:06 2006 +0000
| 
|     extended Mindy support:
|     (a) embedding function: count, frequency, binary
|     (b) similarity measures: see sm.c in mindy distribution
|     (c) parameters for measures: kernel width, minkowski k, etc...
| 
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
|  
* commit f1eb64d22492e44b5bec3727e040543133248d0b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 1 13:06:33 2006 +0000
| 
| M	octave/examples/wd_kernel.m
| M	octave/examples/wds_kernel.m
|  
* commit 5c74487e887a66201288766a1fedb28c2e1ca0b5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 1 00:08:29 2006 +0000
| 
|     + WD und WD-Position kernel scoring functions -> gibt saucoole positionsgewichtungen - nieder mit MKL!
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
|  
* commit f5348337d193918a3034dbae0e87e30d352db13f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 31 21:55:50 2006 +0000
| 
|     +support higher order scoring info
| 
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
|  
* commit 04edab7a7bfda0f8c235a57b0206276eb923c801
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 31 20:56:54 2006 +0000
| 
|     + now alphabets are handled via the CAlphabet class,
|     + stringfeatures now require a alphabet name
|     + fixed sorting function w/ ULONGs (bug might have occured
|     		with datatypes above DREAL)
|     + updated copyright info
| 
| M	src/classifier/Classifier.cpp
| M	src/classifier/Classifier.h
| M	src/classifier/KNN.cpp
| M	src/classifier/KNN.h
| M	src/classifier/KernelPerceptron.cpp
| M	src/classifier/KernelPerceptron.h
| M	src/classifier/LDA.cpp
| M	src/classifier/LDA.h
| M	src/classifier/LPM.cpp
| M	src/classifier/LPM.h
| M	src/classifier/LinearClassifier.cpp
| M	src/classifier/LinearClassifier.h
| M	src/classifier/Perceptron.cpp
| M	src/classifier/Perceptron.h
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/svm/CPLEXSVM.cpp
| M	src/classifier/svm/CPLEXSVM.h
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/GPBTSVM.h
| M	src/classifier/svm/KerthiPrimalSVM.cpp
| M	src/classifier/svm/KerthiPrimalSVM.h
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVM.h
| M	src/classifier/svm/MPD.cpp
| M	src/classifier/svm/MPD.h
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_libsvm.h
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpdtsolve.h
| M	src/classifier/svm/gpm.cpp
| M	src/classifier/svm/gpm.h
| M	src/classifier/svm/pr_loqo.cpp
| M	src/classifier/svm/pr_loqo.h
| M	src/distributions/Distribution.cpp
| M	src/distributions/Distribution.h
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/hmm/GHMM.cpp
| M	src/distributions/hmm/GHMM.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/HMM_bestpath.cpp
| M	src/distributions/hmm/HMM_bestpath_2struct.cpp
| M	src/distributions/hmm/HMM_bestpath_simple.cpp
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/distributions/hmm/LinearHMM.h
| M	src/distributions/hmm/fibheap.cpp
| M	src/distributions/hmm/fibheap.h
| M	src/distributions/hmm/penalty_info.cpp
| M	src/distributions/hmm/penalty_info.h
| A	src/features/Alphabet.cpp
| A	src/features/Alphabet.h
| M	src/features/ByteFeatures.cpp
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.h
| M	src/features/CombinedFeatures.cpp
| M	src/features/CombinedFeatures.h
| M	src/features/FKFeatures.cpp
| M	src/features/FKFeatures.h
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/features/RealFeatures.cpp
| M	src/features/RealFileFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.cpp
| M	src/features/ShortFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/SparseRealFeatures.cpp
| M	src/features/SparseRealFeatures.h
| M	src/features/StringFeatures.cpp
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.cpp
| M	src/features/WordFeatures.cpp
| M	src/features/WordFeatures.h
| M	src/gui/GUI.cpp
| M	src/gui/GUI.h
| M	src/gui/Matlab.cpp
| M	src/gui/Octave.cpp
| M	src/gui/Python.cpp
| M	src/gui/Python.h
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| M	src/gui/TextGUI.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKNN.cpp
| M	src/guilib/GUIKNN.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUILabels.cpp
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIOctave.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIPython.h
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
| M	src/guilib/GUISVM.cpp
| M	src/guilib/GUISVM.h
| M	src/guilib/GUITime.cpp
| M	src/guilib/GUITime.h
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/AUCKernel.h
| M	src/kernel/ByteKernel.h
| M	src/kernel/CanberraWordKernel.cpp
| M	src/kernel/CanberraWordKernel.h
| M	src/kernel/CharKernel.h
| M	src/kernel/CharPolyKernel.cpp
| M	src/kernel/CharPolyKernel.h
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordKernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.cpp
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/DiagKernel.cpp
| M	src/kernel/DiagKernel.h
| M	src/kernel/FixedDegreeCharKernel.cpp
| M	src/kernel/FixedDegreeCharKernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/HammingWordKernel.cpp
| M	src/kernel/HammingWordKernel.h
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/HistogramWordKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/KernelMachine.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearCharKernel.cpp
| M	src/kernel/LinearCharKernel.h
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalityImprovedCharKernel.cpp
| M	src/kernel/LocalityImprovedCharKernel.h
| M	src/kernel/ManhattenWordKernel.cpp
| M	src/kernel/ManhattenWordKernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchCharKernel.cpp
| M	src/kernel/PolyMatchCharKernel.h
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/PolyMatchWordKernel.h
| M	src/kernel/RealKernel.h
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.h
| M	src/kernel/ShortKernel.h
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleLocalityImprovedCharKernel.cpp
| M	src/kernel/SimpleLocalityImprovedCharKernel.h
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparseNormSquaredKernel.cpp
| M	src/kernel/SparseNormSquaredKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/SparseRealKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/WDCharKernel.cpp
| M	src/kernel/WDCharKernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreeCharKernelPolyA.cpp
| M	src/kernel/WeightedDegreeCharKernelPolyA.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WordKernel.h
| M	src/kernel/WordMatchKernel.cpp
| M	src/kernel/WordMatchKernel.h
| M	src/lib/Cache.h
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
| M	src/lib/DynArray.h
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/List.h
| M	src/lib/Mathmatics.cpp
| M	src/lib/Mathmatics.h
| M	src/lib/Parallel.cpp
| M	src/lib/Parallel.h
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.cpp
| M	src/lib/Time.h
| M	src/lib/Version.cpp
| M	src/lib/Version.h
| M	src/lib/common.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/lapack.cpp
| M	src/lib/lapack.h
| M	src/preproc/LogPlusOne.cpp
| M	src/preproc/LogPlusOne.h
| M	src/preproc/NormDerivativeLem3.cpp
| M	src/preproc/NormDerivativeLem3.h
| M	src/preproc/NormOne.cpp
| M	src/preproc/NormOne.h
| M	src/preproc/PCACut.cpp
| M	src/preproc/PCACut.h
| M	src/preproc/PreProc.cpp
| M	src/preproc/PreProc.h
| M	src/preproc/PruneVarSubMean.cpp
| M	src/preproc/PruneVarSubMean.h
| M	src/preproc/RealPreProc.h
| M	src/preproc/ShortPreProc.cpp
| M	src/preproc/ShortPreProc.h
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SortUlongString.cpp
| M	src/preproc/SortUlongString.h
| M	src/preproc/SortWord.cpp
| M	src/preproc/SortWord.h
| M	src/preproc/SortWordString.cpp
| M	src/preproc/SortWordString.h
| M	src/preproc/SparsePreProc.h
| M	src/preproc/StringPreProc.h
| M	src/preproc/WordPreProc.cpp
| M	src/preproc/WordPreProc.h
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/LibSVR.h
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
|  
* commit 8aefccf3b6beb20ca1f6721a5484ebf37b89eea7
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Thu Aug 31 12:42:15 2006 +0000
| 
|     debugging...
| 
| M	src/features/MindyGramFeatures.cpp
| M	src/features/StringFeatures.h
|  
* commit 0d78cd95f499b801c6bc4525bc8c2ec6d3a013b5
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Thu Aug 31 11:51:01 2006 +0000
| 
|     several minor fixes by sonne
| 
| M	src/classifier/LDA.cpp
| M	src/configure
| M	src/features/MindyGramFeatures.cpp
| M	src/features/StringFeatures.h
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
|  
* commit 546968312c0bf58d9629e50865dd5f9bc8250991
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 31 10:13:18 2006 +0000
| 
|     + first try to get a weighted scoring
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.h
|  
* commit f764df99c3bac3a555a75fee0ba688256acd2bce
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 30 21:44:04 2006 +0000
| 
|     +hurray, BYTE/RAW features are now working, however as features are now set using
|     
|     sg('set_features', 'TRAIN', x, 'RAW');
|     
|     the alphabet argument should be obsolete from convert, i.e. instead of
|     	sg('send_command', sprintf('convert TRAIN STRING CHAR STRING ULONG RAW 8 7'));
|     one should use
|     	sg('send_command', sprintf('convert TRAIN STRING CHAR STRING ULONG 8 7'));
|     or keep it as extra check - no ???
| 
| M	src/features/CharFeatures.cpp
| M	src/features/StringFeatures.h
|  
* commit 6fd575bb18854ffebcf76044fe76afd50ea03253
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 30 19:38:22 2006 +0000
| 
|     +LONG is now definitely 64bit
|     +almost all occurances of LONG, long long, long int, long
|     	were converted to INT (as this is enough)
| 
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/Optimizer.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/distributions/hmm/HMM.cpp
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.h
| M	src/features/CombinedFeatures.cpp
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/features/RealFeatures.h
| M	src/features/ShortFeatures.cpp
| M	src/features/ShortFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseRealFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/WordFeatures.cpp
| M	src/features/WordFeatures.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/SimpleFile.h
| M	src/lib/common.h
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
|  
* commit 7a99209508f913d779bc2404ef96369a71121688
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Wed Aug 30 18:28:07 2006 +0000
| 
|     fixed changes in mindy interface
| 
| M	src/kernel/MindyGramKernel.cpp
|  
* commit e3171f14455e3eb01457ba5bb16a5cb616d9e1f5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 30 17:47:33 2006 +0000
| 
|     - undo CHAR -> signed char change, as then CHAR* bla = "dfadf" is a nogo on x86
|     - hopefully fix histogram creation (and thus RAW BYTE features) by converting signed -> unsigned
| 
| M	src/features/StringFeatures.h
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/common.h
| M	src/lib/io.h
|  
* commit 354cf09d26d7dbf5a69b5015c9a5095308252fc2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 30 17:03:50 2006 +0000
| 
|     +make CHAR case sensitive and remap function return BYTE (unsigned!!!)
| 
| M	src/features/CharFeatures.h
| M	src/lib/common.h
|  
* commit 0198ce94f8c38c4354a7732d0a4ff9d0e8246472
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Wed Aug 30 13:04:12 2006 +0000
| 
|     fixed commstring{word|ulong}kernel bugs
| 
| M	src/features/StringFeatures.h
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommWordStringKernel.cpp
| M	src/lib/common.h
|  
* commit 9671ac96a0b55889bcd14f7e0028f1006fe28dc2
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Wed Aug 30 09:10:33 2006 +0000
| 
|     fixed minor bugs in mindy code and did code beautification
| 
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
|  
* commit f95d1204efced60badb0626750059350e15c181e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 30 08:26:52 2006 +0000
| 
|     relabel BYTE -> RAW (due to name clash with featue type..)
