BALL::VIEW::AddCartoonModel Class Reference

#include <BALL/VIEW/MODELS/cartoonModel.h>

Inheritance diagram for BALL::VIEW::AddCartoonModel:

List of all members.

Public Types
enum	Types { STRAND = NUCLEIC_ACID + 1, HELIX }
Public Member Functions
	AddCartoonModel ()
	Default Constructor.
	AddCartoonModel (const AddCartoonModel &cartoon_model)
	Copy constructor.
virtual	~AddCartoonModel ()
	Destructor.
void	setHelixRadius (float radius)
float	getHelixRadius () const
void	setArrowWidth (float width)
float	getArrowWidth () const
void	setStrandHeight (float heigth)
float	getStrandHeight () const
void	setStrandWidth (float w)
float	getStrandWidth () const
void	setDNABaseRadius (float r)
float	getDNABaseRadius () const
void	setDNAHelixRadius (float r)
float	getDNAHelixRadius () const
void	setDNALadderRadius (float r)
float	getDNALadderRadius () const
void	setDrawDNAAsLadderModel (bool state)
bool	drawDNAAsLadderModel ()
void	enableRibbons (bool state)
bool	ribbonsEnabled () const
Protected Member Functions
void	insertTriangle_ (Position v1, Position v2, Position v3, Mesh &mesh)
void	drawStrand_ (const Vector3 &start, Vector3 &right, Vector3 &hn, float arrow_width, Position &last_vertices, Mesh &mesh)
void	calculateComplementaryBases_ (const Composite &composite)
bool	assignNucleotideAtoms_ (Residue &r, Size nr_atoms, String atom_names[10], Atom *atoms[10])
void	drawRiboseAtoms_ (const Atom *atom1, const Atom *atom2, const Vector3 &v1, const Vector3 &v2)
void	calculateModelParts (Protein &protein)
void	assignModelType (ModelPart &part)
void	createModel_ (Position set_pos, Position part_pos)
void	createStrand_ (Position set_pos, Position part_pos)
void	createHelix_ (Position set_first, Position part_pos)
void	createTubeHelix_ (Position set_first, Position part_pos)
void	createWatsonCrickModel_ (Position set_pos, Position part_pos)
void	createSimpleNucleicAcid_ (Position set_pos, Position part_pos)
void	renderNucleotideOutline_ (const vector< Vector3 > &positions, Vector3 uv, Mesh &mesh)
Mesh *	createDoubleRing_ (const vector< Vector3 > &positions)
Mesh *	create6Ring_ (vector< Vector3 > positions)
virtual void	refineGuidePoints_ ()
Protected Attributes
float	helix_radius_
float	helix_height_
float	helix_width_
float	arrow_width_
float	strand_width_
float	strand_height_
float	DNA_helix_radius_
float	DNA_ladder_radius_
float	DNA_base_radius_
float	ribbon_width_
float	ribbon_radius_
bool	draw_DNA_as_ladder_
bool	draw_ribbon_
HashMap< const Residue *, const Residue * >	complementary_bases_

---

Detailed Description

AddCartoonModel class. The class AddCartoonModel is a model processor that creates a Cartoon model through the CA-atoms of the processed Composite object. For information about the processor concept see Processor in the BALL documentation.

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Member Enumeration Documentation

enum BALL::VIEW::AddCartoonModel::Types

Enumerator:

STRAND
HELIX

---

Constructor & Destructor Documentation

BALL::VIEW::AddCartoonModel::AddCartoonModel

(

)

Default Constructor.

BALL::VIEW::AddCartoonModel::AddCartoonModel

(

const AddCartoonModel &

cartoon_model

)

Copy constructor.

virtual BALL::VIEW::AddCartoonModel::~AddCartoonModel

(

)

[virtual]

Destructor.

---

Member Function Documentation

void BALL::VIEW::AddCartoonModel::assignModelType

(

ModelPart &

part

)

[protected, virtual]

Reimplemented from BALL::VIEW::AddBackboneModel.

bool BALL::VIEW::AddCartoonModel::assignNucleotideAtoms_	(	Residue &	r,
		Size	nr_atoms,
		String	atom_names[10],
		Atom *	atoms[10]
	)		[protected]

void BALL::VIEW::AddCartoonModel::calculateComplementaryBases_

(

const Composite &

composite

)

[protected]

void BALL::VIEW::AddCartoonModel::calculateModelParts

(

Protein &

protein

)

[protected, virtual]

Reimplemented from BALL::VIEW::AddBackboneModel.