| 
| M	src/features/CharFeatures.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIR.cpp
| M	src/lib/common.h
|  
* commit eb9bb8264c8444876305f4646b1b867b9fda1446
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 30 07:00:12 2006 +0000
| 
|     +support for non DNA (BYTE,PROTEIN,...) alphabet
| 
| M	src/features/CharFeatures.cpp
| M	src/gui/Octave.cpp
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIPython.h
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
| M	src/lib/common.h
|  
* commit 0cdf0e70a796b2acf348a1dc6d4b43d39b9b888d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 29 16:35:01 2006 +0000
| 
|     +ifdef mindy
| 
| M	src/features/StringFeatures.h
| M	src/guilib/GUIKernel.cpp
|  
* commit ffaf11059a4e5476b4e924e754b3ce43def35f4d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 29 15:59:28 2006 +0000
| 
|     +comm word kernel obeys normalization options
| 
| M	src/TODO
| M	src/guilib/GUIKernel.cpp
|  
* commit 428ca165a0d85851d84d2eefe90b0c6ab48c3432
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Tue Aug 29 15:55:44 2006 +0000
| 
|     rudimentary interface (features/kernel) to mindy library
| 
| D	src/features/GramFeatures.cpp
| D	src/features/GramFeatures.h
| D	src/features/GramFeatures.i
| A	src/features/MindyGramFeatures.cpp
| A	src/features/MindyGramFeatures.h
| A	src/features/MindyGramFeatures.i
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIKernel.cpp
| A	src/kernel/MindyGramKernel.cpp
| A	src/kernel/MindyGramKernel.h
| A	src/kernel/MindyGramKernel.i
| M	src/lib/common.h
|  
* commit 6f3e00f5ef0303ede4f1c3433ebc657545f7a896
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 25 14:11:34 2006 +0000
| 
|     +konrads mindy lib based n-gram / bag-of-words features (kernel to follow...)
| 
| A	src/features/GramFeatures.cpp
| A	src/features/GramFeatures.h
| A	src/features/GramFeatures.i
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/lib/common.h
|  
* commit cb6d8da3f4818010c17d48265dd31cc637697859
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 9 12:23:14 2006 +0000
| 
|     +new experimental configure (should work on macbook pro's)
| 
| M	src/configure
|  
* commit bca9e6af254468e98a1e1b6e466c132d6e9d8a44
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 6 13:10:12 2006 +0000
| 
|     + spectrum/wd/wds kernel octave/matlab examples
| 
| M	R/sg/inst/doc/sg.pdf
| A	octave/examples/spec_kernel.m
| A	octave/examples/wd_kernel.m
| A	octave/examples/wds_kernel.m
|  
* commit 8db83608d3874bff9da26b42ad08d27e4ac3cb05
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Jul 14 15:16:29 2006 +0000
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 96152baff99ec8582c14f1c34a3056bf16f9bfe2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jul 1 13:46:02 2006 +0000
| 
|     +compile fix for matlab+osx
| 
| M	src/configure
|  
* commit dc6a351d82e641971a7617110654cc257a926cba
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 30 22:44:43 2006 +0000
| 
| M	R/sg/DESCRIPTION
|  
* commit eb1062991285674a2e6f268cfb0e98f33d5cd5f2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 30 22:16:17 2006 +0000
| 
|     +require only R 2.1
| 
| M	R/sg/DESCRIPTION
|  
* commit 09bc245a38b5c9a9f9e5a3b9c8ace1f4d8d30918
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 30 22:00:08 2006 +0000
| 
| M	R/Makefile
|  
* commit ccfa070cf4ebe37836c84b236801287974561277
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 30 21:55:22 2006 +0000
| 
| M	R/Makefile
|  
* commit a10295949f9371beb331c1856aefb642568a36ff
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 30 21:48:41 2006 +0000
| 
|     +R install fix
|     +svm light warning
| 
| M	R/Makefile
|  
* commit ce9c2f4cee0858c0853a5bb555bec7f97f0c41a7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 30 14:29:41 2006 +0000
| 
| M	Makefile
|  
* commit 8c5d98cc5746dbbfda33c25be5a47f6ce747915f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 30 14:26:30 2006 +0000
| 
| M	src/ChangeLog
|  
* commit 362328aa8f365ece3ad1cd2e3671ef2af94cb402
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 30 08:52:59 2006 +0000
| 
|     + example on how to compute entropy / relative entropy with 'linear hmms == markov chains'
| 
| A	matlab/examples/entropy.m
|  
* commit ec911dd96318406b9b858e5554794958be409a61
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 29 22:15:19 2006 +0000
| 
|     the wd kernel test example
| 
| A	matlab/examples/test_wd_kernel.m
|  
* commit a346cab65a9369e51e3afcc296aaaf76b33c2eed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 29 22:14:14 2006 +0000
| 
|     +fix entropy function
|     +use SLOWBUTMEMEFFICIENT in reactivate_inactive_examples
|     +fix: use normalization when requested w/ WDPosition kernel
|     +fix: shift of length 0 resulted in unitialized vec array (WDPosition kernel)
|     +tons of fixes in WD kernel:
|      1. linadd should work again
|      2. batch computation implemented and works
|      3. mkl does at least not crash and leads to same objective value (but output on test set is different)
|      4. used remap() function w/ alphabet from character features (should speed up a lot)
|      5. removed has_floats from Trie structure (saves some mem)
|     
|     however WD+mismatch functions seem to not work, MKL w/ WD shift kernel might work but need example!
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit cccb699aa4c5fe2d1b0c0d7515fbac32510e80e1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 29 08:11:22 2006 +0000
| 
| M	src/kernel/WeightedDegreeCharKernel.cpp
|  
* commit e73f7d136ef490bbcb704f1292dd98520ca763ca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 28 23:40:24 2006 +0000
| 
|     good news: this kernel is now really really working (except for maybe MKL -
|     		i.e. someone needs to test it w/ MKL!), however it works with NON CONSTANT
|     	SHIFTS, with and w/o batch computation, with FASTBUTMEMHUNGRY/SLOWBUTMEMEFFICIENT
|     	the added (advanced!) example shows the usage. note: batch computation is emulated
|     	when the combined kernel is used (by using linadd/ if that is not available linadd
|     			is emulated)
| 
| M	matlab/examples/test_wdshift_kernel.m
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 2347d71a839fecb6b5dbd4beb05b0ae7f49abccf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 28 21:27:21 2006 +0000
| 
|     +LONGDREAL -> LONGREAL
|     +call delete_optimization after svm training, this fixes the
|     	'zero output on when init_kernel_optimization is forgotten' issue
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearCharKernel.cpp
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/WordMatchKernel.cpp
| M	src/lib/common.h
|  
* commit 2a62f1f5740d6881902b696ab234bd47f09a3079
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 26 23:12:17 2006 +0000
| 
| D	python/examples/multi_svm.py
| A	python/examples/multiple_svms_matplotlib.py
|  
* commit a52560720e43e21e3fc35a49371e0399bd180502
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Jun 26 18:20:56 2006 +0000
| 
|     renamed file
| 
| D	python/examples/mit_bunt_und_so.py
| A	python/examples/multi_svm.py
|  
* commit a9306d497ecc03d67d7a2019be32b8951a77b9f0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 26 18:17:14 2006 +0000
| 
|     - mpisvm
|     + lots of documentation ...
| 
| M	doc/Makefile
| A	doc/manual/Makefile
| A	doc/manual/R.txt
| A	doc/manual/cmdline.txt
| A	doc/manual/commands.txt
| A	doc/manual/faq.txt
| A	doc/manual/installation.txt
| A	doc/manual/interfaces.txt
| A	doc/manual/introduction.txt
| A	doc/manual/license.txt
| D	doc/manual/manual.txt
| A	doc/manual/matlab.txt
| A	doc/manual/octave.txt
| A	doc/manual/overview.txt
| A	doc/manual/python.txt
| M	src/configure
|  
* commit 97a41c693313021d9b387baff20139203d6f962f
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Jun 26 17:55:36 2006 +0000
| 
|     script is working
| 
| M	python/examples/mit_bunt_und_so.py
|  
* commit 2a2dac399f042b18ff5d8ee9b47b598dfadb7e82
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Jun 26 14:43:57 2006 +0000
| 
|     +swig svm
| 
| M	Makefile
| M	R/Makefile
| M	R/sg/DESCRIPTION
| M	python/examples/mit_bunt_und_so.py
|  
* commit 03e3564aef073c8b6c090a2ad29f8e585135d932
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Jun 26 14:16:47 2006 +0000
| 
|     corrected some stuff
| 
| M	python/examples/mit_bunt_und_so.py
|  
* commit 23c1fc57d86e58935dfe7838e8570b5120a09888
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Jun 25 19:58:42 2006 +0000
| 
|     experimental code for protein sequences ...
|     G
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 8e16eb40eb59c0254824165fee32f2de52e87320
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 25 14:12:18 2006 +0000
| 
|     + compile fix for cygwin W32 arch
| 
| M	src/lib/Mathmatics.cpp
|  
* commit 7c84ddd319488c188c5e79b02ee44da972c7412c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 16:28:05 2006 +0000
| 
| A	Makefile
| M	doc/Makefile
|  
* commit 4bb981f67355441bdd052007de9498a7c942a8b6
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 23 16:04:44 2006 +0000
| 
|     added example
| 
| A	python/examples/mit_bunt_und_so.py
|  
* commit bae360d3e35535dab92210b1576e6f9ef48c1107
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 15:16:36 2006 +0000
| 
| M	python/examples/multiple_svms.py
|  
* commit dcf5ef4b4ffe8b0b58adc82647d3e273b3b4ec45
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 15:10:46 2006 +0000
| 
| M	python/examples/multiple_svms.py
|  
* commit ca92b21a54d7ffce3b8c8dfacdaa970fab4109f0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 15:04:19 2006 +0000
| 
| M	python/examples/multiple_svms.py
|  
* commit 5a54a793d65626f21c226ab8cb338907ba25bd4f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 14:58:55 2006 +0000
| 
|     +wd kernel
| 
| M	python/examples/multiple_svms.py
| A	python/examples/wd_kernel.py
|  
* commit a1c75548daa18a00d22ddb4c5afceb47f1df924f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 14:55:07 2006 +0000
| 
| M	src/kernel/GaussianKernel.i
| M	src/kernel/RealKernel.i
| M	src/kernel/SimpleKernel.i
|  
* commit 29153c2a1dd11460980b3517f5de0059f7ae672f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 14:38:17 2006 +0000
| 
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
|  
* commit b81bed48fd092872d03ddcf6ebba178730c612b5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 14:28:40 2006 +0000
| 
| M	src/classifier/svm/LibSVM.i
| M	src/classifier/svm/SVM_light.i
|  
* commit 5442abcdbd6dbe8285a8c3f0ffdde6433b47ee29
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 14:26:15 2006 +0000
| 
| M	src/features/RealFeatures.i
|  
* commit 0723cc798c643fb660af0e8acd6c6354c37c90b8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 14:22:14 2006 +0000
| 
|     just cleanups
| 
| M	src/features/CharFeatures.i
| M	src/features/RealFeatures.i
| M	src/features/SimpleFeatures.i
| M	src/lib/common.i
|  
* commit 9b8ad6c0196b3c378aee5a6d3ef25c3a9e4a0b3c
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 23 14:15:28 2006 +0000
| 
|     changed include order
| 
| M	src/features/RealFeatures.h
|  
* commit c4462c77910a533129b13eb744830d3d7c84cb10
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 23 14:12:59 2006 +0000
| 
|     modified
| 
| M	src/kernel/GaussianKernel.i
|  
* commit 84eff75f2bee3b854e03afb7cf23d476b795ac1e
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 23 14:12:28 2006 +0000
| 
|     i
| 
| M	src/features/RealFeatures.i
|  
* commit 11c01fbb2f8cb3ce7a53f26a46a1691e334921fb
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 23 14:10:25 2006 +0000
| 
|     added new submodule
| 
| M	src/features/__init__.py
|  
* commit becddb2257b9883ba8c53768af0b274edd4f1c50
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 23 14:05:54 2006 +0000
| 
|     modified RealFeatures
| 
| M	python/examples/multiple_svms.py
|  
* commit 39d7fc616a7204bf52db847c2cc5e2761d5d5aeb
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 23 13:55:34 2006 +0000
| 
|     added %template directive to solve the issublcass(RealFatures,SimpleFeatures) problem
| 
| M	src/features/SimpleFeatures.i
|  
* commit fe77eb619d793c29d537b4290b9ffe720ca3a04c
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 23 13:39:43 2006 +0000
| 
|     combined interface file for Features, SimpleFeatures and RealFeatures.
| 
| A	src/features/allFeatures.i
|  
* commit fa92b44d06ce7d2f5b3f5a0f0b25257ad247651c
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 23 12:20:06 2006 +0000
| 
|     added example
| 
| M	python/examples/fabio_test.py
| A	python/examples/multiple_svms.py
|  
* commit 82c2503e67498e14bc92ff74beeff9c245fffd5d
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 23 12:19:57 2006 +0000
| 
|     added GaussianKernel interface
| 
| M	src/features/Features.i
| M	src/features/RealFeatures.i
| M	src/features/__init__.py
| M	src/kernel/GaussianKernel.i
| M	src/kernel/__init__.py
|  
* commit 98065dd579afdb1dba2ce64910f031cffb213157
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 23 10:22:30 2006 +0000
| 
|     new constructor added
| 
| M	src/features/RealFeatures.i
|  
* commit 54977c060a2521f73d90715d184eacf23a37d9fe
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 10:20:29 2006 +0000
| 
| M	src/features/RealFeatures.h
|  
* commit 6ae075c6cc3a5b3365c575faac9e80e6065b594e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 10:16:57 2006 +0000
| 
|     + realfeatures
| 
| M	src/features/RealFeatures.h
|  
* commit af3b9744f80964bb07195701514d98605b9ed64e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 22 14:15:51 2006 +0000
| 
| M	src/lib/common.i
|  
* commit 6ed154f826f11c66c79c20405c9e8c79b847c9e7
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Jun 22 13:17:50 2006 +0000
| 
|     added include common.i
| 
| M	src/features/CharFeatures.i
|  
* commit e7123b27007c06d4826a6781cf7c23aab7efc506
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Jun 22 13:00:50 2006 +0000
| 
|     added module init
| 
| A	src/lib/__init__.py
|  
* commit ff92b82f0f86447933d8b85c39b075c863d422ae
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Jun 22 12:53:41 2006 +0000
| 
|     added some stuff
| 
| M	src/features/CharFeatures.i
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/lib/common.i
|  
* commit 23ecfd574c314096fb64b8a46df2999932df7ab3
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Jun 22 09:37:34 2006 +0000
| 
|     modified common interface
| 
| M	src/lib/common.i
|  
* commit cfca0278c6f9e2b45ea0e401459ccf8542d97a00
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Jun 22 09:11:09 2006 +0000
| 
|     removed swigfiles dir
| 
| M	src/classifier/svm/SVM_light.i
| M	src/lib/common.i
| D	src/swigfiles/common.i
|  
* commit 340283f4a4de2169ad70680a3d4710db2f6cc946
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 21 17:16:47 2006 +0000
| 
|     now on the web :)
| 
| M	octave/examples/hmm.m
|  
* commit 44ed13fce633c850d8a6a51f6fc825f08316875c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 21 17:00:44 2006 +0000
| 
|     +hmm example working in octave / several hmm fixes + svm_classify_example ...
| 
| A	octave/examples/hmm.m
| M	src/gui/Octave.cpp
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIOctave.h
| M	src/kernel/CommWordStringKernel.h
| M	src/lib/Mathmatics.h
|  
* commit 33d3b243df19a7d2bfe2e7d8630bffdf2f6962b1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 21 16:05:28 2006 +0000
| 
|     + fixed hmm w/ matlab
|     + nice hmm matlab example
| 
| A	matlab/examples/hmm.m
| M	src/distributions/hmm/HMM.cpp
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
|  
* commit 7fb481720dad9641b9883c4d84834be09df62157
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Wed Jun 21 14:44:04 2006 +0000
| 
|     fixed even some more lib/common.i issues
| 
| M	src/features/Labels.i
| M	src/features/SimpleFeatures.i
| M	src/kernel/CharKernel.i
| M	src/kernel/SimpleKernel.i
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/kernel/WeightedDegreePositionCharKernel.i
|  
* commit bac04e7b0ecff6a543d9065295a40b32ef8fa61c
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Wed Jun 21 14:42:08 2006 +0000
| 
|     fixed some include paths
| 
| M	src/classifier/svm/SVM.i
| M	src/classifier/svm/SVM_light.i
| M	src/features/CharFeatures.i
| M	src/features/Features.i
| M	src/kernel/Kernel.i
| M	src/lib/common.i
|  
* commit ce90bc0fa97feeaad2180a051e7aa108ccf0ea3c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 21 11:02:11 2006 +0000
| 
|     +octave set/get_features fixes
|     +examples for svm/svr w/ octave
| 
| M	octave/examples/svm_classification.m
| M	src/configure
| M	src/guilib/GUIOctave.cpp
|  
* commit 0830f4b32410eb4a24dccea08ea39da58c614997
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 21 07:26:44 2006 +0000
| 
|     + waiting for octave...
| 
| A	octave/examples/svm_classification.m
| A	octave/examples/svr_regression.m
|  
* commit 13d74d59e62f90172ce650049e461fd3ed83f95f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 21 06:59:55 2006 +0000
| 
|     + matlab examples
|     + update doxygen generator file
| 
| M	R/Makefile
| D	R/examples/classification.R
| D	R/examples/regression.R
| A	R/examples/svm_classification.R
| A	R/examples/svr_regression.R
| M	doc/doxygen/Doxyfile
| A	matlab/examples/svm_classification.m
| A	matlab/examples/svr_regression.m
| M	matlab/examples/test_classifier.m
|  
* commit cb3f05eb2b94344151e4d4b3181aa400c6bc1f6d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 21 05:21:53 2006 +0000
| 
|     c -> cpp
| 
| D	src/lib/lapack.c
| A	src/lib/lapack.cpp
|  
* commit 707a107a6c61162419cf39ad3a930908d5c0eec2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 20 21:28:24 2006 +0000
| 
|     + use extern "C" for lapack functions
|     + simplified python svm/svr examples -> now on webpage
| 
| A	python/examples/svm_classificaton.py
| A	python/examples/svr_regression.py
| D	python/examples/test_mpdsvm.py
| D	python/examples/test_python.py
| M	src/lib/lapack.c
| M	src/lib/lapack.h
| M	src/preproc/PCACut.cpp
|  
* commit f51cec41dc212d99446e525f16b0cde64831cda9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 20 18:05:49 2006 +0000
| 
|     + fix c++ compiler detection on macs
|     + various workarounds for blas/lapack on macosx ... it does not work :/
|     - disable lapack on macs and print a warning
| 
| M	src/classifier/svm/pr_loqo.cpp
| M	src/configure
| M	src/lib/Mathmatics.cpp
| M	src/lib/Mathmatics.h
| M	src/lib/io.h
| M	src/lib/lapack.c
| M	src/lib/lapack.h
| M	src/preproc/PCACut.cpp
|  
* commit 6d94efdd84722b713ee5e2b6a228508ce9024ab5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 19 18:35:16 2006 +0000
| 
|     +further lapack osx compilation fixes
| 
| M	src/lib/Mathmatics.cpp
| M	src/lib/lapack.h
| M	src/preproc/PCACut.cpp
|  
* commit 5ec335a968ad401c3266c139c869fd0f954a3b0c
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Jun 19 16:02:38 2006 +0000
| 
|     modified example
| 
| M	python/examples/fabio_test.py
|  
* commit 4a394a75a4ebf2d11ddc4235530766217bd9aa5c
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Jun 19 15:26:30 2006 +0000
| 
|     modified example
| 
| M	python/examples/fabio_test.py
| A	python/examples/fileA.dna
| A	python/examples/fileB.dna
|  
* commit a233eb43a1ddbaec3667027e661301c3c67ca998
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Jun 19 15:20:34 2006 +0000
| 
|     centralized swig helper datastructures in common.i
| 
| M	src/kernel/Kernel.i
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/kernel/WeightedDegreePositionCharKernel.i
| M	src/lib/common.i
|  
* commit 262a2563b64e42f126de8850bd3050b6fcf4bee8
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Jun 19 15:03:19 2006 +0000
| 
|     cpointer added to none dependend files
| 
| M	src/.generate_link_dependencies.py
|  
* commit a74a97ea2f17cfa5c22061faa1288fd6a3624c75
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 19 13:03:46 2006 +0000
| 
|     + allow compiling w/ lapack/blas on osx
|     + workaround clapack_dpotrf not beeing defined (needs check!!)
| 
| M	src/Makefile
| M	src/classifier/LDA.cpp
| M	src/configure
| M	src/lib/Mathmatics.cpp
| M	src/lib/Mathmatics.h
|  
* commit 8ea890eb48199781d164d9b6a2c92902310f2a15
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 18 09:13:53 2006 +0000
| 
| D	src/d-bug.py
|  
* commit 6ad121c884a7791c72b7d88af2b17d7f20e0cd6f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 18 09:02:29 2006 +0000
| 
|     +forgotten necessary files
| 
| A	src/classifier/svm/gpdtsolve.h
| A	src/classifier/svm/gpm.h
|  
* commit 4024dbb051ee8f1a883627dc3fd1abd5cd5085d6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 18 09:01:36 2006 +0000
| 
|     using swig one can now train a svm like this:
|     
|     import kernel.WeightedDegreeCharKernel as wd
|     import features.CharFeatures as cf
|     import features.Labels as lab
|     import classifier.svm.SVM_light as svm
|     
|     dA = wd.doubleArray(5)
|     dA[0] = 0.167
|     dA[1] = 0.25
|     dA[2] = 0.5
|     dA[3] = 0.25
|     dA[4] = 0.167
|     f=cf.CCharFeatures(cf.DNA,'ACGTAAACCGGT',4,3)
|     kernel = wd.CWeightedDegreeCharKernel(f,f,10,dA,2,0,True,False,1)
|     
|     trainlabels = lab.CLabels(3)
|     trainlabels.set_int_label(0,1)
|     trainlabels.set_int_label(1,-1)
|     trainlabels.set_int_label(2,-1)
|     
|     s = svm.CSVMLight()
|     s.set_labels(trainlabels)
|     s.set_kernel(kernel)
|     result = s.train();
|     print result
| 
| M	src/Makefile
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/configure
| M	src/distributions/Distribution.h
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.h
| M	src/features/CharFeatures.i
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/Kernel.i
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreeCharKernel.i
| D	src/lib/versionstring.i
|  
* commit 95d5b826bdc05c9abebfd8152697c64c5530f316
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 16 16:48:18 2006 +0000
| 
|     updated a few interfaces
| 
| M	src/classifier/svm/SVM.i
| M	src/kernel/Kernel.i
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/kernel/WeightedDegreePositionCharKernel.i
|  
* commit 6e1e7db2de72a5d6c7f852427394e322bdb907b2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 16:39:31 2006 +0000
| 
|     +make swigclean
| 
| M	src/Makefile
|  
* commit b5d92824578b1edf90988c93e8b57914f5b03fb7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 16:22:07 2006 +0000
| 
|     yet another python build fix
| 
| M	src/configure
|  
* commit e480afe90e26af49c2a5a237b7397bc8fb846adc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 16:07:27 2006 +0000
| 
| M	src/configure
|  
* commit 0ac9055b268fd0e8bfa0f8ecd1e79d1fc418c028
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 15:58:58 2006 +0000
| 
|     +fix linking in python interface, disable svm light msg for now
| 
| M	src/configure
|  
* commit d134768269c2d07825bb5d2764be35a405897002
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 15:18:40 2006 +0000
| 
|     +check entries in .svn/ and always update versionstring if a newer entry file exist
| 
| M	src/Makefile
|  
* commit 38aa4bb95a391cc35798277dfb70f1550b2887e3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 14:27:09 2006 +0000
| 
|     - make doc
| 
| M	src/Makefile
|  
* commit e52da86319cffb42bf3d3e00167e7f1e2b9bf0b4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 14:10:45 2006 +0000
| 
|     +make manual
| 
| A	doc/Makefile
|  
* commit ec16325bff2505215c8b54736034ec69f9da6e46
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 14:09:52 2006 +0000
| 
| A	doc/manual/manual.txt
| D	doc/user_manual/manual.txt
|  
* commit f40de6c1d8995bf3af371446cf7cca126868ae58
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 13:16:21 2006 +0000
| 
| M	R/Makefile
|  
* commit 221dbb1c2655299c196edb1e57be45cd23b3511a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 12:27:54 2006 +0000
| 
|     +updated the example to the one used in the talk
|     +now R sources should really install
| 
| M	R/Makefile
| M	R/configure
| M	R/examples/hmm.R
| M	R/sg/inst/doc/sg.pdf
| M	src/Makefile
| M	src/configure
|  
* commit 8d425efb1954297faadf5ee1819473109353ab40
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 08:51:20 2006 +0000
| 
|     -ccache
| 
| M	R/examples/classification.R
| M	R/examples/hmm.R
| M	R/sg/inst/doc/sg.pdf
| M	src/configure
|  
* commit 72030c4c4c335aea5d3fff7c94458ba88c90e796
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 16 08:40:18 2006 +0000
| 
|     added "cp TODO LICENSE..."