Mesh* BALL::VIEW::AddCartoonModel::create6Ring_

(

vector< Vector3 >

positions

)

[protected]

Mesh* BALL::VIEW::AddCartoonModel::createDoubleRing_

(

const vector< Vector3 > &

positions

)

[protected]

void BALL::VIEW::AddCartoonModel::createHelix_	(	Position	set_first,
		Position	part_pos
	)		[protected]

void BALL::VIEW::AddCartoonModel::createModel_	(	Position	set_pos,
		Position	part_pos
	)		[protected, virtual]

Reimplemented from BALL::VIEW::AddBackboneModel.

void BALL::VIEW::AddCartoonModel::createSimpleNucleicAcid_	(	Position	set_pos,
		Position	part_pos
	)		[protected]

void BALL::VIEW::AddCartoonModel::createStrand_	(	Position	set_pos,
		Position	part_pos
	)		[protected]

void BALL::VIEW::AddCartoonModel::createTubeHelix_	(	Position	set_first,
		Position	part_pos
	)		[protected]

void BALL::VIEW::AddCartoonModel::createWatsonCrickModel_	(	Position	set_pos,
		Position	part_pos
	)		[protected]

bool BALL::VIEW::AddCartoonModel::drawDNAAsLadderModel

(

)

[inline]

void BALL::VIEW::AddCartoonModel::drawRiboseAtoms_	(	const Atom *	atom1,
		const Atom *	atom2,
		const Vector3 &	v1,
		const Vector3 &	v2
	)		[protected]

void BALL::VIEW::AddCartoonModel::drawStrand_	(	const Vector3 &	start,
		Vector3 &	right,
		Vector3 &	hn,
		float	arrow_width,
		Position &	last_vertices,
		Mesh &	mesh
	)		[inline, protected]

void BALL::VIEW::AddCartoonModel::enableRibbons

(

bool

state

)

[inline]

float BALL::VIEW::AddCartoonModel::getArrowWidth

(

)

const [inline]

float BALL::VIEW::AddCartoonModel::getDNABaseRadius

(

)

const [inline]

float BALL::VIEW::AddCartoonModel::getDNAHelixRadius

(

)

const [inline]

float BALL::VIEW::AddCartoonModel::getDNALadderRadius

(

)

const [inline]

float BALL::VIEW::AddCartoonModel::getHelixRadius

(

)

const [inline]

float BALL::VIEW::AddCartoonModel::getStrandHeight

(

)

const [inline]

float BALL::VIEW::AddCartoonModel::getStrandWidth

(

)

const [inline]

void BALL::VIEW::AddCartoonModel::insertTriangle_	(	Position	v1,
		Position	v2,
		Position	v3,
		Mesh &	mesh
	)		[protected]

virtual void BALL::VIEW::AddCartoonModel::refineGuidePoints_

(

)

[protected, virtual]

Reimplemented from BALL::VIEW::AddBackboneModel.

void BALL::VIEW::AddCartoonModel::renderNucleotideOutline_	(	const vector< Vector3 > &	positions,
		Vector3	uv,
		Mesh &	mesh
	)		[protected]

bool BALL::VIEW::AddCartoonModel::ribbonsEnabled

(

)

const [inline]

void BALL::VIEW::AddCartoonModel::setArrowWidth

(

float

width

)

[inline]

void BALL::VIEW::AddCartoonModel::setDNABaseRadius

(

float

r

)

[inline]

void BALL::VIEW::AddCartoonModel::setDNAHelixRadius

(

float

r

)

[inline]

void BALL::VIEW::AddCartoonModel::setDNALadderRadius

(

float

r

)

[inline]

void BALL::VIEW::AddCartoonModel::setDrawDNAAsLadderModel

(

bool

state

)

[inline]

void BALL::VIEW::AddCartoonModel::setHelixRadius

(

float

radius

)

[inline]

void BALL::VIEW::AddCartoonModel::setStrandHeight

(

float

heigth

)

[inline]

void BALL::VIEW::AddCartoonModel::setStrandWidth

(

float

w

)

[inline]

---

Member Data Documentation

float BALL::VIEW::AddCartoonModel::arrow_width_ [protected]

HashMap<const Residue*, const Residue*> BALL::VIEW::AddCartoonModel::complementary_bases_ [protected]

float BALL::VIEW::AddCartoonModel::DNA_base_radius_ [protected]

float BALL::VIEW::AddCartoonModel::DNA_helix_radius_ [protected]

float BALL::VIEW::AddCartoonModel::DNA_ladder_radius_ [protected]

bool BALL::VIEW::AddCartoonModel::draw_DNA_as_ladder_ [protected]

bool BALL::VIEW::AddCartoonModel::draw_ribbon_ [protected]

float BALL::VIEW::AddCartoonModel::helix_height_ [protected]

float BALL::VIEW::AddCartoonModel::helix_radius_ [protected]

float BALL::VIEW::AddCartoonModel::helix_width_ [protected]

float BALL::VIEW::AddCartoonModel::ribbon_radius_ [protected]

float BALL::VIEW::AddCartoonModel::ribbon_width_ [protected]

Reimplemented from BALL::VIEW::AddBackboneModel.

float BALL::VIEW::AddCartoonModel::strand_height_ [protected]

float BALL::VIEW::AddCartoonModel::strand_width_ [protected]