| 
| M	R/Makefile
|  
* commit 8f4dc91ede2dd2c4c6e02f07f4fdb69744f60ca5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 08:36:12 2006 +0000
| 
| M	R/sg/inst/doc/sg.pdf
| D	R/sg/tests/test.R
|  
* commit df73dc1a381da2eec22a018133bb05be781c8d01
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 08:22:02 2006 +0000
| 
| A	R/sg/inst/doc/manual.pdf
| A	R/sg/inst/doc/sg.Rnw
| A	R/sg/inst/doc/sg.pdf
|  
* commit 1a44d6e54b79ab2301bfd46bbd363f90e2d2eaf2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 08:17:30 2006 +0000
| 
| A	R/sg/demo/00Index
| A	R/sg/tests/startup.R
|  
* commit 84b7157b1302e8f8d90855366a58cf94e63f3cce
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 16 08:13:03 2006 +0000
| 
|     removed gcc --dumpversion
| 
| M	src/Makefile
|  
* commit 79e495e8b6968f032a87952d3320c0c4fa6c9b52
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 07:49:23 2006 +0000
| 
|     - obsolete files in R 2.3
| 
| D	R/sg/INDEX
| D	R/sg/cleanup
|  
* commit 529e787fc0fab41114709b72a1f9ce075450bcfb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 07:48:31 2006 +0000
| 
|     + R vignette
|     + configure option --disable-svm-light
|     + print out warning when confiuring w/ svmlight
| 
| M	R/Makefile
| M	R/README.txt
| M	R/examples/hmm.R
| M	R/sg/DESCRIPTION
| D	R/sg/R_PROFILE.R
| D	R/sg/demo/Rtest.R
| M	R/sg/demo/string_kernel.R
| D	R/sg/demo/test.R
| D	R/sg/demo/test_hmm.R
| D	R/sg/demo/test_hmm_DNA.R
| D	R/sg/install.R
| M	doc/user_manual/manual.txt
| M	src/README
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/configure
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
| M	src/guilib/GUISVM.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/WDCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernelPolyA.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
|  
* commit 45ad75fd062e955e00275414676a5f5a76e806b7
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Jun 15 15:59:28 2006 +0000
| 
|     extended doc
| 
| M	doc/user_manual/manual.txt
|  
* commit cb8b810d1ec27db895fcc3487aa593be1bae2a5a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 15 15:55:45 2006 +0000
| 
|     + documented contributions form joachims, chen lin, smola  etc
|     + create math object to get its constructor called (this screwed
|     		up the HMM since oct-2004) -> HMM training is now working again
|     + get_viterbi_path and other functions for HMM
|     + a running HMM example
| 
| M	R/examples/hmm.R
| M	src/CONTRIBUTIONS
| A	src/ChangeLog
| D	src/HISTORY
| A	src/LICENSE.SVMlight
| M	src/gui/R.cpp
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
| M	src/lib/Mathmatics.cpp
|  
* commit af33ab6cec70b7731de92cf6fbfbf3de01cfc2a3
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Jun 15 15:23:21 2006 +0000
| 
|     update manual
| 
| M	doc/user_manual/manual.txt
|  
* commit 10a4251652a6b521c297fd4ad64ff9116b7d4fd7
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Jun 15 14:38:40 2006 +0000
| 
|     added more text
| 
| M	doc/user_manual/manual.txt
|  
* commit 7afd3127bbcdd24f09669dcd8fa3ed44cef8451b
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Jun 15 11:04:20 2006 +0000
| 
|     first version of the user manual.
| 
| A	doc/user_manual/manual.txt
|  
* commit d83659b316d5f16acf1cbfffdc81428ece770a97
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Jun 15 09:59:54 2006 +0000
| 
|     removed r-project address
| 
| M	R/sg/DESCRIPTION
|  
* commit 39b23d1545ff232416cc8c68ce645f91ffd9ff4c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 15 09:17:54 2006 +0000
| 
|     +a more useful general README, README.developer, LICENSE+INSTALL information
|     +hmm example
|     +make best_path work again
|     +stringfeatures if order == 1 keep number of symbols
|     +some more checks in GUIR
|     +license information as a header to each file
|     +update version information from svn, now sg('get_version') returns svn revision (not time in minutes since 197x)
|     -empty svm directory
| 
| A	R/examples/hmm.R
| M	R/sg/COPYING
| M	R/sg/DESCRIPTION
| M	R/sg/INDEX
| M	src/.version.sh
| A	src/AUTHORS
| A	src/CONTRIBUTIONS
| A	src/INSTALL
| M	src/README
| A	src/README.developer
| M	src/classifier/Classifier.cpp
| M	src/classifier/Classifier.h
| M	src/classifier/KNN.cpp
| M	src/classifier/KNN.h
| M	src/classifier/KernelPerceptron.cpp
| M	src/classifier/KernelPerceptron.h
| M	src/classifier/LDA.cpp
| M	src/classifier/LDA.h
| M	src/classifier/LPM.cpp
| M	src/classifier/LPM.h
| M	src/classifier/LinearClassifier.cpp
| M	src/classifier/LinearClassifier.h
| M	src/classifier/Perceptron.cpp
| M	src/classifier/Perceptron.h
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/svm/CPLEXSVM.cpp
| M	src/classifier/svm/CPLEXSVM.h
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/GPBTSVM.h
| M	src/classifier/svm/KerthiPrimalSVM.cpp
| M	src/classifier/svm/KerthiPrimalSVM.h
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVM.h
| M	src/classifier/svm/MPD.cpp
| M	src/classifier/svm/MPD.h
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/Optimizer.h
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_libsvm.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpm.cpp
| M	src/classifier/svm/pr_loqo.cpp
| M	src/classifier/svm/pr_loqo.h
| M	src/distributions/Distribution.cpp
| M	src/distributions/Distribution.h
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/hmm/GHMM.cpp
| M	src/distributions/hmm/GHMM.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/HMM_bestpath.cpp
| M	src/distributions/hmm/HMM_bestpath_2struct.cpp
| M	src/distributions/hmm/HMM_bestpath_simple.cpp
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/distributions/hmm/LinearHMM.h
| M	src/distributions/hmm/fibheap.cpp
| M	src/distributions/hmm/fibheap.h
| M	src/distributions/hmm/penalty_info.cpp
| M	src/distributions/hmm/penalty_info.h
| M	src/features/ByteFeatures.cpp
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.h
| M	src/features/CombinedFeatures.cpp
| M	src/features/CombinedFeatures.h
| M	src/features/FKFeatures.cpp
| M	src/features/FKFeatures.h
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/RealFeatures.cpp
| M	src/features/RealFeatures.h
| M	src/features/RealFileFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.cpp
| M	src/features/ShortFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/SparseRealFeatures.cpp
| M	src/features/SparseRealFeatures.h
| M	src/features/StringFeatures.cpp
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.cpp
| M	src/features/TOPFeatures.h
| M	src/features/WordFeatures.cpp
| M	src/features/WordFeatures.h
| M	src/gui/GUI.cpp
| M	src/gui/GUI.h
| M	src/gui/Matlab.cpp
| M	src/gui/Octave.cpp
| M	src/gui/Python.cpp
| M	src/gui/Python.h
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| M	src/gui/TextGUI.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKNN.cpp
| M	src/guilib/GUIKNN.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUILabels.cpp
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIOctave.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIPython.h
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
| M	src/guilib/GUISVM.cpp
| M	src/guilib/GUISVM.h
| M	src/guilib/GUITime.cpp
| M	src/guilib/GUITime.h
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/AUCKernel.h
| M	src/kernel/ByteKernel.h
| M	src/kernel/CanberraWordKernel.cpp
| M	src/kernel/CanberraWordKernel.h
| M	src/kernel/CharKernel.h
| M	src/kernel/CharPolyKernel.cpp
| M	src/kernel/CharPolyKernel.h
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordKernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.cpp
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/DiagKernel.cpp
| M	src/kernel/DiagKernel.h
| M	src/kernel/FixedDegreeCharKernel.cpp
| M	src/kernel/FixedDegreeCharKernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/HammingWordKernel.cpp
| M	src/kernel/HammingWordKernel.h
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/HistogramWordKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/KernelMachine.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearCharKernel.cpp
| M	src/kernel/LinearCharKernel.h
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalityImprovedCharKernel.cpp
| M	src/kernel/LocalityImprovedCharKernel.h
| M	src/kernel/ManhattenWordKernel.cpp
| M	src/kernel/ManhattenWordKernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchCharKernel.cpp
| M	src/kernel/PolyMatchCharKernel.h
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/PolyMatchWordKernel.h
| M	src/kernel/RealKernel.h
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.h
| M	src/kernel/ShortKernel.h
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleLocalityImprovedCharKernel.cpp
| M	src/kernel/SimpleLocalityImprovedCharKernel.h
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparseNormSquaredKernel.cpp
| M	src/kernel/SparseNormSquaredKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/SparseRealKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/WDCharKernel.cpp
| M	src/kernel/WDCharKernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreeCharKernelPolyA.cpp
| M	src/kernel/WeightedDegreeCharKernelPolyA.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WordKernel.h
| M	src/kernel/WordMatchKernel.cpp
| M	src/kernel/WordMatchKernel.h
| M	src/lib/Cache.h
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
| M	src/lib/DynArray.h
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/List.h
| M	src/lib/Mathmatics.cpp
| M	src/lib/Mathmatics.h
| M	src/lib/Parallel.cpp
| M	src/lib/Parallel.h
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.cpp
| M	src/lib/Time.h
| M	src/lib/Version.cpp
| M	src/lib/Version.h
| M	src/lib/common.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/lapack.h
| M	src/preproc/LogPlusOne.cpp
| M	src/preproc/LogPlusOne.h
| M	src/preproc/NormDerivativeLem3.cpp
| M	src/preproc/NormDerivativeLem3.h
| M	src/preproc/NormOne.cpp
| M	src/preproc/NormOne.h
| M	src/preproc/PCACut.cpp
| M	src/preproc/PCACut.h
| M	src/preproc/PreProc.cpp
| M	src/preproc/PreProc.h
| M	src/preproc/PruneVarSubMean.cpp
| M	src/preproc/PruneVarSubMean.h
| M	src/preproc/RealPreProc.h
| M	src/preproc/ShortPreProc.cpp
| M	src/preproc/ShortPreProc.h
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SortUlongString.cpp
| M	src/preproc/SortUlongString.h
| M	src/preproc/SortWord.cpp
| M	src/preproc/SortWord.h
| M	src/preproc/SortWordString.cpp
| M	src/preproc/SortWordString.h
| M	src/preproc/SparsePreProc.h
| M	src/preproc/StringPreProc.h
| M	src/preproc/WordPreProc.cpp
| M	src/preproc/WordPreProc.h
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/LibSVR.h
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
| D	src/svm/svm_learn.h
|  
* commit 459b8a638241a20b82326f4b9be195234c967e6b
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Tue Jun 13 16:47:16 2006 +0000
| 
|     added length parameter to set_features
| 
| M	src/gui/R.cpp
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
|  
* commit 43a1fc6ba8608cc536685aadcb34f8f9ee8b390e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 12 10:27:30 2006 +0000
| 
|     +make configure executable
| 
| M	src/configure
|  
* commit 440e46efd036c0e0ea292d7d02a4972e714d034c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 11 23:07:59 2006 +0000
| 
|     + make char features work with numarray (work around bug in numarray and take type info from self->descr->type_num
|     + set/get_svm in R interf.
|     + make clean should not mess around in .svn
| 
| M	src/Makefile
| M	src/configure
| M	src/gui/R.cpp
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
|  
* commit f57d56fe01cb8695e4dfdb824fff10e91a80d240
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 8 11:59:44 2006 +0000
| 
|     - -fforce-mem from configure
|     + make R interface work with matrices (not just 1d-vectors) and string matrices
|     + overload CIO::message for R to use Rprintf / Reprintf
| 
| M	src/classifier/svm/MPD.h
| M	src/configure
| M	src/gui/R.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIR.cpp
| M	src/lib/io.cpp
|  
* commit 8e260a5937237bc56bf3ef3908f94869e72eb604
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Jun 6 12:06:47 2006 +0000
| 
|     gu's 2nd test.
|     G
| 
| D	src/deletemetoo
|  
* commit 5dabca3d3fe9bca977f55f5fcfd929cbf014cbbf
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Jun 6 12:06:29 2006 +0000
| 
|     gu's test.
|     G
| 
| A	src/deletemetoo
|  
* commit 388dc8c07392684ca2c02fd6a77b5ce9b5d351dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 5 22:04:50 2006 +0000
| 
|     + classification example
| 
| M	R/configure
| A	R/examples/classification.R
| M	R/examples/regression.R
| M	src/gui/R.cpp
| M	src/guilib/GUIR.cpp
|  
* commit 13092064efb7bb2313133e0c3595fb27ce0653de
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 5 15:12:24 2006 +0000
| 
| A	R/examples/regression.R
|  
* commit c16084c387e8ae28e4d0d26cd237978c90fe6659
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 5 15:11:05 2006 +0000
| 
| M	R/Makefile
|  
* commit 7535780088d1494f968379e21a783bf3217ea6ee
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 5 15:07:10 2006 +0000
| 
| A	R/Makefile
| A	R/README.txt
| A	R/configure
| A	R/sg/COPYING
| A	R/sg/DESCRIPTION
| A	R/sg/INDEX
| A	R/sg/R/shogun.R
| A	R/sg/R/zzz.R
| A	R/sg/R_PROFILE.R
| A	R/sg/cleanup
| A	R/sg/demo/Rtest.R
| A	R/sg/demo/mkl_lin_sine_mix.R
| A	R/sg/demo/mkl_sine_regression.R
| A	R/sg/demo/string_kernel.R
| A	R/sg/demo/test.R
| A	R/sg/demo/test_hmm.R
| A	R/sg/demo/test_hmm_DNA.R
| A	R/sg/demo/wd_mkl.R
| A	R/sg/demo/x-max_class.R
| A	R/sg/install.R
| A	R/sg/tests/test.R
| D	interfaces/R/Makefile
| D	interfaces/R/README.txt
| D	interfaces/R/configure
| D	interfaces/R/sg/COPYING
| D	interfaces/R/sg/DESCRIPTION
| D	interfaces/R/sg/INDEX
| D	interfaces/R/sg/R/shogun.R
| D	interfaces/R/sg/R/zzz.R
| D	interfaces/R/sg/R_PROFILE.R
| D	interfaces/R/sg/cleanup
| D	interfaces/R/sg/demo/Rtest.R
| D	interfaces/R/sg/demo/mkl_lin_sine_mix.R
| D	interfaces/R/sg/demo/mkl_sine_regression.R
| D	interfaces/R/sg/demo/string_kernel.R
| D	interfaces/R/sg/demo/test.R
| D	interfaces/R/sg/demo/test_hmm.R
| D	interfaces/R/sg/demo/test_hmm_DNA.R
| D	interfaces/R/sg/demo/wd_mkl.R
| D	interfaces/R/sg/demo/x-max_class.R
| D	interfaces/R/sg/install.R
| D	interfaces/R/sg/tests/test.R
| D	interfaces/matlab/examples/@hmm/backward.m
| D	interfaces/matlab/examples/@hmm/bw_a.m
| D	interfaces/matlab/examples/@hmm/bw_b.m
| D	interfaces/matlab/examples/@hmm/bw_p.m
| D	interfaces/matlab/examples/@hmm/bw_q.m
| D	interfaces/matlab/examples/@hmm/forward.m
| D	interfaces/matlab/examples/@hmm/gamma.m
| D	interfaces/matlab/examples/@hmm/hmm.m
| D	interfaces/matlab/examples/@hmm/xi.m
| D	interfaces/matlab/examples/svmlight_hang_test.m
| D	interfaces/matlab/examples/test_classifier.m
| D	interfaces/matlab/examples/test_combined.m
| D	interfaces/matlab/examples/test_combined2.m
| D	interfaces/matlab/examples/test_custom_kernel.m
| D	interfaces/matlab/examples/test_hmm.m
| D	interfaces/matlab/examples/test_hmm_matlab.m
| D	interfaces/matlab/examples/test_kernel_optimization.m
| D	interfaces/matlab/examples/test_linadd.m
| D	interfaces/matlab/examples/test_matlab_interface.m
| D	interfaces/matlab/examples/test_mkl.m
| D	interfaces/matlab/examples/test_mkl_svr.m
| D	interfaces/matlab/examples/test_mkl_svr_wrapper.m
| D	interfaces/matlab/examples/test_rbf_kernel.m
| D	interfaces/matlab/examples/test_regression.m
| D	interfaces/matlab/examples/test_regression_linadd.m
| D	interfaces/matlab/examples/test_regression_mkl.m
| D	interfaces/matlab/examples/test_svm.m
| D	interfaces/matlab/examples/test_svmlight_libsvm.m
| D	interfaces/matlab/examples/test_svrlight_libsvr.m
| D	interfaces/matlab/examples/test_wd_linadd.m
| D	interfaces/matlab/examples/test_wdshift_kernel.m
| D	interfaces/matlab/examples/tools/PCACut.m
| D	interfaces/matlab/examples/tools/README
| D	interfaces/matlab/examples/tools/calcroc.m
| D	interfaces/matlab/examples/tools/calcrocscore.m
| D	interfaces/matlab/examples/tools/graph_hmm.m
| D	interfaces/matlab/examples/tools/graph_hmm2.m
| D	interfaces/matlab/examples/tools/model_to_graph.m
| D	interfaces/matlab/examples/tools/plotroc.m
| D	interfaces/matlab/examples/tools/read_feature_matrix.m
| D	interfaces/matlab/examples/tools/readroc.m
| D	interfaces/matlab/examples/tools/save_as_ascii.m
| D	interfaces/matlab/examples/tools/save_as_double.m
| D	interfaces/python/examples/fabio_test.py
| D	interfaces/python/examples/test_mkl.py
| D	interfaces/python/examples/test_mpdsvm.py
| D	interfaces/python/examples/test_python.py
| A	matlab/examples/@hmm/backward.m
| A	matlab/examples/@hmm/bw_a.m
| A	matlab/examples/@hmm/bw_b.m
| A	matlab/examples/@hmm/bw_p.m
| A	matlab/examples/@hmm/bw_q.m
| A	matlab/examples/@hmm/forward.m
| A	matlab/examples/@hmm/gamma.m
| A	matlab/examples/@hmm/hmm.m
| A	matlab/examples/@hmm/xi.m
| A	matlab/examples/svmlight_hang_test.m
| A	matlab/examples/test_classifier.m
| A	matlab/examples/test_combined.m
| A	matlab/examples/test_combined2.m
| A	matlab/examples/test_custom_kernel.m
| A	matlab/examples/test_hmm.m
| A	matlab/examples/test_hmm_matlab.m
| A	matlab/examples/test_kernel_optimization.m
| A	matlab/examples/test_linadd.m
| A	matlab/examples/test_matlab_interface.m
| A	matlab/examples/test_mkl.m
| A	matlab/examples/test_mkl_svr.m
| A	matlab/examples/test_mkl_svr_wrapper.m
| A	matlab/examples/test_rbf_kernel.m
| A	matlab/examples/test_regression.m
| A	matlab/examples/test_regression_linadd.m
| A	matlab/examples/test_regression_mkl.m
| A	matlab/examples/test_svm.m
| A	matlab/examples/test_svmlight_libsvm.m
| A	matlab/examples/test_svrlight_libsvr.m
| A	matlab/examples/test_wd_linadd.m
| A	matlab/examples/test_wdshift_kernel.m
| A	matlab/examples/tools/PCACut.m
| A	matlab/examples/tools/README
| A	matlab/examples/tools/calcroc.m
| A	matlab/examples/tools/calcrocscore.m
| A	matlab/examples/tools/graph_hmm.m
| A	matlab/examples/tools/graph_hmm2.m
| A	matlab/examples/tools/model_to_graph.m
| A	matlab/examples/tools/plotroc.m
| A	matlab/examples/tools/read_feature_matrix.m
| A	matlab/examples/tools/readroc.m
| A	matlab/examples/tools/save_as_ascii.m
| A	matlab/examples/tools/save_as_double.m
| A	python/examples/fabio_test.py
| A	python/examples/test_mkl.py
| A	python/examples/test_mpdsvm.py
| A	python/examples/test_python.py
|  
* commit 584bc0e961cb6cca26bb562d1c3ec9c2b15e27c1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 5 14:47:24 2006 +0000
| 
| D	interfaces/examples/@hmm/backward.m
| D	interfaces/examples/@hmm/bw_a.m
| D	interfaces/examples/@hmm/bw_b.m
| D	interfaces/examples/@hmm/bw_p.m
| D	interfaces/examples/@hmm/bw_q.m
| D	interfaces/examples/@hmm/forward.m
| D	interfaces/examples/@hmm/gamma.m
| D	interfaces/examples/@hmm/hmm.m
| D	interfaces/examples/@hmm/xi.m
| D	interfaces/examples/svmlight_hang_test.m
| D	interfaces/examples/test_classifier.m
| D	interfaces/examples/test_combined.m
| D	interfaces/examples/test_combined2.m
| D	interfaces/examples/test_custom_kernel.m
| D	interfaces/examples/test_hmm.m
| D	interfaces/examples/test_hmm_matlab.m
| D	interfaces/examples/test_kernel_optimization.m
| D	interfaces/examples/test_linadd.m
| D	interfaces/examples/test_matlab_interface.m
| D	interfaces/examples/test_mkl.m
| D	interfaces/examples/test_mkl_svr.m
| D	interfaces/examples/test_mkl_svr_wrapper.m
| D	interfaces/examples/test_rbf_kernel.m
| D	interfaces/examples/test_regression.m
| D	interfaces/examples/test_regression_linadd.m
| D	interfaces/examples/test_regression_mkl.m
| D	interfaces/examples/test_svm.m
| D	interfaces/examples/test_svmlight_libsvm.m
| D	interfaces/examples/test_svrlight_libsvr.m
| D	interfaces/examples/test_wd_linadd.m
| D	interfaces/examples/test_wdshift_kernel.m
| D	interfaces/examples/tools/PCACut.m
| D	interfaces/examples/tools/README
| D	interfaces/examples/tools/calcroc.m
| D	interfaces/examples/tools/calcrocscore.m
| D	interfaces/examples/tools/graph_hmm.m
| D	interfaces/examples/tools/graph_hmm2.m
| D	interfaces/examples/tools/model_to_graph.m
| D	interfaces/examples/tools/plotroc.m
| D	interfaces/examples/tools/read_feature_matrix.m
| D	interfaces/examples/tools/readroc.m
| D	interfaces/examples/tools/save_as_ascii.m
| D	interfaces/examples/tools/save_as_double.m
| A	interfaces/matlab/examples/@hmm/backward.m
| A	interfaces/matlab/examples/@hmm/bw_a.m
| A	interfaces/matlab/examples/@hmm/bw_b.m
| A	interfaces/matlab/examples/@hmm/bw_p.m
| A	interfaces/matlab/examples/@hmm/bw_q.m
| A	interfaces/matlab/examples/@hmm/forward.m
| A	interfaces/matlab/examples/@hmm/gamma.m
| A	interfaces/matlab/examples/@hmm/hmm.m
| A	interfaces/matlab/examples/@hmm/xi.m
| A	interfaces/matlab/examples/svmlight_hang_test.m
| A	interfaces/matlab/examples/test_classifier.m
| A	interfaces/matlab/examples/test_combined.m
| A	interfaces/matlab/examples/test_combined2.m
| A	interfaces/matlab/examples/test_custom_kernel.m
| A	interfaces/matlab/examples/test_hmm.m
| A	interfaces/matlab/examples/test_hmm_matlab.m
| A	interfaces/matlab/examples/test_kernel_optimization.m
| A	interfaces/matlab/examples/test_linadd.m
| A	interfaces/matlab/examples/test_matlab_interface.m
| A	interfaces/matlab/examples/test_mkl.m
| A	interfaces/matlab/examples/test_mkl_svr.m
| A	interfaces/matlab/examples/test_mkl_svr_wrapper.m
| A	interfaces/matlab/examples/test_rbf_kernel.m
| A	interfaces/matlab/examples/test_regression.m
| A	interfaces/matlab/examples/test_regression_linadd.m
| A	interfaces/matlab/examples/test_regression_mkl.m
| A	interfaces/matlab/examples/test_svm.m
| A	interfaces/matlab/examples/test_svmlight_libsvm.m
| A	interfaces/matlab/examples/test_svrlight_libsvr.m
| A	interfaces/matlab/examples/test_wd_linadd.m
| A	interfaces/matlab/examples/test_wdshift_kernel.m
| A	interfaces/matlab/examples/tools/PCACut.m
| A	interfaces/matlab/examples/tools/README
| A	interfaces/matlab/examples/tools/calcroc.m
| A	interfaces/matlab/examples/tools/calcrocscore.m
| A	interfaces/matlab/examples/tools/graph_hmm.m
| A	interfaces/matlab/examples/tools/graph_hmm2.m
| A	interfaces/matlab/examples/tools/model_to_graph.m
| A	interfaces/matlab/examples/tools/plotroc.m
| A	interfaces/matlab/examples/tools/read_feature_matrix.m
| A	interfaces/matlab/examples/tools/readroc.m
| A	interfaces/matlab/examples/tools/save_as_ascii.m
| A	interfaces/matlab/examples/tools/save_as_double.m
| A	interfaces/python/examples/fabio_test.py
| A	interfaces/python/examples/test_mkl.py
| A	interfaces/python/examples/test_mpdsvm.py
| A	interfaces/python/examples/test_python.py
| D	interfaces/python/fabio_test.py
| D	interfaces/python/test_mkl.py
| D	interfaces/python/test_mpdsvm.py
| D	interfaces/python/test_python.py
|  
* commit 3c7799a3ce1f7623bd8e8819820a52fc45ae7d3a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 5 14:44:48 2006 +0000
| 
| A	interfaces/examples/@hmm/backward.m
| A	interfaces/examples/@hmm/bw_a.m
| A	interfaces/examples/@hmm/bw_b.m
| A	interfaces/examples/@hmm/bw_p.m
| A	interfaces/examples/@hmm/bw_q.m
| A	interfaces/examples/@hmm/forward.m
| A	interfaces/examples/@hmm/gamma.m
| A	interfaces/examples/@hmm/hmm.m
| A	interfaces/examples/@hmm/xi.m
| A	interfaces/examples/svmlight_hang_test.m
| A	interfaces/examples/test_classifier.m
| A	interfaces/examples/test_combined.m
| A	interfaces/examples/test_combined2.m
| A	interfaces/examples/test_custom_kernel.m
| A	interfaces/examples/test_hmm.m
| A	interfaces/examples/test_hmm_matlab.m
| A	interfaces/examples/test_kernel_optimization.m
| A	interfaces/examples/test_linadd.m
| A	interfaces/examples/test_matlab_interface.m
| A	interfaces/examples/test_mkl.m
| A	interfaces/examples/test_mkl_svr.m
| A	interfaces/examples/test_mkl_svr_wrapper.m
| A	interfaces/examples/test_rbf_kernel.m
| A	interfaces/examples/test_regression.m
| A	interfaces/examples/test_regression_linadd.m
| A	interfaces/examples/test_regression_mkl.m
| A	interfaces/examples/test_svm.m
| A	interfaces/examples/test_svmlight_libsvm.m
| A	interfaces/examples/test_svrlight_libsvr.m
| A	interfaces/examples/test_wd_linadd.m
| A	interfaces/examples/test_wdshift_kernel.m
| A	interfaces/examples/tools/PCACut.m
| A	interfaces/examples/tools/README
| A	interfaces/examples/tools/calcroc.m
| A	interfaces/examples/tools/calcrocscore.m
| A	interfaces/examples/tools/graph_hmm.m
| A	interfaces/examples/tools/graph_hmm2.m
| A	interfaces/examples/tools/model_to_graph.m
| A	interfaces/examples/tools/plotroc.m
| A	interfaces/examples/tools/read_feature_matrix.m
| A	interfaces/examples/tools/readroc.m
| A	interfaces/examples/tools/save_as_ascii.m
| A	interfaces/examples/tools/save_as_double.m
| D	interfaces/matlab/@hmm/backward.m
| D	interfaces/matlab/@hmm/bw_a.m
| D	interfaces/matlab/@hmm/bw_b.m
| D	interfaces/matlab/@hmm/bw_p.m
| D	interfaces/matlab/@hmm/bw_q.m
| D	interfaces/matlab/@hmm/forward.m
| D	interfaces/matlab/@hmm/gamma.m
| D	interfaces/matlab/@hmm/hmm.m
| D	interfaces/matlab/@hmm/xi.m
| D	interfaces/matlab/svmlight_hang_test.m
| D	interfaces/matlab/test_classifier.m
| D	interfaces/matlab/test_combined.m
| D	interfaces/matlab/test_combined2.m
| D	interfaces/matlab/test_custom_kernel.m
| D	interfaces/matlab/test_hmm.m
| D	interfaces/matlab/test_hmm_matlab.m
| D	interfaces/matlab/test_kernel_optimization.m
| D	interfaces/matlab/test_linadd.m
| D	interfaces/matlab/test_matlab_interface.m
| D	interfaces/matlab/test_mkl.m
| D	interfaces/matlab/test_mkl_svr.m
| D	interfaces/matlab/test_mkl_svr_wrapper.m
| D	interfaces/matlab/test_rbf_kernel.m
| D	interfaces/matlab/test_regression.m
| D	interfaces/matlab/test_regression_linadd.m
| D	interfaces/matlab/test_regression_mkl.m
| D	interfaces/matlab/test_svm.m
| D	interfaces/matlab/test_svmlight_libsvm.m
| D	interfaces/matlab/test_svrlight_libsvr.m
| D	interfaces/matlab/test_wd_linadd.m
| D	interfaces/matlab/test_wdshift_kernel.m
| D	interfaces/matlab/tools/PCACut.m
| D	interfaces/matlab/tools/README
| D	interfaces/matlab/tools/calcroc.m
| D	interfaces/matlab/tools/calcrocscore.m
| D	interfaces/matlab/tools/graph_hmm.m
| D	interfaces/matlab/tools/graph_hmm2.m
| D	interfaces/matlab/tools/model_to_graph.m
| D	interfaces/matlab/tools/plotroc.m
| D	interfaces/matlab/tools/read_feature_matrix.m
| D	interfaces/matlab/tools/readroc.m
| D	interfaces/matlab/tools/save_as_ascii.m
| D	interfaces/matlab/tools/save_as_double.m
|  
* commit 325dbb59e40825a1e009738c42cd528f81043fdc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 5 14:39:16 2006 +0000
| 
| D	R/Makefile
| D	R/README.txt
| D	R/configure
| D	R/sg/COPYING
| D	R/sg/DESCRIPTION
| D	R/sg/INDEX
| D	R/sg/R/shogun.R
| D	R/sg/R/zzz.R
| D	R/sg/R_PROFILE.R
| D	R/sg/cleanup
| D	R/sg/demo/Rtest.R
| D	R/sg/demo/mkl_lin_sine_mix.R
| D	R/sg/demo/mkl_sine_regression.R
| D	R/sg/demo/string_kernel.R
| D	R/sg/demo/test.R
| D	R/sg/demo/test_hmm.R
| D	R/sg/demo/test_hmm_DNA.R
| D	R/sg/demo/wd_mkl.R
| D	R/sg/demo/x-max_class.R
| D	R/sg/install.R
| D	R/sg/tests/test.R
| A	interfaces/R/Makefile
| A	interfaces/R/README.txt
| A	interfaces/R/configure
| A	interfaces/R/sg/COPYING
| A	interfaces/R/sg/DESCRIPTION
| A	interfaces/R/sg/INDEX
| A	interfaces/R/sg/R/shogun.R
| A	interfaces/R/sg/R/zzz.R
| A	interfaces/R/sg/R_PROFILE.R
| A	interfaces/R/sg/cleanup
| A	interfaces/R/sg/demo/Rtest.R
| A	interfaces/R/sg/demo/mkl_lin_sine_mix.R
| A	interfaces/R/sg/demo/mkl_sine_regression.R
| A	interfaces/R/sg/demo/string_kernel.R
| A	interfaces/R/sg/demo/test.R
| A	interfaces/R/sg/demo/test_hmm.R
| A	interfaces/R/sg/demo/test_hmm_DNA.R
| A	interfaces/R/sg/demo/wd_mkl.R
| A	interfaces/R/sg/demo/x-max_class.R
| A	interfaces/R/sg/install.R
| A	interfaces/R/sg/tests/test.R
| A	interfaces/matlab/@hmm/backward.m
| A	interfaces/matlab/@hmm/bw_a.m
| A	interfaces/matlab/@hmm/bw_b.m
| A	interfaces/matlab/@hmm/bw_p.m
| A	interfaces/matlab/@hmm/bw_q.m
| A	interfaces/matlab/@hmm/forward.m
| A	interfaces/matlab/@hmm/gamma.m
| A	interfaces/matlab/@hmm/hmm.m
| A	interfaces/matlab/@hmm/xi.m
| A	interfaces/matlab/svmlight_hang_test.m
| A	interfaces/matlab/test_classifier.m
| A	interfaces/matlab/test_combined.m
| A	interfaces/matlab/test_combined2.m
| A	interfaces/matlab/test_custom_kernel.m
| A	interfaces/matlab/test_hmm.m
| A	interfaces/matlab/test_hmm_matlab.m
| A	interfaces/matlab/test_kernel_optimization.m
| A	interfaces/matlab/test_linadd.m
| A	interfaces/matlab/test_matlab_interface.m
| A	interfaces/matlab/test_mkl.m
| A	interfaces/matlab/test_mkl_svr.m
| A	interfaces/matlab/test_mkl_svr_wrapper.m
| A	interfaces/matlab/test_rbf_kernel.m
| A	interfaces/matlab/test_regression.m
| A	interfaces/matlab/test_regression_linadd.m
| A	interfaces/matlab/test_regression_mkl.m
| A	interfaces/matlab/test_svm.m
| A	interfaces/matlab/test_svmlight_libsvm.m
| A	interfaces/matlab/test_svrlight_libsvr.m
| A	interfaces/matlab/test_wd_linadd.m
| A	interfaces/matlab/test_wdshift_kernel.m
| A	interfaces/matlab/tools/PCACut.m
| A	interfaces/matlab/tools/README
| A	interfaces/matlab/tools/calcroc.m
| A	interfaces/matlab/tools/calcrocscore.m
| A	interfaces/matlab/tools/graph_hmm.m
| A	interfaces/matlab/tools/graph_hmm2.m
| A	interfaces/matlab/tools/model_to_graph.m
| A	interfaces/matlab/tools/plotroc.m
| A	interfaces/matlab/tools/read_feature_matrix.m
| A	interfaces/matlab/tools/readroc.m
| A	interfaces/matlab/tools/save_as_ascii.m
| A	interfaces/matlab/tools/save_as_double.m
| A	interfaces/python/fabio_test.py
| A	interfaces/python/test_mkl.py
| A	interfaces/python/test_mpdsvm.py
| A	interfaces/python/test_python.py
| D	matlab/@hmm/backward.m
| D	matlab/@hmm/bw_a.m
| D	matlab/@hmm/bw_b.m
| D	matlab/@hmm/bw_p.m
| D	matlab/@hmm/bw_q.m
| D	matlab/@hmm/forward.m
| D	matlab/@hmm/gamma.m
| D	matlab/@hmm/hmm.m
| D	matlab/@hmm/xi.m
| D	matlab/svmlight_hang_test.m
| D	matlab/test_classifier.m
| D	matlab/test_combined.m
| D	matlab/test_combined2.m
| D	matlab/test_custom_kernel.m
| D	matlab/test_hmm.m
| D	matlab/test_hmm_matlab.m
| D	matlab/test_kernel_optimization.m
| D	matlab/test_linadd.m
| D	matlab/test_matlab_interface.m
| D	matlab/test_mkl.m
| D	matlab/test_mkl_svr.m
| D	matlab/test_mkl_svr_wrapper.m
| D	matlab/test_rbf_kernel.m
| D	matlab/test_regression.m
| D	matlab/test_regression_linadd.m
| D	matlab/test_regression_mkl.m
| D	matlab/test_svm.m
| D	matlab/test_svmlight_libsvm.m
| D	matlab/test_svrlight_libsvr.m
| D	matlab/test_wd_linadd.m
| D	matlab/test_wdshift_kernel.m
| D	matlab/tools/PCACut.m
| D	matlab/tools/README
| D	matlab/tools/calcroc.m
| D	matlab/tools/calcrocscore.m
| D	matlab/tools/graph_hmm.m
| D	matlab/tools/graph_hmm2.m
| D	matlab/tools/model_to_graph.m
| D	matlab/tools/plotroc.m
| D	matlab/tools/read_feature_matrix.m
| D	matlab/tools/readroc.m
| D	matlab/tools/save_as_ascii.m
| D	matlab/tools/save_as_double.m
| D	python/fabio_test.py
| D	python/test_mkl.py
| D	python/test_mpdsvm.py
| D	python/test_python.py
| D	tests/gen_int.cpp
| D	tests/gen_sparse.cpp
| D	tests/runtime_type_detection.cpp
| D	tests/type_comparison.cpp
|  
* commit 6db66fa3e949cd95fcd72636b62f535c4c23c462
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 5 14:37:10 2006 +0000
| 
| A	R/Makefile
| A	R/README.txt
| A	R/configure
| A	R/sg/COPYING
| A	R/sg/DESCRIPTION
| A	R/sg/INDEX
| A	R/sg/R/shogun.R
| A	R/sg/R/zzz.R
| A	R/sg/R_PROFILE.R
| A	R/sg/cleanup
| A	R/sg/demo/Rtest.R
| A	R/sg/demo/mkl_lin_sine_mix.R
| A	R/sg/demo/mkl_sine_regression.R
| A	R/sg/demo/string_kernel.R
| A	R/sg/demo/test.R
| A	R/sg/demo/test_hmm.R
| A	R/sg/demo/test_hmm_DNA.R
| A	R/sg/demo/wd_mkl.R
| A	R/sg/demo/x-max_class.R
| A	R/sg/install.R
| A	R/sg/tests/test.R
|  
* commit df17cc4574995c93428fd03f518b8aee98a72579
  Author: Soeren Sonnenburg <sonne@debian.org>
  Date:   Mon Jun 5 14:33:25 2006 +0000
  
  A	doc/doxygen/Doxyfile
  A	doc/doxygen/footer.dpp
  A	matlab/@hmm/backward.m
  A	matlab/@hmm/bw_a.m
  A	matlab/@hmm/bw_b.m
  A	matlab/@hmm/bw_p.m
  A	matlab/@hmm/bw_q.m
  A	matlab/@hmm/forward.m
  A	matlab/@hmm/gamma.m
  A	matlab/@hmm/hmm.m
  A	matlab/@hmm/xi.m
  A	matlab/svmlight_hang_test.m
  A	matlab/test_classifier.m
  A	matlab/test_combined.m
  A	matlab/test_combined2.m
  A	matlab/test_custom_kernel.m
  A	matlab/test_hmm.m
  A	matlab/test_hmm_matlab.m
  A	matlab/test_kernel_optimization.m
  A	matlab/test_linadd.m
  A	matlab/test_matlab_interface.m
  A	matlab/test_mkl.m
  A	matlab/test_mkl_svr.m
  A	matlab/test_mkl_svr_wrapper.m
  A	matlab/test_rbf_kernel.m
  A	matlab/test_regression.m
  A	matlab/test_regression_linadd.m
  A	matlab/test_regression_mkl.m
  A	matlab/test_svm.m
  A	matlab/test_svmlight_libsvm.m
  A	matlab/test_svrlight_libsvr.m
  A	matlab/test_wd_linadd.m
  A	matlab/test_wdshift_kernel.m
  A	matlab/tools/PCACut.m
  A	matlab/tools/README
  A	matlab/tools/calcroc.m
  A	matlab/tools/calcrocscore.m
  A	matlab/tools/graph_hmm.m
  A	matlab/tools/graph_hmm2.m
  A	matlab/tools/model_to_graph.m
  A	matlab/tools/plotroc.m
  A	matlab/tools/read_feature_matrix.m
  A	matlab/tools/readroc.m
  A	matlab/tools/save_as_ascii.m
  A	matlab/tools/save_as_double.m
  A	python/fabio_test.py
  A	python/test_mkl.py
  A	python/test_mpdsvm.py
  A	python/test_python.py
  A	src/.cpuinfo.c
  A	src/.generate_link_dependencies.py
  A	src/.version.sh
  A	src/HISTORY
  A	src/LICENSE
  A	src/Makefile
  A	src/README
  A	src/TODO
  A	src/classifier/Classifier.cpp
  A	src/classifier/Classifier.h
  A	src/classifier/Classifier.i
  A	src/classifier/KNN.cpp
  A	src/classifier/KNN.h
  A	src/classifier/KNN.i
  A	src/classifier/KernelPerceptron.cpp
  A	src/classifier/KernelPerceptron.h
  A	src/classifier/KernelPerceptron.i
  A	src/classifier/LDA.cpp
  A	src/classifier/LDA.h
  A	src/classifier/LDA.i
  A	src/classifier/LPM.cpp
  A	src/classifier/LPM.h
  A	src/classifier/LPM.i
  A	src/classifier/LinearClassifier.cpp
  A	src/classifier/LinearClassifier.h
  A	src/classifier/LinearClassifier.i
  A	src/classifier/Perceptron.cpp
  A	src/classifier/Perceptron.h
  A	src/classifier/Perceptron.i
  A	src/classifier/PluginEstimate.cpp
  A	src/classifier/PluginEstimate.h
  A	src/classifier/PluginEstimate.i
  A	src/classifier/__init__.py
  A	src/classifier/svm/CPLEXSVM.cpp
  A	src/classifier/svm/CPLEXSVM.h
  A	src/classifier/svm/GPBTSVM.cpp
  A	src/classifier/svm/GPBTSVM.h
  A	src/classifier/svm/KerthiPrimalSVM.cpp
  A	src/classifier/svm/KerthiPrimalSVM.h
  A	src/classifier/svm/LibSVM.cpp
  A	src/classifier/svm/LibSVM.h
  A	src/classifier/svm/LibSVM.i
  A	src/classifier/svm/MPD.cpp
  A	src/classifier/svm/MPD.h
  A	src/classifier/svm/Optimizer.cpp
  A	src/classifier/svm/Optimizer.h
  A	src/classifier/svm/SVM.cpp
  A	src/classifier/svm/SVM.h
  A	src/classifier/svm/SVM.i
  A	src/classifier/svm/SVM_libsvm.cpp
  A	src/classifier/svm/SVM_libsvm.h
  A	src/classifier/svm/SVM_light.cpp
  A	src/classifier/svm/SVM_light.h
  A	src/classifier/svm/SVM_light.i
  A	src/classifier/svm/__init__.py
  A	src/classifier/svm/gpdt.cpp
  A	src/classifier/svm/gpdt.h
  A	src/classifier/svm/gpdtsolve.cpp
  A	src/classifier/svm/gpm.cpp
  A	src/classifier/svm/pr_loqo.cpp
  A	src/classifier/svm/pr_loqo.h
  A	src/configure
  A	src/d-bug.py
  A	src/distributions/Distribution.cpp
  A	src/distributions/Distribution.h
  A	src/distributions/Distribution.i
  A	src/distributions/histogram/Histogram.cpp
  A	src/distributions/histogram/Histogram.h
  A	src/distributions/hmm/GHMM.cpp
  A	src/distributions/hmm/GHMM.h
  A	src/distributions/hmm/HMM.cpp
  A	src/distributions/hmm/HMM.h
  A	src/distributions/hmm/HMM_bestpath.cpp
  A	src/distributions/hmm/HMM_bestpath_2struct.cpp
  A	src/distributions/hmm/HMM_bestpath_simple.cpp
  A	src/distributions/hmm/LinearHMM.cpp
  A	src/distributions/hmm/LinearHMM.h
  A	src/distributions/hmm/fibheap.cpp
  A	src/distributions/hmm/fibheap.h
  A	src/distributions/hmm/penalty_info.cpp
  A	src/distributions/hmm/penalty_info.h
  A	src/features/ByteFeatures.cpp
  A	src/features/ByteFeatures.h
  A	src/features/ByteFeatures.i
  A	src/features/CharFeatures.cpp
  A	src/features/CharFeatures.h
  A	src/features/CharFeatures.i
  A	src/features/CombinedFeatures.cpp
  A	src/features/CombinedFeatures.h
  A	src/features/CombinedFeatures.i
  A	src/features/FKFeatures.cpp
  A	src/features/FKFeatures.h
  A	src/features/FKFeatures.i
  A	src/features/Features.cpp
  A	src/features/Features.h
  A	src/features/Features.i
  A	src/features/Labels.cpp
  A	src/features/Labels.h
  A	src/features/Labels.i
  A	src/features/RealFeatures.cpp
  A	src/features/RealFeatures.h
  A	src/features/RealFeatures.i
  A	src/features/RealFileFeatures.cpp
  A	src/features/RealFileFeatures.h
  A	src/features/RealFileFeatures.i
  A	src/features/ShortFeatures.cpp
  A	src/features/ShortFeatures.h
  A	src/features/ShortFeatures.i
  A	src/features/SimpleFeatures.h
  A	src/features/SimpleFeatures.i
  A	src/features/SparseFeatures.h
  A	src/features/SparseFeatures.i
  A	src/features/SparseRealFeatures.cpp
  A	src/features/SparseRealFeatures.h
  A	src/features/SparseRealFeatures.i
  A	src/features/StringFeatures.cpp
  A	src/features/StringFeatures.h
  A	src/features/StringFeatures.i
  A	src/features/TOPFeatures.cpp
  A	src/features/TOPFeatures.h
  A	src/features/TOPFeatures.i
  A	src/features/WordFeatures.cpp
  A	src/features/WordFeatures.h
  A	src/features/WordFeatures.i
  A	src/features/__init__.py
  A	src/g.R
  A	src/gui/GUI.cpp
  A	src/gui/GUI.h
  A	src/gui/Matlab.cpp
  A	src/gui/Octave.cpp
  A	src/gui/Python.cpp
  A	src/gui/Python.h
  A	src/gui/R.cpp
  A	src/gui/TextGUI.cpp
  A	src/gui/TextGUI.h
  A	src/guilib/GUIClassifier.cpp
  A	src/guilib/GUIClassifier.h
  A	src/guilib/GUIFeatures.cpp
  A	src/guilib/GUIFeatures.h
  A	src/guilib/GUIHMM.cpp
  A	src/guilib/GUIHMM.h
  A	src/guilib/GUIKNN.cpp
  A	src/guilib/GUIKNN.h
  A	src/guilib/GUIKernel.cpp
  A	src/guilib/GUIKernel.h
  A	src/guilib/GUILabels.cpp
  A	src/guilib/GUILabels.h
  A	src/guilib/GUIMath.cpp
  A	src/guilib/GUIMath.h
  A	src/guilib/GUIMatlab.cpp
  A	src/guilib/GUIMatlab.h
  A	src/guilib/GUIOctave.cpp
  A	src/guilib/GUIOctave.h
  A	src/guilib/GUIPluginEstimate.cpp
  A	src/guilib/GUIPluginEstimate.h
  A	src/guilib/GUIPreProc.cpp
  A	src/guilib/GUIPreProc.h
  A	src/guilib/GUIPython.cpp
  A	src/guilib/GUIPython.h
  A	src/guilib/GUIR.cpp
  A	src/guilib/GUIR.h
  A	src/guilib/GUISVM.cpp
  A	src/guilib/GUISVM.h
  A	src/guilib/GUITime.cpp
  A	src/guilib/GUITime.h
  A	src/kernel/AUCKernel.cpp
  A	src/kernel/AUCKernel.h
  A	src/kernel/AUCKernel.i
  A	src/kernel/ByteKernel.h
  A	src/kernel/ByteKernel.i
  A	src/kernel/CanberraWordKernel.cpp
  A	src/kernel/CanberraWordKernel.h
  A	src/kernel/CharKernel.h
  A	src/kernel/CharKernel.i
  A	src/kernel/CharPolyKernel.cpp
  A	src/kernel/CharPolyKernel.h
  A	src/kernel/CharPolyKernel.i
  A	src/kernel/Chi2Kernel.cpp
  A	src/kernel/Chi2Kernel.h
  A	src/kernel/Chi2Kernel.i
  A	src/kernel/CombinedKernel.cpp
  A	src/kernel/CombinedKernel.h
  A	src/kernel/CombinedKernel.i
  A	src/kernel/CommUlongStringKernel.cpp
  A	src/kernel/CommUlongStringKernel.h
  A	src/kernel/CommUlongStringKernel.i
  A	src/kernel/CommWordKernel.cpp
  A	src/kernel/CommWordKernel.h
  A	src/kernel/CommWordKernel.i
  A	src/kernel/CommWordStringKernel.cpp
  A	src/kernel/CommWordStringKernel.h
  A	src/kernel/CommWordStringKernel.i
  A	src/kernel/ConstKernel.cpp
  A	src/kernel/ConstKernel.h
  A	src/kernel/CustomKernel.cpp
  A	src/kernel/CustomKernel.h
  A	src/kernel/CustomKernel.i
  A	src/kernel/DiagKernel.cpp
  A	src/kernel/DiagKernel.h
  A	src/kernel/DiagKernel.i
  A	src/kernel/FixedDegreeCharKernel.cpp
  A	src/kernel/FixedDegreeCharKernel.h
  A	src/kernel/FixedDegreeCharKernel.i
  A	src/kernel/GaussianKernel.cpp
  A	src/kernel/GaussianKernel.h
  A	src/kernel/GaussianKernel.i
  A	src/kernel/HammingWordKernel.cpp
  A	src/kernel/HammingWordKernel.h
  A	src/kernel/HistogramWordKernel.cpp
  A	src/kernel/HistogramWordKernel.h
  A	src/kernel/HistogramWordKernel.i
  A	src/kernel/Kernel.cpp
  A	src/kernel/Kernel.h
  A	src/kernel/Kernel.i
  A	src/kernel/KernelMachine.cpp
  A	src/kernel/KernelMachine.h
  A	src/kernel/KernelMachine.i
  A	src/kernel/LinearByteKernel.cpp
  A	src/kernel/LinearByteKernel.h
  A	src/kernel/LinearByteKernel.i
  A	src/kernel/LinearCharKernel.cpp
  A	src/kernel/LinearCharKernel.h
  A	src/kernel/LinearCharKernel.i
  A	src/kernel/LinearKernel.cpp
  A	src/kernel/LinearKernel.h
  A	src/kernel/LinearKernel.i
  A	src/kernel/LinearWordKernel.cpp
  A	src/kernel/LinearWordKernel.h
  A	src/kernel/LinearWordKernel.i
  A	src/kernel/LocalityImprovedCharKernel.cpp
  A	src/kernel/LocalityImprovedCharKernel.h
  A	src/kernel/LocalityImprovedCharKernel.i
  A	src/kernel/ManhattenWordKernel.cpp
  A	src/kernel/ManhattenWordKernel.h
  A	src/kernel/PolyKernel.cpp
  A	src/kernel/PolyKernel.h
  A	src/kernel/PolyKernel.i
  A	src/kernel/PolyMatchCharKernel.cpp
  A	src/kernel/PolyMatchCharKernel.h
  A	src/kernel/PolyMatchCharKernel.i
  A	src/kernel/PolyMatchWordKernel.cpp
  A	src/kernel/PolyMatchWordKernel.h
  A	src/kernel/PolyMatchWordKernel.i
  A	src/kernel/RealKernel.h
  A	src/kernel/RealKernel.i
  A	src/kernel/SalzbergWordKernel.cpp
  A	src/kernel/SalzbergWordKernel.h
  A	src/kernel/SalzbergWordKernel.i
  A	src/kernel/ShortKernel.h
  A	src/kernel/ShortKernel.i
  A	src/kernel/SigmoidKernel.cpp
  A	src/kernel/SigmoidKernel.h
  A	src/kernel/SigmoidKernel.i
  A	src/kernel/SimpleKernel.h
  A	src/kernel/SimpleKernel.i
  A	src/kernel/SimpleLocalityImprovedCharKernel.cpp
  A	src/kernel/SimpleLocalityImprovedCharKernel.h
  A	src/kernel/SimpleLocalityImprovedCharKernel.i
  A	src/kernel/SparseGaussianKernel.cpp
  A	src/kernel/SparseGaussianKernel.h
  A	src/kernel/SparseGaussianKernel.i
  A	src/kernel/SparseKernel.h
  A	src/kernel/SparseKernel.i
  A	src/kernel/SparseLinearKernel.cpp
  A	src/kernel/SparseLinearKernel.h
  A	src/kernel/SparseLinearKernel.i
  A	src/kernel/SparseNormSquaredKernel.cpp
  A	src/kernel/SparseNormSquaredKernel.h
  A	src/kernel/SparseNormSquaredKernel.i
  A	src/kernel/SparsePolyKernel.cpp
  A	src/kernel/SparsePolyKernel.h
  A	src/kernel/SparsePolyKernel.i
  A	src/kernel/SparseRealKernel.h
  A	src/kernel/SparseRealKernel.i
  A	src/kernel/StringKernel.h
  A	src/kernel/StringKernel.i
  A	src/kernel/WDCharKernel.cpp
  A	src/kernel/WDCharKernel.h
  A	src/kernel/WDCharKernel.i
  A	src/kernel/WeightedDegreeCharKernel.cpp
  A	src/kernel/WeightedDegreeCharKernel.h
  A	src/kernel/WeightedDegreeCharKernel.i
  A	src/kernel/WeightedDegreeCharKernelPolyA.cpp
  A	src/kernel/WeightedDegreeCharKernelPolyA.h
  A	src/kernel/WeightedDegreeCharKernelPolyA.i
  A	src/kernel/WeightedDegreePositionCharKernel.cpp
  A	src/kernel/WeightedDegreePositionCharKernel.h
  A	src/kernel/WeightedDegreePositionCharKernel.i
  A	src/kernel/WordKernel.h
  A	src/kernel/WordKernel.i
  A	src/kernel/WordMatchKernel.cpp
  A	src/kernel/WordMatchKernel.h
  A	src/kernel/WordMatchKernel.i
  A	src/kernel/__init__.py
  A	src/lib/Cache.h
  A	src/lib/Cache.i
  A	src/lib/Cplex.cpp
  A	src/lib/Cplex.h
  A	src/lib/DynArray.h
  A	src/lib/DynArray.i
  A	src/lib/File.cpp
  A	src/lib/File.h
  A	src/lib/File.i
  A	src/lib/List.h
  A	src/lib/List.i
  A	src/lib/Mathmatics.cpp
  A	src/lib/Mathmatics.h
  A	src/lib/Mathmatics.i
  A	src/lib/Parallel.cpp
  A	src/lib/Parallel.h
  A	src/lib/Parallel.i
  A	src/lib/Signal.cpp
  A	src/lib/Signal.h
  A	src/lib/Signal.i
  A	src/lib/SimpleFile.h
  A	src/lib/SimpleFile.i
  A	src/lib/Time.cpp
  A	src/lib/Time.h
  A	src/lib/Time.i
  A	src/lib/Version.cpp
  A	src/lib/Version.h
  A	src/lib/Version.i
  A	src/lib/common.h
  A	src/lib/common.i
  A	src/lib/config.i
  A	src/lib/io.cpp
  A	src/lib/io.h
  A	src/lib/io.i
  A	src/lib/lapack.c
  A	src/lib/lapack.h
  A	src/lib/lapack.i
  A	src/lib/versionstring.i
  A	src/preproc/LogPlusOne.cpp
  A	src/preproc/LogPlusOne.h
  A	src/preproc/NormDerivativeLem3.cpp
  A	src/preproc/NormDerivativeLem3.h
  A	src/preproc/NormOne.cpp
  A	src/preproc/NormOne.h
  A	src/preproc/PCACut.cpp
  A	src/preproc/PCACut.h
  A	src/preproc/PreProc.cpp
  A	src/preproc/PreProc.h
  A	src/preproc/PruneVarSubMean.cpp
  A	src/preproc/PruneVarSubMean.h
  A	src/preproc/RealPreProc.h
  A	src/preproc/ShortPreProc.cpp
  A	src/preproc/ShortPreProc.h
  A	src/preproc/SimplePreProc.h
  A	src/preproc/SortUlongString.cpp
  A	src/preproc/SortUlongString.h
  A	src/preproc/SortWord.cpp
  A	src/preproc/SortWord.h
  A	src/preproc/SortWordString.cpp
  A	src/preproc/SortWordString.h
  A	src/preproc/SparsePreProc.h
  A	src/preproc/StringPreProc.h
  A	src/preproc/WordPreProc.cpp
  A	src/preproc/WordPreProc.h
  A	src/regression/svr/LibSVR.cpp
  A	src/regression/svr/LibSVR.h
  A	src/regression/svr/SVR_light.cpp
  A	src/regression/svr/SVR_light.h
  A	src/sg.m
  A	src/svm/svm_learn.h
  A	src/swigfiles/common.i
  A	src/tests/script2
  A	src/tests/test_it.scr
  A	src/tests/test_it2.scr
  A	tests/gen_int.cpp
  A	tests/gen_sparse.cpp
  A	tests/runtime_type_detection.cpp
  A	tests/type_comparison.cpp
